lowQualScore : 1111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 1111 11 222222 11 222 333333 1 22 11111111 55555555555555 111 11 111 1111111111111111111111111111111111111111111111 1 99999999999999999999999999999999999999999 1 11111 3333333333333333 11111 11111 33333333333333333333333333333 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 111 2222 11 55555555555555555555555555555 1111 11 1111 1111111111111111 11111 222222222 222 2222
lowQualScore : 5 888 5 66 5 888 5 1 0000 5 5 5 5 5 5 5 000 888 5 88 5 2 4 55 888 66 66 4 4 4 8 66 4 4 555 4 66 2 66 0000 4 8 8 11 999999 11 2 666 000000 3 00 88888888 0 22222222222222 555 1 8 6 3 8 6 6 6 00 2 8 444 9999999999999999999999999999999999999999999999 9 7 3 00000000000000000000000000000000000000000 5 3 8888 3 5 5 5 88888 8888888888888888 44444 4 4 4 4 4 77777 4 5 88888888888888888888888888888 22 0 00 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444444 66 333 3 7 7777 77 0 66 5 5 5 99999999999999999999999999999 4 0000 5 5 2 44 4 7777 4 55 3 2222222222222222 44444 44 666 3 999999999 6 111 0 5555 8888 55 3 55 4 8 3 44 6 88 777 777
lowQualScore : . ... . .. . ... . . .... . . . . . . . ... ... . .. . . . .. ... .. .. . . . . .. . . ... . .. . .. .... . . . .. ...... .. . ... ...... . .. ........ . .............. ... . . . . . . . . .. . . ... .............................................. . . . ......................................... . . .... . . . . ..... ................ ..... . . . . . ..... . . ............................. .. . .. .................................................................................... ...... .. ... . . .... .. . .. . . . ............................. . .... . . . .. . .... . .. . ................ ..... .. ... . ......... . ... . .... .... .. . .. . . . .. . .. ... ...
lowQualScore : 0 888 0 99 0 888 0 8 6666 0 0 0 0 0 0 0 222 888 0 77 7 2 4 44 888 33 11 4 4 4 9 11 4 4 777 4 11 7 11 2222 4 9 9 88 444444 99 2 999 999999 3 00 88888888 9 88888888888888 777 4 4 7 3 0 7 7 7 00 8 0 000 4444444444444444444444444444444444444444444444 8 3 3 00000000000000000000000000000000000000000 0 2 8888 2 7 7 7 77777 3333333333333333 33333 3 4 4 4 4 22222 4 2 88888888888888888888888888888 11 1 66 666666666666666666666666666666666666666666666666666666666666666666666666666666666666 444444 99 888 2 1 0000 99 9 44 7 7 0 77777777777777777777777777777 4 6666 0 0 0 55 0 0000 0 55 0 6666666666666666 77777 66 999 3 777777777 7 111 4 4444 8888 00 6 00 0 0 8 88 7 33 888 888
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACAAAA-TAT-G-C-AATG--CTA---ATAT-AAG-AAT-ATACCTTTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGG-TTA-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA-T--G-CAGTA-TA-AT-AAAA-T----AAAATGCA--TTCTGT-N-ATAGAGNATAN-ATG-TTGTCAAC-AATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGA-ACA---TTA-AA---------TAAA----------------TT---TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGA-TGTA-TACTACACGTAGCAATA-----ACACACAC--TATNTTTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGGGGGGGGG-G-G------------TG-----ACAA-AA-TG-TT-ACA-----G-CGCC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-TGAA---A-TAT----A-CATAT------AAT-TGC-AATTCAGATT----GCTTT-CTCT-GAATTACAATCA-T----CATA-C--GAAACTATGGTTG---TACATAT--ATATGT-AT--TT--GCAAT-AA-TGTC-NA--A-ATAT-TCTGTT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-C-ATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( gi|3 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACAAAA-TAT-G-C-AATG--TTA---ATAT-AAG-AAT-ATACCTTTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGG-TTA-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA-T--G-CAGTA-TA-AT-AAAA-TA---AAAATGCA--TTTTGT-A-ATAGAGC-TAT-ATG-TTGTCAAC-GATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGA-ACA---TT-------------TGAA----------------TT---TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAA-TGTA-TA--ACATATAGCAATAGTG-AATACACACCTTATGTTTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGGAGGGGGG-G-G------------TG-----ACAA-AA-TG-TT-ACA-----G-CACC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGAA---A-TAT----A-CATAT------AATATGC-AATTCAGATT----GCTTT-CTCT-GAATTACAATCA-T----CATA-T--GAAATTATGGTTG---TACATAT--ATATGT-AT--TT--GCAAT-AA-TGT--AA--A-ATAT-TCTGTTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-C-ATAAT-TGCTGTT---TCAT---GAAATTCCTTATCAN
gi|18 : CTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACAAAA-TAT-G-C-AATG--CTA---TTAT-AAG-AAT-ATACCTTTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGG-TTA-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA-T--G-CAGTA-TA-AT-AAAA-T----AAAATGCA--TTCTGT-T-ATAGAGCATA--ATG-TTGTCAAC-AATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-NNN-NNNNNNNN-NNNNNNNN-NNN---NN-------------NAAG----------------TT---TC
gi|2 : CTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-AAA-TAT-G-CAAATG--CTA---ATAT-AA
gi|20 : CTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACAAAAATAT-GGC-AATG--CTA---ATATTAAA-AAT-ATGTCTTTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-T-T-T--------AT--GAATGAGTTGG-CAGTATTA-AT--AAA-T----AAAATGCA--TTCTGT-A-TTAGAGCATAA-ATGTTTGTC-AC-AATACATA----TTTAATACTACAT------acaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|19 : tCTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACAAAA-TAT-G-C-CATGCCTTA---AAGT-AAGAAATAATAA--TTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGG-TTA-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA-T--G--AGCA-TACAT------------AAATGCA--TACTGT-ACATAGAAA--AT-AT--TTGTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAatat
gi|34 : tCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACAAAA-TAT-G-C-CATG--CTA---ATGT-AAG-AAT-ACACCTTTT-A
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACAAAA-TAT-G-C-AATG--CTATGTAGAT-AAT-AAT-GTACTTTTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGA-TTA-A----------------T-TTTG--CTTAT--GAATGA-A--G-CAGTG-CA-AT-AAAA-T----AATATGCA--TTCCGTCATATAGAGCATA--ATG-TTGTCAA--AATACAT-----C---ATGCAACAT------ctga
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACAAAA-TATTG-C-AATG--TTA---ATAT-AAG-AAT-ATACCTTTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGG-TTATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA-T--G-CAGTA-TA-AT--AAA-T----AAAATGCAT-TTTTGT---ATAAAGG-CATAATGTTTGTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGA-ACA---TTATAAACAAATCAGTGAA----------------TT---TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GA-T-TACTA--CTAT-TAGC-ATAGTGAAATACACAC---AT------ATA--------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA-G------------TG-----A-AA-AA-TG-TA-ACA-----G-C-CC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--AT-G-A-----------A----T-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG-A---A-TAT----A-TAT------------TGC-AATTCAGATT----GCTTT-CTCT-GAATTAC-ATCA-T----CATA-C--GAAACTATGGTTG---TACATAT--AT-TGCAATTATT--GCAAT-AA-TGTC-AA--A-ATAT-TCTGTT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA--TGCT-TT---TCAT---GAAATATCTTATCAgctacaacagtagg
gi|11 : TAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAAAAA--AT-G-C-AATG--GTA---ATGT-AA--AAT-ATTATTTTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGG-TTA-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA-A--G-CAGTA-TA-AT-AAAATTAGATAAAATGCA--TGCTGT-T-ATAAAGC-ACG-ATG-TTGTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGACAA-ACAAACTT-------------TTAA-----------------------AA----ACAAAATaatattttaaaa
gi|23 : tttcttcatctatACTTTTTGAC-AGA-TTTT---AGTGCGAACT-AT----AAAAT-AG-AGCTGAG-ATGTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA-T--GTCAGTAGTAGATAAAAA-TA---AAAATAAAGGGTTGAT-T-ATAGAGA-TAT-ATGTTTGTCAAC-AATACATAT---T---ATGTACCATGTTACAT-----CGGTA--GGAT-AATAAA-TTTAAAAGAATCTGctgtgaatca
gi|35 : tgaagaagacataaaaaacaatgaaatgcca-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATA-TTA-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA-A--G-CAGTA-TA-AC-AAAG-TA---
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGG-TTA-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA-T--G-CAGTA-T---T-AAGA--------AATGCA--TTCTGTTA-ATAACAA-TAA-ATT-TGGTCAACAGATACATA----T----CGCAACAT------------CAGTA---GATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC-CGACAGA---TT-------------TAAAAAAAAAATCAGTAAGTTT---TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-----TA-CT--ATATATAGCA-----------TACACCATATGTT-AGATAAA-T-AATTTG-TTACA-TTTGGC-AAG---GGGG-G-G------------TG-----ACAATAA-TG-TTCACGAT---G-CACC-------------T-----AAT-TAATTAGTGACCTTCAAGA--TATTTTAAA--ATAG-AA-------T--AAATAT-ACG--TGTA---T---------AGAA--------------------------GTACC------ATTT--AT---TTTACATGCAATG---TAA--AAACTT--TG-CA-TGAATATG-TAT----G-CTTGC------AAAATGC-
gi|29 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttctt-ATG-TTGTCAAC-AATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAtctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|36 : cata-AAA-TCA-TATGCATG--AACACGA-ACA---TTAAAA---------CAAA----------------ATCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTA-TGTA-aatggcgaagtaaacaa
gi|22 : CAACTGTA-TACTGCACGTAGCAAT------ACACATA---TATTCTTAGATTTA-TTAACTTG-C-ACA-ATT-GT-AT--GGTGAT-T-A------------TG-----ACAA-AAGTT-TT-ACA-----G-CGCC-------------T-------T-CAA---GT--------AGT--TAGT----AGGATA--AA-------T--A----T-ACT--TGCA---T---------c
gi|10 : a-TGTA-TACTACACAAAGCAATA------CACACA---TATCTTTAGATTAA-TTAACTTG-T-ACACTTTGAT-----GGTGAT-T-C------------TG-----ACAA-AC-TC-TT-ACA-----G-CG--------------------------------------TCAAGT--TATT----A--ATAG-GA-------T--A-------------------------------------------A-A-----T-----AATACC------ATTC--AT---TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGAAC--A-TAT----ttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|1 : actacTTTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGTGGGGGGG-G-G------------TT-----ACAA-AA-CT-TA-ACATCTAAGTCACC-------------TTCAAGAATATAAT--GAGAAAGTTAAAA--TATT----A--GAAG-TAGTCATTCT--A----TTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACAA---C-TGC----A-C-TATCCTGCTAAT-TTC-AATTCAGATT----GCTTT-CTCT-GAATTACA-TCA-T----CAAA-T--GAAACTATGGTTG---TACATAT------GT-AT--TT--GCAAA-AA-TGTC-AA--A-ATAT-TCTGTTAA-CCCGC--T-ATTCAA--C-T--GCAG-ACTGC--AT-C-ATAAT-TGCTGTT---TCAT---GAAATTCCTTATCActaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|9 : cacatatcaTTTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGGGGGGGGG-G-GGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCTATATAACAAGTAT-----AAG-TAA---ATAATCTATACCACTTATT----T--TCAGCAA-------T--A------ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGAC---A-GACTTGGA-C-TAT------ATTCTGCTAATTTAAATTCATTGCTTTTCTCT-GAACCTTAA-CA-T-----GTA-T--AAAATTATGGTTG---TAGCTA-----ATGT-AT--TT--GCATA-AA-TGTTCAA--C-ATATATTTAT-----------C-ATTCAAATCCT--AGAGAAATGCATAT-C-ATAATCTGATGTTTTATCAT---G-AATTCCTTATCAaaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|5 : -T-ACA-TTTGGC-AGGAGGGGGG-AAG------------TG-----A-AA-AA-TG-TA-ACA-----G-C-CC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--AT-G-AA-------T--A-------CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG-A---A-TAT----A-TAT------------TGC-AATTCAGATT----GCTTT-CTCT-GAATTAC-ATCA-T----CATA-C--GAAACTATGGTTG---TACATAT--AT-TGCAATTATT--GCAAT-AA-TGTC-AA--A-ATAT-TCTGTT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA--TGCT-TT---TCAT---GAAATATCTTATCAaat
