lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 1 11 11 55555555555555555555555555 11 111 1 2222222 222 33333333 1 333333333333333333333333333333333333333 11 22 44 1 4444444444444444444 2 888888888888888888888888888888888888 1 00000000000000000000000000000000000000000000000000000000000000 22 333333333333333 222222 1 3333 111 3333 55555555555555555555555555555555555555555555555555555555555555555555555555 111 7777 77777 4 55 22 11 3333333 11 44444 2222222 11 11 000000000000000000000000000000000 222222 111 55555555555555 4 111 33 1 11 55555555 1 1 2 1 4444444 1 22222 3333 4444444 1 1 33333 444 44444444444444444444 222 11 4 222 333 555555555555555 22222 2 22 1 1 55555555555555 1 1
lowQualScore : 3 88 2 0 6 88 66 99 6 77 11111111111111111111111111 0 11 8 0 444 8 6 9999999 555 5 0 8 55555555 0 3 555555555555555555555555555555555555555 88 00 77 3 8 1111111111111111111 3 6 555555555555555555555555555555555555 3 00000000000000000000000000000000000000000000000000000000000000 55 111111111111111 9 9 0 555555 0 1111 444 4444 8 8 99999999999999999999999999999999999999999999999999999999999999999999999999 777 6 6666 66666 0 55 33 88 6 7 4444444 6 88 44444 3 5555555 33 77 111111111111111111111111111111111 8 333333 444 8 8 8 8 88888888888888 8 0 8 0 8 6 5 666 3 33 4 66 55555555 3 3 6 3 8888888 3 7 66666 2222 5555555 3 6 3 33333 777 7 6 77777777777777777777 111 88 0 555 555 777777777777777 77777 6 00 3 6 6 3 44444444444444 3 5
lowQualScore : . .. . . . .. .. .. . .. .......................... . .. . . ... . . ....... ... . . . ........ . . ....................................... .. .. .. . . ................... . . .................................... . .............................................................. .. ............... . . . ...... . .... ... .... . . .......................................................................... ... . .... ..... . .. .. .. . . ....... . .. ..... . ....... .. .. ................................. . ...... ... . . . . .............. . . . . . . . ... . .. . .. ........ . . . . ....... . . ..... .... ....... . . . ..... ... . . .................... ... .. . ... ... ............... ..... . .. . . . . .............. . .
lowQualScore : 3 33 5 6 7 77 88 88 7 77 33333333333333333333333333 8 22 0 8 000 0 0 4444444 222 0 8 0 66666666 0 0 777777777777777777777777777777777777777 33 77 00 3 3 3333333333333333333 3 0 333333333333333333333333333333333333 3 00000000000000000000000000000000000000000000000000000000000000 88 000000000000000 0 0 7 222222 0 2222 000 2222 0 0 44444444444444444444444444444444444444444444444444444444444444444444444444 000 0 0000 00000 0 00 00 33 7 3 0000000 7 33 00000 2 8888888 88 00 555555555555555555555555555555555 0 000000 000 0 0 0 0 66666666666666 0 8 0 0 0 4 0 000 2 22 5 55 00000000 3 3 7 3 0000000 3 3 33333 0000 0000000 3 0 3 33333 000 3 7 77777777777777777777 000 33 0 000 000 000000000000000 77777 7 77 3 0 7 3 00000000000000 3 5
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAA-TTGG-TCTTTGTCTTACAGGATAC-AATTTTGTN-CCTCG-AAAT-A--TTTCAAA-TACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGCG-TAGGGACTGTTTTTG-AAT--GTGGG-G-GTGGGGGNGGG-----------------CGAN--CAC--TCTA--AA---AATGG--GACA-AGC--AAATA-AAAATTTTAAAAAGA-GG----CT-TTGGA----AAGGGGGGGGGGGCAAA-CCCT--ATAT------AATGT-GACAGG-----AAG-AAAAAAAGGGGGGG-G-------CT-TT--AAT-GGAG-GG--G-GGAG---ACT---TCTA-T----ATGAT-GTGAC-GAGCAA-GTTA-AAAT--A--AAAAAGGTGCGTTT-----GAA-GGGGGA---GGGG---GGCAANC--TTC-TAA-TA----AGATAATGTG---CAANA-AAAGTACAAAAAGGCGC-----ATGANCTA--T-----NTTTTG---AAGGAGGGGGGGGGGGGCAANCAAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGGTNAGTTAATCAGT---A-GACGGGAATGA--GG-TTTTTCTTAAG-ACG-TGACGTAT-------------------AATGAT-C------AATTCTC---A-TG-CAA-TGT-A---------GATGNTTGTCA-GTTTATCC-GACATT-TCATCAC-ACCCTTCCCAAAT--ATGTCATGTACCGGGGT-CTTG-C--G---TA-CACGTT-TTGATTT-ACTAT-----TGAG-ATTTAG-AGC-ATTATT--G-AAGAGC------GGGG-GGTGGGG-TGGTAGC-TGGACTTCGTG---TGCATGTAGGCCTAAAGTAAATATA-ATATT-T---AATAATG-A-ATT--TAATTTAATAATGATATG--AATT-A-TTTGT--------AA-C---ACAAA--A--TGGGCGCT-AATACGCA-TATTAAGA-CA--T-----NGGAAGGGATGT-TGAAACTTG
Reference ( gi|2 ) : ACTTACACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAA-TTGA-TCTTTGTCTTACAGGATAC-AATTTTG-A-CCTCG-AAAT-A--TTACAAA-TACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGCG-TGGGGACTGTTTTTG-AAT--GT----G-GTGGGGGTGGG-----------------CAAA--CAA--TCTA--GA---AATGG--GACA-AGCAAAAATA-AAAATTTAAAAAAGA-GG----CT-TTGAA----AAGGGGCGAGGGGCAAAATCCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CT-TT--AAT-GGAG-GG----GGAG---ACT---TCTA-T----GTGAT-G-GAC-TAGCAA-GTTG-AAAT--A--AAAAAGGCGTGCTT-----GAA-GGGGG----GGGG---GGCAACG--TTC-TAA-TA----AAATAATGTG---CAACA-AAAGGACAAAAAGGCAC-----ATGACCTAC-T-----CTTTTG---AAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCACTTTT-AAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCG-TGATTTAATCAGT---A-GACGGGAATGA--GG-TTTTTCTTAAGGACA-TGA-G-AT-------------------AATGAT-C------AATTCTC---A-TG-CAA-TGT-A---------TA-ACTTGTCA-GTTTATCC-GACATTATCATCAC-ACCCTTCCCAAAT--CTGTCATG-ACCGAGGT-CTTG-C--A---TA-CACGTT-TTGA-TT-ACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGG-GGTGAGG-TGGTAG--TGAACTTCGTGT--TGCATGTAGGCCTAAA-TAAATATATATATTTT---AATAATGCATATT--TAA-TTAATAATGATATG--AATT-T-TTTGT--------AA-C---ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--T-----GGGA--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAA-TTGA-TCTTGTTCTTACAGAATAC-AATTTTG-T-ACTCATAAAT-ACTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGCG-T-GGGACTGTTTTTG-AAT--GTGGGGG-GTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCT----A---AATGG--GAC--AGC---AATATAAAATTTAAAAAAGATGGGCTTCT-TTGAA----AGGGGGAGGGGGGCAAACTCCTTAATATTACAGAAAAG-TAACAGG-----AAGCAAAAAAAGGGGGAGCG-------CT-TCTGAATGGGAG-GT----GG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGG-TGGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA---------AA---ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCG-GTCGGACTGTTTTTGAAAT--GT----cannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|5 : t-TA--TTGACGGGA--TG-C--GTTGGAAGC-CT----TTGA-TCTTTGTATTACAGGAT-C-A--TTTG-T-TCT----GAT-T--TTTCAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGCGCTAGGCGTTGTTTT---ATT--GT----GTGTTGGGGTGGG-----------------GTGG--CAC--TCTA--AAGATAATGG--GACA-AGC-AATATT-AACCTGTTAAAAAGG-GG----CG-TTCGA----AAGGGG-GGGGAGCAA----CT--CTAT------TATGT--AC--------GAG-GAAAACAGGGGGGG-C-------ATGTT--GAT-GGAG-GGGGGAGGGG---ACTGAGTCTATT----GTGAT-GTGACATAGCAG-GTTGTAAAT--A--AA
gi|20 : tttgccaaatactttGCACGGG-CCGGT-GGAAG-GCTAAA-TTGG-CCTTTGTCTTACATGATAC-AATTTTGTA-CCTCG-AAAcaggtttaggtggtggcaatttgataaatggtgggcaccgccaagtacaa
gi|10 : ACGTGGCCGGT-GGAATCGCTAA---TGAATTTTTGTCTTACAGTATAC-AATTTTG-T-ACTCGAAAATAA--TTTCAAA-TACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGCG-T--GGACTGTTATTG-AATCGGG----G-GTGGGGGGGGG-----------------ata
gi|19 : G-CCGGT--GGAACGCTAAA-TTAG-TCTTTG-CTTACAGGATA--AATTTTGTA-CCTCGAAAAT-A--TT------TACA--TATAAGTgggggggggggggggggggggggggggggtgggg
gi|13 : cagTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGCG-TAGG-ACTGTTTTTG-AAT--GGGGGAG-GTGGGGATCGG-----------------CAAT--C-C--TCTAATAA---AATAGTTGACACAGC--AAATA-CAAATTCTCGATAGA-GT----ATGTTGGATAGGAAGGGGGGGGGGG
gi|8 : AAACTCC--AAAT------AATGT-GACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCT-TTG-AAT-G-AG-GA----AAAG---ACT---TCTA-TCGGCATGATTGTGAC-GAGCTA-G--A-GAAT--A--AAAAGGGTGCCTTT-----TAA-GGGGG----GGGG---GGCAAAGCTTTC-TAA-TA----AAATAACGTG---CAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTACGTTTGTATTTTTG---AA----AGGGGGGGGGGC-ACCAAAAAGAAggg
