lowQualScore : 1111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222222222222222222222 11111111111111111 11111 11111111111 1111111111111111111
lowQualScore : 1 5555555555555555555555555555555 1 22222222222222 333333333 1 1 444444 2222 2 444 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222 5555555 22 666 888888888888888888888888888888888888888888888888888888888888888 2 33 22 1 1 333 333 1 444444444 4 4 11111111111111111111111111111 1 999999 1 1 4 4 4 8888 1 1 1 4 44444444444444444 00000 4 1 777 55 333333 4 1 4 4 99999999999 99999999999999999 1 4 4 4 4 1 1 55 33 1 55555 666666 1 33 4444 1 11 4444444444 33 4 666666666 4 4 1 4 444444 1 111 22 4 4 4444 1 222 1 1 11 0000000000000000000 2222222 222 2222 11 5555555555555555555555555555555555555555555555555555555555555 44444444444 33 11 1 1 1 777 55 3 666666666666 4 3 4 333
lowQualScore : 2 3 8888888888888888888888888888888 3 55555555555555 333333333 3 3 666666 7 1111 8 4 666 0 5 55 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 888 0000000 2 77 222 2 999 444444444444444444444444444444444444444444444444444444444444444 0 6 11 77 5 5 555 555 5 777777777 0 0 88888888888888888888888888888 5 111111 6 5 7 0 0 0 5555 7 7 7 0 6 22222222222222222 6 00000 0 7 000 6 55 777777 6 0 5 6 0 6 0 00000000000 33333333333333333 5 0 0 0 6 6 6 0 7 6 5 55 11 5 33333 666666 5 11 3333 5 88 3333333333 00 2 0 333333333 6 6 0 0 7 0 333333 5 999 6 33 3 0 0 8888 7 111 3 3 66 0000000000000000000 6 2 0 3 8888888 888 2222 44 3 7777777777777777777777777777777777777777777777777777777777777 33 9 33333333333 00 33 77 1 5 7 000 11 6 8 555555555555 0 0 5 0 333
lowQualScore : . . ............................... . .............. ......... . . ...... . .... . . ... . . .. . ......................................................................................................... . ... ....... . .. ... . ... ............................................................... . . .. .. . . ... ... . ......... . . ............................. . ...... . . . . . . .... . . . . . ................. . ..... . . ... . .. ...... . . . . . . . ........... ................. . . . . . . . . . . . .. .. . ..... ...... . .. .... . .. .......... .. . . ......... . . . . . . ...... . ... . .. . . . .... . ... . . .. ................... . . . . ....... ... .... .. . ............................................................. .. . ........... .. .. .. . . . ... .. . . ............ . . . . ...
lowQualScore : 3 7 0000000000000000000000000000000 3 00000000000000 333333333 3 3 333333 3 7777 7 0 000 0 5 55 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 000 0000000 5 55 555 5 555 000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 5 5 000 000 5 555555555 0 0 00000000000000000000000000000 0 000000 0 0 0 0 0 0 0000 0 0 0 0 0 00000000000000000 0 00000 0 0 000 0 00 000000 0 0 0 0 0 0 0 00000000000 00000000000000000 0 0 0 0 0 0 0 0 0 0 5 00 00 0 00000 000000 0 00 5555 5 00 0000000000 00 5 0 000000000 0 0 0 0 0 0 000000 0 555 0 00 0 0 0 5555 0 000 3 3 33 3333333333333333333 5 2 2 2 0000000 777 7777 00 0 2222222222222222222222222222222222222222222222222222222222222 55 2 88888888888 11 66 99 4 0 0 000 66 4 0 000000000000 0 2 6 0 222
consensus : NGACCCCCCCCCCCCCCCCNCGTT--G---------------GCG-TGGT--TTGTGA-AGAATNC-TA-GTGTA---GATG-TG--AAT-GGT-GC-ATA-GT-G-AATGTCA--G-CGTGAA-TTTGCAGTANCTA-ATGGGTTCCAGTTNNCTGNAATTGGTCGT-TNAGAA-TTG-GCAAATAGATGCTGGTTGACCGACCCGCNCAATTTCANAGAAGACNNGCACTCAGAAGATTGAAGAAGTAACGAAAAGTAAAAACATTTTCACCATTGCATAGCCCGTACANAAAGGAACGGCCCNAAACNAAGGNNNAAACTATCNCNTCNTTGNCCAA-ATTCACAAACATNTCCCTTGCAAATTTCATGA-AGATNGCAGTTATTCAAATACTCAACAAAAATAGGGTATACTTTTCATTATTAAATTTATTCTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAAC-ATG----CAT--GCATTTT--CAGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATCGCATATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGGAA-CACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCATAAA-CAAAT-CTAGGAATATTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTAACAGGAACAAGTTGTCATTACAAAACGTTCCCTTTTAAATTTAGAATGCCTACGTTCGTCCCACTGGCATTGGAATNACCGGGGGAGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGATNNNNNNNNNNNNGCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATTTGATGACTGCATTGACAAGAATANCTAAAATCTAAA-CATAA-CCATTTATGCAGAAAGTTCCAAACTAAGGA-ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAAATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTG-T-CAG-AATTTCAAGCGCTCG-TTTTCGCTG-T--CCGNNTANTCTCTGNNAATA-ATC-----------CAC----TGT--GTT--ATTTTTTT-AATTG--A-TTCATATTTCTGGAAGCTT--NC----CCCCCGCGG-GTCGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGG-AAG-----------TCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAA-GAACTGACA
Reference ( gi|1 ) : AGACCCCCCCCCCTCCCCCCCG--------------------GCGTTGGT--GTGTGA-AGAATGT-TA-GTGTA---GATG-TG--AGT-GGT-GC-ATA-GT---AATGTCA--G-TGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGCTGCA--TGTTTCTATAAGAAATTGTGCAA-TA-ATGC--A-TGAT------GTACAA-----GAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-C-GTTTACAAAGGAA--GCCC---ACCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGG-A-TTATTC-AATGCTCAACTAAAATAG--TATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGGAAAATTCATAAGATTGCATTTGATAAATTGAATCATGATTAAGGAAGATGAAATTGAATAATAAACAATTACTTTATGTTCAAAAATTTTAATACACAAAAATCTGGATCTCCTTAGTTCTAACAAATATGACGAAGTACTAATCATTTTCTTTGGTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCA-AT---TTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATT-CGTTCAT-ATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAGAAA-TTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAAATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTG-T-CAGAAATTTCAAGCGCTCGTTTTTCGCTG-T--CCGCTTAAT----GCAAATA-ATC-----------CAC----TGT--ATT--ATTTTTCCCAATTG--ATTTCATATTTCTGGAAGCTT--CT----CCGCCGCGGAGTCAAGCATC--TCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCGG-AA------------TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAA-G-ACTGACA