gi|8 : A-AA-TGGTT-ACA-----G-CACC-------------T-----AGT-------G-GACCTTCAAGT--TATTTTT-A--ACTG-AA----------A----T-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTACATGCAATG---TAA--AAACGTA-TG-CATTGAA---ATTAT----ATCATAT------CTCTTGC-AA---AGAT----------------------CAGCCA-T----CATA-CTGGAGATTATTGAAA---TAGATTT--ACAAAT-CT--TTAGACAAC-AACTG-------A-CTAT-TCTGCTGAA-------T-TTTCAA----T--TCAG-ATTGC--aatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|17 : -AA-TG-TT-ACA-----G-CACC-------------T-----ACC-TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------TAAA----T-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTACATtttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|2 : T------AAT-TTC-AATTCAGATT----GTTTT-CTCT-GAATTACA-TCA-A----CATACT--GGAAC-ATGGTTG---TACA-----A-ATGT-AT--TT--GCAAT-AA-TGT--CA--A-CTAT-TCTGTTAnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|8 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgc------AATTTTC-AATTCAGATT----GCTTT-CTCTGGAATT--AATCATT----CATA-T--GAAACTATGGTTG---TA-ACAT---TAT-T-AT--TT--GCAATCAA-TGTC-AA--C-ATATCTCTGCTCTAACCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCC-ATAAT-TGATGTT---TCATTTCGAAATCCCTTtcgcgc
gi|10 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctg-AATACAGAGT----AATTT-CTCT-GAATTAC-ATCA-T----TTTA-T--GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TC--GTGCT-AA-TGT--AAGCA-A-AT-TATGTT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-C-ATTAT-Tgcatctcacaatattcattaagattaggcgttct
gi|6 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttTTACA-TCA-TTTGACATA-T--GAAACTAAGGTT---------AC--ATATGT-------------C-AA-TGT--TC--A--TAT-TCTGTTAA-CCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-C-ATTAT-TGATA-T---TCAT---GAAATTCATTATCAca
gi|30 : ATCA-TTTGACATA-T--GAAACTAAGGTT---------AC--ATATGT-------------C-AA-TGT--TC--A--TAT-TCTGTTAA-CCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-C-ATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|31 : acCATATGCATATGT-AT--TT--GCAGT-AA-TGT--CA--ACATAT-TCTGTT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-C-ATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|17 : acatcatT--GCA-T-AA-TGT--CA--CCATAT-TCTGTT-AACCCGC--T-ATTCAA--Ca
gi|7 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-ATTTAA--C-T--GCAG-ACTAC--AT-C-ATCAT-TGATGTT---TTAT---GAAATTCATTATt
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 111 1 11 11111111 44444444444444 1 999999999999999999999999999999999999 11 1111 1 22 11 333333333 333 1111 111111 33333333333333 11111 2222222222222222 11 1111 4444444444444444444444444444444444444444444444444444 2222 11 55555555555555555555 11 1111 11111111111 11111 222
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 111 4 4 5 6 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 0 0 777777777777777777777777777777777777 11 1 7777 3 3 0 55 2 6 11 2 666666666 000 2222 3 5 1 5 5 5 000000 88888888888888 22222 2 4 4 4 4 55 3333333333333333 33 666 0 55 4444 55 55 3 9999999999999999999999999999999999999999999999999999 4 66 4 0 3 0000 55 0 33 4 4 7777 4 55555555555555555555 4 2 4 4 0 11 3 5555 888 0 11111111111 1 22222 44 555 4 99 3 44 3 0 4444 111 44 3 44 3 88888 3 88 666 55 666
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... ... . . . . . . .. ........ .............. . .. . . . . . . .. . . .................................... .. . .... . . . .. . . .. . ......... ... .... . . . . . . ...... .............. ..... . . . . . .. ................ .. ... . .. .... .. .. . .................................................... . .. . . . .... .. . .. . . .... . .................... . . . . . .. . .... ... . ........... . ..... .. ... . .. . .. . . .... ... .. . .. . ..... . .. ... .. ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 666 4 4 3 6 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 8 8 444444444444444444444444444444444444 00 0 0000 2 2 0 55 5 7 00 8 000000000 888 6666 0 7 4 0 0 0 000000 55555555555555 55555 5 0 0 0 0 55 7777777777777777 55 444 5 99 1111 00 99 6 0000000000000000000000000000000000000000000000000000 4 11 0 8 6 8888 55 5 77 0 0 1111 0 99999999999999999999 0 5 4 4 9 44 6 5555 888 5 77777777777 2 00000 22 000 0 00 1 22 1 7 6666 222 66 3 66 3 11111 3 00 444 00 444
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TA-TAGA-GCATA-ATG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGAACA---TTA----------AAN--AAA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA--GCACC-------------TAATTAA---GTGACCTTCAAGA--TATT----A--AT-AG-AAT--A----TACG--TGTAT---------AAAATA---GA-AGTA-CT-----AGTACCATT-T--AT-TTTACATGCAATG--TTAA--AAACCTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------A-AT-TNCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC--GAAACTATGGTTGTA---CATAT--ATATGT-AT--TT--GCAAT-AATGTCAAA-ATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CAT----NAT-TGATGTT---TC--AT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--NA-TAGA-GNATANATG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGAACA---TTA----------AAT--AAA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACGTAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA--GCGCC-------------TAATTAA---GTGACCTTCAAGA--TATT----A--AT-AG-AAT--A----TACG--TGTAT---------AAAATA---GA-AGTA-CT-----AGTACCATT-T--AT-TTTACATGCAATG--TTAA--AAACCTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------A-AT-TGCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC--GAAACTATGGTTGTA---CATAT--ATATGT-AT--TT--GCAAT-AATGTCNAA-ATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CAT----NAT-TGATGTT---TC--AT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACA--TC--------------------TAA---GTCACCTTCAAGAA-TAT-----A--ATGAG-AA---------A-----GT-T---------AAAATATTAGA-AGTA---------GT--CATTCT--AT-T--ACATGCAATG--T-AA--AAACTTA-TG-CA-TGA-A-A-T
gi|1 : -TTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACA-A-C-TGC----A-C--TATCCTGCTA-AT-TTCAATTCAGATTGCTTT-CTCT-GAATTACA-TCA-T----CAAAT--GAAACTATGGTTGTA---CATAT------GT-AT--TT--GCAAA-AATGTCAAA-ATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CAT----AAT-TGCTGTT---TC--AT---GAAATTCCTTATCAtatgccttgcaaatttgcctgtttattgcaataacttaaaaatcttgacaacaactgcactatcctgctaatttcaattcagattgctttctctgaattacatcatcaaatgaaactatggttgtacatatgtatttgcaaaaatgtcaaaatattctgttaacccgctattcaactgcagactgcatcataattgctgtttcatgaaattccttatcaaaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : cacatatcatttagaacaattaatttggtacagttggcgagtgggggggggttacaaaacttaacatctaagtcaccttcaagaatataatgagaaagttaaaatattagaagtagtcattctattacatgcaatgtaaaaacttatgcatgaaattatgccttgcaaatttgcctgTGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA--GCG--------------------------------TCAAGT--TATT----A--AT-AG-GAT--A----------------------------------A-A-----T-----AATACCATT-C--AT-TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGA-ACA-TAT----aaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT------A-AT-TTTAATACAGAGTAATTT-CTCT-GAATTACA-TCA-T----TTTAT--GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TC--GTGCT-AATGTAAGC-AAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CAT----TAT-Tctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TA-TAAA-GCAC-GATG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGACAAACA---------------------AAC------------TT--TTAA----Aca
gi|17 : tttcttcatctat-AA-TG-TT-ACA--GCACC-------------TACCTAG---GTGACCTTCAAGAT-TATT----A--AT-AG-AATAAA----TATGCTTGCACTTGATTGGGAAAATT---AA-AATA-GA-----AGTATCATT-C--AT-TTTACATaacaaaatctgtgaatca
gi|17 : CACC-------------TACCTAG---GTGACCTTCAAGAT-TATT----A--AT-AG-AAT--A----nnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnT--GCA-T-AATGTCACC-ATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TA-TAGA-GCATA-ATG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CA-TAGA-AAATAT----TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TAATA-A-CAATAAATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC-CGA-CAGATTTA----------AAA--AAAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-AAG-GGGGGG---------------TG-----ACAATAA-TG-TTCACGATGCACC-------------TAATTAATTAGTGACCTTCAAGA--TATTTTAAA--AT-AG-AAT--AAATATACG--TGTAT---------AGAA---------------------GTACCATT-T--AT-TTTACATGCAATG---TAA--AAACTT--TG-CA-TGA------AT----A-T-GTAT------G-CT-TGCAAacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttTAA--AAATCT--TG-GA-CAACA-A-CTTG---A-C-ATATTCTGCTA-AT-TTCAATTCAGATTGTTTT-CTCT-GAATTAC-ATCA-A----CATACT-GGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TT--GCAAT-AATGTC-AA-CTAT-TCTG--TT-ATCGCGC--aatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--AT-TAGA-GCATAAATGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATA-TAGA-GCATA-ATG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA--GCGCC-------------T--TCAA---GT--------AGT--TAGT----AGGAT-A--AAT--A----TACT--TGCAT---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TA-TAGA-G-ATATATG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : ATA-ATG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAA
gi|3 : cCTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AA-TAGA-GC-TATATG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGAACA---TT-------------T--GAA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA--GCACC-------------TAATTAA---GTGACCTTCAAGA--TATT----A--AT-AG-AAT--A----TACG--TGTAT---------AAAATA---GA-AGTA-CT-----AGTACCATT-T--AT-TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------A-ATATGCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAT--GAAATTATGGTTGTA---CATAT--ATATGT-AT--TT--GCAAT-AATGT-AAA-ATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CAT----AAT-TGCTGTT---TC--AT---GAAATTCCTTATCAaatggcgaagtaaacaa