gi|1 : GGGGGGG-G----------------T-GGAGCGGCCACGAAGGCAACT---TCTA-A----ATG---G-GAC--AGCAA-TATA-AAATTTA--AAAAAGATGGGCTTCTTTGAAA-GGGGGA---GGGG---GGCAAAC--TCCTTAA-TATTACAGAAAA---G---TAACAGGAAGCAAAAAAAGG
gi|5 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtggggggg-G-GAC-AAGCAATATTA-ACCT--GTTAAAAAGGGGCGTTC-----GAA-AGGGG----GGGG---AGCAAC----TC-TAT-TA----------TGTA---CGAGG-AAA--ACAGGGGGG-GC-----ATG----------------TTG---ATGGAGGGGGGAGGGGACgggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|13 : tttgccaaatacttttattgacgggatgcgttggaagcctttgatctttgtattacaggatcatttgttctgatttttcaatatgtatagttttaccaatgtgttcaggtcataggcgctaggcgttgttttattgtgtgttggggtggggtggcactctaaagataatgTT-----GAATGGGGGAGGTGGGGATCGGCAATC--CTC-TAA-TA----AAATAGT-TGACACAGCA-AA--TACAAA----TTC-----TCGATAGAG-T-----ATGTTGGATAGGAAGGGGGGGGGGGGtgagtctattgtgatgtgacatagcaggttgtaaataaacaggtttaggtggtggcaatttgataaatggtgggcaccgccaagtacaa
gi|1 : tgtaccaaacataaattccatgccatagcctaggcgtaggactgttt---GGCAAC---TTC-TAAATG----GGACA----G---CAATATAAAATTTAAAAAAG--------ATGGGCT---T-----CTTT-G---AA--AGGGGGAGGGGGGCAAACgg
gi|1 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaAAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGAGGCC-A--TGCGGTG--TTA-TCAGTTTAG-GACGGGAATGA--TGCTTTTTCTTAAG-ACACTGATGTAT-------------------AATGATGC------AATTCTTCATA-TG-CAA-TGT-A---------GATACTTGTCACGTTTATCC-GACATT-TCATCACCACCCTTCC-AAATTTCTGT-ATGTACCGGGGTACTTGAT--G---TA-CACGTTGTTGA-TTTACTAT------GAG-ATTTTGAAGCAATTATT--G-AAGAGC------AGGGTTGTGGGGCTGGTAGT-TGACCTTCGTGGA-TGCATGTAGGCCTAAAGTAAATATATATATTTTTAGAATAATG---ATT--TAATTTAATAATGATATGCTAATT-A-TTTGT--------AA-C---ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--T-----TGGAAGGGATGTGTG-AACTTGtccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|4 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatCCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCG-TTAGTCAATAA-----A-AACGGGAAAGAGCGG-CTCTACTGACAGATG-TG-----T-------------------AATATC-C------AATCATC---ACTGCCAACTGT-AGGATACTGTCA-GGTTATCA-GGTTATCTGGACATT-TCATCAT-ACTCTTCCAAACT--ATGTCATG--CCGGGGT--TTG-CTGT---TAGCACGTT-TTGATTT-ACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGG-GGGGGGG-TGGTAGCTTG-ACTTAATGTCATGTA-GTAGGCCGAAG-TAAATATA-ATATTGT---AATTGGGGAGGTTTGTAATTTAATAATGAAAT---AATTATATTTACACAATCCAAA-CTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACT-----GGGAAGGGATGC-Tg
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGtggt
gi|3 : TTAATCAGT---AAGACGGGAATGA--GG--TTTTCTTAA-CACG-TGACGTAT-------------------AATGAT-C------AATCCTC---A-TG-CAA-TGTGA---------TA-GTTTGTCA-GTT--TTC-GACATT-TCATCAC-ACC--TTCCAAAT--CT-TCATGTACCG-GGT-CTTG-C--AATGTA-CACGTT-TTGATTT-ACTA------TGAG-A-TTAG-AGC-ATTATT--GAAAGCG-------GGGG-GGTGGGG-GTGTAG--TTGACTTCGTG---TGCATGTA-GCCTAAAGTAG----------------AATAATGCATATT--TAATTTAATAATGATATG--AATT-A-TTTGT--------AACC---ACATA--A--TGGC-GCTAAATATGCA-TATTAAGA-CA--TTGGGAAGGA--GGATGT-TGA
gi|12 : gTTAATCAAT---A-AGCGGGAATGA--GG-TTTTTCTTAAG-ACA-TGC-G-GTCTACTGACATGCTGTTTCAAATGAT-C------AATTCTC---A-TG-CAA-TGT-A---------GATACTTGTCA-GTTTATCC-GACATT-TCATCAC-ACCCTT-CCAAAT--ATGTCATGTACCGGGGT-TTctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|17 : gtg-------------------AATGAT-CTACAGTAATTCTC---A-TA-TAG-TGC-A---------GATGGTGGCCA-GTTTGTCT-GAAACT-TTATAAC-A-CCTTTTCAAAT--ATATCA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA
Alignments
lowQualScore : 1 11 11 111 1 22222222 111 1 222222 111 11 77777777777777777777777777777 22222222 11 11 11111 1 11 22 2222 1 1 1111 11 222222 111 22222 1 333333333333333 11 222 222 3333333 1 11 2222 111111 1 3333 4444 1 2222 55555 8888888888 3333 1 7777777777777777777777777777777777777777777777777777777777777777777777777 222 333 1 11 11 1111111 11 1111 222 11 444444444444444444444444444 111111 111 2222222 1 11 33333 11 1 444444 1 2 2 11 1 333333 1 1 1 22 111 2 6666666666666666666666 11 111 5555555555555555 11111 11 1 1 22 11 1
lowQualScore : 0 33 5 33 77 77 5 5 111 7 6 33333333 7 6 111 6 3 000000 555 2 99 6 11 8 44 77777777777777777777777777777 66666666 33 33 88888 0 4 33 33 2 1111 2 0 0 3333 33 888888 111 77 55555 0 777777777777777 99 0 333 333 3333333 3 7 77 0000 222222 5 5555 4444 7 5555 7 6 00000 1 4444444444 1111 5 1 3333333333333333333333333333333333333333333333333333333333333333333333333 111 555 2 5 77 4 33 2 3 5555555 2 33 8888 0 3 222 8 11 3 0 8 000000000000000000000000000 6 999999 111 6 6 6 6 8888888 1 6 6 6 6 2 99 3 1 7 11 11111 33 0 3 000000 0 3 0 0 33 0 2 888888 0 0 0 8 33 2 777 2 3 2 3 0 2222222222222222222222 33 3 666 2222222222222222 88888 2 2 33 2 0 2 0 33 1 3 33 0 7
lowQualScore : . .. . .. .. .. . . ... . . ........ . . ... . . ...... ... . .. . .. . .. ............................. ........ .. .. ..... . . .. .. . .... . . . .... .. ...... ... .. ..... . ............... .. . ... ... ....... . . .. .... ...... . .... .... . .... . . ..... . .......... .... . . ......................................................................... ... ... . . .. . .. . . ....... . .. .... . . ... . .. . . . ........................... . ...... ... . . . . ....... . . . . . . .. . . . .. ..... .. . . ...... . . . . .. . . ...... . . . . .. . ... . . . . . ...................... .. . ... ................ ..... . . .. . . . . .. . . .. . .
lowQualScore : 0 88 7 44 33 11 7 7 000 1 7 00000000 3 7 777 7 3 888888 888 5 22 7 77 0 22 00000000000000000000000000000 22222222 88 22 00000 0 0 88 88 5 2222 5 0 0 8888 88 888888 555 55 00000 0 000000000000000 88 2 333 333 7777777 3 3 00 7777 000000 0 0000 3333 3 3333 7 0 00000 0 5555555555 0000 5 0 0000000000000000000000000000000000000000000000000000000000000000000000000 000 000 5 5 55 0 88 5 2 8888888 5 88 3333 8 2 000 0 00 8 8 0 777777777777777777777777777 7 222222 777 7 7 7 7 3333333 0 7 7 7 7 0 22 0 0 3 22 55555 88 0 2 555555 0 2 0 0 88 0 5 888888 0 0 5 8 88 5 555 5 2 5 2 0 8888888888888888888888 88 2 222 2222222222222222 55555 5 5 22 0 0 5 0 88 0 2 88 0 3
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAA-TTGG-TCTTTGTCTTACAGGATAC-AATTTTGT-ACCTCG-AAAT-ATTT--CAAA-TACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGCG-T-GGGACTGTTTT--TG-AATGT-GGG-GGTGGGGGTGG-----------GCGANCAC----------TCTA--AA---AATGG--GACA-AGC--AA-ATA-AAAATTTNAAAAAGA--GGCT--TTNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGG-GGGGGGCAA----TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGGT-AGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-------GCTTGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGCG-----GGGG-GGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTAAATATATATA-TT-T----AATAATG-G-A--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
Reference ( family-2282 ) : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAA-TTGG-TCTTTGTCTTACAGGATAC-AATTTTGT-NCCTCG-AAAT-ATTT--CAAA-TACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGCG-TAGGGACTGTTTT--TG-AATGT-GGG-GGTGGGGGNGG-----------GCGANCAC----------TCTA--AA---AATGG--GACA-AGC--AA-ATA-AAAATTTTAAAAAGA--GGCT--TTGGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TGACAGG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----ATGAT-GTGACG-AGCAAGTTA-AAATAAAAAAGGTGCGTTTGAAGGGGGAGGGGGGCAAN--CTTCTAATAAGATAATGTGCAANA-AAAGTACAAAAAGGCGC-----ATGANCTA-T-------NTTTTGAAGGAGGGGGGGGGGGGCAANCAAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAAGTTTCTG---CCCCCCTGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGGTNAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACG-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-------GNTTGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TATGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAG-AGC-ATTATT--G-AAGAGC------GGGG-GGTGGGG-TGGTAGCTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTAAATATA-ATA-TT-T----AATAATG-A-A--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATACGCA-TATTAAGA-CA--TNGGAAG--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAA-TTGA-TCTTGTTCTTACAGAATAC-AATTTTGT-A-CTCATAAAT-ACTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGCG-T-GGGACTGTTTT--TG-AATGTGGGG-GGTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCT----A---AATGG--GAC--AGC---A-ATATAAAATTTAAAAAAGATGGGCTTCTTTGA----AAGGGGGAGGGGGGC-AAACTCCTTAATATTACAGAAAAG-TAACAGG-----AAGCAAAAAAAGGGGGAGCG-------CTTCTGAATGGGAGGTGG