gi|2 : GACCCCCCCCCC-CCCCTATGTTTTGT--------------GCGAT-GT--TTGTGA-AGAATGC-TA-GTGTA---GATGTTG--AATGGGT-GC-ATA-GCAG-AGTGTCA--G-TGTGAA--TGGCAGTAACT--ATGGAT-CCAG-TTGCTGAA--TG-TTCT-TCAGAA-------AA-TA-ATGC--ATTGAT-------TAC-A-----CAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACA-TTTCACCATT-CATAGCC-GTACAAAAAGGAA--GCCCAAAACAAAGGCAAAAACTAT-TCATCA-TGCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TA--AAATGG-AGTTATTCAAATACTCAAC--AAATAG--TA-AC-TTTCATTATTAAATTTA-TCTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAAC-ATG----CAT--GCATTTT--CAGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|5 : tcacCCCCCCCCCCTCCCCCCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAATAC-GAAGTGAG---AATG-TTTCATG-GGT-GCCATA-GTCAGAATGTCACAG-TGTGAA-TGTGCAGTATCTA--TGGGTTCCAGTTGCCTGCAATTGGTCGT-TAA----TTG-GCAAATAGATGCTGG-TGACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGT-AAAAA---------CATTTTCACCATTGCATAG-CCGT--ACAAAGGAACGGCCCCA-ACCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTGCAA--TTCATGA--GATTGCA-TTATTC-AATACTCAACAAAAATAGGGTATACTTTTCA-T-TTAA---TATTCTTGTTCAG-ATTGG
gi|16 : tcCCCCCCCCCCCCCCCTCA--------------------GCG--GTT--TTCTAA-AGAATTTCTA-ATTTAGGTGATG-TG--AAT-TGTAGC-ATATAT---AATG--A--GACGTGAAATTT
gi|12 : TGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCATAT---TTTGATTAATGTCAAATGTAATGA
gi|6 : TTCATCGCA-ATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGGAA-CACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCATAAA-CAAAT-CTAGGAATATTCCCTTGTCTTACAGT-ACAGTA--TCGTAACTTA-CAG-AAC-AGT-GTCATTACAAAACGTTCCCTTTTAAATT-AGAAT--C-ACGT-CGTCCCACTGACA--GGA-TG--CGGGAAAAG--GGGGGGGGG
gi|21 : TCTTACAGTTATAGTA--TCGTAACTT-ACAGGAACAA--TGTCATT
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|19 : TTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGATgggcaagggggctccatgtccaaattt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCTAAA-CATAA-CCATTTATGCAGAAAGTTCCAAACTAAGGA--TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAAATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTT-CAG-AATTTCAAGCGCTCG-TTTTCGCTGTT--CCGCATAAT----GGCAATA-ATC-----------CAC----TGTGGGTT--TTTTTTC---ATTG--A-TTCATATTTCTGGAAGCTT--AA----CCCCCGCGG-GTCGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGG-AAG-----------TCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATA-ACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCTAAA-CATAA-CCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAAATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTG-TCCAGAAaatatcg
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCACAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTG-T-CAG------CTATCATT--TCTTTCGCTG-TTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGTGT--GTTCTACTGTCTTGAATTGCGAGTTTAT---TCTGGAAGCCT--CTAACCCCCTCACGCAGT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|20 : -GCGTGGGTGTGGCCACGGTGTTTAG---------AATTTGAAGAGCTCG-TTTTCGCTG-T--TC
gi|8 : ttaacaaaagtAATA-ATC-----------CAC----TGT--GTT--ATTTTTTC--ATTG--GTT-CATATTTCTGGAAGCTTAACC----CC-CCGCAG-GTTGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGG-AAG-----------TCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAA-GAACTGGCAt
gi|9 : gcAATA-CTC-----------CAC----TG---GTT---TTTTTTTCAATGG----TTAATCTTTCTGGAAGCTT--AC----CCCACGCG---TCGAGCATC--TCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTAC-TTACACCGGAAA------------TCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAA-GAACTGACAaatatcgac
gi|11 : gcCCGCGG-GTTGAGCATC--TCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGG-AAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAA-GAACTGACAaatatcgg
gi|18 : gcCCGCGG-GTTGAGCATC--TCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCaatatcg
gi|17 : gcCCGCGG-GTTGAGCATC--TCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|4 : gcAATTACCACCCT-C-ACTCTATT--TTATA-CAAACCGG-AAG-----------TCAAGA-AGGACGTAAA-CGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAA-GAACTGACA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 88888888888888888888888888888888888888888 1 1 1 111 111 222 1 3333 11111 1 1 33 2 11 000000000000000000000000000000000000000000000000000000000 2 33333333333333333333 2 33 1 33 1111 33 111 22 22222 1 3333333333 2 33 333 11 1 1 2 2222 2 55555555 22 1 333 1 1 1 2222 1 3333 22 22 55555 2 333 22 333 1 1 2 44444444444 2 1 2222 1 2 2 1 11 2 33 11 1 2222 333 333 7777777777777 55555555555555555555555555555555555555555555555555555555555 2 1 2 1 2 1 111111111111 1 2 2 1 1 2222 1 1 5555555555555555 1 22222 1 22 33333 33333333333 1111 111 11111 22222 222222 1 33333333333
lowQualScore : 55555555555555555555555555555555555555555 0 0 1 0 777 666 111 0 3333 3 55555 0 0 66 1 77 0 3 55 1 666666666666666666666666666666666666666666666666666666666 1 22 3 11111111111111111111 7 3 88 4 00 9999 1 333 00 555 1 1 7 222 00 77777 1 5 7 7 0 4444444444 3 7 00 7 777 7 44 3 5 0 4444 0 22222222 77 2 5 555 3 4 5 5 5 2222 4 4 4 5 3333 77 33 00000 0 4 555 77 888 7 5 2 5 0 55555555555 0 5 4444 2 5 0 0 5 7 88 3 6 00 88 5 3 7 7 6666 7 6 0 444 111 11 3333333333333 1 2 2 99999999999999999999999999999999999999999999999999999999999 0 5 0 5 0 5 4 222222222222 5 0 0 2 7 1 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 33 22 77777 22 8 88888888888 7777 0 222 55555 0 22222 5 666666 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ......................................... . . . . ... ... ... . .... . ..... . . .. . .. . . .. . ......................................................... . .. . .................... . . .. . .. .... . ... .. ... . . . ... .. ..... . . . . . .......... . . .. . ... . .. . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. ... . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . . ... ... .. ............. . . . ........................................................... . . . . . . . ............ . . . . . . . . .... . . . . . ................ . . . . . ..... . . . .. .. ..... .. . ........... .... . ... ..... . ..... . ...... ... . .. . . . .. . ........... . . . .