gi|30 : ATCA-TTTGACATAT--GAAACTAAGGTT---------AC--ATATGT-------------C-AATGTTCA---TAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CAT----TAT-TGATA-T---TC--AT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TT--GCAGT-AATGTCAAC-ATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CAT----TAT-TGATATT---TC--AT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACACGAACA---TTA----------AAACAAAA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TA-TAAAGGCATA-ATGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACACGAACA---TTATAAACAAATCAGT--GAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA--GC-CC-------------TAATTAA---GTGACCTTCAAGA--TATT----A--AT--G-A----A----TACG--T-TAT---------AAAATA---GA-AGTA-CT-----AGTACCATT-T--AT-TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T-------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC--GAAACTATGGTTGTA---CATAT--AT-TGCAATTATT--GCAAT-AATGTCAAA-ATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAA----TAA-TGCT-TT---TC--AT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA--GC-CC-------------TAATTAA---GTGACCTTCAAGA--TATT----A--AT--G-AAT--A------CG--T-TAT---------AAAATA---GA-AGTA-CT-----AGTACCATT-T--AT-TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T-------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC--GAAACTATGGTTGTA---CATAT--AT-TGCAATTATT--GCAAT-AATGTCAAA-ATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAA----TAA-TGCT-TT---TC--AT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT--GAAACTAAGGTT---------AC--ATATGT-------------C-AATGTTCA---TAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CAT----TAT-TGATA-T---TC--AT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CAT----CAT-TGATGTT---TT--AT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA--GCACC-------------TAGT------G-GACCTTCAAGT--TATTTTT-A--AC-TG-AA---A----TAAA--TCTAC---------AAAGT---------------------TACCACT-TCTATGTTTACATGCAATG---TAA--AAACGTA-TG-CATTGA-A-ATTAT----ATC-ATAT------CTCT-TGCAA---AGAT------------------CAGCCA-T----CATACTGGAGATTATTGAAATA---GATTT--ACAAAT-CT--TTAGACAAC-AA---CTGA-CTAT-TCTG--CT-GA----A--T-TTTCAA----T--TCAG-ATTGC--TT-TCTCTGGAAT-TAATCAT---TCATAT---GAAACTacaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-TTCAATTCAGATTGCTTT-CTCTGGAATT--AATCATT----CATAT--GAAACTATGGTTGTA----ACAT---TAT-T-AT--TT--GCAATCAATGTCAAC-ATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCAT----AAT-TGATGTT---TC--ATTTCGAAATCCCTTatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC---GCACCTATATAACAAGTATAAGTAA---ATAATCTATACCACTTATT----T--TC-AGCAAT--A-----ACG--TATAG---------AGAATA---TATATTATCTTGCAAAATGCC-TC-T--AG-GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGA-C-A-GACTTGGA-CTATATTCTGCTA-AT-TTAAATTCA--TTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT--AAAATTATGGTTGTA---GCTA-----ATGT-AT--TT--GCATA-AATGTTCAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CAT----AATCTGATGTTTTATC--AT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 11 11 11111111 44444444444444 1 111 77777777777777777777777777777777777777 11 2222 1 22 11 333333333 333 1111 111111 33333333333333 11111 11111 22222222222222222222222222222 11 1111 66666666666666666666666666666666666666666666666666666666666666666666 111111 111 2222 11 111111 555555555555555555 11 1111 11111111111 11111 2222
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 00 4 4 999 4 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 111 7 33333333333333333333333333333333333333 33 1 1111 3 3 0 55 2 6 11 666666666 000 2222 3 5 1 5 5 5 000000 88888888888888 22222 2 4 4 4 4 55555 3 2 55555555555555555555555555555 22 4444 55 2 3 44444444444444444444444444444444444444444444444444444444444444444444 1 222222 66 222 1 5 0000 66 66 4 4 000000 000000000000000000 4 1 5 5 33 4 7777 55 33333333333 2 22222 555 3 6 77 3 44 3 5555 2222 55 3 55 3 1 3 0 55 777 777
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... .. . . ... . . . .. ........ .............. . .. . . . . . . .. ... . ...................................... .. . .... . . . .. . . .. ......... ... .... . . . . . . ...... .............. ..... . . . . . ..... . . ............................. .. .... .. . . .................................................................... . ...... .. ... . . .... .. .. . . ...... .................. . . . . .. . .... .. ........... . ..... ... . . .. . .. . .... .... .. . .. . . . . .. ... ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 66 4 0 444 0 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 777 3 88888888888888888888888888888888888888 88 0 2222 2 2 0 55 5 7 00 000000000 888 6666 0 7 4 0 0 0 000000 55555555555555 55555 5 0 0 0 0 55555 6 6 22222222222222222222222222222 33 1111 00 3 6 00000000000000000000000000000000000000000000000000000000000000000000 9 888888 11 222 9 1 0000 11 22 4 4 777777 888888888888888888 4 0 0 0 00 0 0000 22 11111111111 1 55555 777 3 7 44 3 66 3 8888 0000 00 6 00 6 0 6 6 66 000 000
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-A-A-TAT----A-C-ATAT------AAT-TTCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-CAANATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------AAT-TNCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-CAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACATCTAAGTCACC-------------TTCAAGAATATAAT--GAGAAAGTTAAAA--TATT----A--GAAG-TAGTCATTCT--A----TTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACA-A-C-TGC----A-C--TATCCTGCTAAT-TTCAATTCAGATTGCTTT-CTCT-GAATTACA-TCA-T----CAAAT-GAAACTATGGTTGTA---CATAT------GT-AT--TTGCAAA-AATG-T-CAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|10 : TGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA-----G-CG--------------------------------------TCAAGT--TATT----A--ATAG-GA-------T--A----------------------------AA---------------------T-----AATACC------ATTC--AT---TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGA-ACA-TAT----aaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT------AAT-TTTAATACAGAGTAATTT-CTCT-GAATTACA-TCA-T----TTTAT-GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TCGTGCT-AATG-T-AAGCAAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CATTAT-Tctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TATAAA-GCA-C-G-A-TG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGA---CAAACAAACTTT--TAAAA--A--------ca
gi|17 : tttcttcatctat-AA-TG-TT-ACA-----G-CACC-------------T-----ACC-TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------TAAA----T-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTACATcaaaatctgtgaatca
gi|17 : -CACC-------------T-----ACC-TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------T--A----nnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnTGCA-T-AATG-T-CACCATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CATAGA-AAA-T---A-T--TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TA-ATA-ACAAT-A-AATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC----CGA-CAGAT--T--TAAAA--A--------AAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-AAG-GGGGGG---------------TG-----ACAATAA-TG-TTCACGAT---G-CACC-------------T-----AAT-TAATTAGTGACCTTCAAGA--TATTTTAAA--ATAG-AA-------T--AAATAT-ACG--TGTA---T---------AGAA--------------------------GTACC------ATTT--AT---TTTACATGCAATG---TAA--AAACTT--TG-CA-TGA------AT----A-T-GTAT------GCT-TGCAAacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttTAA--AAATCT--TG-GA-CAACA-A-CTTG---A-C-ATATTCTGCTAAT-TTCAATTCAGATTGTTTT-CTCT-GAATTAC-ATCA-A----CATACTGGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TTGCAAT-AATG-T-C-AACTAT-TCTG--TT-ATCGCGC--aatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--ATTAGA-GCA-TAA-A-TGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATATAGA-GCA-T-A-A-TG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA-----G-CGCC-------------T-------T-CAA---GT--------AGT--TAGT----AGGATA--AA-------T--A----T-ACT--TGCA---T---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TATAGA-G-A-T-ATA-TG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : CA-T-A-A-TG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAAATGGCGA--A-----G--TAAAC--A--------A
gi|3 : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AATAGA-GC--T-ATA-TG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--T---T--G--------AA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------AATATGCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAT-GAAATTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T--AAAATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|30 : ATCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TTCA---TAT-TCTG--TT-AACCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TTGCAGT-AATG-T-CAACATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACA---CGAACA-----T--TAAAACAA--------AA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TATAAAGGCA-T-A-A-TGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----TTATAAAC--AAATCAGTGAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--AT-G-A-----------A----T-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-T-CAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CC-------------T-----AAT-TAA---GTGACCTTCAAGA--TATT----A--AT-G-AA-------T--A-------CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-T-CAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TTCA---TAT-TCTG--TT-AACCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CATCAT-TGATGTT---TTAT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA-----G-CACC-------------T-----AGT-------G-GACCTTCAAGT--TATTTTT-A--ACTG-AA----------A----T-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTACATGCAATG---TAA--AAACGTA-TG-CATTGA-A-ATTAT----ATC-ATAT------acaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-TTCAATTCAGATTGCTTT-CTCTGGAATT--AATCATT----CATAT-GAAACTATGGTTGTA----ACAT---TAT-T-AT--TTGCAATCAATG-T-CAACATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCATAAT-TGATGTT---TCATTTCGAAATCCCTTctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaattttcaattcagattgctttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCTATATAACAAGTAT-----AAG-TAA---ATAATCTATACCACTTATT----T--TCAGCAA-------T--A------ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGA-C-A-GACTTGGA-CTATATTCTGCTAAT-TTAAATTCA--TTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT-AAAATTATGGTTGTA---GCTA-----ATGT-AT--TTGCATA-AATGTT-CAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CATAATCTGATGTTTTATCAT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 11 11 11111111 44444444444444 1 111 77777777777777777777777777777777777777 11 2222 1 22 11 333333333 333 1111 111111 33333333333333 11111 11111 333333333333333333333333333 11 1111 66666666666666666666666666666666666666666666666666666666666666666666 111111 111 1111 11 11111 555555555555555555 11 1111 11111111111 11111 111
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 00 4 4 999 4 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 111 7 33333333333333333333333333333333333333 33 1 1111 3 3 0 55 2 6 11 666666666 000 2222 3 5 1 5 5 5 000000 88888888888888 22222 2 4 4 4 4 55555 3 2 222222222222222222222222222 22 4444 55 2 3 44444444444444444444444444444444444444444444444444444444444444444444 1 222222 66 222 1 4 8888 55 44 4 22222 4 4 777777777777777777 5 5 5 33 4 7777 55 33333333333 2 22222 555 3 1 3 44 3 5555 999 55 3 55 3 1 3 0 55 777 777
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... .. . . ... . . . .. ........ .............. . .. . . . . . . .. ... . ...................................... .. . .... . . . .. . . .. ......... ... .... . . . . . . ...... .............. ..... . . . . . ..... . . ........................... .. .... .. . . .................................................................... . ...... .. ... . . .... .. .. . ..... . . .................. . . . .. . .... .. ........... . ..... ... . . . .. . .... ... .. . .. . . . . .. ... ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 66 4 0 444 0 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 777 3 88888888888888888888888888888888888888 88 0 2222 2 2 0 55 5 7 00 000000000 888 6666 0 7 4 0 0 0 000000 55555555555555 55555 5 0 0 0 0 55555 6 6 111111111111111111111111111 33 1111 00 3 6 00000000000000000000000000000000000000000000000000000000000000000000 9 888888 11 222 9 7 0000 55 77 0 44444 4 4 111111111111111111 0 0 0 00 0 0000 22 11111111111 1 55555 777 3 0 3 66 3 8888 666 00 6 00 6 0 6 6 66 000 000