gi|1 : AAAATAAGTTTCTG---CCCCCCTGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGA-GGCCA--TGCGGT--GTT-ATCAGTTTAGGACGGGAATGATG--CTTTTTCTTAA-GACACTG----------ATGTAT-------AATGATGC------AATTCTTCATA-TGC-AA-TGTAG-AT-------ACTTGTCACGTTTATCCG-ACATT-TCATCACCACCCTT-CCAAATTTCTGT-ATGTACCGGGGTACTTGAT---GT--ACACGTTGTTGATTTACTA------TGAG-ATTTTGAAGCAATTATT--G-AAGAGC------AGGGTTGTGGGGCTGGTAGTTGACCTTCGTGGATGCAT---GTAGGCCTAAAGTAAATATATATA-TT-TTTAGAATAATG---A--TT--TAATTTAATAATGATATGCTAATTATTTGTA-A-C------------ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--TTGGAAG--GGATGTGTG-AACTTGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|10 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatACGTGGCCGGT-GGAATCGCTAA---TGAATTTTTGTCTTACAGTATAC-AATTTTGT-A-CTCGAAAATAATTT--CAAA-TACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGCG-T--GGACTGTTAT--TG-AAT-C-GGG-GGTGGGGGGGG-----------Gg
gi|12 : GTTAATCAAT---AAGCGGGAATGA-G--GTTTTTCTTAA-GACA-TGCGGTCTACTGACATGCTGTTTCAAATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-------ACTTGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTT-CCAAA--TATGTCATGTACCGGGGT-TTgggggggggggggggggggggggggggggtgggg
gi|13 : gtTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGCG-TAGG-ACTGTTTT--TG-AATGG-GGGAGGTGGGGATCG-----------GCAATC-C----------TCTAATAA---AATAGTTGACACAGC--AA-ATA-CAAATTCTCGATAGA--GTATG-TTGGATAGGAAGGGGG-GGGGGG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGG-TGGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA---------AA---ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCG-GTCGGACTGTTTT--TGAAATGT-ggg
gi|17 : t-------AATGAT-CTACAGTAATTCT---CA-TAT-AG-TGCAG-AT-------GGTGGCCA-GTTTGTCTG-AAACT-TTATAA-CA-CCTTTTCAAA--TATATCAAGTA
gi|19 : G-CCGGT-GGAA-CGCTAAA-TTAG-TCTTTG-CTTACAGGATA--AATTTTGT-ACCTCGAAAAT-ATT--------TACA--TATAAGT
gi|2 : cagCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAA-TTGA-TCTTTGTCTTACAGGATAC-AATTTTG--ACCTCG-AAAT-ATTA--CAAA-TACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGCG-TGGGGACTGTTTT--TG-AATGT-----GGTGGGGGTGG-----------GCAAACAA----------TCTA--GA---AATGG--GACA-AGCAAAA-ATA-AAAATTTAAAAAAGA--GGCT--TTGAA----AAGGGGC-GAGGGGCAAAAT-CCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGA-GGGGGA---GACT---TCTA-T----GTGAT-G-GACT-AGCAAGTTG-AAATAAAAAAGGCGTGCTTGAAGGGGG-GGGGGGCAAC--GTTCTAATAAAATAATGTGCAACA-AAAGGACAAAAAGGCAC-----ATGACCTACT-------CTTTTGAAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCAC-TTTTAAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGC-GTGATTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAAGGACA-TG----------A-G-AT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAT-A--------ACTTGTCA-GTTTATCCG-ACATTATCATCA-CACCCTTCCCAAA--TCTGTCATG-ACCGAGGT-CTTG-C---AT--ACACGTT-TTGA-TTACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGG-GGTGAGG-TGGTAG-TGAACTTCGTGT-TGCAT---GTAGGCCTAAA-TAAATATATATATTT-T----AATAATGCATA--TT--TAA-TTAATAATGATATG--AATTTTTTGTA-A-C------------ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--TGGGA----GGATGT-TGAAACTTG
gi|20 : acttaGCACGGG-CCGGT-GGAAG-GCTAAA-TTGG-CCTTTGTCTTACATGATAC-AATTTTGT-ACCTCG-AAA
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGata
gi|3 : GTTAATCAGTA--AGACGGGAATGA-G--G-TTTTCTTAA-CACG-TG----------ACGTAT-------AATGAT-C------AATCCT---CA-TGC-AA-TGT-G-ATA------GTTTGTCA-GTT--TTCG-ACATT-TCATCA-CACC--TTCCAAA--TCT-TCATGTACC-GGGT-CTTG-CAATGT--ACACGTT-TTGATTTACTA------TGAG-A-TTAG-AGC-ATTATT--G-AA-AGCG-----GGGG-GGTGGGG-GTGTAGTT-GACTTCGTG--TGCAT---GTA-GCCTAAAGTAGA-ATA-ATG-C--------AT-------A--TT--TAATTTAATAATGATATG--AATTATTTGTA-ACC------------ACATA--A--T-GGCGCTAAATATGCA-TATTAAGA-CAT-TGGGAAGGAGGATGT-TGA
gi|4 : CCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCG-TTAGTCAATAA-----AAACGGGAAAGA-GCGGCTCTACT----GACA--G----------ATGTGT-------AATATC-C------AATCAT---CACTGCCAACTGTAGGATACTGTCAGGTTATCA-GGTTATCTGGACATT-TCATCA-TACTCTTCCAAAC--TATGTCATG--CCGGGGT--TTG-CT--GTTAGCACGTT-TTGATTTACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGG-GGGGGGG-TGGTAGCTTGACTTAATG--T-CATGTAGTAGGCC-GAAGTAAATATA-ATA-TTGT----AATTGGG-G-AGGTTTGTAATTTAATAATGAAAT---AATTATATTTACA-CAATCCAAACTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACTGGGAAG--GGATGC-Tctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|5 : -TA--TTGACGGGA--TG-C--GTTGGAAGC-CT----TTGA-TCTTTGTATTACAGGAT-C-A--TTTGT-TCT-----GAT-TTTT--CAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGCGCTAGGCGTTGTTTTATTG-TGTGT-TGG-GGTGGGG-TGG----------------CAC----------TCTA--AAGATAATGG--GACA-AGC--AATATT-AACCTGTTAAAAAGG--GGCG--TTCGA----AAGGG-G-GGGGAGC-AA----CT--CTAT------TATG-T-AC--G-----AGG-AAAACAGGGGGGGC-A-------TGTT--GATGGAGGGGGGAGGGGACTGAGTCTATT----GTGAT-GTGACATAGCAGGTTGTAAATAAACAG-----GTTT--AGG----TGGTGGCAA-----TTTGATAA-ATGGTGGGCACCGCCAAGTACAAtggt
gi|8 : tttgccaaatacttt-AAAC-TCC--AAAT------AATG-TGACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCTTTG-AATGA--GGAAAA---GACT---TCTA-TCGGCATGATTGTGACG-AGCTAG--A-GAATAAAAAGGGTGCCTTTTAAGGGGG-GGGGGGCAAAGCTTTCTAATAAAATAACGTGCAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTA-CGTTTGTATTTTTGAA----AGGGGGGGGGGC-ACCAAAAAGAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11 1 1 222222222 111 1 222222 1 666666666666666666666666666666666 11 2222 11 11 2222 11 1111 2222 1 22222 11 222222 1 333333333 333333333333333 222 222 333333 1 11 1111 11111 2 4444 11 22222 444444444 2222 1 66666666666666666666666666666666666666666666666666666666666666666666666666 222 222 1 11 11 1111111 11 111 222 11 33333333333333333333333 111111 111 2222222 1 11 33333 11 1 444444 1 1 1 11 1 333333 1 22 111 1 6666666666666666666666 11 111 5555555555555555 11111 11 1 1 22 11 1
lowQualScore : 0 33 5 9 77 1 5 5 5 5 7 6 222222222 7 6 111 6 3 000000 6 6 7 3 99 6 8 8 666666666666666666666666666666666 33 0000 33 33 4444 9 1 33 4444 1 1111 0 2 33333 33 888888 0 3 333333333 777777777777777 77 0 6 333 333 222222 3 7 77 5555 00000 6 7 6666 6 7 0 77 1 66666 555555555 3333 5 1 77777777777777777777777777777777777777777777777777777777777777777777777777 111 000 1 5 77 1 33 2 3 5555555 2 33 333 0 3 222 8 11 3 0 8 88 99999999999999999999999 6 999999 111 6 6 6 6 77 1111111 6 6 6 6 2 99 1 1 7 11 11111 33 0 3 000000 0 3 5 5 33 0 2 111111 0 7 8 33 2 777 2 3 2 0 3 3 0000000000000000000000 33 3 666 2222222222222222 88888 2 2 33 0 2 0 33 3 33 0 7
lowQualScore : . .. . . .. . . . . . . . ......... . . ... . . ...... . . . . .. . . . ................................. .. .... .. .. .... . . .. .... . .... . . ..... .. ...... . . ......... ............... .. . . ... ... ...... . . .. .... ..... . . .... . . . .. . ..... ......... .... . . .......................................................................... ... ... . . .. . .. . . ....... . .. ... . . ... . .. . . . .. ....................... . ...... ... . . . . .. ....... . . . . . .. . . . .. ..... .. . . ...... . . . . .. . . ...... . . . .. . ... . . . . . . ...................... .. . ... ................ ..... . . .. . . . .. . .. . .