lowQualScore : 55555555555555555555555555555555555555555 0 0 0 0 555 222 000 0 8888 2 88888 0 0 22 0 00 7 7 00 0 000000000000000000000000000000000000000000000000000000000 0 00 3 33333333333333333333 3 3 33 0 00 3333 0 000 33 000 0 0 3 333 77 33333 0 0 3 3 7 7777777777 7 3 00 3 777 3 00 3 0 0 0000 0 00000000 55 5 0 000 0 0 5 5 5 5555 0 0 0 0 0000 55 00 00000 0 0 000 55 000 3 0 5 5 0 00000000000 0 5 0000 5 5 0 0 5 3 33 7 7 33 55 5 0 3 3 3333 3 7 7 333 333 33 3333333333333 0 5 5 00000000000000000000000000000000000000000000000000000000000 0 5 0 5 0 5 0 000000000000 5 0 0 5 3 0 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 88 00 00000 00 0 00000000000 0000 8 444 66666 8 00000 6 000000 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCCCCCGTC--G-GCGTT----GGTTTGT---------------GA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGT-GC-ATAGT--GAATGTCA--G-TGTG-AA-TNTGCAGTAACTA--TGGAT-CCAGTTG-CTGCA--TGTTC-T-T-AGAA-TTG-GCAAATA-ATGC-TGAT-GA-------GC-CAATT-CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCC-GTACA-AAAGGAA--GCCC-AAACCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGG-AGTTATTCAA-TACTCAACAAAAATAG--TATACTTTTCATTATTAA---TATTCTTGTTCAGA-TTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCA-A-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTT-ACAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGG-------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGCGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTAAT---TGNAAATA-ATC-----------CAC----TGTGTT--ATTTTT-TC-AATTG---G-TTCATATTTCTGGAAGCTT-A----CCCCCCGCG-G-GTCGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCCCNCGTT--G-GCGT-----GGTTTGT---------------GA-AGAA-TNCTA-GTGTA---GATGT-G-AATGG-T-GC-ATAGT--GAATGTCA--G-CGTG-AA-TTTGCAGTANCTAA-TGGGTTCCAGTTNNCTGNAATTGGTCGT-TNAGAA-TTG-GCAAATAGATGC-TGGTTGACCGACCCGCNCAATTTCANAGAAGACNNGCACTCAGAAGATTGAAGAAGTAACGAAAAGTAAAAACATTTTCACCATTGCATAGCCCGTACANAAAGGAACGGCCCNAAACNAAGGNNNAAACTATCNCNTCNTTGNCCAA-ATTCACAAACATNTCCCTTGCAAATTTCATGA-AGATNGCAGTTATTCAAATACTCAACAAAAATAGGGTATACTTTTCATTATTAAATTTATTCTTGTTCAGA-CTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATCGCATATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGGAA-CACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCATAAA-CAAAT-CTAGGAATATTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTAACAGGAACAAGTTGTCATTACAAAACGTTCCCTTTTAAATTTAGAATGCCTACGTTCGTCCCACTGGCATTGGAATNACCGGGGGAGG-------------GGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATAT-GATGACGTACATGTACAGTTAGATNNNNNNNNNNNNGCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATTTGATGACTGCATTGACAAGAATANCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGT--CCGNNTANTCTCTGNNAATA-ATC-----------CAC----TGTGTT--ATTTTT-TT-AATTG---A-TTCATATTTCTGGAAGCTT-N----CCCCCCGCG-G-GTCGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCCCCCG------GCGTT----GGTGTGT---------------GA-AGAA-TGTTA-GTGTA---GATGT-G-AGTGG-T-GC-ATAGT---AATGTCA--G-TGTG-AAGTTTGCAGTAACTAAATGGAT-CCAGTTTGCTGCA--TGTTTCTATAAGAAATTGTGCAA-TA-ATGCATGAT----------GTACAA-----GAGAAGACCTGCACTCAGAA-ATT-------TA-C------------CATTTTCACCAAT-CATAGC--GTTTACAAAGGAA--GCCC---ACCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGG--ATTATTCAA-TGCTCAACTAAAATAG--TATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACAA----ACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCA---ATTTT-GATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGG-------------CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATT-CGTTCAT-ATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAGAAA-TTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTGT--CCGCTTAA----TGCAAATA-ATC-----------CAC----TGTATT--ATTTTTCCC-AATTG---ATTTCATATTTCTGGAAGCTT-C----TCCGCCGCG-GAGTCAAGCATC--TCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCCCGCG-G-GTTGAGCATC--TCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCATA---TTTTGATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGCAAGGGGG
gi|16 : CCCCCCCCCCCCCCC----TC--A-GCG------GTTTTCT---------------AA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTG-TAGC-ATATA--TAATG--A--GACGTGAAA-TTTctccatgtccaaattt
gi|17 : CCCGCG-G-GTTGAGCATC--TCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|18 : gCCCGCG-G-GTTGAGCATC--TCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATAT-GATGACGTACATGTACAGTTAGAT
gi|2 : CCCCCCCCCCCCCCTATGTTTTGTGCGA-----TGTTTGT---------------GA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGT-GC-ATAGCA-GAGTGTCA--G-TGTG-AA-TG-GCAGTAACTA--TGGAT-CCAGTTG-CTGAA--TGTTC-T-TCAGAA--------AATA-ATGC---ATTGA-------------TTACACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCC-GTACAAAAAGGAA--GCCCAAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGG-AGTTATTCAAATACTCAACAAA--TAG----TAACTTTCATTATTAAATTTAT-CTTGTTCAGA-CTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacgaTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGT--TC
gi|21 : TCTTACAGTTATAGTA--TCGTAACTT-ACAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATAAT----GGCAATA-ATC-----------CAC----TGTGGG--TTTTTT-TT-CATTG---A-TTCATATTTCTGGAAGCTT-A----ACCCCCGCG-G-GTCGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCCCCCGTT--G-AAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGT-GCCATAGTCAGAATGTCACAG-TGTG-AA-TGTGCAGTATCTA--TGGGTTCCAGTTGCCTGCAATTGGTCGT-T---AA-TTG-GCAAATAGATGC-TGGT-GACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCC-GTACA--AAGGAACGGCCCCAA-CCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTGCAA--TTCATGA--GATTGCA-TTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAGA-TTGG-aata
gi|6 : tcTTCATCGCA-ATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGGAA-CACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCATAAA-CAAAT-CTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTT-ACA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA---GGATG--CGGGAAAAG-------------GGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGTGTGTTCTACTGTC-TTGAATTGCGAG-TTTAT---TCTGGAAGCCT-CTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC----TGTGTT--ATTTTT-TC--ATTG---G-TTCATATTTCTGGAAGCTTAA----CCCCCCGCA-G-GTTGAGCATC--TCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC----TG-GTT--TTTTTT-TC-AAT-G---G-TTAATCTTTCTGGAAGCTT-A----CCCCACGCG----TCGAGCATC--TCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 2222 99999999999999999999 111 1 1 1 111 111 1 333 11 1 11 1 1 1 11 22222222222222222222222222222222222222222222222222222 1 000000000000000000000 1 11 33 11 1 11 11 22 22222 1 222 1 1 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 22222 1 1 4444 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 1111 22222222222222222222 9 8 777 0 0 0 0 777 666 8 0 888 88 3 88 88 3 3 3 88 55555555555555555555555555555555555555555555555555555 3 000000000000000000000 7 3 6 88 77 88 7 3 88 44 7 00 33333 3 7 7 777 2 3 7 88 7 7 7 333 7 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 1 5 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 8 8 11111 3 2 0 3 0 1 7777 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : .... .................... . . ... . . . . ... ... . . ... .. . .. .. . . . .. ..................................................... . ..................... . . . .. .. .. . . .. .. . .. ..... . . . ... . . . .. . . . ... . . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . . . .... . . . . . ................ . . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 2222 55555555555555555555 8 8 000 0 0 2 0 555 222 8 0 333 33 3 33 33 3 3 3 33 33333333333333333333333333333333333333333333333333333 3 000000000000000000000 3 3 7 33 00 33 3 3 33 00 3 77 77777 3 3 3 333 0 3 3 33 3 3 3 333 3 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 0 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 0 00000 2 5 0 2 0 0 0000 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACTA--TGGAT-CCAGTT-GC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCA-TGATG-A----------CAA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCGT--ACAAA--GGAA--GCCCAAACCAA-GGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTGAAA-TTTCATAA-AGATGGAGTTATTCAA-TACTCAACAAAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTG-T-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTAA----TGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TNTGCAGTAACTA--TGGAT-CCAGTT-GC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGC--TGATG-A-------GC-CAATT-CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCGT--ACAAAA-GGAA--GCCCAAACCAA-GGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTGAAA-TTTCATAA-AGATGGAGTTATTCAA-TACTCAACAAAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGCGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTG-T-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTAAT---TGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCC----CCCG--------------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATGT-G-AGTGG-TGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGCAA-TA-ATGCA-TGATGTA----------CAA-----GAGAAGACCTGCACTCAGAA-ATT-------TA-C------------CATTTTCACCAAT-CATAGC-GTTTACAAA--GGAA--GCCCA--CCAA-GGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTCAA-TGCTCAACTAAAATA--GTATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTG-T-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTAA----TGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCCC----CCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGATG-T-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACTA--TGGAT-CCAGTT-GC-TGAA--TGTTC-TTCA----GAA-------AATA-ATGCATTGATT-A----------------CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCCGT--ACAAAAAGGAA--GCCCAAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTGAAA-TTTC-TAA-A-ATGGAGTTATTCAAATACTCAACAAA--TA--GTA-ACTTT-CATTATTAAATTTAT-CTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCTAAAAA---GAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT-----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATAA----TGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTG-TCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCC----CCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCTA--TGGGTTCCAGTT-GCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC--TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCGT--ACAAA--GGAACGGCCCCAACCAA-GGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTGCAA-TT-CATGA--GATTGCATTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTG-T-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222 99999999999999999999 111 1 1 1 111 1 1 1 333 11 1 11 1 1 1 11 6666666666666666 1 11 1 7777777777777777 1 000000000000000000000 1 11 11 11 111 11 11 22 22222 1 222 1 1 1 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 1111 22222222222222222222 9 2 777 0 0 0 0 777 0 0 8 0 888 88 3 7 88 3 3 3 88 1111111111111111 7 3 7 00 3 9999999999999999 3 000000000000000000000 7 3 6 88 88 88 999 88 44 7 00 33333 3 7 7 777 2 3 6 88 7 7 7 7 333 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : .... .................... . . ... . . . . ... . . . . ... .. . . .. . . . .. ................ . . . .. . ................ . ..................... . . . .. .. .. ... .. .. . .. ..... . . . ... . . . .. . . . . ... . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 2222 55555555555555555555 8 5 000 0 0 2 0 555 0 0 8 0 333 33 3 3 33 3 3 3 33 0000000000000000 3 3 3 77 3 0000000000000000 3 000000000000000000000 3 3 7 33 33 33 777 33 00 3 77 77777 3 3 3 333 0 3 0 33 3 3 3 3 333 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCC----CCCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATG-TG-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACTA--TGGAT-CCAGTT-GC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCGT--AC--AAAGGAA--GCCC-AAACCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTGAAA-TTTCATAA-AGATGGAGTTATTC-AATACTCAAC-AAAATA--GTATACTTTTCATTATTAATAT---TCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCC----CCCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATG-TG-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACTA--TGGAT-CCAGTT-GC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCATGATG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCGT--AC--AAAGGAA--GCCC-AAACCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTGAAA-TTTCATAA-AGATGGAGTTATTC-AATACTCAACAAAAATA--GTATACTTTTCATTATTAATAT---TCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCC----CCCCG--------------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATG-TG-AGTGG-TGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGCAA-TA-ATGCATGATGTAC----------AA-----GAGAAGACCTGCACTCAGAA-ATT-------TA-C------------CATTTTCACCAAT-CATAGC-GTTTAC--AAAGGAA--GCCC-A--CCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTC-AATGCTCAACTAAAATA--GTATACTTTTCAATATTAATAT---TCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCC----CCCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATG-TG-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGAT-GT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACTA--TGGAT-CCAGTT-GC-TGAA--TGTTC-TTCA----GA-------AAATA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACA-TTTCACCATT-CATAGCCGT--ACAAAAAGGAA--GCCCAAAACAAAGGCAAAAACTAT-TCATCA-TGCCTAA-ATTCAC-----TGTCCCTTGAAA-TTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC--AAATA--GTA-AC-TTTCATTATTAA-ATTTATCTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAAC-ATGC----AT--GCATTTT--CAGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCC----CCCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATG-TTTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCTA--TGGGTTCCAGTT-GCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCGT--AC--AAAGGAACGGCCC-CAACCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTGCAA-TT-CATGA--GATTGCATTATTC-AATACTCAACAAAAATAGGGTATACTTTTCAT--TTAATAT---TCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 88888888888888888888888888888 111 1 1 1 111 1 1 1 333 11 1 11 1 1 1 11 6666666666666666666 1 11 1 888888888888888 1 000000000000000000000 1 11 11 11 22 11 11 22 22222 1 222 1 1 33 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 66666666666666666666666666666 9 2 777 0 0 0 0 777 0 0 8 0 888 88 3 7 88 3 3 3 88 5555555555555555555 3 7 00 3 888888888888888 3 000000000000000000000 7 3 6 88 88 88 88 88 44 7 00 33333 3 7 7 777 2 3 44 88 7 7 7 7 333 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ............................. . . ... . . . . ... . . . . ... .. . . .. . . . .. ................... . . .. . ............... . ..................... . . . .. .. .. .. .. .. . .. ..... . . . ... . . .. .. . . . . ... . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 00000000000000000000000000000 8 5 000 0 0 2 0 555 0 0 8 0 333 33 3 3 33 3 3 3 33 0000000000000000000 3 3 33 3 777777777777777 3 000000000000000000000 3 3 7 33 33 33 77 33 00 3 77 77777 3 3 3 333 0 3 00 33 3 3 3 3 333 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCC----CCCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATG-TG-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TAC--AAAGGAA--GCCC--AACCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTC-AATACTCAAC-AAAATA--GTATACTTTTCATTATTAATAT---TCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCC----CCCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATG-TG-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TAC--AAAGGAA--GCCC-AAACCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTC-AATACTCAAC-AAAATA--GTATACTTTTCATTATTAATAT---TCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCC----CCC---CG-----------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATG-TG-AGT-GGTGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGC-AATA-ATGCATGATGTAC----------A-----AGAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-CGTTTAC--AAAGGAA--GCCC---ACCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTC-AATGCTCAACTAAAATA--GTATACTTTTCAATATTAATAT---TCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCC----CCCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATG-TG-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGAT-GT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACT--ATGGAT-CCAG-TTGC-TGAA--TGTTC-TTCA----GA-------AAATA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACA-TTTCACCATT-CATAGCCG--TACAAAAAGGAA--GCCCAAAACAAAGGCAAAAACTAT-TCATCA-TGCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC--AAATA--GTA-AC-TTTCATTATTAA-ATTTATCTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAAC-ATGC----AT--GCATTTT--CAGAGAGGTCAATGCCT---AAAAAGAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCC----CCCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATG-TTTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCT--ATGGGTTCCAG-TTGCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCG--TAC--AAAGGAACGGCCC-CAACCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTG-CAATT-CATGA--GATTGCATTATTC-AATACTCAACAAAAATAGGGTATACTTTTCAT--TTAATAT---TCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 