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-A-A-TAT----A-C-ATAT-CTGCTAAT-TTCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-A-A-TAT----A-C-ATAT------AAT-TTCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAANATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACATCTAAGTCACCTTCAAGA----------ATA--TAAT--GAGAAAGTTAAAA--TATT----A--GAAG-TAGTCATTCT--A----TTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACA-A-C-TGC----A-C--TATCCTGCTAAT-TTCAATTCAGATTGCTTT-CTCT-GAATTACA-TCA-T----CAAAT-GAAACTATGGTTGTA---CATAT------GT-AT--TTGCAAA-AATG-TCAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|10 : TGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA-----G-CG-------------------------------------TCAAGT--TATT----A--ATAG-GA-------T--A----------------------------AA---------------------T-----AATACC------ATTC--AT---TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGA-ACA-TAT----aaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT------AAT-TTTAATACAGAGTAATTT-CTCT-GAATTACA-TCA-T----TTTAT-GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TCGTGCT-AATG-TAAGCAAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CATTAT-Tctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TATAAA-GCA-C-G-A-TG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGA---CAAACAAACTTT--TAAAA--A--------ca
gi|17 : tttcttcatctat-AA-TG-TT-ACA-----G-CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------TAAA----T-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTACATNNNNNN--NNNN--NNNNNNN-NN-CA-Ccaaaatctgtgaatca
gi|17 : -CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------T--A----ctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnTGCA-T-AATG-TCACCATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CATAGA-AAA-T---A-T--TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TA-ATA-ACAAT-A-AATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC----CGA-CAGAT--T--TAAAA--A--------AAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-AAG-GGGGGG---------------TG-----ACAATAA-TG-TTCACGAT---G-CACCT-----A----------AT---TAATTAGTGACCTTCAAGA--TATTTTAAA--ATAG-AA-------T--AAATAT-ACG--TGTA---T---------AGAA--------------------------GTACC------ATTT--AT---TTTACATGCAATG---TAA--AAACTT--TG-CA-TG--A-A-TAT----G-T-ATacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttTAA--AAATCT--TG-GA-CAACA-A-CTTG---A-C-ATATTCTGCTAAT-TTCAATTCAGATTGTTTT-CTCT-GAATTAC-ATCA-A----CATACTGGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TTGCAAT-AATG-TCAAC-TAT-TCTG--TT-ATCGCGC--gcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--ATTAGA-GCA-TAA-A-TGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATATAGA-GCA-T-A-A-TG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA-----G-CGCCT-----------------T---CAA---GT--------AGT--TAGT----AGGATA--AA-------T--A----T-ACT--TGCA---T---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TATAGA-G-A-T-ATA-TG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : CA-T-A-A-TG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAAATGGCGA--A-----G--TAAAC--A--------A
gi|3 : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AATAGA-GC--T-ATA-TG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--T---T--G--------AA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGA-A-A-TAT----A-C-ATAT------AATATGCAATTCAGATTGCTTT-CTCT-GAATTACAATCA-T----CATAT-GAAATTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-AAAATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|30 : ATCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TTGCAGT-AATG-TCAACATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACA---CGAACA-----T--TAAAACAA--------AA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TATAAAGGCA-T-A-A-TGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----TTATAAAC--AAATCAGTGAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-A-----------A----T-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-AA-------T--A-------CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--A-A-TAT----A-T------------AT-TGCAATTCAGATTGCTTT-CTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CATCAT-TGATGTT---TTAT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA-----G-CACCT-----A----------GT---------G-GACCTTCAAGT--TATTTTT-A--ACTG-AA----------A----T-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTACATGCAATG---TAA--AAACGTA-TG-CATTGA-A-ATTAT----ATC-ATAT------acaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-TTCAATTCAGATTGCTTT-CTCTGGAATT--AATCATT----CATAT-GAAACTATGGTTGTA----ACAT---TAT-T-AT--TTGCAATCAATG-TCAACATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCATAAT-TGATGTT---TCATTTCGAAATCCCTTctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaattttcaattcagattgctttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCT-----ATATAACAAGTATAAGTAA---ATAATCTATACCACTTATT----T--TCAGCAA-------T--A------ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGA-C-A-GACTTGGA-CTATATTCTGCTAAT-TTAAATTCA--TTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT-AAAATTATGGTTGTA---GCTA-----ATGT-AT--TTGCATA-AATGTTCAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CATAATCTGATGTTTTATCAT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 11 11 11111111 44444444444444 1 111 77777777777777777777777777777777777777 11 2222 1 22 11 333333333 333 1111 111111 33333333333333 11111 11111 333333333333333333333333333 11 1111 66666666666666666666666666666666666666666666666666666666666666666666 111111 111 1111 11 111111111111111 11111 11 1111 11111111111 11111 111
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 00 4 4 999 4 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 111 7 33333333333333333333333333333333333333 33 1 1111 3 3 0 55 2 6 11 666666666 000 2222 3 5 1 5 5 5 000000 88888888888888 22222 2 4 4 4 4 55555 3 2 222222222222222222222222222 22 4444 55 2 3 44444444444444444444444444444444444444444444444444444444444444444444 1 222222 66 222 1 4 8888 55 44 4 999999999999999 4 4 33333 88888888 5 5 33 4 7777 55 33333333333 2 22222 555 3 3 44 3 5555 999 55 3 55 3 1 3 0 55 777 777
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... .. . . ... . . . .. ........ .............. . .. . . . . . . .. ... . ...................................... .. . .... . . . .. . . .. ......... ... .... . . . . . . ...... .............. ..... . . . . . ..... . . ........................... .. .... .. . . .................................................................... . ...... .. ... . . .... .. .. . ............... . . ..... ........ . . .. . .... .. ........... . ..... ... . . .. . .... ... .. . .. . . . . .. ... ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 66 4 0 444 0 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 777 3 88888888888888888888888888888888888888 88 0 2222 2 2 0 55 5 7 00 000000000 888 6666 0 7 4 0 0 0 000000 55555555555555 55555 5 0 0 0 0 55555 6 6 111111111111111111111111111 33 1111 00 3 6 00000000000000000000000000000000000000000000000000000000000000000000 9 888888 11 222 9 7 0000 55 77 0 444444444444444 4 4 99999 33333333 0 0 00 0 0000 22 11111111111 1 55555 777 3 3 66 3 8888 666 00 6 00 6 0 6 6 66 000 000
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-AA-TAT----A-C-ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-AA-TAT----A-C-ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACATCTAAGTCACCTTCAAGA----------ATA--TAAT--GAGAAAGTTAAAA--TATT----A--GAAG-TAGTCATTCT--A----TTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACA-AC-TGC----A-C--TAT-CCTGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACA-TCA-T----CAAAT-GAAACTATGGTTGTA---CATAT------GT-AT--TTGCAAA-AATG-TCAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|10 : TGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA-----G-CG-------------------------------------TCAAGT--TATT----A--ATAG-GA-------T--A----------------------------AA---------------------T-----AATACC------ATTC--AT---TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGA-----------A-C-ATAT-C-Taaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT-C-TGGTAA--T-TTTAATACAGAGTAA-TTTCTCT-GAATTACA-TCA-T----TTTAT-GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TCGTGCT-AATG-TAAGCAAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CATTAT-Taagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcacTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TATAAA-GCA-C-G-A-TG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGA---CAAACAAACTTT--TAAAA--A--------ca
gi|17 : tttcttcatctat-AA-TG-TT-ACA-----G-CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------TAAA----T-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTACATNNNNNN--NNNN--NNNNNNN-NN-CA-Ccaaaatctgtgaatca
gi|17 : -CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------T--A----ctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnTGCA-T-AATG-TCACCATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CATAGA-AAA-T---A-T--TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TA-ATA-ACAAT-A-AATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC----CGA-CAGAT--T--TAAAA--A--------AAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-AAG-GGGGGG---------------TG-----ACAATAA-TG-TTCACGAT---G-CACCT-----A----------AT---TAATTAGTGACCTTCAAGA--TATTTTAAA--ATAG-AA-------T--AAATAT-ACG--TGTA---T---------AGAA--------------------------GTACC------ATTT--AT---TTTACATGCAATG---TAA--AAACTT--TG-CA-TG--AA-TAT----G-T-ATGC-T-TGCAAA--acaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttTAA--AAATCT--TG-GA-CAACAA-CTTG---A-C-ATATTC-TGCTAA--T-TTCAATTCAGATTGT-TTTCTCT-GAATTAC-ATCA-A----CATACTGGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TTGCAAT-AATG-TCAAC-TAT-TCTG--TT-ATCGCGC--atgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--ATTAGA-GCA-TAA-A-TGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATATAGA-GCA-T-A-A-TG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA-----G-CGCCT-----------------T---CAA---GT--------AGT--TAGT----AGGATA--AA-------T--A----T-ACT--TGCA---T---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TATAGA-G-A-T-ATA-TG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : CA-T-A-A-TG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAAATGGCGA--A-----G--TAAAC--A--------A