lowQualScore : 0 88 7 0 33 4 7 7 7 7 1 7 000000000 3 7 777 7 3 888888 7 7 8 3 22 7 0 0 000000000000000000000000000000000 88 8888 88 22 8888 2 0 88 8888 0 2222 0 5 88888 88 888888 0 2 000000000 000000000000000 22 2 5 333 333 777777 3 3 00 0000 77777 7 3 7777 7 3 7 00 0 00000 555555555 5555 5 0 00000000000000000000000000000000000000000000000000000000000000000000000000 000 000 0 5 55 0 88 5 2 8888888 5 88 000 8 2 000 0 00 8 8 0 88 11111111111111111111111 7 222222 777 7 7 7 7 33 7777777 7 7 7 7 0 22 0 0 3 22 55555 88 0 2 555555 0 2 5 5 88 0 5 555555 0 0 8 88 5 555 5 2 5 0 2 2 5555555555555555555555 88 2 222 2222222222222222 55555 5 5 22 0 5 0 88 2 88 0 3
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGCAATA--TAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGCAAA-C-CCT--ATAT------AATGT-AACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G--TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-ACT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
Reference ( family-2282 ) : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGCAA-A--TAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGCAAA-C-CCT--ATAT------AATGT-AACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA----TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGGTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-GCT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAATT-GA-TCTTGTTCTTACAGAATACAA-TTTTGTAC--TCATAAAT-ACTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGC-G-TGGG-ACTGTTTT--TG-AATGTGGG-GGGTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCTA--AA-----TGG--GACA--GCAATA--TAAAA-TTTAAAAAAGATGGGCT-TCTTTGA----AAGGGGGAGGGGGGCAAA-CTCCTTAATATTACAGAAAAGT-AACAGG-----AAGCAAAAAAAGGGGGAGCG-------CTTCTGAATGGGAGGTGG
gi|1 : AAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGA-GGCCA--TGCGGT-GTT-ATCAGTTTAGGACGGGAATGATG--CTTTTTCTTAA-GACACTG----------ATGTAT-------AATGATGC------AATTCTTCATA-TGC-AA-TGTAG-AT-ACT-------TGTCACGTTTATCCG-ACATT-TCATCACCACCCTT-CCAAATTTCTGT-ATGTACCGGGGTACTTGAT---GT--ACACGTTGTTGATTTACTA------TGAG-ATTTTGAAGCAATTATT--G-AAGAGC-----AGGGTTGTGGGGCTGGTAGTTGACCTTCGTGGATGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-TTTAGAATAAT---GA--TT--TAATTTAATAATGATATGCTAATTATTTGTA-A-C------------ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--TTGGAAG--GGATGTGTG-AACTTGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|10 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatACGTGGCCGGT-GGAATCGCTAA--T-GAATTTTTGTCTTACAGTATACAA-TTTTGTA-C-TCGAAAATAATTT--CAAAT-ACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGC-G-T-GG-ACTGTTAT--TG-AAT-CGGG-GG-TGGGGG----------GGG-Gg
gi|12 : GTTAATCAAT---AAGCGGGAATGA-G--GTTTTTCTTAA-GACA-TGCGGTCTACTGACATGCTGTTTCAAATGAT-C------AATTCT---CA-TGC-AA-TGTAG-AT-ACT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTT-CCAAA--TATGTCATGTACCGGGGT-TTgggggggggggggggggggggggggggggtgggg
gi|13 : gtTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGC-G-TAGG-ACTGTTTT--TG-AATGGGGGAGG-TGGGGA----------TCG-GCAATC-C----------TCTAATAA---AATAGTTGACACAGCAA-A--TACAAATTCTCGATAGA--GTATGT--TGGATAGGAAGGGGG-GGGGGG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGGT-GGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA----------AA--ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCGG-TCGG-ACTGTTTT--TGAAATGTggg
gi|17 : t-------AATGAT-CTACAGTAATTCT---CA-TAT-AG-TGCAG-AT-GGT-------GGCCA-GTTTGTCTG-AAACT-TTATAA-CA-CCTTTTCAAA--TATATCAAGTA
gi|19 : G-CCGGT-GGAA-CGCTAAATT-AG-TCTTTG-CTTACAGGATA-AA-TTTTGTACC-TCGAAAAT-ATT-------T-ACA--TATAAGT
gi|2 : cagCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAATT-GA-TCTTTGTCTTACAGGATACAA-TTTTG-ACC-TCG-AAAT-ATTA--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGGGACTGTTTT--TG-AATGTGG-----TGGGGG----------TGG-GCAAACAA----------TCTA--GA---AATGG--GACA-AGCAA-AAATAAAAATTTAAAAAAGA--GGCT-T--TGAA----AAGGGGC-GAGGGGCAAAAT-CCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGG-A---GACT---TCTA-T----GTGAT-G-GACT-AGCAAGTTG-AAATAAAAAAGGCGTGCTTGAAGGGGGGGGGGGCAACG--TTCTAATAAAATAATGTGCAACA-AAAGGACAAAAAGGCAC-----ATGACCTACT-------CTTTTGAAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCAC-TTTTAAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTGATTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAAGGACA-TG----------A-G-AT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAT-A--ACT-------TGTCA-GTTTATCCG-ACATTATCATCA-CACCCTTCCCAAA--TCTGTCATG-ACCGAGGT-CTTG-C---AT--ACACGTT-TTGA-TTACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGGGGTGAGG-TGGTAG-TGAACTTCGTGT-TGCAT---GTAGGCCTAAA-TA-AATATATATATTT-T----AATAATGCATA--TT--TAA-TTAATAATGATATG--AATTTTTTGTA-A-C------------ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--TGGGA----GGATGT-TGAAACTTG
gi|20 : acttaGCACGGG-CCGGT-GGAAG-GCTAAATT-GG-CCTTTGTCTTACATGATACAA-TTTTGTACC-TCG-AAA
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGata
gi|3 : GTTAATCAGTA--AGACGGGAATGA-G--G-TTTTCTTAA-CACG-TG----------ACGTAT-------AATGAT-C------AATCCT---CA-TGC-AA-TGT-G-ATAGTT-------TGTCA-GTT--TTCG-ACATT-TCATCA-CACC--TTCCAAA--TCT-TCATGTACC-GGGT-CTTG-CAATGT--ACACGTT-TTGATTTACTA------TGAG-A-TTAG-AGC-ATTATT--G-AA-AGC-----GGGGGGGTGGGG-GTGTAGTT-GACTTCGTG--TGCAT---GTA-GCCTAAAGTAGAATA-ATGCA-T-----------------A--TT--TAATTTAATAATGATATG--AATTATTTGTA-ACC------------ACATA--A--T-GGCGCTAAATATGCA-TATTAAGA-CAT-TGGGAAGGAGGATGT-TGA
gi|4 : CCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCGTTAGTCAATAA-----AAACGGGAAAGA-GCGGCTCTACT----GACA--G----------ATGTGT-------AATATC-C------AATCAT---CACTGCCAACTGTAGGAT-ACTGTCAGGTTATCA-GGTTATCTGGACATT-TCATCA-TACTCTTCCAAAC--TATGTCATG--CCGGGGT--TTG-CT--GTTAGCACGTT-TTGATTTACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGGGGGGGGG-TGGTAGCTTGACTTAATG--T-CATGTAGTAGGCC-GAAGTA-AATATA-ATA-TTGT----AATTGGG--GAGGTTTGTAATTTAATAATGAAAT---AATTATATTTACA-CAATCCAAACTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACTGGGAAG--GGATGC-Tctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|5 : -TA--TTGACGGGA--TG-C--GTTGGAAGC-CT---TT-GA-TCTTTGTATTACAGGAT-CA---TTTGT-TC-T----GAT-TTTT--CAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGC-GCTAGGCGTTGTTTTATTG-TGTGTTGG-GG-TGGGG-----------TGG------CAC----------TCTA--AAGATAATGG--GACA-AGCAATA--TTAACCTGTTAAAAAGG--GGCG-T--TCGA----AAGGGGG-GGGAG-CAA-----CT--CTAT------TATGT-A-CGAG-------G-AAAACAGGGGGGGC-A-------TGTT--GATGGAGGGGGGAGGGGACTGAGTCTATT----GTGAT-GTGACATAGCAGGTTGTAAATAAACAG-----GTTT-A----GGTGGTGGCAA----TT-TGAT-AAATGGTGGGCACCGCCAAGTACAAtggt
gi|8 : tttgccaaatactttAAA-C-TCC--AAAT------AATGT-GACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCTTTG-AATGA--GGAAAA---GACT---TCTA-TCGGCATGATTGTGACG-AGCTAG--A-GAATAAAAAGGGTGCCTTTTAAGGGGGGGGGGGCAAAGCTTTCTAATAAAATAACGTGCAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTA-CGTTTGTATTTTTGAA----AGGGGGGGGGGC-ACCAAAAAGAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA
Alignments
lowQualScore : 1 11 1 1 222222222 111 1 222222 11 666666666666666666666666666666666 11 2222 11 11 1 11 1111 2222 1 1 1111 11 222222 1 22222 1 333333333333333 11 222 222 333333 1 11 1111 11111 2 44444 11 22222 444444444 2222 1 66666666666666666666666666666666666666666666666666666666666666666666 222 222 1 11 11 1111111 11 222 11 33333333333333333333333 111111 111 2222222 1 11 33333 11 1 444444 1 1 1 11 1 333333 1 22 111 1 6666666666666666666666 11 111 5555555555555555 11111 11 1 1 22 11 1
lowQualScore : 0 33 5 9 77 1 5 5 5 5 7 6 222222222 7 6 111 6 3 000000 6 6 44 6 99 6 5 8 8 666666666666666666666666666666666 33 0000 33 33 0 9 9 1 33 4444 1 1111 2 0 0 3333 33 888888 0 7 44 55555 0 777777777777777 99 0 333 333 222222 3 7 77 5555 00000 6 7 88888 7 0 77 1 66666 555555555 3333 5 1 88888888888888888888888888888888888888888888888888888888888888888888 111 000 1 5 77 1 33 2 3 5555555 2 33 7 0 3 222 8 11 3 0 8 88 99999999999999999999999 6 999999 111 6 6 6 6 6 1111111 6 6 6 6 2 99 1 1 7 11 11111 33 0 3 000000 0 3 5 5 33 0 2 111111 0 7 8 33 2 777 2 3 2 0 3 3 0000000000000000000000 33 3 666 2222222222222222 88888 2 2 33 0 2 0 33 3 33 0 7
lowQualScore : . .. . . .. . . . . . . . ......... . . ... . . ...... . . .. . .. . . . . ................................. .. .... .. .. . . . . .. .... . .... . . . .... .. ...... . . .. ..... . ............... .. . ... ... ...... . . .. .... ..... . . ..... . . .. . ..... ......... .... . . .................................................................... ... ... . . .. . .. . . ....... . .. . . . ... . .. . . . .. ....................... . ...... ... . . . . . ....... . . . . . .. . . . .. ..... .. . . ...... . . . . .. . . ...... . . . .. . ... . . . . . . ...................... .. . ... ................ ..... . . .. . . . .. . .. . .