9999999999999999999999999999 111 1 1 1 111 111 1 333 11 1 11 1 1 1 11 6666666666666666666 1 11 1 888888888888888 1 000000000000000000000 1 11 11 11 33333 11 11 22 22222 1 222 1 1 2 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 2222222222222222222222222222 9 8 777 0 0 0 0 777 666 8 0 888 88 3 7 88 3 3 3 88 5555555555555555555 3 7 00 3 888888888888888 3 000000000000000000000 7 3 6 88 88 88 00000 88 44 7 00 33333 3 7 7 777 2 3 6 7 88 7 7 7 333 7 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ............................ . . ... . . . . ... ... . . ... .. . . .. . . . .. ................... . . .. . ............... . ..................... . . . .. .. .. ..... .. .. . .. ..... . . . ... . . . . .. . . . ... . . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 0000000000000000000000000000 8 8 000 0 0 2 0 555 222 8 0 333 33 3 3 33 3 3 3 33 0000000000000000000 3 3 33 3 777777777777777 3 000000000000000000000 3 3 7 33 33 33 00000 33 00 3 77 77777 3 3 3 333 0 3 7 3 33 3 3 3 333 3 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GC-AATA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAAATA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCC----CC---CG-----------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATGT-G-AGT-GGTGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGC-AATA-ATGCATGATGTAC----------A-----AGAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-CGTTTACAAA--GGAA--GCCC--A--CCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTCAA-TGCTCAACTAAAATA--GTATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCCC----CCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGATG-T-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACT--ATGGAT-CCAG-TTGC-TGAA--TGTTC-TTCA----GAA-------AATA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCCG--TACAAAAAGGAA--GCCC-AAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC-AAA-TA--GTA-ACTTT-CATTATTAAATTTAT-CTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCTAAAAA---GAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCC----CCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCT--ATGGGTTCCAG-TTGCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCG--TACAAA--GGAACGGCCCCAA--CCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTG-CAATT-CATGA--GATTGCATTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 9999999999999999999999999999 111 1 1 1 111 111 1 333 11 1 11 1 1 1 11 5555555555555555 1 1 11 1 888888888888888 1 000000000000000000000 1 11 11 11 33333 11 11 22 22222 1 222 1 1 2 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 2222222222222222222222222222 9 8 777 0 0 0 0 777 666 8 0 888 88 3 7 88 3 3 3 88 3333333333333333 3 3 7 00 3 888888888888888 3 000000000000000000000 7 3 6 88 88 88 00000 88 44 7 00 33333 3 7 7 777 2 3 6 7 88 7 7 7 333 7 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ............................ . . ... . . . . ... ... . . ... .. . . .. . . . .. ................ . . . .. . ............... . ..................... . . . .. .. .. ..... .. .. . .. ..... . . . ... . . . . .. . . . ... . . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 0000000000000000000000000000 8 8 000 0 0 2 0 555 222 8 0 333 33 3 3 33 3 3 3 33 0000000000000000 3 3 3 33 3 777777777777777 3 000000000000000000000 3 3 7 33 33 33 00000 33 00 3 77 77777 3 3 3 333 0 3 7 3 33 3 3 3 333 3 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCC----CC---CG-----------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATGT-G-AGT-GGTGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGCAA-TA-ATGCATGATGTAC----------A-----AGAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-CGTTTACAAA--GGAA--GCCC--A--CCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTCAA-TGCTCAACTAAAATA--GTATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCCC----CCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGATG-T-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACT--ATGGAT-CCAG-TTGC-TGAA--TGTTC-TTCA----GAA------AA-TA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCCG--TACAAAAAGGAA--GCCC-AAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC-AAA-TA--GTA-ACTTT-CATTATTAAATTTAT-CTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCTAAAAA---GAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCC----CCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCT--ATGGGTTCCAG-TTGCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCG--TACAAA--GGAACGGCCCCAA--CCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTG-CAATT-CATGA--GATTGCATTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 9999999999999999999999999999 111 1 1 1 111 111 1 333 11 1 11 1 1 1 11 5555555555555555 1 1 11 1 888888888888888 1 000000000000000000000 1 11 11 11 33333 11 11 22 22222 1 222 1 1 2 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 2222222222222222222222222222 9 8 777 0 0 0 0 777 666 8 0 888 88 3 7 88 3 3 3 88 3333333333333333 3 3 7 00 3 888888888888888 3 000000000000000000000 7 3 6 88 88 88 00000 88 44 7 00 33333 3 7 7 777 2 3 6 7 88 7 7 7 333 7 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ............................ . . ... . . . . ... ... . . ... .. . . .. . . . .. ................ . . . .. . ............... . ..................... . . . .. .. .. ..... .. .. . .. ..... . . . ... . . . . .. . . . ... . . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 0000000000000000000000000000 8 8 000 0 0 2 0 555 222 8 0 333 33 3 3 33 3 3 3 33 0000000000000000 3 3 3 33 3 777777777777777 3 000000000000000000000 3 3 7 33 33 33 00000 33 00 3 77 77777 3 3 3 333 0 3 7 3 33 3 3 3 333 3 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCC----CC---CG-----------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATGT-G-AGT-GGTGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGCAA-TA-ATGCATGATGTAC----------A-----AGAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-CGTTTACAAA--GGAA--GCCC--A--CCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTCAA-TGCTCAACTAAAATA--GTATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCCC----CCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGATG-T-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACT--ATGGAT-CCAG-TTGC-TGAA--TGTTC-TTCA----GAA------AA-TA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCCG--TACAAAAAGGAA--GCCC-AAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC-AAA-TA--GTA-ACTTT-CATTATTAAATTTAT-CTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCTAAAAA---GAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCC----CCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCT--ATGGGTTCCAG-TTGCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCG--TACAAA--GGAACGGCCCCAA--CCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTG-CAATT-CATGA--GATTGCATTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
blockSeqs : CCCGTTGAAGTTTTAAGGTCTGTT A T ATG T T A GGT TG T C CAG CA . T . T . C AT GTTAATTG A G A GG . CGACCCGCTCAATTT G TAACGAAAAGTAAA T G C . AA CG AAAA AC T T A AAACA . T A A G A A A GG T T T ATT T . . C . ATTG . AT . G C . T A T A A GGCG T T T G GT . T . . A . . TA T C G T . TTAAATTGTAT . A CAAA C T . . T T . . G . AA T T T A GCCT T C TT A AC . T . T . A T A . . C T . . GA T C A T TTACTTCCAGCTAATG G G T CTATC A A . T C A CTCT G T TGGGACGATTA AA TGG GTTC A G . A CGAG TA CTA T CA T CA G . . . . GAAGTCAACCG G . . .