gi|3 : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AATAGA-GC--T-ATA-TG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--T---T--G--------AA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGA-AA-TAT----A-C-ATA-------TAA--TATGCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAT-GAAATTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-AAAATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|30 : ATCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TTGCAGT-AATG-TCAACATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACA---CGAACA-----T--TAAAACAA--------AA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TATAAAGGCA-T-A-A-TGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----TTATAAAC--AAATCAGTGAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-A-----------A----T-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--AA-TAT----A-T-AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-AA-------T--A-------CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--AA-TAT----A-T-AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CATCAT-TGATGTT---TTAT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA-----G-CACCT-----A----------GT---------G-GACCTTCAAGT--TATTTTT-A--ACTG-AA----------A----T-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTACATGCAATG---TAA--AAACGTA-TG-CATTGA-AATTAT----ATC-ATAT-C-Tacaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-C-TGCTGAATT-TTCAATTCAGATTGC-TTTCTCTGGAATT--AATCATT----CATAT-GAAACTATGGTTGTA----ACAT---TAT-T-AT--TTGCAATCAATG-TCAACATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCATAAT-TGATGTT---TCATTTCGAAATCCCTTcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaattttcaattcagattgctttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCT-----ATATAACAAGTATAAGTAA---ATAATCTATACCACTTATT----T--TCAGCAA-------T--A------ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGA-CA-GACTTGGA-CTATATTC-TGCTAA--T-TTAAATTC--ATTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT-AAAATTATGGTTGTA---GCTA-----ATGT-AT--TTGCATA-AATGTTCAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CATAATCTGATGTTTTATCAT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 11 11 11111111 44444444444444 1 111 77777777777777777777777777777777777777 11 2222 1 22 11 333333333 333 1111 111111 33333333333333 11111 11111 333333333333333333333333333 11 1111 66666666666666666666666666666666666666666666666666666666666666666666 111111 111 1111 11 111111111111111 11111 11 1111 11111111111 11111 111
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 00 4 4 999 4 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 111 7 33333333333333333333333333333333333333 33 1 1111 3 3 0 55 2 6 11 666666666 000 2222 3 5 1 5 5 5 000000 88888888888888 22222 2 4 4 4 4 55555 3 2 222222222222222222222222222 22 4444 55 2 3 44444444444444444444444444444444444444444444444444444444444444444444 1 222222 66 222 1 4 8888 55 44 4 999999999999999 4 4 33333 88888888 5 5 33 4 7777 55 33333333333 2 22222 555 3 3 44 3 5555 999 55 3 55 3 1 3 0 55 777 777
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... .. . . ... . . . .. ........ .............. . .. . . . . . . .. ... . ...................................... .. . .... . . . .. . . .. ......... ... .... . . . . . . ...... .............. ..... . . . . . ..... . . ........................... .. .... .. . . .................................................................... . ...... .. ... . . .... .. .. . ............... . . ..... ........ . . .. . .... .. ........... . ..... ... . . .. . .... ... .. . .. . . . . .. ... ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 66 4 0 444 0 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 777 3 88888888888888888888888888888888888888 88 0 2222 2 2 0 55 5 7 00 000000000 888 6666 0 7 4 0 0 0 000000 55555555555555 55555 5 0 0 0 0 55555 6 6 111111111111111111111111111 33 1111 00 3 6 00000000000000000000000000000000000000000000000000000000000000000000 9 888888 11 222 9 7 0000 55 77 0 444444444444444 4 4 99999 33333333 0 0 00 0 0000 22 11111111111 1 55555 777 3 3 66 3 8888 666 00 6 00 6 0 6 6 66 000 000
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-AA-TAT----A-C-ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-AA-TAT----A-C-ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACATCTAAGTCACCTTCAAGA----------ATA--TAAT--GAGAAAGTTAAAA--TATT----A--GAAG-TAGTCATTCT--A----TTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-TGCAATAACTTAA--AAATCT--TGACA-ACA-AC-TGC----A-C--TAT-CCTGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACA-TCA-T----CAAAT-GAAACTATGGTTGTA---CATAT------GT-AT--TTGCAAA-AATG-TCAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|10 : TGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA-----G-CG-------------------------------------TCAAGT--TATT----A--ATAG-GA-------T--A----------------------------AA---------------------T-----AATACC------ATTC--AT---TTTACATGCAAAG---TAA--AAACCTA-TG-CA-TGA-----------A-C-ATAT-C-Taaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT-C-TGGTAA--T-TTTAATACAGAGTAA-TTTCTCT-GAATTACA-TCA-T----TTTAT-GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TCGTGCT-AATG-TAAGCAAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CATTAT-Taagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcacTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TATAAA-GCA-C-G-A-TG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGA---CAAACAAACTTT--TAAAA--A--------ca
gi|17 : tttcttcatctat-AA-TG-TT-ACA-----G-CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------TAAA----T-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTACATNNNNNN--NNNN--NNNNNNN-NN-CA-Ccaaaatctgtgaatca
gi|17 : -CACCT-----A----------CC---TAG---GTGACCTTCAAGAT-TATT----A--ATAG-AA-------T--A----ctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnTGCA-T-AATG-TCACCATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CATAGA-AAA-T---A-T--TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TA-ATA-ACAAT-A-AATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC----CGA-CAGAT--T--TAAAA--A--------AAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-AAG-GGGGGG---------------TG-----ACAATAA-TG-TTCACGAT---G-CACCT-----A----------AT---TAATTAGTGACCTTCAAGA--TATTTTAAA--ATAG-AA-------T--AAATAT-ACG--TGTA---T---------AGAA--------------------------GTACC------ATTT--AT---TTTACATGCAATG---TAA--AAACTT--TG-CA-TG--AA-TAT----G-T-ATGC-T-TGCAAA--acaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttTAA--AAATCT--TG-GA-CAACAA-CTTG---A-C-ATATTC-TGCTAA--T-TTCAATTCAGATTGT-TTTCTCT-GAATTAC-ATCA-A----CATACTGGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TTGCAAT-AATG-TCAAC-TAT-TCTG--TT-ATCGCGC--atgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--ATTAGA-GCA-TAA-A-TGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATATAGA-GCA-T-A-A-TG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA-----G-CGCCT-----------------T---CAA---GT--------AGT--TAGT----AGGATA--AA-------T--A----T-ACT--TGCA---T---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TATAGA-G-A-T-ATA-TG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : CA-T-A-A-TG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAAATGGCGA--A-----G--TAAAC--A--------A
gi|3 : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AATAGA-GC--T-ATA-TG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--T---T--G--------AA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACTTA-TG-CA-TGA-AA-TAT----A-C-ATA-------TAA--TATGCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAT-GAAATTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-AAAATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|30 : ATCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TTGCAGT-AATG-TCAACATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACA---CGAACA-----T--TAAAACAA--------AA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TATAAAGGCA-T-A-A-TGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----TTATAAAC--AAATCAGTGAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-A-----------A----T-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--AA-TAT----A-T-AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--AT-G-AA-------T--A-------CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGC-ATG--T--A--AAACTTATTA-CA-TG--AA-TAT----A-T-AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATT-AA--ACT--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CATCAT-TGATGTT---TTAT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA-----G-CACCT-----A----------GT---------G-GACCTTCAAGT--TATTTTT-A--ACTG-AA----------A----T-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTACATGCAATG---TAA--AAACGTA-TG-CATTGA-AATTAT----ATC-ATAT-C-Tacaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-C-TGCTGAATT-TTCAATTCAGATTGC-TTTCTCTGGAATT--AATCATT----CATAT-GAAACTATGGTTGTA----ACAT---TAT-T-AT--TTGCAATCAATG-TCAACATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCATAAT-TGATGTT---TCATTTCGAAATCCCTTcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaattttcaattcagattgctttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCT-----ATATAACAAGTATAAGTAA---ATAATCTATACCACTTATT----T--TCAGCAA-------T--A------ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTAT-TGAGATA--CTGATAAAATCTA-TT-GA-CGA-CA-GACTTGGA-CTATATTC-TGCTAA--T-TTAAATTC--ATTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT-AAAATTATGGTTGTA---GCTA-----ATGT-AT--TTGCATA-AATGTTCAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CATAATCTGATGTTTTATCAT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
blockSeqs : A AAT C AT T TAA A . C C C TAAA A A T G A CT TGT T G AA G A TTA CA AT A G T T CA A A AT C AC C CT GT G G T C AAT AAAGGG CA G A AA A T T AG TTTA ATGTTACAT A CT A . G . A T GT TGG A TTATAAACAAATCAGTGAA AG C AACT T A T CA G C TA ATAGTGAAT CCT ATG T G T . T C AGGAG GGGGGAGGAGACGG GGGGG C T G G C AT . G ATATAACAAGTATAAGTAA CT TTAA GG A C TAAATATGCTTGCACTTGATTGGGAAAATTAAAATAGA A . CT G A A NN TA AT . CGACAGACTTGG T T ATTC CTGAATT T G AA T TTGA CT TTACTTGTA A AATTA ATC T C CT A TAT ATC CG A AT C T C GT TTA TTC
blockSeqs : . . . . . . . . . . . . . . . . . . . . G . . . . A . . . . T . . . AA . . T . . T . . G ATA . A . . AT . T . A TT ATGTTACAT A . A . . . . . T . A TTAAAACAAAA . G . T A . GT G . . ATAC CA CT A . T . . . AAGG GAA . C . . . . . . A AATTAATTA T TTT . A . TAACGTATAGAGAATATATATTATCTTGCAA G . . . A N TT . AT . CAACAACTTG . . ATTC GTAAT . . AA . TTGA T CATATGCA A AATTA CT . . . . TA C . . . . A . AT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . A . . . . . . . . TT . . C . . . . . . AT . . . . AT . . . A TT ATT G . A . . . . . T . A TTTGAA . C . . A . G G . . AAAT C TC T . T . . . AGGA TT . C . . . . . . A ACCTAG T . . A . TATACGTGTATAAAATAGAAGTACT G . . . A A CT . A . TTGAAATTAT . . ATC CTAAT . . AA . . T CATATA A AT AT . . . . T C . . . . T . GT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . A . . . . . . . . AG . . T . . . . . . AT . . . . A . . . A T AT G . A . . . . . T . . . . . . . GT A . T . . . AGGA TT . C . . . . . . A ACCTAG . . . A . ATACGTTATAAAATAGAAGTACT G . . . A A T . N . TGAAATAT . . GCT TAATA . . A . . T CATATA A AT AT . . . . T A . . . . T . GT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . G . . . . A . . . . . . . . AT . . C . . . . . . GT . . . . A . . . A T AT A . . . . . . . . . . . . . A A . . . . . GGGG GG . C . . . . . . G AATTAA . . . A . TACGTTATAAAATAGAAGTACT G . . . A A T . A . TGAATAT . . ATC CTAAT . . A . . C CATATA A AT GT . . . . T A . . . . T . GT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . G . . . . A . . . . . . . . AT . . T . . . . . . AT . . . . A . . . A T . A . . . . . . . . . . . AT AA . . . . . . . . A AATTAA . . . A . TAAATATACGTGTATAGAA G . . . A G T . A . TGAATAT . . A . . . A . . C ACAT A AT AT . . . . T C . . . . T . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . G . . . . A . . . . . . . . AT . . C . . . . . . A . . . . A . . . G C . . . . . . . . . . . . . . . . . A AATTAA . . . T . ATAAATCTACAAAGT A . . . A . T . A . TGAATAT . . . . . . A . . T GCTA A AT AT . . . . A C . . . . T . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . . T . . . . . . A TCAA . . . A . TAAAT . . . . . . T . . . TGA . . . A . . T CAA A AT TA . . . . A . . . . . C . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . AGT . . . . . . . . . . T ACA . . T . . . . T . . . . . A . A . .