lowQualScore : 0 88 7 0 33 4 7 7 7 7 1 7 000000000 3 7 777 7 3 888888 7 7 55 7 22 7 0 0 0 000000000000000000000000000000000 88 8888 88 22 0 8 2 0 88 8888 0 2222 5 0 0 8888 88 888888 0 0 00 00000 0 000000000000000 88 2 333 333 777777 3 3 00 0000 77777 7 3 77777 3 7 00 0 00000 555555555 5555 5 0 00000000000000000000000000000000000000000000000000000000000000000000 000 000 0 5 55 0 88 5 2 8888888 5 88 3 8 2 000 0 00 8 8 0 88 11111111111111111111111 7 222222 777 7 7 7 7 7 7777777 7 7 7 7 0 22 0 0 3 22 55555 88 0 2 555555 0 2 5 5 88 0 5 555555 0 0 8 88 5 555 5 2 5 0 2 2 5555555555555555555555 88 2 222 2222222222222222 55555 5 5 22 0 5 0 88 2 88 0 3
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
Reference ( family-2282 ) : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAATT-GA-TCTTGTTCTTACAGAATACAA-TTTTGTAC--TCATAAAT-ACTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GGGTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCTA--AA-----TGG--GACA--GC-AATATAAAA-TTTAAAAAAGATGGGCT-TCTTTGA----AAGGGGGAGGGGGGC-AAACTCCTTAATATTACAGAAAAG-TAACAGG-----AAGCAAAAAAAGGGGGAGCG-------CTTCTGAATGGGAGGTGG
gi|1 : AAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGA-GGCCA--TGCGGT-GTT-ATCAGTTTAGGACGGGAATGATG--CTTTTTCTTAA-GACACTG----------ATGTAT-------AATGATGC------AATTCTTCATA-TGC-AA-TGTAG-ATA-CT-------TGTCACGTTTATCCG-ACATT-TCATCACCACCCTT-CCAAATTTCTGT-ATGTACCGGGGTACTTGAT---GT--ACACGTTGTTGATTTACTA------TGAG-ATTTTGAAGCAATTATT--G-AAGAGC-----AGGGTTGTGGGGCTGGTAGTTGACCTTCGTGGATGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-TTTAGAATAAT---GA--TT--TAATTTAATAATGATATGCTAATTATTTGTA-A-C------------ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--TTGGAAG--GGATGTGTG-AACTTGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|10 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatACGTGGCCGGT-GGAATCGCTAA--T-GAATTTTTGTCTTACAGTATACAA-TTTTGTA-C-TCGAAAATAATTT--CAAAT-ACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGC-G-T--GG-ACTGTTAT--TG-AAT-CGGG-GG-TGGGGG----------GGG-Gg
gi|12 : GTTAATCAAT---AAGCGGGAATGA-G--GTTTTTCTTAA-GACA-TGCGGTCTACTGACATGCTGTTTCAAATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTT-CCAAA--TATGTCATGTACCGGGGT-TTgggggggggggggggggggggggggggggtgggg
gi|13 : gtTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGC-G-T-AGG-ACTGTTTT--TG-AATGGGGGAGG-TGGGGA----------TCG-GCAATC-C----------TCTAATAA---AATAGTTGACACAGC-AA-ATACAAATTCTCGATAGA--GTATGT--TGGATAGGAAGGGGG-GGGGGG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGGT-GGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA----------AA--ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCGG-T-CGG-ACTGTTTT--TGAAATGTggg
gi|17 : t-------AATGAT-CTACAGTAATTCT---CA-TAT-AG-TGCAG-ATG-GT-------GGCCA-GTTTGTCTG-AAACT-TTATAA-CA-CCTTTTCAAA--TATATCAAGTA
gi|19 : G-CCGGT-GGAA-CGCTAAATT-AG-TCTTTG-CTTACAGGATA-AA-TTTTGTACC-TCGAAAAT-ATT-------T-ACA--TATAAGT
gi|2 : cagCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAATT-GA-TCTTTGTCTTACAGGATACAA-TTTTG-ACC-TCG-AAAT-ATTA--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGGG-ACTGTTTT--TG-AATGT----GG-TGGGGG----------TGG-GCAAACAA----------TCTA--GA---AATGG--GACA-AGCAAAAATAAAAATTTAAAAAAGA--GGCT-T--TGAA----AAGGGGC-GAGGGGCAAAAT-CCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGA-GGGGGA---GACT---TCTA-T----GTGAT-G-GACT-AGCAAGTTG-AAATAAAAAAGGCGTGCTTGAAGGGGGGGGGGGCAACG---TTCTAATAAAATAATGTGCAACA-AAAGGACAAAAAGGCAC-----ATGACCTACT-------CTTTTGAAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCAC-TTTTAAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTGATTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAAGGACA-TG----------A-G-AT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAT-A-A-CT-------TGTCA-GTTTATCCG-ACATTATCATCA-CACCCTTCCCAAA--TCTGTCATG-ACCGAGGT-CTTG-C---AT--ACACGTT-TTGA-TTACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGGGGTGAGG-TGGTAG-TGAACTTCGTGT-TGCAT---GTAGGCCTAAA-TA-AATATATATATTT-T----AATAATGCATA--TT--TAA-TTAATAATGATATG--AATTTTTTGTA-A-C------------ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--TGGGA----GGATGT-TGAAACTTG
gi|20 : acttaGCACGGG-CCGGT-GGAAG-GCTAAATT-GG-CCTTTGTCTTACATGATACAA-TTTTGTACC-TCG-AAA
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGata
gi|3 : GTTAATCAGTA--AGACGGGAATGA-G--G-TTTTCTTAA-CACG-TG----------ACGTAT-------AATGAT-C------AATCCT---CA-TGC-AA-TGT-G-ATAGTT-------TGTCA-GTT--TTCG-ACATT-TCATCA-CACC--TTCCAAA--TCT-TCATGTACC-GGGT-CTTG-CAATGT--ACACGTT-TTGATTTACTA------TGAG-A-TTAG-AGC-ATTATT--G-AA-AGC-----GGGGGGGTGGGG-GTGTAGTT-GACTTCGTG--TGCAT---GTA-GCCTAAAGTAGAATA-ATGCA-T-----------------A--TT--TAATTTAATAATGATATG--AATTATTTGTA-ACC------------ACATA--A--T-GGCGCTAAATATGCA-TATTAAGA-CAT-TGGGAAGGAGGATGT-TGA
gi|4 : CCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCGTTAGTCAATAA-----AAACGGGAAAGA-GCGGCTCTACT----GACA--G----------ATGTGT-------AATATC-C------AATCAT---CACTGCCAACTGTAGGATA-CTGTCAGGTTATCA-GGTTATCTGGACATT-TCATCA-TACTCTTCCAAAC--TATGTCATG--CCGGGGT--TTG-CT--GTTAGCACGTT-TTGATTTACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGGGGGGGGG-TGGTAGCTTGACTTAATG--T-CATGTAGTAGGCC-GAAGTA-AATATA-ATA-TTGT----AATTGGG--GAGGTTTGTAATTTAATAATGAAAT---AATTATATTTACA-CAATCCAAACTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACTGGGAAG--GGATGC-Tctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|5 : -TA--TTGACGGGA--TG-C--GTTGGAAGC-CT---TT-GA-TCTTTGTATTACAGGAT-CA---TTTGT-TC-T----GAT-TTTT--CAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGC-GCT-AGGCGTTGTTTTATTG-TGTGTTGG-GG-TGGGG-----------TGG------CAC----------TCTA--AAGATAATGG--GACA-AGC-AATATTAACCTGTTAAAAAGG--GGCG-T--TCGA----AA-GGGG-GGGGAGC-AA----CT--CTAT------TATG-T-AC--G-----AGG-AAAACAGGGGGGGC-A-------TGTT--GATGGAGGGGGGAGGGGACTGAGTCTATT----GTGAT-GTGACATAGCAGGTTGTAAATAAACAG-----GTTT-A----GGTGGTGGCAA------TTTGAT-AAATGGTGGGCACCGCCAAGTACAAtggt
gi|8 : tttgccaaatacttt-AAAC-TCC--AAAT------AATG-TGACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCTTTG-AATGA--GGAAAA---GACT---TCTA-TCGGCATGATTGTGACG-AGCTAG--A-GAATAAAAAGGGTGCCTTTTAAGGGGGGGGGGGCAA-AGCTTTCTAATAAAATAACGTGCAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTA-CGTTTGTATTTTTGAA----AGGGGGGGGGGC-ACCAAAAAGAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA
Alignments
lowQualScore : 1 11 1 1 222222222 111 1 222222 11 666666666666666666666666666666666 11 2222 11 11 1 11 1111 2222 1 1 1111 11 222222 1 22222 1 333333333333333 11 222 222 333333 1 11 1111 11111 2 44444 11 22222 444444444 2222 1 66666666666666666666666666666666666666666666666666666666666666666666 222 222 1 11 11 1111111 11 222 11 33333333333333333333333 111111 111 2222222 1 11 33333 11 1 444444 1 1 1 11 1 333333 1 22 111 1 6666666666666666666666 11 111 5555555555555555 11111 11 1 1 22 11 1
lowQualScore : 0 33 5 9 77 1 5 5 5 5 7 6 222222222 7 6 111 6 3 000000 6 6 44 6 99 6 5 8 8 666666666666666666666666666666666 33 0000 33 33 0 9 9 1 33 4444 1 1111 2 0 0 3333 33 888888 0 7 44 55555 0 777777777777777 99 0 333 333 222222 3 7 77 5555 00000 6 7 88888 7 0 77 1 66666 555555555 3333 5 1 88888888888888888888888888888888888888888888888888888888888888888888 111 000 1 5 77 1 33 2 3 5555555 2 33 7 0 3 222 8 11 3 0 8 88 99999999999999999999999 6 999999 111 6 6 6 6 6 1111111 6 6 6 6 2 99 1 1 7 11 11111 33 0 3 000000 0 3 5 5 33 0 2 111111 0 7 8 33 2 777 2 3 2 0 3 3 0000000000000000000000 33 3 666 2222222222222222 88888 2 2 33 0 2 0 33 3 33 0 7
lowQualScore : . .. . . .. . . . . . . . ......... . . ... . . ...... . . .. . .. . . . . ................................. .. .... .. .. . . . . .. .... . .... . . . .... .. ...... . . .. ..... . ............... .. . ... ... ...... . . .. .... ..... . . ..... . . .. . ..... ......... .... . . .................................................................... ... ... . . .. . .. . . ....... . .. . . . ... . .. . . . .. ....................... . ...... ... . . . . . ....... . . . . . .. . . . .. ..... .. . . ...... . . . . .. . . ...... . . . .. . ... . . . . . . ...................... .. . ... ................ ..... . . .. . . . .. . .. . .