blockSeqs : ATGTTTTGT T G T . . . . TT G . AG . . . . . . . . TTCAGAA . . . . . TA . GAAGAAGTAAA . . C . . . CAA . C . . . . . . G A . . . . . . . . . . . A . . . . . . . . C . . . . . . . . A . . A . . G G C A A C . T . C . T . . . T . A . . A A TA A . G T . G . . . . . G . . .
blockSeqs : CCCCTCA . . T . . . . G G . . . A . . A A . A . . . T . . . . T . T . . . G TC . . G T . . . . . . . G . . .
blockSeqs : . . . . . . A . . . . . . . . . G . . . G C . . . . . . . G . . .
blockSeqs : . G T . . . . . . . A . . .
blockSeqs : . G C . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : A**** G**** G** **
originalCons : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
finalCons : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAGA----ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTGG----TTCATATTTCTGGAAGCTT---ACCCCC-CGCGG--GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 9999999999999999999999999999 111 1 1 1 111 111 1 333 11 1 11 1 1 1 11 5555555555555555 1 1 11 1 888888888888888 1 000000000000000000000 1 11 11 11 33333 11 11 22 22222 1 222 1 1 2 11 222 1 1 1 1 2222 1 22222222 11 1 222 1 1 1 2222 1 2222 11 11 22222 1 222 11 22 1 1 1 44444444444 1 1 2222 1 1 1 1 11 1 11 11 1 2222 11 11 1 1 1 1 1 1 1 1 1 1 1 2222 1 1 5555555555555555 1 22222 1 1 2222 33333333333 11 111 1111 1 11111 222 1 33333333333
lowQualScore : 2222222222222222222222222222 9 8 777 0 0 0 0 777 666 8 0 888 88 3 7 88 3 3 3 88 3333333333333333 3 3 7 00 3 888888888888888 3 000000000000000000000 7 3 6 88 88 88 00000 88 44 7 00 33333 3 7 7 777 2 3 6 7 88 7 7 7 333 7 3 3 5 5 4444 5 55555555 77 1 5 111 1 1 5 5 5 2222 1 1 1 5 3333 88 66 77777 5 1 111 88 00 7 5 1 5 5 55555555555 5 5 4444 1 5 5 5 5 7 88 3 6 88 66 5 1 7 7 6666 7 6 88 7 88 5 5 5 5 5 5 1 5 5 5 1 7 3 3 6666 0 0 5 8 0 3333333333333333 0 3 3 0 6 11111 3 2 0 3 0 1 8888 1 8 88888888888 11 111 7777 6 8 8 0 0 88888 11 222 5 888 4 66 0 5 5 66 5 11111111111 1 6 6 6
lowQualScore : ............................ . . ... . . . . ... ... . . ... .. . . .. . . . .. ................ . . . .. . ............... . ..................... . . . .. .. .. ..... .. .. . .. ..... . . . ... . . . . .. . . . ... . . . . . .... . ........ .. . . ... . . . . . .... . . . . .... .. .. ..... . . ... .. .. . . . . . ........... . . .... . . . . . . .. . . .. .. . . . . .... . . .. . .. . . . . . . . . . . . . . . .... . . . . . ................ . . . . . ..... . . . . . . .... . . ........... .. ... .... . . . . . ..... .. ... . ... . .. . . . .. . ........... . . . .
lowQualScore : 0000000000000000000000000000 8 8 000 0 0 2 0 555 222 8 0 333 33 3 3 33 3 3 3 33 0000000000000000 3 3 3 33 3 777777777777777 3 000000000000000000000 3 3 7 33 33 33 00000 33 00 3 77 77777 3 3 3 333 0 3 7 3 33 3 3 3 333 3 3 3 0 0 0000 5 00000000 55 0 0 555 0 0 5 5 5 5555 0 0 0 0 0000 00 00 55555 0 0 555 00 77 3 0 0 5 5 00000000000 0 5 0000 0 5 5 5 5 3 33 3 7 33 55 5 0 3 3 0000 3 7 33 3 33 0 5 5 5 5 5 0 5 0 0 0 3 3 3 3333 0 0 6 0 8 0000000000000000 8 2 2 8 0 00000 2 5 0 2 0 0 3333 0 0 00000000000 00 888 0000 0 0 0 6 8 44444 44 000 0 222 2 99 0 0 0 99 0 77777777777 0 7 7 7
consensus : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
Reference ( family-2284 ) : NGACCCCCCCCCCCCCCC----CCCGTCG-----------------GCGTTGGT-T-TGTGA-AGAA-TGCTA-GTGTA---GATGT-G-AATGGGTGC-ATAGT--GAATGTCA--GTGTGAA-TGTGCAGTAACT--ATGGAT-CCAG-TTGC-TGCA--TGTTC-TT-A----GAATTG-GCAA-TA-ATGCATGGTG-AC----------AA---CAGAGAAGACCTGCACTCAGAA-ATT-------TAAC---------AAACATTTTCACCATT-CATAGCCG--TACAAA--GGAA--GCCC-AA--CCAAGGCATAA--TATCTCATCATTGCTTAA-ATTCACAAA--TGTCCCTTG-AAATTTCATAA-AGATGGAGTTATTCAA-TACTCAAC-AAAATA--GTATACTTTTCATTATTAA---TATTCTTGTTCAG-ATTGG-TTGTAAAGAAAAACAACAAGCAACAATTGAACAATGCTTTTATTAGCGTTTTCCCANAGAGGTCAATGCCTAAAAAAAAGAAATNACACANCTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTNTTTNTTTTTTTTNTTGTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGTGTTTTGGACTCCGTACTGACTCATGNGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTNTAAATTATATGAGTTTGACACAATTTCATCGCAA-ATTTTTGATTAATGTCAAATGTAATGAGGATTCCCAGTCNGCCATTTTACCTGAAGTTTAAATGGAAACACAATTAAATTGTATATAACGAAAGGAATGTGTCGTAACATGCATCCAAAAAAATTAACTNACAATACACTCATTCATAAAACAAATTCTAGGAATGTTCCCTTGTCTTACAGTTACAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTACAANACGTTCCCTTTNAAATTTAGAATGCCCACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAATTTCGTTCATTACACTTCCCCATGAAGATTATATTGATGACGTACATGTACAGTNAGATCTTAAAATCACGGCGGGCTGAGAAAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGANCATTTGATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-AATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGT-CAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCNTA----ATGNAAATA-ATC-----------CAC--TGT--GT----TATT-TTT-TCAATTG---G-TTCATATTTCTGGAAGCTT---ACCCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|1 : GACCCCCCCCCCTCCCC----CC---CG-----------------GCGTTGGT-G-TGTGA-AGAA-TGTTA-GTGTA---GATGT-G-AGT-GGTGC-ATAGT---AATGTCA--GTGTGAAGTTTGCAGTAACTAAATGGAT-CCAGTTTGC-TGCA--TGTTT-CT-ATAAGAAATTGTGCAA-TA-ATGCATGATGTAC----------A-----AGAGAAGACCTGCACTCAGAA-ATT-------T-AC------------CATTTTCACCAAT-CATAG-CGTTTACAAA--GGAA--GCCC--A--CCAAGGCATAA--TATCTCATCATTGCTTAATATTCACAAA--TGTCCGTTGAAAATTTCATAACAGATGGA-TTATTCAA-TGCTCAACTAAAATA--GTATACTTTTCAATATTAA---TATTCTTGTTCTGAATTGGATTGTAAAGAAAAA-AACAAGCAACA----AACAATGTTTTTATTAACGTTTTCCCACAGAGGTCAATG-CTAAAAAAAAAAAATGACACATCTA-AATTTAACACAC-ACAAATTAC-AAATTTAAGGT----GTTATTTATTTTTTTTATT-TATTTT
gi|1 : aTGTTGGTGTTTTGGACTCCG-ACTGACTTATGGGTCCGTTGATCAACATGGCATTTTAACAAAATATCCATGATCAATGCAAACTTTGTTTAAATTATATGAGTTTGACACAATTTCATCGCAA---TTTTGATTAATGTCAAATGTAATGAGGATTCC-AGTCTGCCATTT-ACCTGAAATTTAAATGGAAACACAA-----------ATAACGAAAGGAATGTGTCATA-CATGTATC----AAAATTAACTGACAATACACTCAT-CATAAAACAAATTCTAAGAATGTTTCCT-GTCTTTCAATTACAGTAATTCGTAACTTAACAGGAACTAGTTGTCATTACAAC-CGT-CCCTTTGAAATTTAGAATATC-ACGTTCGTCCCACTGACA--GGAATG--CGGGAAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAGGAACGCTAGTGTTTAAACTTTAAATAGTATCTTAAAAATAAAATCTTGAATAATTTTTGTGAGAAGGTACTGTGCCATAA-TTCGTTCA-TATACTTCCCCATGAAGATTATATTGATG-CGTACATGTACAGTAAGATCTTAAAATCACGGCGGGCTGAG-AAATTCGAAGTCAAGTATTAAATTGATGGATTGTAAGAGCATTTGGTGACTGCATTGACAAAATCAACTAAAATCTAAAACATAAACCATTTATGCAGAAAGTTCCAAACTAAGGAAATAAATTTTCCCAACCACCGTAA-ATA-GTTTCCTCACTAA-ATAC----------------AA-GCGTGGGTGTGGTCCTGGGGTGTAGTGT-CAGA-A--ATTTCAAGCGCTCGTTTTTCGCTG-T-CCGCTTA----ATGCAAATA-ATC-----------CAC--TGT--AT----TATT-TTTCCCAATTG---ATTTCATATTTCTGGAAGCTT---CTCCGC-CGCG-GAGTCAAGCAT--CTCGGCACACAATAAG-ACGGCCTTCGCATTTGAAAATTACCACCCTGCGACTCTATTCCTTATAGCACACCG-----------GAA-TCAAGATAGGACGTAAAACGAGTCTTGCGCCACCTAATGTTTGAATTAGGGGAAAG-ACTGACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggtgttggtgttttggactccgactgacttatgggtccgttgatcaacatggcattttaacaaaatatccatgatcaatgcaaactttgtttaaattatatgagtttgacacaatttcatcgcaattttgattaatgtcaaatgtaatgaggattccagtctgccatttacctgaaatttaaatggaaacacaaataacgaaaggaatgtgtcatacatgtatcaaaattaactgacaatacactcatcataaaacaaattctaagaatgtttcctgtctttcaattacagtaattcgtaacttaacaggaactagttgtcattacaaccgtccctttgaaatttagaatatcacgttcgtcccactgacaggaatgcgggaaaggcggggggggggggggggggggggggggggggggggggggggtcaggaacgctagtgtttaaactttaaatagtatcttaaaaataaaatcttgaataatttttgtgagaaggtactgtgccataattcgttcatatacttccccatgaagattatattgatgcgtacatgtacagtaagatcttaaaatcacggcgggctgagaaattcgaagtcaagtattaaattgatggattgtaagagcatttggtgactgcattgacaaaatcaactaaaatctaaaacataaaccatttatgcagaaagttccaaactaaggaaataaattttcccaaccaccgtaaatagtttcctcactaaatacaagcgtgggtgtggtcctggggtgtagtgtcagaaatttcaagcgctcgtttttcgctgtccgcttaatgcaaataatccactgtattatttttcccaattgatttcatatttctggaagcttctccgccgcggagtcaagcatctcggcacacaataagacggccttcgcatttgaaaattaccaccctgcgactctattccttatagcacaccggaatcaagataggacgtaaaacgagtcttgcgccacctaatgtttgaattaggggaaagactgaca
gi|11 : agacccccccccctcccccccggcgttggtgtgtgaagaatgttagtgtagatgtgagtggtgcatagtaatgtcagtgtgaagtttgcagtaactaaatggatccagtttgctgcatgtttctataagaaattgtgcaataatgcatgatgtacaagagaagacctgcactcagaaatttaccattttcaccaatcatagcgtttacaaaggaagcccaccaaggcataatatctcatcattgcttaatattcacaaatgtccgttgaaaatttcataacagatggattattcaatgctcaactaaaatagtatacttttcaatattaatattcttgttctgaattggattgtaaagaaaaaaacaagcaacaaacaatgtttttattaacgttttcccacagaggtcaatgctaaaaaaaaaaaatgacacatctaaatttaacacacacaaattacaaatttaaggtgttatttattttttttatttattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttggaaaattcataagattgcatttgataaattgaatcatgattaaggaagatgaaattgaataataaacaattactttatgttcaaaaattttaatacacaaaaatctggatctccttagttctaacaaatatgacgaagtactaatcattttctttggCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAG-ACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCGGAAGTCAACCGGAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACA
gi|12 : gTGTTGGTGTTTTGGACT--GTACT--TTCATGT-TCCGTTGATCAACATGACAT-----CAAAATATCCATGAT-AATGCAAACTTTGTATAAAT---ATAAGTTTGACA--ATTTCATTGCAT-ATTTT-GATTAATGTCAAATGTAATGAaatatcg
gi|13 : ATTT-GAATGCCTACGTTTGTCCTA--GGCATTAGAATCACCGGGGGAGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
gi|16 : CCCCCCCCCCC----CCCCTCA-----------------GCG--GTT-T-TCTAA-AGAATTTCTA-ATTTAGGTGATGT-G-AATTGTAGC-ATAgggcaagggggctccatgtccaaattt
gi|17 : CC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCtataatgagacgtgaaattt
gi|18 : gCC-CGCG-G-GTTGAGCAT--CTCGGCACATAATAAGGACAGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACC
gi|19 : gTTGTGAGAAG-TACTGTGCCATAATTTCGT-CATTACACTTTCCCATGAAGATTATA-TGATGACGTACATGTACAGTTAGAT
gi|2 : GACCCCCCCCCCCCCCTATGTTTTGT-------------------GCGATG-T-T-TGTGA-AGAA-TGCTA-GTGTA---GATGTTG-AATGGGTGC-ATAGCA-GAGTGTCA--GTGTGAA-TG-GCAGTAACT--ATGGAT-CCAG-TTGC-TGAA--TGTTC-TTCA----GAA------AA-TA-ATGCAT--TG-AT----------TA---CACAGAAGACCTGCACTTAGAAGATT-------TAACGAAAAGTAAAAACATTT-CACCATT-CATAGCCG--TACAAAAAGGAA--GCCC-AAAACAAAGGCAAAAACTAT-TCATCAT-GCCTAA-ATTCAC-----TGTCCCTTG-AAATTTC-TAA-A-ATGGAGTTATTCAAATACTCAAC-AAA-TA--GTA-ACTTT-CATTATTAAATTTAT-CTTGTTCAG-ACTGG-TTGTAAAGAAAAACAACAA-CAACAATTGAACA-TGC----AT--GCATTTTC--AGAGAGGTCAATGCCTAAAAA---GAAATTACACAACTATAATTTAACACACAACAAATTACAAAATTTAAGGTGGCGGTTTTTTTTTTTTTTTTTTGTGTTTT
gi|20 : tcacTTAACAA-A-------------------AGTGCGTGGGTGTGGCCACGG--TGT----T-TAG--A--ATTTGAAGAGCTCG-TTTTCGCTGTT-C
gi|21 : TCTTACAGTTATAGTA--TCGTAACTTA-CAGGAACAA--TGTCATTt
gi|3 : GCGGGCTGAGAAAATTCGAA-TCAA-TATTAAATTGATGGATTGTAAGACCATT-GATGACTGCATTGACAAGAATAACTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAGG-A-TAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCGTGGGTGTGGTCCCGGGGTGTAGTGTTCAG--A--ATTTCAAGCGCTCG-TTTTCGCTGTT-CCGCATA----ATGGCAATA-ATC-----------CAC--TGTGGGT----T-TT-TTT-TC-ATTG---A-TTCATATTTCTGGAAGCTT---AACCCC-CGCG-G-GTCGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGATGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAATAACTGACA
gi|4 : acTTAATGACTGCATTGACAAGAATACCTAAAATCT-AAACAT-AACCATTTATGCAGAAAGTTCCAAACTAAG---ATAAAATTTCCAACCCACCGTAA-ATA-GTTTCCTCAACAA-ATAC----------------AATGCATGGGTGTGGTCCTGGGGTGTAGTGTCCAG--A--Aaatatcg
gi|4 : AATTACCACCCT-C-ACTCTAT--TTTATA-CAAACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattaccaccctcactctattttatacaaaccggaagtcaagaaggacgtaaacgagtcttgcgccacctatgtttgaattaggggaaagaactgacaaata
gi|5 : ttaatgactgcattgacaagaatacctaaaatctaaacataaccatttatgcagaaagttccaaactaagataaaatttccaacccaccgtaaatagtttcctcaacaaatacaatgcatgggtgtggtcctggggtgtagtgtccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCCCCCCCCCTCCCC----CCCGTTGAAGTTTTAAGGTCTGTTGCATTGGTATGTGTGATAGAA-TACGAAGTGAG---AATGT-TTCATGGGTGCCATAGTCAGAATGTCACAGTGTGAA-TGTGCAGTATCT--ATGGGTTCCAG-TTGCCTGCAATTGGTCGTT-A------ATTG-GCAAATAGATGC-TGGTG-ACCGACCCGCTCAATTTCAGAAAAGACGGGCACTCAGAA-ATTGAAGAAGTAA----------AAACATTTTCACCATTGCATAGCCG--TACAAA--GGAACGGCCCCAA--CCAAGGGCTAA--TA-CACTTCTTTGATCA----TCATAAACATTTCCCTTG-CAATT-CATGA--GATTGCATTATTCAA-TACTCAACAAAAATAGGGTATACTTTTCAT--TTAA---TATTCTTGTTCAG-ATTGG-aata
gi|6 : tcTTCATCGCAATATTTTTGATTAATGTCAAATGTAATGAAGATTCCCAGTCGGTCATTTTACCTGAAGTTTAAATGG-AACACAATTAAATTGTATATAACGAAAGGAATGTGT-GTAACATGCATCCAAAAAAATTAACTCACAATACACTCATTCAT-AAACAAA-TCTAGGAATATTCCCTTGTCTTACAG-TACAGTA--TCGTAACTTA-CA-GAACAG--TGTCATTACAAAACGTTCCCTTTTAAA-TTAGAAT---CACG-TCGTCCCACTGACA--GG-ATG--CGGGAAAAGGGGGGGGGG
gi|7 : TAAAATGTCCAACCCACCGTAATATACGTGTACTCA-CAATATACTTACTTCCAGCTAATGAATGC-TGGATGTGGTCCCGGAGTGTAGTGT-CAGCTATCATTTC-----------TTTCGCTGTTCCCGACTACTCTCTGTAAATCTATCTGGGACGATTACACAATGT--GTGTTCTACTGTCT-TGAATTGCGAG-TTTA---TTCTGGAAGCCTCTAACCCCCTCACGCA-GT---GCTTCACTCGCAACACAATAAG-ACGGCATTCGCA
gi|8 : AATA-ATC-----------CAC--TGT--GT----TATT-TTT-TC-ATTG---G-TTCATATTTCTGGAAGCTTA--ACCCCC-CGCA-G-GTTGAGCAT--CTCGGCACACAATAAG-ACGGCATTCGCAATTGAAAATTACCACCCT-C-ACTCTAT--CTTATA-CACACCG-----------GAAGTCAAGA-AGGACGT-AAACGAGTCTTGCGCCACCT-ATGTTTGAATTAGGGGAAAGAACTGGCA
gi|9 : gcAATA-CTC-----------CAC--TG---GT----TTTT-TTT-TCAAT-G---G-TTAATCTTTCTGGAAGCTT---ACCCCA-CGCG----TCGAGCAT--CTCAACACACAACAAG-ACGGCATTCGCAATTGAAAATTAACACCCT-C-ACTCTAT--CTTACT-TACACCG-----------GAAATCAAGA-AGGAGGT-AACCGAGTCTTGCGCCACCT-ATGTTTGAATTAAGGGAAAGAACTGACAaatatcgac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAGAGAGAGAGGGCTACACGTACAGTCTATACAATTGTAACACAGCATCATAGAACATCACTAATTAAATTGTATTACACAAATATTCAATGTTTCCTTTGTAAATTTGTTTTTTTTGTAAAATTACGACTA
Unaligned ( gi|14 ): ACCCCCCCCCCCCTCTCCCCCCAAGTGGAATAGTTAATGCTCGAAGTTTGACATTGGAATATATAGAAATGTAATAGAAGTTTTACATTGGAATGTCATAAAAATGT
Unaligned ( gi|15 ): TTGATAGTACGTGTAAGGCAGAAGAGAGAAAAATCAAGTCATGACAGCGTGGAAGTTCAAAATTCTTAGTAAAAAATTGACGTTATAAAGCGATTTCG