blockSeqs : . . . . . . . . ACA . . C . . . . . . . . . . A .
blockSeqs : C . . . . .
blockSeqCons : **** AT* AT******* A* T******* ATT*********** NT** AGGG** ***** AATTAA********************* ****** *** T*** A* CGAATAT******** ATC** CATATA***** C**
originalCons : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-----A----------AT---TAA---GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATG--TTAA--AAACCTA-TG-CA-CGA-AA-TAT----A-C-ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
finalCons : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAAAT-------AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATAT-------ATGCAACATT-----------CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATNT--TTAGATNAA-TTAATTTG-T-ACA-TTTGGCAGGG--GGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCTAATTAA---------------------GTGACCTTCAAGA--TATT----A--ATAG-AA-------T--A----T-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTACATGCAATGT---AA--AAACCTA-TG-CACGAATAT--------A-C-ATATC--TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTACATATA-----TATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAAC--CT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT
Alignments
lowQualScore : 111111111 111111 11 11 11111111 44444444444444 1 111 77777777777777777777777777777777777777 11 2222 1 22 11 333333333 333 1111 222222 3333333333333 11111 11111 333333333333333333333333 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111 111 111 11 22222222222222222222222222222222 11 1111 11111111111 11111 2222
lowQualScore : 4 777 4 66 4 777 4 8888 4 4 4 8888 4 4 4 4 4 55 777 0 4 2 0 66 4 4 777 44 55 4 4 4 8 55 4 4 555 4 55 1 55 55 8 4 4 8 0 666666666 222222 00 4 4 999 4 8 4 11 66666666 44444444444444 3 66 2 5 6 5 5 6 88 111 7 33333333333333333333333333333333333333 33 1 1111 3 3 0 55 2 6 11 666666666 000 2222 3 5 1 5 5 5 000000 0000000000000 22222 2 4 4 4 4 55555 3 2 222222222222222222222222 22 000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222 66 222 9999 9 222 4 66 4 33333333333333333333333333333333 88888888 5 5 33 4 7777 55 33333333333 2 22222 555 3 3 44 3 5555 2222 55 3 55 3 1 3 0 55 777 777
lowQualScore : . ... . .. . ... . .... . . . .... . . . . . .. ... . . . . .. . . ... .. .. . . . . .. . . ... . .. . .. .. . . . . . ......... ...... .. . . ... . . . .. ........ .............. . .. . . . . . . .. ... . ...................................... .. . .... . . . .. . . .. ......... ... .... . . . . . . ...... ............. ..... . . . . . ..... . . ........................ .. ................................................................................. . ...... .. ... .... . ... . .. . ................................ ........ . . .. . .... .. ........... . ..... ... . . .. . .... .... .. . .. . . . . .. ... ...
lowQualScore : 4 888 4 11 4 888 4 5555 0 0 0 5555 0 0 0 0 0 55 000 9 0 9 1 11 0 0 888 88 55 0 0 0 0 55 0 0 777 0 55 4 55 55 0 0 0 0 8 111111111 888888 66 4 0 444 0 0 0 22 00000000 11111111111111 1 99 4 7 7 7 7 7 33 777 3 88888888888888888888888888888888888888 88 0 2222 2 2 0 55 5 7 00 000000000 888 6666 0 7 4 0 0 0 555555 9999999999999 55555 5 0 0 0 0 55555 6 6 000000000000000000000000 33 555555555555555555555555555555555555555555555555555555555555555555555555555555555 9 888888 11 222 4444 4 222 8 22 4 88888888888888888888888888888888 33333333 0 0 00 0 0000 22 11111111111 1 55555 777 3 3 66 3 8888 0000 00 6 00 6 0 6 6 66 000 000
consensus : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-------------AAT-TA---A-GTGACCTTCAAGA--TATT----A--ATAG----AA-------T--AT-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTAC----ATGCAATG---TAAAAACCTA-TG-CA-CG-AA--TA---T-A-C-------ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
Reference ( family-2370 ) : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---ATAT-AAGAATATACCT--TTT-AC-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATACATA----T---ATGCAACAT------T-----CGGTA--GGATAAATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--TAAAN--A--------AA------------TT--TNAA----ACTAAATGAAGACCACATA-TTGAATTCAATCGATGTA-TACTAC--ACATAGCAAT----AACACACAC--TATN-T-TTAGATNAA-TTAATTTG-T-ACA-TTTGGC-AGG-GGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-------------AAT-TA---A-GTGACCTTCAAGA--TATT----A--ATAG----AA-------T--AT-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTAC----ATGCAATG---TAAAAACCTA-TG-CA-CG-AA--TA---T-A-C-------ATAT-C-TGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-TCAACATAT-TCTG--TT-AACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATNAT-TGATGTT---TCAT---GAAATTCCTTATCA
gi|1 : CACA---TATCAT-TTAGAACAA-TTAATTTGGT-ACA-GTTGGCGAGT-GGGGGGGG------------GTT-----ACAA-AA-CT-TA-ACATCTAAGTCACCTTCAAG--------AATATA---ATGAGAAAGTTAAAA--TATT----A--GAAG----TAGTCATTCT--ATTACA--TGCAATGT---------AAAAACTTATGCATGA-AAT---T-----A-TGCCTTGCAAATTT--GCCTGTTTAT-----TGCAATAACTTAAAAATCT--TGACAACA-AC--TG---C-A-C--------TAT-CCTGCTAA--T-TTCAATTCAGATTGC-TTTCTCT-GAATTACA-TCA-T----CAAAT-GAAACTATGGTTGTA---CATAT------GT-AT--TTGCAAA-AATG-TCAAAATAT-TCTG--TT-AACCCGC--T-ATTCAA---CT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|10 : TGTA-TACTAC--ACAAAGCAAT----A-CACACA---TATC-T-TTAGATTAA-TTAACTTG-T-ACACTTTGAT------GGTGATT------------CTG-----ACAA-AC-TC-TT-ACA-----G-CG----------------------------------TCAAGT--TATT----A--ATAG----GA-------T--A------------------------AA---------------------T-----AATACC------ATTC--AT---TTTAC----ATGCAAAG---TAAAAACCTA-TG-CA-TG-A----------A-C-------ATAT-C-Taaatattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctccttctcatttcactttcacttaagttttcttaaatttgattttgaaaaattcagtttaatgtaaacaaaccttatgtatctagtttttctgccaaaagtaaacaatatgttctcttccaaagattcaagataaaagtttgaataacacatgtgacaatatcctttttaattctttccttacgcacacgtaatgcatttacaaagaagcacttattatagtattattacgatgctaacatttttttataaaataagtataaacaaggttaatacctattcaacattatttatgtgcatcttaccctgtttttct
gi|10 : actacT-C-TGGTAA--T-TTTAATACAGAGTAA-TTTCTCT-GAATTACA-TCA-T----TTTAT-GAAACGATGGTTGTATTACTTGT--ATATGT-AT--TCGTGCT-AATG-TAAGCAAAT-TATG--TT-TACCTGC--T-TTTCAA---CT--GCAG-AAAGC--AT-CATTAT-Taagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcactctggtaattttaatacagagtaatttctctgaattacatcattttatgaaacgatggttgtattacttgtatatgtattcgtgctaatgtaagcaaattatgtttacctgcttttcaactgcagaaagcatcattattca
gi|11 : actactgtatactacacaaagcaatacacacatatctttagattaattaacttgtacactttgatggtgattctgacaaactcttacagcgtcaagttattaataggataaataataccattcattttacatgcaaagtaaaaacctatgcatgaacatatctaagcttacaaaatgttctaattatcaaatgactgaaaattttggtaacaattgtactaattttggtcacTAAAAGCAA-ATACCA---TCTT-TCTAAG--AT-A---AGTGAG-AAACGACACAAAAA-G-A-AAAAAA----AAA--A-T-G-C-AATGG--TA---ATGT-AA-AATATTATT--TTT-AC-AGAATTAT---ACTGCAAAGT-ATA--GAAATT-AA-ACCTGGGTT-A-ATT--TGCA-T-GCATAA-TTTA--CTTCT--GAGTGA--AG-CAGTA-T-A-ATAAAATTAGA-T-AAAATGCAT------GCTGT--TATAAA-GCA-C-G-A-TG-TT-GTCAAC--ATACATACTAGT---ATGTAACATG-----TTACAACAGTA--GGATAACGACATTTTAAAAGAATGTTAAGAAAAA-GAAAA-GTA-TATTCATG-CAGGA---CAAACAAACTTT--TAAAA--A--------ca