lowQualScore : 0 88 7 0 33 4 7 7 7 7 1 7 000000000 3 7 777 7 3 888888 7 7 55 7 22 7 0 0 0 000000000000000000000000000000000 88 8888 88 22 0 8 2 0 88 8888 0 2222 5 0 0 8888 88 888888 0 0 00 00000 0 000000000000000 88 2 333 333 777777 3 3 00 0000 77777 7 3 77777 3 7 00 0 00000 555555555 5555 5 0 00000000000000000000000000000000000000000000000000000000000000000000 000 000 0 5 55 0 88 5 2 8888888 5 88 3 8 2 000 0 00 8 8 0 88 11111111111111111111111 7 222222 777 7 7 7 7 7 7777777 7 7 7 7 0 22 0 0 3 22 55555 88 0 2 555555 0 2 5 5 88 0 5 555555 0 0 8 88 5 555 5 2 5 0 2 2 5555555555555555555555 88 2 222 2222222222222222 55555 5 5 22 0 5 0 88 2 88 0 3
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
Reference ( family-2282 ) : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAATT-GA-TCTTGTTCTTACAGAATACAA-TTTTGTAC--TCATAAAT-ACTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GGGTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCTA--AA-----TGG--GACA--GC-AATATAAAA-TTTAAAAAAGATGGGCT-TCTTTGA----AAGGGGGAGGGGGGC-AAACTCCTTAATATTACAGAAAAG-TAACAGG-----AAGCAAAAAAAGGGGGAGCG-------CTTCTGAATGGGAGGTGG
gi|1 : AAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGA-GGCCA--TGCGGT-GTT-ATCAGTTTAGGACGGGAATGATG--CTTTTTCTTAA-GACACTG----------ATGTAT-------AATGATGC------AATTCTTCATA-TGC-AA-TGTAG-ATA-CT-------TGTCACGTTTATCCG-ACATT-TCATCACCACCCTT-CCAAATTTCTGT-ATGTACCGGGGTACTTGAT---GT--ACACGTTGTTGATTTACTA------TGAG-ATTTTGAAGCAATTATT--G-AAGAGC-----AGGGTTGTGGGGCTGGTAGTTGACCTTCGTGGATGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-TTTAGAATAAT---GA--TT--TAATTTAATAATGATATGCTAATTATTTGTA-A-C------------ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--TTGGAAG--GGATGTGTG-AACTTGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|10 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatACGTGGCCGGT-GGAATCGCTAA--T-GAATTTTTGTCTTACAGTATACAA-TTTTGTA-C-TCGAAAATAATTT--CAAAT-ACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGC-G-T--GG-ACTGTTAT--TG-AAT-CGGG-GG-TGGGGG----------GGG-Gg
gi|12 : GTTAATCAAT---AAGCGGGAATGA-G--GTTTTTCTTAA-GACA-TGCGGTCTACTGACATGCTGTTTCAAATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTT-CCAAA--TATGTCATGTACCGGGGT-TTgggggggggggggggggggggggggggggtgggg
gi|13 : gtTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGC-G-T-AGG-ACTGTTTT--TG-AATGGGGGAGG-TGGGGA----------TCG-GCAATC-C----------TCTAATAA---AATAGTTGACACAGC-AA-ATACAAATTCTCGATAGA--GTATGT--TGGATAGGAAGGGGG-GGGGGG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGGT-GGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA----------AA--ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCGG-T-CGG-ACTGTTTT--TGAAATGTggg
gi|17 : t-------AATGAT-CTACAGTAATTCT---CA-TAT-AG-TGCAG-ATG-GT-------GGCCA-GTTTGTCTG-AAACT-TTATAA-CA-CCTTTTCAAA--TATATCAAGTA
gi|19 : G-CCGGT-GGAA-CGCTAAATT-AG-TCTTTG-CTTACAGGATA-AA-TTTTGTACC-TCGAAAAT-ATT-------T-ACA--TATAAGT
gi|2 : cagCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAATT-GA-TCTTTGTCTTACAGGATACAA-TTTTG-ACC-TCG-AAAT-ATTA--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGGG-ACTGTTTT--TG-AATGT----GG-TGGGGG----------TGG-GCAAACAA----------TCTA--GA---AATGG--GACA-AGCAAAAATAAAAATTTAAAAAAGA--GGCT-T--TGAA----AAGGGGC-GAGGGGCAAAAT-CCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGA-GGGGGA---GACT---TCTA-T----GTGAT-G-GACT-AGCAAGTTG-AAATAAAAAAGGCGTGCTTGAAGGGGGGGGGGGCAACG---TTCTAATAAAATAATGTGCAACA-AAAGGACAAAAAGGCAC-----ATGACCTACT-------CTTTTGAAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCAC-TTTTAAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTGATTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAAGGACA-TG----------A-G-AT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAT-A-A-CT-------TGTCA-GTTTATCCG-ACATTATCATCA-CACCCTTCCCAAA--TCTGTCATG-ACCGAGGT-CTTG-C---AT--ACACGTT-TTGA-TTACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGGGGTGAGG-TGGTAG-TGAACTTCGTGT-TGCAT---GTAGGCCTAAA-TA-AATATATATATTT-T----AATAATGCATA--TT--TAA-TTAATAATGATATG--AATTTTTTGTA-A-C------------ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--TGGGA----GGATGT-TGAAACTTG
gi|20 : acttaGCACGGG-CCGGT-GGAAG-GCTAAATT-GG-CCTTTGTCTTACATGATACAA-TTTTGTACC-TCG-AAA
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGata
gi|3 : GTTAATCAGTA--AGACGGGAATGA-G--G-TTTTCTTAA-CACG-TG----------ACGTAT-------AATGAT-C------AATCCT---CA-TGC-AA-TGT-G-ATAGTT-------TGTCA-GTT--TTCG-ACATT-TCATCA-CACC--TTCCAAA--TCT-TCATGTACC-GGGT-CTTG-CAATGT--ACACGTT-TTGATTTACTA------TGAG-A-TTAG-AGC-ATTATT--G-AA-AGC-----GGGGGGGTGGGG-GTGTAGTT-GACTTCGTG--TGCAT---GTA-GCCTAAAGTAGAATA-ATGCA-T-----------------A--TT--TAATTTAATAATGATATG--AATTATTTGTA-ACC------------ACATA--A--T-GGCGCTAAATATGCA-TATTAAGA-CAT-TGGGAAGGAGGATGT-TGA
gi|4 : CCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCGTTAGTCAATAA-----AAACGGGAAAGA-GCGGCTCTACT----GACA--G----------ATGTGT-------AATATC-C------AATCAT---CACTGCCAACTGTAGGATA-CTGTCAGGTTATCA-GGTTATCTGGACATT-TCATCA-TACTCTTCCAAAC--TATGTCATG--CCGGGGT--TTG-CT--GTTAGCACGTT-TTGATTTACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGGGGGGGGG-TGGTAGCTTGACTTAATG--T-CATGTAGTAGGCC-GAAGTA-AATATA-ATA-TTGT----AATTGGG--GAGGTTTGTAATTTAATAATGAAAT---AATTATATTTACA-CAATCCAAACTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACTGGGAAG--GGATGC-Tctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|5 : -TA--TTGACGGGA--TG-C--GTTGGAAGC-CT---TT-GA-TCTTTGTATTACAGGAT-CA---TTTGT-TC-T----GAT-TTTT--CAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGC-GCT-AGGCGTTGTTTTATTG-TGTGTTGG-GG-TGGGG-----------TGG------CAC----------TCTA--AAGATAATGG--GACA-AGC-AATATTAACCTGTTAAAAAGG--GGCG-T--TCGA----AA-GGGG-GGGGAGC-AA----CT--CTAT------TATG-T-AC--G-----AGG-AAAACAGGGGGGGC-A-------TGTT--GATGGAGGGGGGAGGGGACTGAGTCTATT----GTGAT-GTGACATAGCAGGTTGTAAATAAACAG-----GTTT-A----GGTGGTGGCAA------TTTGAT-AAATGGTGGGCACCGCCAAGTACAAtggt
gi|8 : tttgccaaatacttt-AAAC-TCC--AAAT------AATG-TGACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCTTTG-AATGA--GGAAAA---GACT---TCTA-TCGGCATGATTGTGACG-AGCTAG--A-GAATAAAAAGGGTGCCTTTTAAGGGGGGGGGGGCAA-AGCTTTCTAATAAAATAACGTGCAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTA-CGTTTGTATTTTTGAA----AGGGGGGGGGGC-ACCAAAAAGAA
blockSeqs : G AA G T TC A T A A C A A TCAAAT T A AAT T C AGCCTA G C GG C AT A G A . GTGGGCAAACAA AT GATA TT CA A A A T . GT G TAGG G . A ATC . . T A AA CCAGA . GGGAGGGGCTTTG AG GGG GAG TCGGC T T AT TTGT GGTGC T A AGCT A GC T CAGTG CGTTTGTA . . C . CCC C . . T . C T ACCG C CT A A A . CG T G T CGGTCTACTGACATGCTGTTTCA . TACAGT . C C C G G GTCAGGT . G A . T . A G T T CAAT TA . T TATATA A T A A CC A G GGGGGG . T G T G GTA G T G G T T TTTTAATAATGCATA TG T G CACAATCCAAACTGA AGC G C AA G G . AC A GA . A
blockSeqs : . . . T AC A . . . . A . ACAAAT T . . . G AC . . A . . . G . . ATCGGCAATCC . A . A . T A A . T G . G . . ACT . . . G AA . . GCTTT A . . TT . T G A . . . . . C A . C T ACCG C . A G . . . T . T ACGTAT . . . . . . . . . . . . . C . A A T C CT . . T T . T . . . . G G . C T . G . G T G . T T TTGTAATTGGGGAGG . T G ACC A G C A . G . T A . . A
blockSeqs : . . . . AC A . . . . . . TCAA T . . . . TA . . C . . . T . . TGGCAC . A . A . . C T . T C . . . . . . . . . . . . ATGTT . . C . . C . G . . . C . T ATGTGT . . . . . . . . . . . . . T . C G T C C . . . . . . . . . . . . . . . . . . . . . . . . TA . . . AC A . . . . . . . . . .
blockSeqs : . . GC A . . . . . . AA . . . . . TA . . A . . . . . . . . . . . . . AGAT . . . . . . . . . . . . . C . C G . .
blockSeqs : . . C . . . . . . . T . . . . . A . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . G . . . . . .
blockSeqCons : CAAAT**** TA**** *** T* *** ** C*
originalCons : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTT--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
finalCons : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAAT-ATTCAAAT----ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCATTA----GGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACAT-G----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGTC-TTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA
Alignments
lowQualScore : 1 11 1 1 2222222222222 111 1 222222 11 666666666666666666666666666666666 11 2222 11 11 1 11 1111 2222 1 1 1111 11 222222 1 22222 1 333333333333333 11 222 222 333333 1 11 1111 11111 2 44444 11 22222 444444444 2222 1 66666666666666666666666666666666666666666666666666666666666666666666 222 222 1 11 11 1111111 11 222 11 33333333333333333333333 111111 111 2222222 1 11 33333 11 1 444444 1 1 1 11 1 333333 1 22 111 1 6666666666666666666666 11 111 5555555555555555 11111 11 1 1 22 11 1
lowQualScore : 0 33 5 9 77 1 5 5 5 777 7 9999999999999 7 6 111 6 3 000000 6 6 44 6 99 6 5 8 8 666666666666666666666666666666666 33 0000 33 33 0 9 9 1 33 4444 1 1111 2 0 0 3333 33 888888 0 7 44 55555 0 777777777777777 99 0 333 333 222222 3 7 77 5555 00000 6 7 88888 7 0 77 1 66666 555555555 3333 5 1 88888888888888888888888888888888888888888888888888888888888888888888 111 000 1 5 77 1 33 2 3 5555555 2 33 7 0 3 222 8 11 3 0 8 88 99999999999999999999999 6 999999 111 6 6 6 6 6 1111111 6 6 6 6 2 99 1 1 7 11 11111 33 0 3 000000 0 3 5 5 33 0 2 111111 0 7 8 33 2 777 2 3 2 0 3 3 0000000000000000000000 33 3 666 2222222222222222 88888 2 2 33 0 2 0 33 3 33 0 7
lowQualScore : . .. . . .. . . . . ... . ............. . . ... . . ...... . . .. . .. . . . . ................................. .. .... .. .. . . . . .. .... . .... . . . .... .. ...... . . .. ..... . ............... .. . ... ... ...... . . .. .... ..... . . ..... . . .. . ..... ......... .... . . .................................................................... ... ... . . .. . .. . . ....... . .. . . . ... . .. . . . .. ....................... . ...... ... . . . . . ....... . . . . . .. . . . .. ..... .. . . ...... . . . . .. . . ...... . . . .. . ... . . . . . . ...................... .. . ... ................ ..... . . .. . . . .. . .. . .
lowQualScore : 0 88 7 0 33 4 7 7 7 111 1 5555555555555 3 7 777 7 3 888888 7 7 55 7 22 7 0 0 0 000000000000000000000000000000000 88 8888 88 22 0 8 2 0 88 8888 0 2222 5 0 0 8888 88 888888 0 0 00 00000 0 000000000000000 88 2 333 333 777777 3 3 00 0000 77777 7 3 77777 3 7 00 0 00000 555555555 5555 5 0 00000000000000000000000000000000000000000000000000000000000000000000 000 000 0 5 55 0 88 5 2 8888888 5 88 3 8 2 000 0 00 8 8 0 88 11111111111111111111111 7 222222 777 7 7 7 7 7 7777777 7 7 7 7 0 22 0 0 3 22 55555 88 0 2 555555 0 2 5 5 88 0 5 555555 0 0 8 88 5 555 5 2 5 0 2 2 5555555555555555555555 88 2 222 2222222222222222 55555 5 5 22 0 5 0 88 2 88 0 3
consensus : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAATA--TT---CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
Reference ( family-2282 ) : NNNNNCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAANCGCTAAATT-GG-TCTTTGTCTTACAGGATACAA-TTTTGTACC-TCG-AAATA--TT---CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GG-TGGGGG----------TGG-GCGANCAC----------TCTA--AA---AATGG--GACA-AGC-AATATAAAAATTTNAAAAAGA--GGCT-T--TNGA----AAGGGGG-GGGGGGC-AAAC-CCT--ATAT------AATG-TAACAAG-----AAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGAGGGGGGA---GACT---TCTA-T----GTGAT-GTGACG-AGCAAGTTG-AAATAAAAAGGGCGCGTTT-AAGGGGGGGGGGGCAA-G---TTCTAATAAAATAACGTGCAACG-CAAGNACAAAAAGGCACCAGTGATGACCTACCGTTTGTACTTTTGAAGAAGGGGGGGGGGGGCAANCAAAAAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAGGTTTCTGCCCCCCCCCTNCACTTTTTAAAAGTCGGGGGCGGGGGNACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTTAGTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAA-GACA-TG----------ACGTAT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTTCCCAAA--TNTGTCATGTACCGGGGT-CTTG-C---GT--ACACGTT-TTGATTTACTAT-----TGAG-ATTTAGAAGCAATTATT--G-AAGAGC-----GGGGGGGTGGGG-TGGTAGTTGGACTTCGTG--TGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-T----AATAATG--GA--TT--TAATTTAATAATGATATG--AATTATTTGTA-A-C------------ACAAA--A--TGGGCGCT-AATATGCA-TATTAAGA-CA--TGGGAAG--GGATGT-TGAAACTTG
gi|1 : CACTCTGTA-TA--TTGACG-CACGTG-CCGGGTGGAACAGCTAAATT-GA-TCTTGTTCTTACAGAATACAA-TTTTGTAC--TCATAAATA--CTTTACAAATTACATGTCTAAGTGTAC---AATGTG---CTCA-G-TCAT----T-GGC-G-T-GGG-ACTGTTTT--TG-AATGTGGG-GGGTGGGGGGGGGGGGGGGTGGAGCGGCCACGAAGGCAACTTCTA--AA-----TGG--GACA--GC-AATATAAAA-TTTAAAAAAGATGGGCT-TCTTTGA----AAGGGGGAGGGGGGC-AAACTCCTTAATATTACAGAAAAG-TAACAGG-----AAGCAAAAAAAGGGGGAGCG-------CTTCTGAATGGGAGGTGG
gi|1 : AAAATAAGTTTCTGCCCCCC---TGCACTTTTTAAAAGTCGGGGGCGGGGGAACCCCCATCACCC--GCTTCCTACACCGTTGA-GGCCA--TGCGGT-GTT-ATCAGTTTAGGACGGGAATGATG--CTTTTTCTTAA-GACACTG----------ATGTAT-------AATGATGC------AATTCTTCATA-TGC-AA-TGTAG-ATA-CT-------TGTCACGTTTATCCG-ACATT-TCATCACCACCCTT-CCAAATTTCTGT-ATGTACCGGGGTACTTGAT---GT--ACACGTTGTTGATTTACTA------TGAG-ATTTTGAAGCAATTATT--G-AAGAGC-----AGGGTTGTGGGGCTGGTAGTTGACCTTCGTGGATGCAT---GTAGGCCTAAAGTA-AATATATATA-TT-TTTAGAATAAT---GA--TT--TAATTTAATAATGATATGCTAATTATTTGTA-A-C------------ACAAAAGA--TGGGCGTT-AATATGCA-TATTAAGAGCA--TTGGAAG--GGATGTGTG-AACTTGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgataaaataagtttctgcccccctgcactttttaaaagtcgggggcgggggaacccccatcacccgcttcctacaccgttgaggccatgcggtgttatcagtttaggacgggaatgatgctttttcttaagacactgatgtataatgatgcaattcttcatatgcaatgtagatacttgtcacgtttatccgacatttcatcaccacccttccaaatttctgtatgtaccggggtacttgatgtacacgttgttgatttactatgagattttgaagcaattattgaagagcagggttgtggggctggtagttgaccttcgtggatgcatgtaggcctaaagtaaatatatatatttttagaataatgatttaatttaataatgatatgctaattatttgtaacacaaaagatgggcgttaatatgcatattaagagcattggaagggatgtgtgaacttgg