gi|17 : tttcttcatctat-AA-TG-TT-ACA-----G-CACCT-------------ACC-TA---G-GTGACCTTCAAGAT-TATT----A--ATAG----AA-------TAAAT-ATGCTTGCA---CTTGATTGGGAAAA---TT-----AA-AATA-GA-----AGTATC------ATTC--AT---TTTAC----ATcaaaatctgtgaatca
gi|17 : -CACCT-------------ACC-TA---G-GTGACCTTCAAGAT-TATT----A--ATAG----AA-------T--Annnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|17 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnnTGCA-T-AATG-TCACCATAT-TCTG--TT-AACCCGC--T-ATTCAA--Caatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcataatgtcaccatattctgttaacccgctattcaact
gi|18 : aatgttacagcacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgattgggaaaattaaaatagaagtatcattcattttacatnnnnnnnnnnnnnnnnnnncacctacctaggtgaccttcaagattattaatagaataaatatgcttgcacttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCTTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AA-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TA---TTAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTAGGTT-A-ATT--TGTA-T-GCAT-T-TTTA--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-T-AAAATGCAT------TCTGT--TATAGA-GCA-T-A-A-TG-TT-GTCAACA-ATAC--C----T---ATGCAAC---------------------------ATACA-TTTAAAAGAATCTGAAGAAAAA-G-AAA-t
gi|19 : CTTTCCTCTAAAGGCAAATTACATAATTCTT-TCC-AG--AC-ATAAAATGAG-AAACGATA----AA-G-A-AATACA----AAA-TA-T-G-C-CATGCCTTA---AAGT-AAGAA-ATA-ATAATTT-ACAAGAATTTTTTAAGTTGAAACTCATGATGAAAATAAA-AGTTGGGTT-A-ATTCATGT--T-GCAA-T-TTGGACCTTAA--TAATAA--TG--AGCA-T-ACAT-------------AAATGCAT------ACTGTA-CATAGA-AAA-T---A-T--TT-GTCAAC--ATACATA----T---GTA-AAC--------------CAGTACTAGATAAATAnnnnnnnnnnnnnnnnnnnnnnnnnaagtttc
gi|2 : tCTTTCCTCTAAATGCAA-TTACCC---TCTTCTCCCAGATAT-A---AGTGAGAAAATGATA----AACG-A-AAGAC-----AAA-TA-T-G-CAAATGC--TA---ATAT-AA
gi|2 : GCAGCCT--TA--TAAAAT-AAGAGCTGGGTT-A-CAT--TGTAAT-GCTT-T-TATG--CTCATCTGAATGA--TG-CAGTA-T----TAAG-----A-----AATGCAT------TCTGT--TA-ATA-ACAAT-A-AATT-TG-GTCAACAGATACATA----T----CGCAACAT------------CAGTA--G-ATAA-TACA-T--AAAAGA-TCTGAAGAAAAA-A-AAAATCA-TATGCATGGTAAC----CGA-CAGAT--T--TAAAA--A--------AAAAATCAGTAAGTTT--TAAA----ACTAAATGA-GAACACATA-CTGAATTCAATT-------TACTAT--ATATAGCA----------TACAC--CATA-TGTTAGATAAA-T-AATTTG-TTACA-TTTGGC-A----AGGGGGG------------GTG-----ACAATAA-TG-TTCACGAT---G-CACCT-------------AAT-TAATTA-GTGACCTTCAAGA--TATTTTAAA--ATAGAATAAA-------T--AT-ACG--TGTA---T---------AGA--------------------------AGTACC------ATTT--AT---TTTAC----ATGCAATG---TAAAAACTT--TG-CA-TG-AA--TA---T-G-T-------ATGC-T-TGCAAA--acaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|2 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttctt---TAAAAATCT--TG-GA-C--AA--CAACTTGA-C-------ATATTC-TGCTAA--T-TTCAATTCAGATTGT-TTTCTCT-GAATTAC-ATCA-A----CATACTGGAAC-ATGGTTGTA---CA-A-----ATGT-AT--TTGCAAT-AATG-TCAAC-TAT-TCTG--TT-ATCGCGC--atgctctagttattaaataactaaaaatcttggacaacaacttgacatattctgctaatttcaattcagattgttttctctgaattacatcaacatactggaacatggttgtacaaatgtatttgcaataatgtcaactattctgttatcgcgc
gi|20 : ctttcctctaaatgcaattaccctcttctcccagatataagtgagaaaatgataaacgaaagacaaatatgcaaatgctaatataaacaagagactagactatgtgtccgatcagatcctatctggtcttcatacattcatacttcttgcagccttataaaataagagctgggttacattgtaatgcttttatgctcatctgaatgatgcagtattaagaaatgcattctgttaataacaataaatttggtcaacagatacatatcgcaacatcagtagataatacataaaagatctgaagaaaaaaaaaatcatatgcatggtaaccgacagatttaaaaaaaaaatcagtaagttttaaaactaaatgagaacacatactgaattcaatttactatatatagcatacaccatatgttagataaataatttgttacatttggcaagggggggtgacaataatgttcacgatgcacctaattaattagtgaccttcaagatattttaaaatagaataaatatacgtgtatagaagtaccatttattttacatgcaatgtaaaaactttgcatgaatatgtatgcttgcaaaatgctctagttattaaataacCTTTCTT---AAAGCAA-TTACTT---TCTT-TCTCAG--ATTA---AGTGAG-AAATGATA----AA-GCACAAGACA----AAAATA-T-GGC-AATGC--TA---ATATTAAAAATATGTCT--TTT-AT-AAAAATTT---AGCGCAAACT--TA--GAAAAT-AA-AGCTGGGTTTA-ATG--TGTA-TAGC-----TTT------AT--GAATGAGTTGGCAGTA-TTA-ATAAA-------T-AAAATGCAT------TCTGT--ATTAGA-GCA-TAA-A-TGTTT-GTC-ACA-ATACATA----TTTAATACTACAT------
gi|21 : tTTTCATCTAAAA-CAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAACGATA----CA-G-A-AAGACA----AAA-TA-T-G-C-AATGC--TATGTAGAT-AATAATGTACTT--TTT-AC-AGAATTTT---AGTACAGCTT-ATA--AAAATT-AA-AGCTGGATT-A-A----------------T-TTTG--CTTAT--GAATGA--AG-CAGTG-C-A-ATAAA-----A-T-AATATGCAT------TCCGTCATATAGA-GCA-T-A-A-TG-TT-GTCAA-A-ATACAT-----C---ATGCAACAT------atat
gi|22 : TGTA-TACTGC--ACGTAGCAAT-----ACACATA---TATT-C-TTAGATTTA-TTAACTTG-C-ACA-ATT-GT-A---TGGTGATT------------ATG-----ACAA-AAGTT-TT-ACA-----G-CGCCT---------------T-CA---A-GT--------AGT--TAGT----AGGATA-----AA-------T--AT-ACT--TGCA---T---------gctacaacagtagg
gi|23 : acaacTG----AA-G-A-A-GACATAAAAAA-CAAT-G-A-AATGC--CA---A-------------CTT--TTTGAC-AGA-TTTT---AGTGCGAACT-ATA----AAAT-AG-AGCTGAGAT-GTATA--TTTA-T-GCAG-T-TTTG-----AT---AATAA--TGTCAGTAGT-AGATAAA-----AAT-AAAA---ATAAAGGGTTGAT--TATAGA-G-A-T-ATA-TG-TTTGTCAACA-ATACATA----TT--ATGTACCATGTTACAT-----CGGTA--GGATAA-TAAA-TTTAAAAGAATCTGttgattggttaccgtcaaaagaaagggggaattaaaatagaaatacaattcattaaaactatataagcttgtaaaatgtactagttattaaatgactagaaatt
gi|29 : CA-T-A-A-TG-TT-GTCAACA-ATACATA----TT--ATGTAACATGTTACAT-----CGGTA--GGATAA-TACA-TTTAAAAGAATCTGAAGAAAAAGG-AAA-TCATTATGCATA-TAAAATGGCGA--A-----G--TAAAC--A--------A
gi|3 : CTTTCCTCTAAAGGCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAATGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAT-AA-AGCTGGGTT-A-ATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-ATAAA-----A-TAAAAATGCAT------TTTGT--AATAGA-GC--T-ATA-TG-TT-GTCAACG-ATACATA----T---ATGCAACAT------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----T--T---T--G--------AA------------TT--TCAA----ACTAAATGAAGACCACATA-TTGAATTCAATCAATGTA-TA--AC--ATATAGCAATAGTGAATACACACCTTATG-T-TTAGATAAA-TTAATTTG-T-ACA-TTTGGC-AGG-AGGGGGGG------------GTG-----ACAA-AA-TG-TT-ACA-----G-CACCT-------------AAT-TA---A-GTGACCTTCAAGA--TATT----A--ATAG----AA-------T--AT-ACG--TGTA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTAC----ATGCAATGT--TAAAAACTTA-TG-CA-TGAAA--TA---T-A-C-------ATA-------TAA--TATGCAATTCAGATTGC-TTTCTCT-GAATTACAATCA-T----CATAT-GAAATTATGGTTGTA---CATAT--ATATGT-AT--TTGCAAT-AATG-T-AAAATAT-TCTG--TTAAACCCGC--T-ATTCAA--CCT--GCAG-ACTGC--AT-CATAAT-TGCTGTT---TCAT---GAAATTCCTTATCA
gi|30 : ATCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAn
gi|31 : ac---CATATGCATATGT-AT--TTGCAGT-AATG-TCAACATAT-TCTG--TT-AACCTGCTAT-ATTCAA---TT--GCAG-ACTGC--AT-CATTAT-TGATATT---TCAT---GAAATTCCTTATCAaa
gi|34 : acatcatCTTTCCATTAAAGGCAA-TTACCT---TCTT-TCTCAG--AT-A---AATGGA-AAACGATA----AA-G-A-AAGACA----AAA-TA-T-G-C-CATGC--TA---ATGT-AAGAATACACCT--TTT-AC-TGAa
gi|35 : t-AC-AAAATTGT---CGTGCAGACT-AGA--GTAATT-AA-AGCTATATT-A-GTT--TGTA-T-GTAT-TCTTTG--CTTAT--GAGTAA--AG-CAGTA-T-A-ACAAA-----G-T-A
gi|36 : -AAA-TCA-TATGCATG--AACA---CGAACA-----T--TAAAACAA--------AA------------TCAGTGAA----AC-AAATGAAGACCACATATTTGAATTCAATGTATGTA-