gi|10 : cactctgtatattgacgcacgtgccgggtggaacagctaaattgatcttgttcttacagaatacaattttgtactcataaatactttacaaattacatgtctaagtgtacaatgtgctcagtcattggcgtgggactgtttttgaatgtggggggtgggggggggggggggtggagcggccacgaaggcaacttctaaatgggacagcaatataaaatttaaaaaagatgggcttctttgaaagggggaggggggcaaactccttaatattacagaaaagtaacaggaagcaaaaaaagggggagcgcttctgaatgggaggtggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaacatggacacttctgtattctagactagttaatgcttataaggcttgaaaataatttgatACGTGGCCGGT-GGAATCGCTAA--T-GAATTTTTGTCTTACAGTATACAA-TTTTGTA-C-TCGAAAATAATTT---CAAAT-ACATG-ATAAGTGTACCAAAATGTG---CTCA-GCTCAT----ACAGC-G-T--GG-ACTGTTAT--TG-AAT-CGGG-GG-TGGGGG----------GGG-Gg
gi|12 : GTTAATCAAT---AAGCGGGAATGA-G--GTTTTTCTTAA-GACA-TGCGGTCTACTGACATGCTGTTTCAAATGAT-C------AATTCT---CA-TGC-AA-TGTAG-ATA-CT-------TGTCA-GTTTATCCG-ACATT-TCATCA-CACCCTT-CCAAA--TATGTCATGTACCGGGGT-TTgggggggggggggggggggggggggggggtgggg
gi|13 : gtTGTACC-AAACATAAATTCCATG-CCATAGCCTAGGC-G-T-AGG-ACTGTTTT--TG-AATGGGGGAGG-TGGGGA----------TCG-GCAATC-C----------TCTAATAA---AATAGTTGACACAGC-AA-ATACAAATTCTCGATAGA--GTATGT--TGGATAGGAAGGGGG-GGGGGG
gi|14 : CACTCTGTAGTAAATTGACGGCACGGG-ACGGT-GGAAACGCTAAATTTGG-TCTTTGTCTTACATGATATAAACTTTGTACCCTCG-AAA-----------AA--ACTTG----AGTGTACC-AAATGTG---CCGA-G-TCA-----TAGGCGG-T-CGG-ACTGTTTT--TGAAATGTggg
gi|17 : t-------AATGAT-CTACAGTAATTCT---CA-TAT-AG-TGCAG-ATG-GT-------GGCCA-GTTTGTCTG-AAACT-TTATAA-CA-CCTTTTCAAA--TATATCAAGTA
gi|19 : G-CCGGT-GGAA-CGCTAAATT-AG-TCTTTG-CTTACAGGATA-AA-TTTTGTACC-TCGAAAATA--TT-------T-ACA--TATAAGT
gi|2 : cagCACTCTGTA-TA--TTGACGGCACGTG-CCGGTTGGAAACGCTAAATT-GA-TCTTTGTCTTACAGGATACAA-TTTTG-ACC-TCG-AAATA--TTA--CAAAT-ACATGTATAAGTGTACC-AAATGTG---CTCA-G-TCAT----TAGGC-G-TGGGG-ACTGTTTT--TG-AATGT----GG-TGGGGG----------TGG-GCAAACAA----------TCTA--GA---AATGG--GACA-AGCAAAAATAAAAATTTAAAAAAGA--GGCT-T--TGAA----AAGGGGC-GAGGGGCAAAAT-CCT--ATAT------AATGTTAACAAG-----GAG-AAAAAAAGGGGGGG-G-------CTTT--AATGGA-GGGGGA---GACT---TCTA-T----GTGAT-G-GACT-AGCAAGTTG-AAATAAAAAAGGCGTGCTTGAAGGGGGGGGGGGCAACG---TTCTAATAAAATAATGTGCAACA-AAAGGACAAAAAGGCAC-----ATGACCTACT-------CTTTTGAAGAAGGGGGGGGGGGGCAAGCAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATAG---TCTGCCCCCCCCCTCCAC-TTTTAAAAGT--GGGGCGGGGATACCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGCGTGATTTAATCAGT---AGACGGGAATGA-G--GTTTTTCTTAAGGACA-TG----------A-G-AT-------AATGAT-C------AATTCT---CA-TGC-AA-TGTAT-A-A-CT-------TGTCA-GTTTATCCG-ACATTATCATCA-CACCCTTCCCAAA--TCTGTCATG-ACCGAGGT-CTTG-C---AT--ACACGTT-TTGA-TTACTAT-----TGAG-ATTTAGAAGCAATTATT--GAAAGAGC------GGGGGGTGAGG-TGGTAG-TGAACTTCGTGT-TGCAT---GTAGGCCTAAA-TA-AATATATATATTT-T----AATAATGCATA--TT--TAA-TTAATAATGATATG--AATTTTTTGTA-A-C------------ACAAA--A--TGGG-GCT-AATATGCA-TACTAAGA-CA--TGGGA----GGATGT-TGAAACTTG
gi|20 : acttaGCACGGG-CCGGT-GGAAG-GCTAAATT-GG-CCTTTGTCTTACATGATACAA-TTTTGTACC-TCG-AAA
gi|21 : CCCC--TCACCCCGGCTTCCTA-ACCG--GACGCCCA--TGata
gi|3 : GTTAATCAGTA--AGACGGGAATGA-G--G-TTTTCTTAA-CACG-TG----------ACGTAT-------AATGAT-C------AATCCT---CA-TGC-AA-TGT-G-ATAGTT-------TGTCA-GTT--TTCG-ACATT-TCATCA-CACC--TTCCAAA--TCT-TCATGTACC-GGGT-CTTG-CAATGT--ACACGTT-TTGATTTACTA------TGAG-A-TTAG-AGC-ATTATT--G-AA-AGC-----GGGGGGGTGGGG-GTGTAGTT-GACTTCGTG--TGCAT---GTA-GCCTAAAGTAGAATA-ATGCA-T-----------------A--TT--TAATTTAATAATGATATG--AATTATTTGTA-ACC------------ACATA--A--T-GGCGCTAAATATGCA-TATTAAGA-CAT-TGGGAAGGAGGATGT-TGA
gi|4 : CCCC--CCCCTCCGGCT-CCTA---------CGCCCACTTGCGTTAGTCAATAA-----AAACGGGAAAGA-GCGGCTCTACT----GACA--G----------ATGTGT-------AATATC-C------AATCAT---CACTGCCAACTGTAGGATA-CTGTCAGGTTATCA-GGTTATCTGGACATT-TCATCA-TACTCTTCCAAAC--TATGTCATG--CCGGGGT--TTG-CT--GTTAGCACGTT-TTGATTTACTATATATATGGGAATTTAG-CGC-ATTATTCCG-AAGAGCGGGGGGGGGGGGGGGGG-TGGTAGCTTGACTTAATG--T-CATGTAGTAGGCC-GAAGTA-AATATA-ATA-TTGT----AATTGGG--GAGGTTTGTAATTTAATAATGAAAT---AATTATATTTACA-CAATCCAAACTGAATAAA--AGCTGGGCGCT--ATACGCAGTATTAA-A-CAACTGGGAAG--GGATGC-Tctgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctgggccgaaggatc
gi|5 : -TA--TTGACGGGA--TG-C--GTTGGAAGC-CT---TT-GA-TCTTTGTATTACAGGAT-CA---TTTGT----TCT-GATTT--TT---CAA----TATGTATAGTTTTACC-AA-TGTG---TTCA-GGTCAT-----AGGC-GCT-AGGCGTTGTTTTATTG-TGTGTTGG-GG-TGGGG-----------TGG------CAC----------TCTA--AAGATAATGG--GACA-AGC-AATATTAACCTGTTAAAAAGG--GGCG-T--TCGA----AA-GGGG-GGGGAGC-AA----CT--CTAT------TATG-T-AC--G-----AGG-AAAACAGGGGGGGC-A-------TGTT--GATGGAGGGGGGAGGGGACTGAGTCTATT----GTGAT-GTGACATAGCAGGTTGTAAATAAACAG-----GTTT-A----GGTGGTGGCAA------TTTGAT-AAATGGTGGGCACCGCCAAGTACAAtggt
gi|8 : tttgccaaatacttt-AAAC-TCC--AAAT------AATG-TGACAAGCCAGAAAA-AAAAAAAGGGGGGG-GGGAGGGGCTTTG-AATGA--GGAAAA---GACT---TCTA-TCGGCATGATTGTGACG-AGCTAG--A-GAATAAAAAGGGTGCCTTTTAAGGGGGGGGGGGCAA-AGCTTTCTAATAAAATAACGTGCAAGC-CAAGACCAAAAAGGCACCAGTGATGACCTA-CGTTTGTATTTTTGAA----AGGGGGGGGGGC-ACCAAAAAGAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCCCCCCCCCCCCCCCCCCCGGGGAACTTTGTATATAGATCCCTATTACATTTTGTCATTGAGCACTTAATAACTATTGACTTTATTCTATAAAAATATAAACAGTTTTATGCAAAAATATAAGCCTTTATCAGATATAATAGCCATAGATCACAACGTAACTTTGAAAATGCTGAAGCCTCAACCTTTTGATTGGGTATACGATATTCGAATAAGCTATTATCAGTAAGAAAGCAAGCGATTAAAGCTAAATGATCTAAAATAAATTCTAGCGTCTTTGAGTTGTCATTAATACAATACAGATTCTACTGAAATATATTAACCAATGATGACGCGCCGGCGACGCCGTCGCCCGAATACA
Unaligned ( gi|7 ): ACCCAAACTTATGACTAATTATATAAATATAAACAAAGGGCATGCTATGTATCTTTACTAAATAGAATATCCTAAAGATAAAAAGTATCATTAGTTTGTTAACTATGAATAATGATGAGCTTCAAAGGTTTATAGGGAACGATATTGTCACAATTCCTTTTTTTTTTTTTTGGTTAAAGAAACAAGCGATAGAGCTAAATGTTACGTAAATCAAGCTCATTTGCGATTTCATAACCAACGCGAAGTTTTATTGAAAAGCATTGACCACGACAGACGCGCAGATGCGTTGTAT
Unaligned ( gi|9 ): CTTTACAAATATATAGCCATGCACTAGTAATGTGATGCTGAGCTTCGAACTTTTGATTGGGCTCTGAATTCCGAATAAGGTTTGTCTTGTAAGAAAAGCAAGCGATAAAGCTAAAAGGTTTAGATTTACAAAAAAAAACTATCTTATTTGAGTGTTTATTTACCAATAACAAAATTATACTGATAAATAGACGCCGGACGCGCCCAATAACA
Unaligned ( gi|11 ): TGAAAAATGCTGATTCTCAAACTTTTGATTGAGTTCAATATTCGCGTAAAATCTTTCCGTACAATAAACAAGCGATAAAGCTAAATGGCTACGAATGTCCATAGACATGAGTGCTCATTAACACGGCAAAATTCTACTGAAAAACTTTGACCACAATTGACGCGCGGGCGCGCCGAAT
Unaligned ( gi|15 ): CTAGTAATGCATTATAGCTTGAAAAATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): CCCCCCCCCCCCCCCCCCGGGGCTCCGACATTTTAAGAGCTATATTGTTTGTAATTGAAATTAAAACAACACAATTTTATTTTTTAAAAAAACGACGTTGTATCAAA
Unaligned ( gi|18 ): CCCCCCCCCCCCCCCCCCCCCCGATCGCGCATGTATATATACATGTTTATTATGATAGCATTTTCTGATTATTGATTTTA