gi|4 : TTCCTCTAAAGCCAA-TTACCT---TCTT-TCCCAG--AT-A---AGTGAG-AAAATATA----TA-G-A-AAGACA----AAA-TA-TTG-C-AATGT--TA---ATAT-AAGAATATACCT--TTT-AT-AGAATTTT---AGCGCAAACT-ATA--GAAAAC-AA-AGCTGGGTT-ATATT--TGTA-T-GCAT-T-TTTG--CTCAT--GAATGA--TG-CAGTA-T-A-AT-AA-----A-T-AAAATGCAT------TTTTG--TATAAAGGCA-T-A-A-TGTTT-GTCAAC--ATA-A-A----T---ATGCAACA-------T-----CAGTA--AGATAAATACA-TTTAGAAGAATCTGAAGAAAAA-G-AAA-TCA-TATGCATG-TAACA---CGAACA-----TTATAAAC--AAATCAGTGAA------------TT--TCAAAACTACTAAATGAAGACCACATA-TTGAATTCAAT-GAT-TACTACTATTAGCATAGTGA-----AATACACACA-TATA------------------TTG-T-ACA-TTTGGC-AGGAGGGGGGAA------------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-------------AAT-TA---A-GTGACCTTCAAGA--TATT----A--AT-G----A-----------AT-ACG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTAC----ATGC-ATG---T-AAAACTTATTA-CA-TG-AA--TA---T-A-T-------AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAc
gi|5 : -T-ACA-TTTGGC-AGG-AGGGGGGAA-----------GTG-----A-AA-AA-TG-TA-ACA-----G-C-CCT-------------AAT-TA---A-GTGACCTTCAAGA--TATT----A--AT-G----AA-------T--A---CG--T-TA---T---------AAAA---TA-----GA-AGTA-CT-----AGTACC------ATTT--AT---TTTAC----ATGC-ATG---T-AAAACTTATTA-CA-TG-AA--TA---T-A-T-------AT-----TG----------CAATTCAGATTGC-TTTCTCT-GAATTAC-ATCA-T----CATAC-GAAACTATGGTTGTA---CATAT--AT-TGCAATTATTGCAAT-AATG-TCAAAATAT-TCTG--TT-AACCCGC--A-TTTCAA---CT--GCAG-ACTGC--AT-TAATAA-TGCT-TT---TCAT---GAAATATCTTATCAaatattttaaaa
gi|6 : TTACA-TCA-TTTGACATAT-GAAACTAAGGTT---------AC--ATATGT-----------C-AATG-TT--CATAT-TCTG--TT-AACCTGC--T-ATTAAA--C-T--ACAG-ACTGC--AT-CATTAT-TGATA-T---TCAT---GAAATTCATTATCAaatattttaaaagatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattacatttcactttaaagtatttcttaaattgattttgaaaattcagtttaatgtaaacaaaccttatgtatctagttttttctgccaaagtaaacacatatgtgtctcttcaaagattcaagataaaagtttgaataacacattgatacatatctttttaattctttccttacgctacacgtaatgcatttacaaaagaagcactaatttagtatttgaatacatttctaaataagtataagacatagtgctcttacctg
gi|7 : -ATTTAA--C-T--GCAG-ACTAC--AT-CATCAT-TGATGTT---TTAT---GAAATTCATTATaatattaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagtatcttaattttttataatctcaaaaaacaattgattatgaaaaaaagaatttaatgtaaacaaactcaggtattctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnngccaaaagaaacaatctgtgtcccttccaaagataagatttcgaccattattttatatgaaaacattttctctacggattaggtaacatgcatgctacacgtaatgcatttacaagagaagcaattcattcagtaatggtatacattctaaataaaatgtttaacttttatatataagataagacataatagattcaaaatcatctctcttacctttctttctt
gi|8 : A-AA-TGGTT-ACA-----G-CACCT-------------AGT--------G-GACCTTCAAGT--TATTTTT-A--ACTG----AA----------AT-AAA--TCTA---C---------AAAG---T-----------------------TACC------ACTTCTATG--TTTAC----ATGCAATG---TAAAAACGTA-TG-CATTG-AAATTA---T-ATC-------ATAT-C-Tacaaatacttagtattttaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacattttcacttacaagttatttctttatttcttataattcatcaacaaactaattttgaaaatcaaattaataacccaaaccctgtattcgaattcttctggcaaaatacccaatctttgtcccttccaaagattcaagatcaaatttgaacattattttttatgaaagcattttctctaaggattaggtaacatgcatatccttttcaattctttccttacgccacacctgcatttacaagagaagcacttaattcagtaatgatatacatgcacatttgtttattctaaatataatgtttgcttgaagtataagacataatagatttaaaatcatgtgctcttacctttctttct
gi|8 : T-C-TGCTGAATT-TTCAATTCAGATTGC-TTTCTCTGGAATT--AATCATT----CATAT-GAAACTATGGTTGTA----ACAT---TAT-T-AT--TTGCAATCAATG-TCAACATATCTCTGCTCT-AA-CCAC--TAATTCAA--CTTCGACTG-ACTGC--TTCCATAAT-TGATGTT---TCATTTCGAAATCCCTTcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactattctgctgaattttcaattcagattgctttctctggaattaatcattcatatgaaactatggttgtaacattattatttgcaatcaatgtcaacatatctctgctctaaccactaattcaacttcgactgactgcttccataattgatgtttcatttcgaaatcccttgcatctcacaatattcattaagattaggcgttct
gi|9 : aaatggttacagcacctagtggaccttcaagttatttttaactgaaataaatctacaaagttaccacttctatgtttacatgcaatgtaaaaacgtatgcattgaaattatatcatatctcttgcaaagatcagccatcatactggagattattgaaatagatttacaaatctttagacaacaactgactat-T-TTAGATAAAGTTAATTAG-T-ACA-TTTGGC-GGG-GGGGGGGGGGGAGGAGACGGGTGGGGGGACAA-AA-TG-TT-AC------G-CACCTATATAACAAGTATAAG-TA---A-ATAATCTATACCACTTATT----T--TCAGC---AA-------T--A--ACG--TATA---G---------AGAA---TA-----TATATTATCTTGCAAAATGCC-------TCT--AG---GTTATTGAGATAC--TG---ATAAAATCTA-TT-GA-CG-A---CA---G-A-CTTGGACTATATTC-TGCTAA--T-TTAAATTC--ATTGCTTTTCTCT-GAACCTTAA-CA-T-----GTAT-AAAATTATGGTTGTA---GCTA-----ATGT-AT--TTGCATA-AATGTTCAACATA----TA--TT-TATC-------ATTCAAATCCT--AGAGAAATGCATAT-CATAATCTGATGTTTTATCAT---G-AATTCCTTATCAgcatctcacaatattcattaagattaggcgttct
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACATTTTTCACTTCAATAGTTCTTCTTATTTCTTATAATTCATCAACAAACTAATTTTGAAAATCAAATTATATAACCAACACCCTGGTATCGAATTCTTCTGACAAAACCCAATCTTTGTCCCTTCCAAAAGATTCATATCAAATTTGAATTATTTATTGAAAGCATTTCTCGGATTAGGTAAACATGCATATCCTTTTCAATTCTTTCCTTTACCACACCTGCATTTACAAGAAAGCACTTAAATTCAGTATGTATACATGCACATTTGTTATCTAAATATAATGTTTGCTTGAAGTTGAAGACATAATAGATTGGTAAAATCATGTGCTCTACCTTTCGTT
Unaligned ( gi|13 ): ATTACCTCTTTAAAGTAGTTCATATCATCTCATTAAAAAATTGAAAAATTCAATCACATATAAACAAACCCTTTGAATCTAGTCTTACTGTCAAAACAACAACTTAAATAATGTGTTTCTCTTCCACAGATTCGAGATAAAATCAATTTGAACAATATTTTATTTGCAAGCATTTCTCAATCAGGATTAGACGGCAGAGTATAGTCTTTTTATTTGTTTCTAACACTGCGCATAATGTACAGGTATGTATAAGAGAAGTATTTAATTCATTATGTTTACTCTAAAATAAAATGTCTGAACAAAAAAAAAACCTCGTAATTATTCGATCTTACCTTTGTTTCTT
Unaligned ( gi|14 ): GTATAATCTCATGAACAAATTGATTTTGAAAAATTCAAGTAGATGTAAACAAACCCATTGTATCTAGTTTTTCTTCCAAATTATCAGCTTAAACAATGTGTGTCCCTTTTACAAACTGAAGATGAAATCAATTTGAACACTATTTCATATGCAAGCATTTCTCTGTAAGGATATAGCCTACATAATTCTGTCCTTACACGACAAATAATGTATAGATCTATAAGAGAAGCGCTTCATTCAGTAATGATATACATTTGTTTATTCTAAATAAAATGTTTGCTTGAACTGTTAAGACATTATAGATTTAAAATCATGGGACTTTTGCCTTCGTTTCT
Unaligned ( gi|15 ): TCCTATAATCTCATAAACAAATATGATTTTGAAAAAAATGGTCAATTTATATATGACAAACCATATGTATCTAGTTTTTCTGCCAATATAGTATATATCTTATATATGTGTCCCTGGCCAAAGATTCAATTATAAAATTTTTGAACAACATAATATCCTTTTTAATTTTTTCCTTTACGCTACACGTAATGCATTTACAAAAGGAGCATCTGGTTAATTTCAGTAATTGTAGTATTTACATGTTACATTTGTTTATTCTAAATAGAAATTCTTATATTTAAAGACATAAAGATTTAAAATTCAGTGTGTTCTTACCTGTCTTTC
Unaligned ( gi|16 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTCACTATAAAGTATTTCTTAAATTGATTTTGAAAATTCAGTTTAATGTAAACAAACCTTATGTATACTAGTTGTTCTGCCAAAGTAAACAATATGTGTCTCTTCAAAGATTCAAAATAAAAGTTTGAATAACACAGGTGATACATATCCTTTTTAATTCTTTCCTTACGCTACACGTAATGCATTTACAAAAGAAGCACTTTATTTAGTATTGATATACATTCTAAATAA
Unaligned ( gi|24 ): ACTTATAATCTCATATATTGATTTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCCAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATTAGTCTCTAAGGATTATATGACAGACATAGCCTGTTTACATTACACAT
Unaligned ( gi|25 ): TATAATCTTCATATATTGAACTTGAAAAAAATCAATTAGATGTACAAACAAACCCTTTGTATATATTTTTCTGCCAAAATAACAATTTAAACAATGTGTGTCCCTTCCACAGATAAAATCAATTTGACTACTTCAATATTTCATATGCAAGCATTTCTCTATAGTCTCTAAGGATTATATGACAGACATAGCCTGTTACATTACACATAAT
Unaligned ( gi|26 ): TTTTAGCAACATACATGTACATCCGTTTTAATTCTTTCCTTACGCTACATGTAATGCATTTTCAAGAGAAGCACTTAATTCAGTAATGATATACATGTACATTTGTTTATTCTAAATAAATTGTTTGCTTGAAGTATAAGACATAATATATTTAAAATCATGTGCTCTTACCTGCCTTT
Unaligned ( gi|27 ): CTTCCAAAGATTCAAGATAAAAGTTTCAATAACACATGTGATACATATATCCTTTTTAATTCTTTCTTACGCTTACGAAAACGAACACTTTTGATTTTAGTATATTTGATATACCATTCTAAATAAGTTAAAGACATTAGTGCTCTACCGTCGCGA
Unaligned ( gi|28 ): ATTTACAAGAGAAGCACTTCATTCAGTAATATGATATACATTCTAAATAAAATGTTTACTGGAAGTATAAGCCATAATTATAGATTTCAAATCATCTGCTCTTATCTTTTTTTCT
Unaligned ( gi|32 ): TTATAATTCAGCGATGATATGTATATTTGTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|33 ): TAATTCAGCGATGATATGTACGATTTGTTTTGTTCTAAACAAAATGTTTGCTTAAACTATAAGACAAGATATATTTAAAATGATGTGGTCTTGCCTTTGTTTC
Unaligned ( gi|37 ): TGTAGAAAATGTGACTCTAGACTGTAGATGCATATCAGTTAAGGGTTAATCTG
Unaligned ( gi|38 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAGTT