lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777777777 1 22222222 44444444444444444444444444444444 222222222 11 111 2222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 22222 11111 11 3333333333333 111 1111 111 222 1 2222 11 22222222 44444444444444 1111 3333333333333333333 1 3333 6666666 1 11 111111 5555 1111 3333333333 66666666666666 11 666666666666666666666666666666666666 33 1 22222 2 1 444444444 999999999999999999999999999999999999999999 33 1 22 1 9999999999999999999999999999999999999999999 11 44 11 22 222 44444444444444444444444444444444444444444444444444444444444444444444444444 11 2 111 11 33 111 2 3333333 444 1 2222222222 1 444 1 22 1 33333333 666666666666666 1111 1 11 1 1 22 222222 1 1 1 33 1 111 1 333333 1 4444444444444 1 222 1 888888888888888 1 22222 2222 4444444444 1 1111 3333 1 3 2222 33 1 111 2 44444 11 1 22 111 111 1 1 11 1 2 1 111 1111 000000000000000000 1 1 1 44444 11 444444444 333333333333333 33 33333333 1 3333333333 1 222 11 66666666 111 111 4 8888 1 1 11 11 55555 99999999 4 00000000000000000000000000000000000000000000000000000000000000000 1 4 4 222 4 11 4 6666666666666666 999999 4 4 4 7777777777 55 222222 333 44444 1 1 111 33333 333333333 2 11 8888888888 222 2 55 11 77777777 4444444 2 1 44444444444444 2 4 1 666
lowQualScore : 5555555555555555555555555 0 11111111 11111111111111111111111111111111 8 000000000 6 11 111 6 777 3333 99 6 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 99 6 55555 2 77777 33 8 5555555555555 444 3333 111 333 3 0 1111 33 11111111 88888888888888 2222 9999999999999999999 3 333 3 0 1111 3 9999999 0 77 333333 2 4444 0 7777 3 3 2222222222 3 3 99999999999999 0 8 8 3 1 3 0 11 8 3 555555555555555555555555555555555555 44 00 0 5 3 11111 0 0 777 666666666 7 111111111111111111111111111111111111111111 22 3 00 2 6666666666666666666666666666666666666666666 88 33 33 77 7 777 88888888888888888888888888888888888888888888888888888888888888888888888888 11 0 777 33 77 666 0 0 6666666 000 0 1 5555555555 66 0 555 0 2 33 2 0 55555555 111111111111111 8888 0 33 0 0 55 666666 0 0 0 66 0 111 0 111111 0 3333333333333 6 5 333 2 000000000000000 0 22222 1111 2 2 3333333333 0 3 6666 5555 0 1 2 3333 9 00 0 555 3 7 0 66666 33 3 99 777 777 0 0 00 0 7 0 2 0 0 0 666 6 7777 555555555555555555 99 0 3 8 0 3 0 3 3 0 33333 2 33 333333333 666666666666666 77 8 0 00000000 6 0 5555555555 0 777 33 8 66666666 777 777 2 3 4 4 4 0 6 5555 7 7 22 22 22222 77777777 6 0 99999999999999999999999999999999999999999999999999999999999999999 6 7 0 0 999 0 6 22 0 6 3333333333333333 222222 0 0 0 9999999999 55 6 777777 2 888 55555 5 2 999 7 99999 444444444 3 6 88 7777777777 111 55 2 0 6 55 88 4 4 00000000 2 4 4444444 3 5 2 66666666666666 3 0 5 111
lowQualScore : ......................... . ........ ................................ . ......... . .. ... . ... .... .. . . ........................................................................................................................................................................................................................................ . . .. . ..... . ..... .. . ............. ... .... ... ... . . .... .. ........ .............. .... ................... . ... . . .... . ....... . .. ...... . .... . .... . . .......... . . .............. . . . . . . . .. . . .................................... .. .. . . . ..... . . ... ......... . .......................................... .. . .. . ........................................... .. .. .. .. . ... .......................................................................... .. . ... .. .. ... . . ....... ... . . .......... .. . ... . . .. . . ........ ............... .... . .. . . .. ...... . . . .. . ... . ...... . ............. . . ... . ............... . ..... .... . . .......... . . .... .... . . . .... . .. . ... . . . ..... .. . .. ... ... . . .. . . . . . . . ... . .... .................. .. . . . . . . . . . ..... . .. ......... ............... .. . . ........ . . .......... . ... .. . ........ ... ... . . . . . . . .... . . .. .. ..... ........ . . ................................................................. . . . . ... . . .. . . ................ ...... . . . .......... .. . ...... . ... ..... . . ... . ..... ......... . . .. .......... ... .. . . . .. .. . . ........ . . ....... . . . .............. . . . ...
lowQualScore : 8888888888888888888888888 0 88888888 55555555555555555555555555555555 0 222222222 7 00 777 7 555 3333 22 7 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 7 22 2 88888 5 88888 00 0 6666666666666 000 2222 000 222 2 0 2222 88 22222222 00000000000000 8888 8888888888888888888 2 888 2 0 2222 2 2222222 0 55 888888 5 0000 2 8888 2 0 0000000000 2 2 66666666666666 8 0 0 8 4 8 8 22 0 8 555555555555555555555555555555555555 88 88 8 0 2 55555 0 0 555 222222222 3 000000000000000000000000000000000000000000 77 3 00 0 0000000000000000000000000000000000000000000 33 77 88 77 3 333 22222222222222222222222222222222222222222222222222222222222222222222222222 22 0 555 88 88 222 0 2 0000000 000 0 2 5555555555 00 0 000 0 5 88 5 0 88888888 555555555555555 2222 0 88 0 0 00 888888 0 0 0 22 0 000 0 000000 0 0000000000000 7 3 333 3 666666666666666 0 00000 2222 5 5 8888888888 0 2 0000 2222 0 5 5 8888 8 88 0 555 2 8 2 22222 88 3 33 777 555 0 0 88 0 5 0 5 8 8 2 555 5 5555 888888888888888888 00 0 5 8 0 2 0 2 2 8 22222 5 88 222222222 777777777777777 22 8 8 00000000 5 0 0000000000 0 000 88 8 00000000 555 555 5 2 0 0 0 0 0 0000 0 0 00 00 00000 00000000 0 0 00000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 000 0 0 00 0 0 0000000000000000 000000 0 0 0 0000000000 00 0 555555 5 555 55555 0 0 000 3 77777 000000000 7 7 00 5555555555 000 55 5 0 0 00 55 0 0 00000000 5 0 5555555 0 5 5 55555555555555 0 0 0 000
consensus : NGCGCA-GC--GC--TGT-GGTT-----G--TC-AATAA-G--T--ATTT-AC--GTNACC------ATTAC-GA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC----TT--T-A-CTATA--CG-----AAAAGT-----------NTATAT--CATC------GTGA-CGGT----A---AT--TTTACATT----CG-TA--TCCATTTCG-TATATCA---AATA--NATC-TT--T-A-AAAT-GCG-AAA--TA-TTA-AAATG------------TA--T-G---------------GC-TTG---G-TTGGAT-TT------T---TTACCG----TAAAT----A-T-T--GCCTGT-----AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAATT-AA----TGAT--AC-AN--NA-CAAA---A--TT-T---GCAGAAN-AATA-TTA-GATTTTGATGT-TGATAATGTACATAATTAAAAATT-ATGATGTT-ATC-TAATCAG-TATGC-GGTA-TA-CGCTGAT--TCAGAGT-G--CAAGATTG-GAG--GT--AGATCAACCTTAACGTGGTGGAA-AATA-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATT-CT-GCAA-TAT-TTATTCAAANTTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAA-A--ATA-ACAATACTTAAGAAAAA-AATAAATACTT---TTC-ATC-ATANCGTNGC-TGAT--ATGTGG-GTTATTCA-TA-TCGGTTATGGG-TATTAANATT-TG-TGTGT--CACAA-C-GCT--AA---AAGTT--ACACT-TTCAA--AATG-CCTGATA-GTAAAG----GTTTTG-G--TT-ATA--T---TGAGTT---------A--ACG--------------------GT--G--TGTT-TAA-TT---AAA--GG--AATTTTAG--AAAATAGGT-----NTTTTAGAT-TTAC-TTGTAAATAATATTTTTTTGAANNGAA-TTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--A-C----GTTAACAATAA-T-TGCAA-TG--TA-TA-CCT-ATGTGT-CCACA-GTGA-CGA-TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTGAG-TC-AATG-TCATTC-AAAAT---GTGAATA-TAT--GT-ACATG-TGCACCA-TTTAANAT-TCATTT----ANANAA----------TG-TGCAAATCAAAATTTC-ATCG-TGAC-AGGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTG-TCGCTTTT--C-TT--AG-ACAA--TCT-A-CGGA---GT-CAAC-ACCGAATGT-CACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAATAA--CTAT-CTTAAAAC--CAATCGTCCAT-ANAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-ATTGCACT-CTA-ACAATTACAAAAT-TCCAGCAAAAAA--CAAA--TGTC-AAC-A-----C-GTTA-TGTCACCAGACG--TCAAAAAA-GA--GACT---AAT---TTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTCNGGNTGAANTA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGANAAAAACACNGAAAATAATNACCCACCCCAAA--CCTCCGC-A--CATGACAGTTGG-T-CGAGAANCACTACCCAATNCCAGATACAAACTTGTACTCTATNNANNAATGTGAATCTTTGNTTCAGGAAGAGAAATTATGAATACT--AGCACAAACGTAAANCTTTGNTA-TGTTATCCATANCANTGACATAACGGAAAATGAAAAGNGGACCCTAATACATTGCAGATCCTTTGAGGGACCCTAACATGTAAGATGTTTTTATGCAGT--ATATAC
Reference ( gi|2 ) : TGCGCA-GC--G---TGT-GGT------G--TC-AATAA-G--T--ATT--AC--GTAACC------ATTAC-G-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC----TT--T-A-TTATA--CG-----AAAAATT----------TTATAT-CCACT-----GGTGATCGGT----A---AT--TTTACATT----CGTTA--TCCATTTTG-TAT-TCA---AGTA--AATC-TT--G-A-AAAT-GCG-AAA--TACTTA-AAATG------------TA--T-G---------------GCATTG---AGTTGGAT-TT------T---TTACCG----TAAA-----A-T-T--GCGTGT-----AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAATT-AA----TGAT--AC-AA--CA-CAAA---A--TT-T---GCAGAAG-AAT--TTA-GAGTTTGATGTGTGATAATGTACATAATTTAAAATTTATGATGTCGATCTTAATCAG-TATGCCAGTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAG--GT--AGATCAACCTTAACGTGGTGGGACAATA-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAA-T-CT-GCAACTAT-TTATTAAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAA-AAGATACACAATACTTAAGAAA---GATAGATATTT---TTT-ATC-ATACTGTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGA-AATTAAGATT-TG-TGTG---CACAA-C-G----AA---AAGTT--ACACTGGTCAA--AATGTTCTGATT-TTAAAGCG-CGTTCTT-G--TT-ATA--T---TGAGTT---------A--ACG--------------------GT--G--TGTT-TAA-TT---AAA--GG-TAATTTTAG--AAA-TAGGT-----TTTTTAGA--ATAC-TTGTAAATAATATTTTTTTGAACAGAA-TTT---AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-ATGCGT-CCACA-GTGA-TAA-TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGGAGTTC-AATGCTCATTCAAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCA-TTTAAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAATCTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTTCGCTTT-----TT--AG-ACAA-TTCT-A-CGGA---GT-CAAC-ACCGAATGT-CACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAATAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCATCGCACT-CTA-ACAATTACAAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-A-----C-TTTA-TGTCACCAGACG--TCAAAAAATGACGAACT---AAT---TTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTT----AAAACTAAAACAACTTACTATTGTTGTGATGACAATT-AAC-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAAT-AACTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCC-GCAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAAC-AAAAAAGAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACA-AGAAAA----AACGCACCCCAAG--CCTCTGC-ATTTATGACAGTTGGAT-CGAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAACTTTGATAGGGTT--CTATAGCAATG---TA--GGAAAATAAAAAGCGGA-C-TAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGAAATG-TTTTATGGAGTTAGTATACATGTACTATT
gi|6 : GCGCA-CC--GC--TGTTGGTT-----G--TC-AATAA-G--TTAGTT--AC--GTA-CC------ATTAC-A-------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC----TT--TTA-CTATA--CG-----AAAG--------------TATAT-ACATT-----TGTGAC--GT----A----T--TTTACATT----C--TA--TCCATTTTG--ATACCA---AATA--AATC-TT--TTA-AAAT-GCG-AAA--TA--TG-AAATG------------TA--TTG---------------GC-TTGCCTGTTTGGAT-TT------T-----ACCG----TAAAT----A-TGT--GCCTGT-----AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA-T-TT-CGTAAAATTTAA----TGAT--AC-AAAACAACAAA---AATTT-T---GCAG--G-AATAATTA-GA-TTT-ATGTTGGATAATGTACATAATTAAAAATT--TGATTTC--TC-TAATCAGTTATGC
gi|5 : acgtcgGCGCA--C--GGC-TTT-GGT------G--TC-AATA--G--T--ATT--AC--GTA--C------ATTACAG-------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC----TT--T-A-TTATAGCCG-----AAAATTA----------TTAT----CATC-----TGTGA-CGGT----A---ATTGTTTACAT------GTTACGTCCATTTTG-AATATCA---A-TA--CATCTTT--T-A-AAAT-GCGAAAA--TA--TA-AATGG------------TGATT-G---------------GC-TTGCATGCTTGGAT-TT------G---GTCTCG----TAAAT----ATT-T--GCCTG-------AAT---T----AACAA--AGCTC-CA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAATG-AA----TGAT--AC-AC--AA-CAA--------T-T---GCAGAAGTAA----TA-GA-TTTG-T---TGA-AATGTCT---ATTGAAAAT---TGA-GT--ATT----TCAG-TAATCGAGT--TA--G-TGAT------AGT-AATCAAGATTG-GAG--GT--GTGTCA--CT--ACGT----------TA-AATGCATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-Ta
gi|12 : agacgtcGCGCACGCTAG---T-T-GGT------AGCTCGAATAAAG--T--ATTT-ATCAGTTACC-------TTAC-GAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCA--TT--T-A-CTATAT-CG-----ATAA-------------TTATAT--CACCAAATAGATGA-CGGT----A---AT--TTtatgaattgcttttaaacgatagttaatgaaaaaaatagaagtaatgtt
gi|1 : aacgtcCA-GC--GCACTGC-GGTTGCTTCG--TC-AATAA-GGTT--ATTTCAC--GTTACTTACTCAATTAC-GATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAGC-G-AG----TTACT-A-TTAT---CGGTTT-AAAGATTGATATATCTTCTATATGTCGCG-----GGTTAATGGTTTTGACGCAT--TCTAAATTTCTGCGATA--T---TTTCG-CATATCA---A-CACTAATC-TTTTA-ATAAATCGCG-AAAATTACTTA--AATGTGTAATCTGAGCTA--T-GAATACTCGCGTGTAGGCATTG---AA----AT-TT------TAAGTCACCGATTGTAAATTATGA-T-TAAGC-TGTTGTTAAGATCGGT----AACAA-CAGCGT-CACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAATT-TACTTCTGATTAGC-AC--CA-AAAACACA--TTATCGAGCAGAAT-AATA-TTACGATGGTGATGT-TGATAATGTACATAATTAAAAAATTATGATGTT-ATC--AATCAG-TATGC-AGTAATAACGCTGAT--TCAGAGTTG--CAAGATGG-GAG--GTGTAGATCAACCTTAATGTG-TAGAA-AATA--GGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTGGCAA-TAT-TTATTCAAAATTTG-GATTAATATTTCGTTTATAAGATGGTTTTTAAAATGAA-----ATA-ACAATACTTAAGAAAAG-AATAAA-ACTT---TTTAATCAATAC-GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GG-TATTAATATTGTG--GTGT--CAC-A-C-GTT--AA---AAGTT--ACACT-TTCAA--AATG-TCTGATA-GTAAAG----GTTTTG-G--TT-ATAATT---TGAGTT---------A--ATG--------------------GT--GTATGTTACAATTT---AAA--GG--AATTTTAGAAAAA-TAGG------TTTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAA-TTTTA-AGCAAATACA--TGTA-GTT-------TATAGTCA--A-C----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-ATGTGT--CACA-GTGA-CGA-TTTGAC-GTTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCATTC-AAAAT---GT-AATA-TAT--GT-ATAT----CACCA-TTAAATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAATTTC-ATCG-TGACGA-AAAATATTTGAGT-GA-TTCA-GTT-A-AATCTG-TCGCTTT-----TTTAAGAACAA--TCT-AGCGGA---GTGCAACAACTGAATGT-CACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-ATAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAATTGCACTCCTAGACAATTACAAAAATTCCAGGAAAAAAATCAGAATTGTCTAACAA-----C-GTTA-TGTC-CAAGACG--TCAAAAAA-GA--GACTTTAAAT---TTGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC--AGAAAA----CACCCA--CCAAG--CCTCTGC-A--TATGACAG-TGGATCCGAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AACTTTGATA-TGTT--CTATAGTAATG---TA--GGAAAAT-AAAAGCGGACC-TAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-AGATGTTTTTATGCAGT--ATATACgtgagcgtgtctatccatatctgatgatggacaataatcatcttt
gi|8 : gt------ATTAC-A-------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-ACTTAATT--T-ACTTACA--CT------AAAGTC----------ACATAT--CATT------TTGA-CGGT----C---AT--TCTACACT----C--TG--TCCATTCCG-TTA-TCG---A-CA--CGTC-TT-----------------------TTATAAATG------------T-----------------------ATTA---GGTTGAATATTCTGATAT---TTA-CG----TAAAT----A-T-T--GCATGT-----AGACAGGT-----GCGG-AAATAT-CGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|14 : cgtcgtgcaggctgttggtttaaaagagt-TGTT-TT---ATATGAATA-AAAA-C-AC----TT--T-A-CTATA--AGCCTACAAAAGTT----------ACATAT--CATT------ATGA-CGGT----A---AT--TTTACATT----C--TG--TCCACTGTGATA--TCAATGAATA--CATCTTT--T-A-AAGT-GCG-AAA--TA-TTA-ATTTG------------T--------------------------------TCGGA--TT------T---TTA-CG----TAAAT----A-T-T--GCATGTTA---AGACCGGttgaaataacttgaatgata
gi|3 : TA--AATC-TT--TTA-AAAT-GCG-AAA--TGTT---AAATG------------TA--TTG---------------GC-TTG---A-CTGGAT-TT------T---T-AC-G----TAAAT----A-T-T--GCCTGT-----AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA---TTTCTTAAAATT-AA----TGAT--ACTAA--GA-CAAA---AT-TT-T---GCAGAAT-AAT--TTT-GATTTTGATGT-TGATAATGTACATTA-TTAAAA-TGATGATGTT-ATC-TAATCAG-TATG-CGGTA-TA-CGCTGA--TTCAAAAT-G--CAAGATTG-GAGGTGT--AGATCAACCTTAACGT-GTAGAA-AAT--AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATT-TT-GCAA-TAT-TTAATAAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAA----ATA-ACAATACTTAAGAAAAAGAATAAATATTTTCATTC-ATA-ACAGTGCTGT-TGA-TAATGTGA-GTTATTCA-TATTCGAGTATGGG-TAATAAGATT-TGTTGTGTCACATAA-CTGCTCCAA---AAGTTAAACACTTATCAAATAATG--CTGATTAGTAAAGGGTTGATTTG-G--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTGT--G--TGTT-AAA-TTAAGAAA--GGATAGGTTTA---AGA-TATGTAGCCGATTTTAGAT-TTACTTTGTAAAAACTA--TTTTTGAAACGAATTTT---AACATA-ACACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATG-GTGTCACA-GTGATTAACTTTGAC-TTTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCATG----TC-AAAAAT--TTCAAAAATTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAATATCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTCATCGTTGAC-AGGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTG-TCGTTTTTTTTATT--AG-ACAA-ATCT-A-CGGA---GT-CAAC-ACCGAATGT-CACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAATAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAAT-GT-GCATGTCTTGAAAAAG--ATTTTT--C
gi|13 : GTA-GA-CGCGGAC--CCAGAAT-G--CAGG----TG-----T--AGATAAACCTTAACGTG-TGGAA--ATT-AGGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-T--TTTTGTGAGCA-T-CT----------------AAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATA-A
gi|9 : gctGTGG---AATATAGGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGTG-TGAGAA-TTCT-G-AATTACCTTATCCAAATTTTGA-ATTCATATT-CG---ATAAGATGG-TTTT----TGAAAGAAAATAGCTAAT-CTTAGGAAAAA-GATAAGTACTG---T---ATCCATAACGTACC-TGAT--ATGTTG-ATTATTCAGTA-GCG-TTATAGTTAATGAAAGTG-TG-TGT----CACAAAC-G----TTTTTAAGTT--ACACT-TTCAA--Ataactctacttatcaaaacgaatgcactattcat
gi|10 : gtTTAA--AATGTCC-GATA-GTAAAG----GTTTTG-GGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAATT---AAATAGG---ATTTTAG--AAAATAAGC-----ATTTTATA--TTAC-TTGTAAACGA-ATTTT---GAAAAAAA-CTTTTGGATATG-A-A--T-TA-GTT-------TATAGTCG--AA-----GTTA-CAATGG-TATGCAA-TG--TA-TA-CCT-ATGTGT-C-ACA-GTGA-CGA-TTTGACG-TTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCtg
gi|4 : -TTAAAG-----TTCTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------GT--T--AGTG-TAA-TT---AAA--GG--AATTTTAG--AAAATAGGT-----TTTTTAGA---TAC-TTGTAAATA-TATTTTT---AACTGAA-TTTTT-AACATA-ACAA-TGTA-GTT--------ATAGTCA----C-----TTAA--ATAT-G-TGTAA-TG--TA-TA-CCTCATGTG--CCACACGTGA-TAA-TTTGACG-TTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTGAGT-C-AATG-TCATTTCAAAAT---GTGAATACTAT--GT-ACATGATGCACCA-TTTAATA---CATTT----AGAGAA----------TG-TGCAAATCAAAATTTC-ATCG-TGAC-AGGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTGTCCGCTTTTAAC-TT--AG-ACACTTTCTAA-CGAATTTGT-CAAC-AC---ATGTACAAACGCGC-G-------------AA-TGTT-CTTGGAAGAAAATTAAC-TAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGCG-------------AAG--ATTTCT------AT----AAATATCA---CA-----G-ACAATTACAAAA--TCCAG---AATA--C-----T-TC-AAC-A-----C-GTTACTGTCA-CAGACGGTTCAAAAAA-GA--GACT---AAT---TTGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTAtttg
gi|16 : GT-A-ATG-TGCACAG-TTTAAATA-TCATTT----ACACAA----------TG-TGCAAATT----TC---ATTG-CGAC-AGAAAAT--TCAAGTTGGC-TCA-GTT-AAAATTCG-TCGGTTG-----TT--
gi|7 : attcatgccatttatGA---GT-CAAT-ATTAAATGT-CACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAATAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAAT-GT-GCATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GTTGCATT-CTA-GCAATTAGAAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-A-----C-GTTG-TGTCA-CAGACG--T-AAAAAA-GA--GACT---AAT---TTAACGTTACATTGAATATGCACTGGTAC
gi|15 : TTACAAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCATGTA-TGTCAC-AGTTC--TGAAAGA--GACCA-CT---AATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|17 : ttttcaatttgatgtgcatataataatatatatgccatctcatgtGGGGGGGGGGGGGGAGAAAAAAACACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-AGAAAAACACTA-
gi|11 : ggCCTCAAAGCCCTCCGC-AA--ATGATAGTGGGTC-CGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA-
gi|11 : cACAAATGTAAATCTTTGTT----TTATCCATATCATTGACATAACGGAAAATGAAA-GAGAA-CCT--TATAT---AGATCCTTTGAGGGACTCTAACATATAAAtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
Alignments
lowQualScore : 1 11111111 3333333 11 11 11 111111 33333333 1111111 111 2222 444444444444444444444444444444444444 111 111 33333333 111111 11 111111 1 2222 88888888888888888888888888888888888888888888888888 22222222222222 1111 1111 111 11 1111 2222 111 111 1 1111 11 4444444444444444 11 11 11 111111 1111 1111 11 22 22 22 11111111 1 111111 1111 2 2 11 111 111 1 22222 1 22 2 1 11 1 1 111 333333333333 11 111 11 22 1 111 111 11 111111 88888888888888888888888888888888888 11111 1 11 111 222222 2222 11 1 11 2222222 3333333333333333 111 11 22 11 1111 1 222 1 11111 111 1 111111 1 11 111 11 1111 3333333333 111111 1111 3333333 1 1 1 11111 111 111 111 222222 1 11 111 11 22222 1 11111111 1111 22 11 222222 111111 111 111 1 2222 1 1 2 4444 2 333 1 22 2 22 1 2222 2 2 2 1 2 1 1 1 2 333333 2 2 1 222 22 22 22 44444 11 3333 22222222 8888888888 1 22 11 333333 4444444 11 2 111111 777777777777777777 11
lowQualScore : 0 33333333 3333333 8 88 11 8 88 11 99 999999 66666666 6 6 4444444 5 66 000 5 5 5 0000 5 5 5 222222222222222222222222222222222222 5 77 777 111 6 88888888 999999 33 22 999999 1 1 3333 5 5 5 11111111111111111111111111111111111111111111111111 5 999 66666666666666 2222 2222 5 5 77 000 55 0 4444 99 6 1111 6 111 111 8888 8 8 8 8 0 8 7777 11 8 22 3333333333333333 8 11 66 88 11 8 8 0 0 1 8 8 6 11 8 3 888888 8 6 99 2222 1111 8 11 0 8 22 0 0 22 3 6 55 6 6 1 1 77 6 1 11111111 0 222222 8 1 5 1 8 0 4444 0 8 6 3 11 8 8 0 0 333 0 3 3 1 8 666 0 22222 1 0 33 0 0 33 2 2 0 4 1 5 111 3 999999999999 33 555 11 44 0 8 444 444 11 8 666666 77777777777777777777777777777777777 77777 8 6 11 8 8 444 0 88 888888 0000 8 3 0 11 777 22 3 8 8 8 11 8 0 6666666 2222222222222222 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 0 777 0 66666 777 0 111111 8 66 444 8 88 7777 1 1 5555555555 8 888888 8 8 8 8 9999 6 8 8 88 0 8 8 8888888 0 0 0 88888 444 8 8 6 000 8 999 3 1 0 8 444 8 555555 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 6 8 88 5 66666666 3 8 8 3333 00 11 333333 8 888888 444 444 0 11 1 1 3 4444 4 4 5 5 0 2222 0 4 555 5 77 4 0 77 5 3 4444 0 3 4 0 0 4 5 0 5 5 5 0 777777 0 0 5 111 77 77 6 1 99 55555 6 33 3 2 5555 3 33333333 1 6 44 6666666666 999 22 1 5 77 0 33 1 444444 0 1 1 9999999 99 1 3 888888 0 666666666666666666 7 88
lowQualScore : . ........ ....... . .. .. . .. .. .. ...... ........ . . ....... . .. ... . . . .... . . . .................................... . .. ... ... . ........ ...... .. .. ...... . . .... . . . .................................................. . ... .............. .... .... . . .. ... .. . .... .. . .... . ... ... .... . . . . . . .... .. . .. ................ . .. .. .. .. . . . . . . . . .. . . ...... . . .. .... .... . .. . . .. . . .. . . .. . . . . .. . . ........ . ...... . . . . . . .... . . . . .. . . . . ... . . . . . ... . ..... . . .. . . .. . . . . . . ... . ............ .. ... .. .. . . ... ... .. . ...... ................................... ..... . . .. . . ... . .. ...... .... . . . .. ... .. . . . . .. . . ....... ................ ... . .. . . . . .. . . .. . . . . . .... . ... . ... . ..... ... . ...... . .. ... . .. .... . . .......... . ...... . . . . .... . . . .. . . . ....... . . . ..... ... . . . ... . ... . . . . ... . ...... . . . . . . . . . . .. ... .. ..... .. . . .. . ........ . . . .... .. .. ...... . ...... ... ... . .. . . . .... . . . . . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ...... . . . ... .. .. . . .. ..... . .. . . .... . ........ . . .. .......... ... .. . . .. . .. . ...... . . . ....... .. . . ...... . .................. . ..
lowQualScore : 0 22222222 8888888 0 88 00 0 66 00 66 222222 88888888 7 7 3333333 7 77 000 7 7 7 0000 7 7 7 777777777777777777777777777777777777 7 99 999 777 7 88888888 222222 88 77 222222 0 4 0000 7 7 7 11111111111111111111111111111111111111111111111111 7 444 99999999999999 1111 1111 7 7 99 999 77 7 2222 22 7 8888 7 777 777 0000 0 0 0 0 6 0 0000 00 0 00 4444444444444444 0 88 88 88 22 0 0 8 8 0 0 0 0 22 0 2 000000 0 7 44 6666 8888 0 00 8 0 00 8 8 55 7 7 33 7 7 7 7 77 7 7 00000000 6 888888 0 0 0 0 0 8 8888 4 0 0 4 00 0 0 8 8 000 8 8 2 0 0 888 0 22222 0 0 88 0 0 00 5 8 2 0 0 5 000 2 222222222222 88 000 00 55 0 0 000 000 00 0 000000 66666666666666666666666666666666666 00000 0 0 00 0 0 000 8 88 888888 4444 0 8 8 22 000 00 6 0 0 0 00 0 8 0000000 0000000000000000 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 0 555 0 55555 555 5 444444 2 22 000 8 66 0000 0 0 0000000000 0 222222 0 0 0 0 4444 0 0 0 88 8 0 0 8888888 0 0 0 55555 000 0 0 4 000 0 666 2 0 8 0 222 0 222222 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 0 0 88 0 88888888 2 0 0 0000 66 00 000000 0 222222 000 000 8 77 0 0 3 5555 0 0 5 0 0 5555 0 0 000 5 55 0 0 55 5 0 0000 0 0 0 0 0 0 0 0 0 5 5 0 000000 0 0 5 000 55 55 7 0 00 77777 5 88 2 0 5555 2 00000000 0 7 77 0000000000 333 00 0 0 55 7 00 0 333333 7 0 0 7777777 33 0 3 000000 7 333333333333333333 3 33
consensus : NGCGCANCGC--TG--T-GGTTGC----TC-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC----TTT-AC-TAT-A--CG-----AAAANTN--T-ATATC-A-TCT-----GTGA-CGG--TAAT---TTTA---CAT-TC-T-G----TCCA------TTTCGT-ATATCA---A-ATAAATC-TTTT-A-AAAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TT-GGA-T-TT------T---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAATT-AA----TGAT--AC-AANACAA----A---ATT-TC--GCAG-AATAATATTA-GATTTTGATGT-TG-ATAATGTACATAA-TT-AAAAATTATGA-TGTT-ATC-TAATCAG-TATG-CG-GT-AT-ACGCTGA--TCCAGAG-TG--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATTCT-GCAA-TA-TTTATTNAAAATTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATG-AAA--ATA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TC-ATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACT-T-TCAA--AATG-TCTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------GT--G--TGTT-TAA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTTA-ACATA-AC-A--TGTA-GTT-------TATAGTCA--A-C-----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AG-TCA--AATG-TCA-TTC-AAAAT---GTAAATA-TAT--GTA-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGAC-AGGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTG-T-CGCTTTT--T---TTAG-AC-AA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAA--AC-CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACA--GAAAA----AACCCACCCCAAG--CCTCTGCA-T-TATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGTAAA-CTTTGATA-GTT-TCTATAGCAATG---TA--GGAAAATGAAAAGCGGA-CCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCAGCGC--TG--T-GGTTG-----TC-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC----TTT-AC-TAT-A--CG-----AAAAGTN--T-ATATC-A-TC------GTGA-CGG--TAAT---TTTA---CAT-TCGT-A----TCCA------TTTCGT-ATATCA---A-ATANATC-TTT--A-AAAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TT-GGA-T-TT------T---TTACCG----TAAAT----A-T-T--GCC--TGT--AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAATT-AA----TGAT--AC-ANNACAA----A---ATT-T---GCAG-AANAATATTA-GATTTTGATGT-TG-ATAATGTACATAA-TT-AAAAATTATGA-TGTT-ATC-TAATCAG-TATG-CG-GT-AT-ACGCTGA--TTCAGAG-TG--CAAGATTG-GAG--GTAGATCAACCTTAACGTGGTGGAA-AATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATTCT-GCAA-TA-TTTATTCAAANTTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA--ATA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TC-ATANC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-TCGGTTATGGGTATTAANATTTG-T-GTGTCAC--AAC-G-CT--AAAAGTT--ACACT-T-TCAA--AATG-CCTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------GT--G--TGTT-TAA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAANNGAATTTTTA-ACATA-AC-A--TGTA-GTT-------TATAGTCA--A-C-----GTTAACAATAA-T-TGCAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AG-TC---AATG-TCA-TTC-AAAAT---GTGAATA-TAT--GTACATG-TGCACCATTT---AANAT-TCATTT----ANANAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGAC-AGGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTG-T-CGCTTTT--C---TTAG-AC-AA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAA--AC-CAATCGTCCAT-ANAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTA-ACAATTAC-AAAAT-TCCAGCAAAAAA--CAAA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTCNGGNTGAANTA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGANAAAAACACNGAAAATAATNACCCACCCCAAA--CCTCCGCA---CATGACAGTTGG-T-C-GAGAANCACTACCCAATNCCAGATACAAACTTGTACTCTATNNANNAATGTGAATCTTTGNTTCAGGAAGAGAAATTATGAATACT--AGCACAAACGTAAANCTTTGNTATGTTATCCATANCANTGACATAACGGAAAATGAAAAGNGGACCCTAATACATTGCAGATCCTTTGAGGGACCCTAACATGTAA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : CAGCGCACTG--C-GGTTGCTTCGTC-AATAA-GGTT-ATTTCAC--GTTACTTACTCAATTACGATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA----GTT-AC-TATTAT-CGGTTT-AAAGATTGAT-ATATC-T-TCTATAT-GTCG-CGGGTTAATGGTTTTGACGCAT-TC-T-AAATTTCTGCGATATTTTCGC-ATATCA---ACACTAATC-TTTTAATAAATCGCG-AAA-A-TTACTTAAAT-GTGTAATCTGAGCTA--T-GAATACTCGC-GTGTAGGCA-TT-GAAAT-TT------TAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATCGGT----AACAA-CAGCGT-CACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAATT-TACTTCTGATTAGC-ACCAAAA----ACACATTATCGAGCAG-AATAATATTACGATGGTGATGT-TG-ATAATGTACATAA-TTAAAAAATTATGA-TGTT-ATC--AATCAG-TATG-CA-GTAATAACGCTGA--TTCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AAT-AGGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATTCTGGCAA-TA-TTTATTCAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG--AA--ATA-AC-AATACTTAAGAAAA-G-AATAAA-ACTTT-TTAA-TCAATA-C---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACT-T-TCAA--AATG-TCTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------GT--GTATGTTACAATTTA--AA-GG-AAT---TTTAGAAAAATAGGT------TTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAATTTTAA-GCAAATAC-A--TGTA-GTT-------TATAGTCA--A-C-----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAA-TCA--AATG-TCA-TTC-AAAAT---GT-AATA-TAT--GTATAT----CACCATTA---AATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAAT-TTC-ATCG-TGAC-GAAAAATATTTGAGT-GA-TTCA-GTT--AAATCTG-T-CGCTTTT--T---TAAGAAC-AA-TCT---AGCGGA---GTGCAACAACTGAATGTCACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAA--ACGCAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--G---ACTTTAAA---TTTGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAACA--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGTAA--CTTTGATATGT--TCTATAGTAATG---TA--GGAAAAT-AAAAGCGGA-CCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gt-TTAA--AATG-TCCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAATTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTATATT--AC-TTGTAAACGA-ATTTT---GAAAAAAACTTTTGGATATG-A--A--T-TA-GTT-------TATAGTCG--A-A-----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGAC-GTTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA---AATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGTAAATCTTTGTT---TTATCCATATCATTGACATAACGGAAAATG-AAAGAGAACCTTA------TATAGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCA-CGC--TAGTT-GGTAGC----TCGAATAAAG--T-ATTT-ATCAGTTACC-------TTACGAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCA--TTT-AC-TAT-AT-CG-----ATAA--T--T-ATATC-A-CCAAATAGATGA-CGG--TAAT---TT
gi|13 : aacgtcG-CT-GT-AG-ACGCGGA--CCCAGAA-TG--CAGG--TG-------TAGATAAACCTTAACGTG-TGGAA-ATTA-GGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTT-GTGAGCA-TCT----------------AAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATG-ATA--ATA-AC-TCTACTTATCAAAACG-AAT--GCACTAT-TC-A-Tgtgagcgtgtctatccatatctgatgatggacaataatcatcttt
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC----TTT-AC-TAT-A--AGCCTACAAAAGTTA-C-ATATC-A-TT------ATGA-CGG--TAAT---TTTA---CAT-TC-T-G----TCCA------CT--GTGATATCAATGA-ATACATCTTTT--A-AAGT-GCG-AAATA-TTA---A--------------------------------T-TTG-----T-TC-GGA---TT------T---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACCGG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACCACT---AATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GTA-ATG-TGCACAGTTT---AA-ATATCATTT----ACACAA----------TG-TGC------AAAT-TTC-ATTG-CGAC-AGAAAAT--TCAAGTTGG-CTCA-GTT-AAAATTCG-T-CGGTT
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAACACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTAgtt
gi|2 : ggGCGCAGCG---TG--T-GGT-G-----TC-AATAA-G--T-ATT--AC--GTAACC------ATTACG-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC----TTT-AT-TAT-A--CG-----AAAAATT--TTATATCCACTG------GTGATCGG--TAAT---TTTA---CAT-TCGTTA----TCCA------TTTTGT-AT-TCA---A-GTAAATC-TTG--A-AAAT-GCG-AAATACTTA---AAAT-GT------------A--T-G-------GCATTGA----G-TT-GGA-T-TT------T---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAATT-AA----TGAT--AC-AACACAA----A---ATT-T---GCAG-AAGAAT-TTA-GAGTTTGATGTGTG-ATAATGTACATAATTT-AAAATTTATGA-TGTCGATCTTAATCAG-TATGCCA-GT-AT-ACGCTGATGTCCAGAG-TG--CAAGATTGTGAG--GTAGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAA-TCT-GCAACTA-TTTATTAAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAG--AA-A-GATAGATATTTT-TT-A-TC-ATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CAC--AAC-G-----AAAAGTT--ACACTGG-TCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------GT--G--TGTT-TAA-TTA--AA-GGTAAT---TTTAG--AAATAGGT-----TTTTTAGA-A-TAC-TTGTAAATAATATTTTTTTGAACAGAA--TTTA-ACATA-AC-A--TGTA-GTT-------TATAGTCA--ACC-----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTC---AATGCTCA-TTCAAAAAT---GTAAATA-TATTCGTA-ATC-TGCACCATTT---AAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTT-CGCTTT-------TTAG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACAC-CAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGA---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTT----AAAACTAAAACAACTTACTATTGTTGTGATGACAATT-AAC-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAAT-AACTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCC-GCAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAAC-AAAAAAGAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACA-AGAAAA----AACGCACCCCAAG--CCTCTGCATT-TATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAACTTTGATAGGGT-TCTATAGCAATG---TA--GGAAAATAAAAAGCGGA--CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAAATC-TTTT-A-AAAT-GCG-AAATG-TTA---AA-T-GT------------A--TTG-------GC-TTG-----A-CT-GGA-T-TT------T---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATCGGT----AACAA-CAGCGT-CACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TT-CTTAAAATT-AA----TGAT--ACTAAGACAA----A---ATT-TT--GCAG-AATAATTTT--GATTTTGATGT-TG-ATAATGTACATTA-TT-AAAA-TGATGA-TGTT-ATC-TAATCAG-TATG-CG-GT-AT-ACGCTGA--TTCAAAA-TG--CAAGATTG-GAGGTGTAGATCAACCTTAACGT-GTAGAA-AAT-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATTTT-GCAA-TA-TTTAATAAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAA-GGAAA--ATA-AC-AATACTTAAGAAAA-AGAATAAATA-TTT-TC-ATTC-ATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACT-TATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTGT--G--TGTT-AAA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAGATT-TACTTTGTAAAAACTA--TTTTTGAAACGAA-TTTTA-ACATA-AC-ACTTGTATGTTAAAAAAATATAGTCACTA-CCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGAC-TTTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----G-TCAAAAATT-TCA-----AAAATTGGGTAAATA------GTAAATA-TGCACCATTTTCAAATA--TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGAC-AGGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTG-T-CGTTTTT--TTTATTAG-ACAAA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAA-TAA--CTAT--------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGT-GCATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------GT--T--AGTG-TAA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAGA---TAC-TTGTAAAT-ATATTTTT---AACTGAATTTTTA-ACATA-ACAA--TGTA-G-T-------TATAGTC---A-C------TTA--AATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGAC-GTTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AG-TC---AATG-TCATTTC-AAAAT---GTGAATACTAT--GTACATGATGCACCATTT---AATA---CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGAC-AGGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTG-TCCGCTTTTAAC---TTAG-AC-AC-TTTCTAA-CGAATTTGT-CAAC-AC---ATGT-AC------------AAACGCGCGAA-TGTT-CTTGGAAGAAAATTAA--CTAT-CTTAA------CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGC-G------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCAG---AATA--C-----T-TC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGC--TT--T-GGT-G-----TC-AATA--G--T-ATT--AC--GTA--C------ATTACAG------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC----TTT-AT-TAT-AGCCG-----AAAATTA--T--TATC-A-TCT-----GTGA-CGG--TAATTG-TTTA---CATGTTAC-G----TCCA------TTTTGA-ATATC----A-ATACATCTTTT--A-AAAT-GCGAAAATA-T-----AAATGGT------------GATT-G-------GC-TTGCAT--GCTT-GGA-T-TT------G---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT---T----AACAA--AGCTC-CA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAATG-AA----TGAT--AC-ACAACAA----------T-T---GCAG-AAG--TAATA-GATT----TGT-TG-A-AATGTCT---A-TT-GAAAAT--TGAGTATT--------TCAG-TAAT-CGAGT--T-A-G-TGA--T----AG-TAATCAAGATTG-GAG--GTGTGTCA--CT--ACGT--T---A-AATG----CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-T-ATGA
gi|6 : agacgtcGCGCACCGC--TG--TTGGTTG-----TC-AATAA-G--TTAGTT-AC--GT-ACC------ATTAC-A------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC----TTTTAC-TAT-A--CG-----AAA-GTA--T-ATA-C-A-TTT-----GTGA-CG---TA-T---TTTA---CAT-TC-T-A----TCCA------TTTTG--ATACCA---A-ATAAATC-TTTT-A-AAAT-GCG-AAATA-T-G---AAAT-GT------------A--TTG-------GC-TTGCCT--G-TTTGGA-T-TT------T-----ACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA-T-TT-CGTAAAATTTAA----TGAT--AC-AAAACAACAAAA---ATT-TT--GCAGGAATAAT--TA-GATTT--ATGT-TGGATAATGTACATAA-TT-AAAAATT-TGA-T-TT-CTC-TAATCAGTTATG-Cattgcttttaaacgatagttaatgaaaaaaatagaagtaatgtt
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAA--AC-TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGT-GCATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTA-GCAATTAG-AAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--G---ACT---AA---TTTAACGTTACATTGAATATGCACTGGTACa
gi|8 : ------ATTAC-A------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-ACTTAATTT-ACTTAC-A--CT-----AAAGTCA--C-ATATC-A-TT------TTGA-CGG--TCAT---TCTA---CAC-TC-T-G----TCCA------TTCCGT--TATC----G-ACACGTC-TTT----------------TA-T-----AAAT-GT------------A--T------------TAG-----G-TT-GAA-TATTCTGATAT---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACAGGT-----GCGG-AAATAT-CGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcaggctgttggtttaaaagagtGTGGAA-TATA-GGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGT-GTGAGAATTCT-GAAT-TACCTTATCCAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAG-AAA--ATA-GCTAAT-CTTAGGAAAA-A-GATAAGTACTGTATC----C-ATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACT-T-TCAA--Attgaaataacttgaatgata
Alignments
lowQualScore : 1 1111 33333333 11 11 11 111111 33333333 1111111 111 1111 222222222222222222 1111111 222222222222222 111 111111 11111111 111111 11 22222222 888888888888888888888888888888888888888888888888 11 111 1111 1111 11 11111 2222 111 111 111 1111 1111 11 1111 11 111 11 111 111111 111 111 1111 22 22 222222222 111 1111 2 111 1111 111 111 1 22 2 1 11 1 1 111 333333333333 11 1 11 11 1 111 111 11 111111 88888888888888888888888888888888888888 11 111 11 111 222222 2222 222 11 22222222 3333333333333 111 11 22 11 1111 1 1 1 11111 111111 111 111 11 1111 3333333333 111111 1111 1 22222222 1 1 1 11111 111 111 111 22222 1 11 111 11 22222 11 11111111 1111 22 11 222222 11 222222222 1 2222 222 1 2222 1 222 1 11 1 11 1 2222 1 1 1 1 1 1 1 1 1 222 1 1 1 1 222 11 11 2222 2222 11 4444 22222222 5555555555 1 11 22 1 333333 2222222 1 1 777777777777777777 11
lowQualScore : 6 3333 33333333 8 88 11 8 88 11 99 999999 66666666 6 6 4444444 5 66 000 5 5 5 77 2222 5 5 555555555555555555 3333333 555555555555555 5 77 777 5 333333 77 5 22222222 666666 00 33 5 22222222 5 66 5 77 5 5 5 111111111111111111111111111111111111111111111111 0 77 000 0 6 2222 2222 5 5 77 888 55 22222 6 2 6 1111 6 111 111 8888 8 8 666 0 8 7777 7777 99 1 7777 11 1 9 11 8 8 777 88 11 8 8 0 0 1 88 999 8 3 888888 8 666 88 8 777 2222 0 0 8 0 0 0 00 3 6 55 6 6 1 1 77 6 1 999999 6 2 555555555 6 88 000 2 6 4444 0 8 1 0 444 8 8 0 6666 0 3 3 1 8 666 777 1 0 33 0 0 11 2 0 0 1 0 5 111 3 111111111111 33 6 11 33 0 8 444 444 11 8 666666 88888888888888888888888888888888888888 11 555 8 11 8 8 444 0 8 0 888888 0000 8 66 666 0 1 3 999 8 99 8 66666666 7777777777777 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 3 0 2 0 0 88888 7 111111 666 99 444 6 88 7777 5555555555 8 888888 8 8 8 8 9999 6 8 8 88 0 6 55555555 0 0 0 88888 444 8 8 6 000 8 999 3 1 0 8 444 8 55555 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 00 8 88 5 66666666 3 8 8 3333 00 11 333333 8 11 555555555 8 0 3 4444 1 1 000 5 4444 5 1 000 5 77 1 5 88 5 1 4444 5 1 1 5 5 1 5 5 5 5 5 5 000 5 5 5 5 111 88 77 6 2222 8888 6 33 3 0000 3 11111111 0 6 1 8888888888 7 5 88 00 3 888888 3333333 2 7 6 7 3 6 666666666666666666 7 88
lowQualScore : . .... ........ . .. .. . .. .. .. ...... ........ . . ....... . .. ... . . . .. .... . . .................. ....... ............... . .. ... . ...... .. . ........ ...... .. .. . ........ . .. . .. . . . ................................................ . .. ... . . .... .... . . .. ... .. ..... . . . .... . ... ... .... . . ... . . .... .... .. . .... .. . . .. . . ... .. .. . . . . . .. ... . . ...... . ... .. . ... .... . . . . . . .. . . .. . . . . .. . . ...... . . ......... . .. ... . . .... . . . . ... . . . .... . . . . . ... ... . . .. . . .. . . . . . . ... . ............ .. . .. .. . . ... ... .. . ...... ...................................... .. ... . .. . . ... . . . ...... .... . .. ... . . . ... . .. . ........ ............. ... . .. . . . . .. . . .. . . . . . .... . ... . . . . . ..... . ...... ... .. ... . .. .... .......... . ...... . . . . .... . . . .. . . ........ . . . ..... ... . . . ... . ... . . . . ... . ..... . . . . . . . . . . .. ... .. ..... .. .. . .. . ........ . . . .... .. .. ...... . .. ......... . . . .... . . ... . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ... . . . . ... .. .. . .... .... . .. . .... . ........ . . . .......... . . .. .. . ...... ....... . . . . . . .................. . ..
lowQualScore : 6 0000 88888888 0 88 00 0 66 00 66 222222 88888888 7 7 3333333 7 77 000 7 7 7 99 1111 7 7 777777777777777777 1111111 000000000000000 7 99 999 7 111111 99 7 33333333 444444 66 00 7 00000000 7 99 7 99 7 7 7 111111111111111111111111111111111111111111111111 1 77 000 1 6 1111 1111 7 7 99 999 77 99999 7 5 7 8888 7 777 777 0000 0 0 888 8 0 0000 0000 00 0 0000 88 0 6 00 0 0 222 88 22 0 0 8 8 0 88 222 0 2 000000 0 111 88 0 444 2222 8 6 0 8 8 8 88 7 7 33 7 7 7 7 77 7 7 333333 7 5 000000000 7 22 222 2 7 8888 4 0 0 8 000 0 0 8 8888 8 8 2 0 0 888 555 0 0 88 0 0 00 5 8 2 0 2 5 000 2 222222222222 88 0 00 22 0 0 000 000 00 0 000000 66666666666666666666666666666666666666 00 222 0 00 0 0 000 8 0 8 888888 4444 0 44 444 8 0 8 888 0 00 0 88888888 2222222222222 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 2 0 5 0 0 55555 0 444444 888 44 000 0 66 0000 0000000000 0 222222 0 0 0 0 4444 0 0 0 88 8 0 88888888 0 0 0 55555 000 0 0 4 000 0 666 2 0 8 0 222 0 22222 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 88 0 88 0 44444444 2 0 0 0000 66 00 000000 0 00 000000000 0 8 3 5555 0 0 555 0 0000 5 0 555 5 55 0 5 55 5 0 0000 5 0 0 5 5 0 0 5 0 5 5 0 555 5 0 0 5 000 55 55 7 7777 3333 5 88 2 5555 2 00000000 2 7 0 3333333333 3 0 55 77 3 777777 7777777 0 3 7 3 3 7 000000000000000000 3 33
consensus : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-A------T-A--CG-----AAAATTA-T-ATATC----ATC---T--G-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGN-AT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAAATTTTG--CA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GT-TCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCANCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-A------T-A--CG-----AAAANTN-T-ATATC----ATC---T--G-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGT-AT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AANAC----AAAATTTCG--CA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAATTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--AC-----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA-GTT-TCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : GCGCA---CTG--C-GGTTGCTTCGTC-AATAA-GGTT-ATTTCAC--GTTACTTACTCAATTACGATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA--GT----T-ACT-A------TTAT-CGGTTTAAAGATTGAT-ATATCTTCTATA---T--G-TCG-CGGGTTAATGGTTT-T--GACGCA--T-TC--TAAATTTCTGCGATATTTTCGC-AT-AT---CA---ACACTA--ATCTTTTA-ATAAATCGCG-AAA-A-TTACTTAAAT-GTGTAATCTGAGCTA--T-GAATACTCGC-GTGTAGGCA-TTGAAATTTTAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATC----GGTAAC-AACAGCG-TCACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAA-TTTACTTCTGATTAGCACCAAAAAC----ACATTATCGAGCA-GAA-TAATATTACGATGGTGATGT-T-GATAATGTACATAATTAAAAAATT-ATGA-TGTT-ATC--AATCAG-TATGC-A-GTAATAACGCTGAT--TCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AAT-AGGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTG----GCAA-TA-TTTATT--CAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG-AAA---TA-AC-AATACTTAAGAAAA-G-AATAAA-ACTTT-TTAA-TCAATAC---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------G--TGTATGTTAC-AATTTA--AA-GG-AAT---TTTAGAAAAATAGGT------TTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAATTTTA-AGCAAATACA--TGTA-GTT-------TATAGTCA--AC-----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCATT-C-AAAA-T---GT-AATA-TAT--GT---ATA-T-CACCATTA---AATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAAT-TTC-ATCG-TGACG-AAAAATATTTGAGT-GA-TTCA-GTT--AAATCTGT-CGCTTTT--T---TAAGAAC-AAT-CT---AGCGGA---GTGCAACAACTGAATGTCACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--GACTTTAA-----ATT-TGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC-A--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AA-CTTTGATA-TGT-TCTATAGTAATG---TA--GGAAAAT-AAAAGCGGACCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gtca-TTAA--AATGT-CCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAA-TTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTATA-T-TAC-TTGTAAACGA-A---TTTTGAAAAAAACTTTTGGATATG-A-A--T-TA-GTT-------TATAGTCG--AA-----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA--A-ATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGT-AAATCTTTGTT---TTATCCATATCATTGACATAACGGAAAATGAAA-GAGAACCT--TATA-T--AGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCA-CGCTAGTT-GGTAGCT----CGAATAAAG--T-ATTT-ATCAGTTACC-------TTACGAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCATT----T-ACT-A------T-AT-CG-----ATAA--T-T-ATATC----ACCAAATAGA-TGA-CGG--TAAT---TTGTGAG---CG--TGTC--TA----TCCA------TATCTG-ATGATGGAC----A-ATAATCATCTTT
gi|13 : aacgtcGC-T-GTA-GA-CGCGGAC--CCAGAAT-G--CA---------GGTGTAGATAAACCTTAACGTG-TGGAA-ATTA-GGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTTG-TGAG----------------------CATC--TAAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATAA---TA-AC-TCTACTTATCAAAACG-AAT--GCACTAT-TC-A-T
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC--TT----T-ACT-ATAAGCCT-A--CA-----AAAGTTA-C-ATATC----AT----T--A-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------CT--GTGAT-AT---CAATGA-ATAC--ATCTTTTA-A--AGT-GCG-AAATA-TTA---A--------------------------------T-TTG-----T-TCGGA--TTT---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACC----GG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACC---ACTAATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GT-A-ATG-TGCACAGTTT---AA-ATATCATTT----ACACAA----------TG-TGC------AAAT-TTC-ATTG-CGACA-GAAAAT--TCAAGTTGG-CTCA-GTT-AAAATTCGT-CGGTTGT--T---
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAAC-ACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTA
gi|2 : ggGCGCAGCG-TG--T-GGT-G-T----C-AATAA-G--T-ATT--AC--GTAACC------ATTACG-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ATT-A------T-A--CG-----AAAAATT-TTATATC----CAC---T--GGTGATCGG--TAAT---TT-T--A---CA--T-TCGTTA----TCCA------TTTTGT-AT--T---CA---A-GTAA--ATCTTG-A-A--AAT-GCG-AAATACTTA---AAAT-GT------------A--T-G-------GCATTGA----G-TTGGA-TTTT---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AACAC----AAAATTT-G--CA-GAA-GAAT-TTA-GAGTTTGATGTGT-GATAATGTACATAATTTAAAA-TTTATGA-TGTCGATCTTAATCAG-TATGCCA-GTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAGGT--AGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAAT--CT-----GCAACTA-TTTATT--AAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAGAAAG-A---TAGATATTTT-TT-A-TCATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CACA-A-C-G-----AAAAGTT--ACACTGGTCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GGTAAT---TTTAG-AAA-TAGGT-----TTTTTAGAAT--AC-TTGTAAATAATATTTTTTTGAACAGAATTT---AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTCAATGCTCATT-C-AAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCATTT---AAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTTCGCTTTT--T-----AG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGAACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTTAAAA----CTAAAACAACTTACTATTGTTGTGATGACAATTAA-C-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAATAA-CTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCCG-CAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAA-GAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACAA--GAAAA----AACGCACCCCAAG--CCTCTGCAT-TTATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAA-CTTTGATAGGGT-TCTATAGCAATG---TA--GGAAAATAAAAAGCGGA-CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAA--ATCTTTTA-A--AAT-GCG-AAATG-TTA---AA-T-GT------------A--TTG-------GC-TTG-----A-CTGGA-TTTT---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TT-CTTAAAA-TTAA----TGAT----ACT-AAGAC----AAAATTTTG--CA-GAA-TAATTTT--GATTTTGATGT-T-GATAATGTACATTATTAAAA--TG-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--TCAAAAT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTG-TAGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-TT-----GCAA-TA-TTTAAT--AAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAAA---TA-AC-AATACTTAAGAAAA-AGAATAAATA-TTT-TC-ATTCATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACTTATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTG--TG--TGTT-A-AA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAGATT-TACTTTGTAAAAACTA--TTTTTGAAACGAA-TTTT-AACATA-ACACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGACT-TTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----GTCAAAAA-T--TT-CAAAAA-TTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAATA--TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGACA-GGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTGT-CGTTTTT--TTTATTAG-ACAAAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAA-TAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGTG-CATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------G--TT--AGTG-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAGAT---AC-TTGTAAATA-TATTTTT---AACTGAATTTTT-AACATA-ACAA-TGTA-GTT--------ATAGTCA---C------TTAA--ATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGACG-TTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AGTCAA-TG-TCATTTC-AAAA-T---GTGAATACTAT--GT-ACATGATGCACCATTT---AATA---CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTGTCCGCTTTTAAC---TTAG-AC-ACT-TTCTAA-CGAATTTGT-CAAC-AC---ATGT-AC------------AAACGCGCGAA-TGTT-CTTGGAAGAAAATTAA--CTAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGCG-------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCAG---AATA--C-----T-TC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGCTT--T-GGT-G-T----C-AATA--G--T-ATT--AC--GTA--C------ATTACAG------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC--TT----T-ATT-A------T-AGCCG-----AAAATTA-T--TATC----ATC---T--G-TGA-CGG--TAATTG-TT-T--A---CATGT-TA--CG----TCCA------TTTTGA-AT-AT---C----A-ATAC--ATCTTTTA-A--AAT-GCGAAAATA-T-----AAATGGT------------GATT-G-------GC-TTGCAT--GCTTGGA-TTTG---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT-------TAAC-AA-AGCT-CCA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAA-TGAA----TGAT----AC--ACAAC----AA----TTG--CA-GAAGTAA---TA-GATT----TGT-T-GA-AATGTCT---ATTGAAAA-T---TGAGTATT--------TCAG-TAATC-GAGT--TA--G-TGAT------AGT-AATCAAGATTG-GAGGTGT--GTCA--CT--ACGT--T---A-AATG----CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-TA-T--GAATTGCTTTTAAACGA-TA-GTTAATGAAAAAAATAGA-AGTAATGTT
gi|6 : agacgtcGCGCACCGCTG--TTGGTTG-T----C-AATAA-G--TTAGTT-AC--GT-ACC------ATTAC-A------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC--TT----TTACT-A------T-A--CG-----AAA-GTA-T-ATA-C----ATT---T--G-TGA-CG---TA-T---TT-T--A---CA--T-TC--TA----TCCA------TTTTG--AT-AC---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA--TG---AAAT-GT------------AT-T-G-------GC-TTGCCT--GTTTGGA---TT---TTACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA---TTTCGTAAAATTTAA----TGAT----AC--AAAACAACAAAAATTTTG--CAGGAA-TA--ATTA-GATTT--ATGT-TGGATAATGTACATAATTAAAAA-TT--TGA-T-TT-CTCT-AATCAGTTATGC-
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGTG-CATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTAG-CAATTAG-AAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--GACT---A-----ATT-TAACGTTACATTGAATATGCACTGGTACa
gi|8 : ------ATTAC-A------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-AC--TTAATTT-ACTTA------C-A--CT-----AAAGTCA-C-ATATC----ATT---T----TGA-CGG--TCAT---TC-T--A---CA--C-TC--TG----TCCA------TTCCGT--T-AT---C----G-ACAC--GTCTTTTATA--AAT-G------TA-TTA---GGTT-GA------------A--T-A-------TT-CTG-----A-T---A----T---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACA----GGT-GC-GGAAATA-TCGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcaggctgttggtttaaaagagtGTGGAA-TATA-GGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGTG-TGAGAATT-CT-----GAAT-TACCTTATC--CAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAGAAAA---TA-GCTAAT-CTTAGGAAAA-A-GATAAGTACTGTATC----CATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACTT-TCAA--Attgaaataacttgaatgata
Alignments
lowQualScore : 111111 33333333 11 11 11 111111 33333333 1111111 111 1111 3333333333333 2222 1111 111 111111 11111111 111111 1 22222222 888888888888888888888888888888888888888888888888 11 111 1111 1111 11 11111 2222 111 111 111 1111 1111 11 1111 111 111 11 111 111111 111 111 1111 22 222222222 111 1111 2 111 1111 111 111 1 22 2 1 11 1 1 111 333333333333 11 1 11 11 1 111 111 11 111111 88888888888888888888888888888888888888 11 111 11 111 222222 2222 222 11 22222222 4444444444444 111 11 22 11 1111 1 1 1 11111 111111 111 111 11 1111 3333333333 111111 1111 1 22222222 1 1 1 11111 111 111 111 22222 1 11 111 11 22222 11 11111111 1111 22 11 222222 11 222222222 1 2222 222 1 2222 1 222 1 11 1 11 1 2222 1 1 1 1 1 1 1 1 1 222 1 1 1 1 222 11 11 2222 2222 11 4444 22222222 5555555555 1 11 22 1 33 2222222 1 1 777777777777777777 11
lowQualScore : 8 888888 33333333 8 88 11 8 88 11 99 999999 66666666 6 6 4444444 5 66 000 5 5 5 77 2222 5 5 5 5555555555555 5 55 5 0 0000 0000 5 77 777 5 333333 77 5 22222222 666666 2 5 22222222 5 66 5 77 5 5 5 111111111111111111111111111111111111111111111111 0 77 000 0 6 2222 2222 5 5 77 888 55 22222 6 2 6 1111 6 111 111 8888 8 8 666 0 8 7777 7777 99 7777 111 6 8 8 777 88 11 8 8 0 0 1 88 999 8 3 888888 8 666 88 8 777 2222 0 0 8 0 0 0 00 3 6 6 6 6 1 1 77 6 1 999999 6 2 555555555 6 88 000 1 6 4444 0 8 1 0 444 8 8 0 6666 0 3 3 1 8 666 777 1 0 33 0 0 11 2 0 0 1 0 5 111 3 111111111111 33 6 11 33 0 8 444 444 11 8 666666 88888888888888888888888888888888888888 11 555 8 11 8 8 444 0 8 0 888888 0000 8 66 666 0 1 3 999 8 99 8 66666666 1111111111111 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 3 0 2 0 0 88888 7 111111 666 99 444 6 88 7777 5555555555 8 888888 8 8 8 8 9999 6 8 8 88 0 6 55555555 0 0 0 88888 444 8 8 6 000 8 999 3 1 0 8 444 8 55555 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 00 8 88 5 66666666 3 8 8 3333 00 11 333333 8 11 555555555 8 0 3 4444 1 1 000 5 4444 5 1 000 5 77 1 5 88 5 1 4444 5 1 1 5 5 1 5 5 5 5 5 5 000 5 5 5 5 111 88 77 6 2222 8888 6 33 3 0000 3 11111111 0 6 1 8888888888 7 5 88 00 3 11 3333333 2 7 6 7 3 6 666666666666666666 7 88
lowQualScore : . ...... ........ . .. .. . .. .. .. ...... ........ . . ....... . .. ... . . . .. .... . . . ............. . .. . . .... .... . .. ... . ...... .. . ........ ...... . . ........ . .. . .. . . . ................................................ . .. ... . . .... .... . . .. ... .. ..... . . . .... . ... ... .... . . ... . . .... .... .. .... ... . . . ... .. .. . . . . . .. ... . . ...... . ... .. . ... .... . . . . . . .. . . . . . . . .. . . ...... . . ......... . .. ... . . .... . . . . ... . . . .... . . . . . ... ... . . .. . . .. . . . . . . ... . ............ .. . .. .. . . ... ... .. . ...... ...................................... .. ... . .. . . ... . . . ...... .... . .. ... . . . ... . .. . ........ ............. ... . .. . . . . .. . . .. . . . . . .... . ... . . . . . ..... . ...... ... .. ... . .. .... .......... . ...... . . . . .... . . . .. . . ........ . . . ..... ... . . . ... . ... . . . . ... . ..... . . . . . . . . . . .. ... .. ..... .. .. . .. . ........ . . . .... .. .. ...... . .. ......... . . . .... . . ... . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ... . . . . ... .. .. . .... .... . .. . .... . ........ . . . .......... . . .. .. . .. ....... . . . . . . .................. . ..
lowQualScore : 2 888888 88888888 0 88 00 0 66 00 66 222222 88888888 7 7 3333333 7 77 000 7 7 7 99 1111 7 7 7 9999999999999 7 99 7 1 0000 7777 7 99 999 7 111111 99 7 33333333 444444 1 7 00000000 7 99 7 99 7 7 7 111111111111111111111111111111111111111111111111 1 77 000 1 6 1111 1111 7 7 99 999 77 99999 7 5 7 8888 7 777 777 0000 0 0 888 8 0 0000 0000 00 0000 888 0 0 0 222 88 22 0 0 8 8 0 88 222 0 2 000000 0 111 88 0 444 2222 8 6 0 8 8 8 88 7 7 7 7 7 7 7 77 7 7 333333 7 5 000000000 7 22 222 0 7 8888 4 0 0 8 000 0 0 8 8888 8 8 2 0 0 888 555 0 0 88 0 0 00 5 8 2 0 2 5 000 2 222222222222 88 0 00 22 0 0 000 000 00 0 000000 66666666666666666666666666666666666666 00 222 0 00 0 0 000 8 0 8 888888 4444 0 44 444 8 0 8 888 0 00 0 88888888 2222222222222 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 2 0 5 0 0 55555 0 444444 888 44 000 0 66 0000 0000000000 0 222222 0 0 0 0 4444 0 0 0 88 8 0 88888888 0 0 0 55555 000 0 0 4 000 0 666 2 0 8 0 222 0 22222 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 88 0 88 0 44444444 2 0 0 0000 66 00 000000 0 00 000000000 0 8 3 5555 0 0 555 0 0000 5 0 555 5 55 0 5 55 5 0 0000 5 0 0 5 5 0 0 5 0 5 5 0 555 5 0 0 5 000 55 55 7 7777 3333 5 88 2 5555 2 00000000 2 7 0 3333333333 3 0 55 77 3 77 7777777 0 3 7 3 3 7 000000000000000000 3 33
consensus : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG-----AAAG-TT-ATAT-ATC----ATNTG-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG-----AAAA-TT-ATAT-ATC----ATCTG-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : GCGCACTGC------GGTTGCTTCGTC-AATAA-GGTT-ATTTCAC--GTTACTTACTCAATTACGATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA--GT----T-ACT-ATTAT-----CGGTTTAAAGA-TTGATAT-ATCTTCTATATG-TCG-CGGGTTAATGGTTT-T--GACGCA--T-TC--TAAATTTCTGCGATATTTTCGCAT-AT---CA---ACACTA--ATCTTTTA-ATAAATCGCG-AAA-A-TTACTTAAAT-GTGTAATCTGAGCTA--T-GAATACTCGC-GTGTAGGCA-TTGAAATTTTAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATC----GGTAAC-AACAGCG-TCACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAA-TTTACTTCTGATTAGCACCAAAAAC----ACATTATCGAGCA-GAA-TAATATTACGATGGTGATGT-T-GATAATGTACATAATTAAAAAATT-ATGA-TGTT-ATC--AATCAG-TATGC-A-GTAATAACGCTGAT--TCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AATA-GGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTG----GCAA-TA-TTTATT--CAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG-AAA---TA-AC-AATACTTAAGAAAA-G-AATAAA-ACTTT-TTAA-TCAATAC---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------G--TGTATGTTAC-AATTTA--AA-GG-AAT---TTTAGAAAAATAGGT------TTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAATTTTA-AGCAAATACA--TGTA-GTT-------TATAGTCA--A-C----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCATT-C-AAAA-T---GT-AATA-TAT--GT---ATA-T-CACCATTA---AATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAAT-TTC-ATCG-TGACG-AAAAATATTTGAGT-GA-TTCA-GTT--AAATCTGT-CGCTTTT--T---TAAGAAC-AAT-CT---AGCGGA---GTGCAACAACTGAATGTCACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--GACTTTAA-----ATT-TGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC-A--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AA-CTTTGATAT-GTTCTATAGTAATG---TA--GGAAAAT-AAAAGCGGACCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gtca-TTAA--AATGT-CCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAA-TTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTATA-T-TAC-TTGTAAACGA-A---TTTTGAAAAAAACTTTTGGATATG-A-A--T-TA-GTT-------TATAGTCG--A-A----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA--A-ATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGT-AAATCTTTGTTT--TATCCATATCATTGACATAACGGAAAATGAAA-GAGAACCT--TATA-T--AGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCAC-GCTAGTT-GGTAGCT----CGAATAAAG--T-ATTT-ATCAGTTACC-------TTACGAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCATT----T-ACT-AT-AT-----CG-----ATAA-TT-ATATCACCAA--ATAGA-TGA-CGG--TAAT---TTGTGAG---CG--TGTC--TA----TCCA------TATCTGATGATGGAC----A-ATAATCATCTTT
gi|13 : aacgtcGC-T-GTA-GA-CGCGGAC--CCAGAAT-G--CA---------GGTGTAGATAAACCTTAACGTG-TGGAA-ATTA-GGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTTG-TGAG----------------------CATC--TAAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATAA---TA-AC-TCTACTTATCAAAACG-AAT--GCACTAT-TC-A-T
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC--TT----T-ACT-AT-AAGCCTACA-----AAAG-TT-ACAT-ATC----AT-TA-TGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------CTGTG-AT-AT---CAATGA-ATAC--ATCTTTTA-A--AGT-GCG-AAATA-TTA---A--------------------------------T-TTG-----T-TCGGA--TTT---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACC----GG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACC---ACTAATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GT-A-ATG-TGCACAGTTT---AA-ATATCATTT----ACACAA----------TG-TGC------AAAT-TTC-ATTG-CGACA-GAAAAT--TCAAGTTGG-CTCA-GTT-AAAATTCGT-CGGTTGT--T---
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAAC-ACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTA
gi|2 : ggGCGCAGCG-TG--T-GGT-G-T----C-AATAA-G--T-ATT--AC--GTAACC------ATTACG-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ATT-AT-A------CG-----AAAAATT-TTAT-ATC----CACTGGTGATCGG--TAAT---TT-T--A---CA--T-TCGTTA----TCCA------TTTTGTAT--T---CA---A-GTAA--ATCTTG-A-A--AAT-GCG-AAATACTTA---AAAT-GT------------A--T-G-------GCATTGA----G-TTGGA-TTTT---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AACAC----AAA--ATTT-GCA-GAA-GAAT-TTA-GAGTTTGATGTGT-GATAATGTACATAATTTAAAA-TTTATGA-TGTCGATCTTAATCAG-TATGCCA-GTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAGGT--AGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAAT--CT-----GCAACTA-TTTATT--AAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAGAAAG-A---TAGATATTTT-TT-A-TCATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CACA-A-C-G-----AAAAGTT--ACACTGGTCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GGTAAT---TTTAG-AAA-TAGGT-----TTTTTAGAAT--AC-TTGTAAATAATATTTTTTTGAACAGAATTT---AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTCAATGCTCATT-C-AAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCATTT---AAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTTCGCTTTT--T-----AG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGAACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTTAAAA----CTAAAACAACTTACTATTGTTGTGATGACAATTAA-C-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAATAA-CTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCCG-CAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAA-GAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACAA--GAAAA----AACGCACCCCAAG--CCTCTGCAT-TTATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAA-CTTTGATAGGGTTCTATAGCAATG---TA--GGAAAATAAAAAGCGGA-CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAA--ATCTTTTA-A--AAT-GCG-AAATG-TTA---AA-T-GT------------A--TTG-------GC-TTG-----A-CTGGA-TTTT---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TT-CTTAAAA-TTAA----TGAT----ACT-AAGAC----AAA--ATTTTGCA-GAA-TAATTTT--GATTTTGATGT-T-GATAATGTACATTATTAAAA--TG-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--TCAAAAT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTG-TAGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-TT-----GCAA-TA-TTTAAT--AAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAAA---TA-AC-AATACTTAAGAAAA-AGAATAAATA-TTT-TC-ATTCATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACTTATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTG--TG--TGTT-A-AA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAGATT-TACTTTGTAAAAACTA--TTTTTGAAACGAA-TTTT-AACATA-ACACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGACT-TTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----GTCAAAAA-T--TT-CAAAAA-TTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAATA--TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGACA-GGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTGT-CGTTTTT--TTTATTAG-ACAAAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAA-TAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGTG-CATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------G--TT--AGTG-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAGAT---AC-TTGTAAATA-TATTTTT---AACTGAATTTTT-AACATA-ACAA-TGTA-GTT--------ATAGTCA----C-----TTAA--ATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGACG-TTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AGTCAA-TG-TCATTTC-AAAA-T---GTGAATACTAT--GT-ACATGATGCACCATTT---AATA---CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTGTCCGCTTTTAAC---TTAG-AC-ACT-TTCTAA-CGAATTTGT-CAAC-AC---ATGT-AC------------AAACGCGCGAA-TGTT-CTTGGAAGAAAATTAA--CTAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGCG-------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCAG---AATA--C-----T-TC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGCTT--T-GGT-G-T----C-AATA--G--T-ATT--AC--GTA--C------ATTACAG------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC--TT----T-ATT-AT-AGC----CG-----AAAA-TT-AT-T-ATC----ATCTG-TGA-CGG--TAATTG-TT-T--A---CATGT-TA--CG----TCCA------TTTTGAAT-AT---C----A-ATAC--ATCTTTTA-A--AAT-GCGAAAATA-T-----AAATGGT------------GATT-G-------GC-TTGCAT--GCTTGGA-TTTG---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT-------TAAC-AA-AGCT-CCA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAA-TGAA----TGAT----AC--ACAAC----AA------TTGCA-GAAGTAA---TA-GATT----TGT-T-GA-AATGTCT---ATTGAAAA-T---TGAGTATT--------TCAG-TAATC-GAGT--TA--G-TGAT------AGT-AATCAAGATTG-GAGGTGT--GTCA--CT--ACGT--T---A-AATG----CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-TA-T--GAATTGCTTTTAAACGA-TA-GTTAATGAAAAAAATAGA-AGTAATGTT
gi|6 : agacgtcGCGCACCGCTG--TTGGTTG-T----C-AATAA-G--TTAGTT-AC--GT-ACC------ATTAC-A------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC--TT----TTACT-AT-A------CG-----AAAG-T--ATAT-A-C----ATTTG-TGA-CG---TA-T---TT-T--A---CA--T-TC--TA----TCCA------TTTTG-AT-AC---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA--TG---AAAT-GT------------AT-T-G-------GC-TTGCCT--GTTTGGA---TT---TTACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA---TTTCGTAAAATTTAA----TGAT----AC--AAAACAACAAAA--ATTTTGCAGGAA-TA--ATTA-GATTT--ATGT-TGGATAATGTACATAATTAAAAA-TT--TGA-T-TT-CTCT-AATCAGTTATGC-
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGTG-CATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTAG-CAATTAG-AAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--GACT---A-----ATT-TAACGTTACATTGAATATGCACTGGTACa
gi|8 : ------ATTAC-A------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-AC--TTAATTT-ACTTAC-A------CT-----AAAG-TC-ACAT-ATC----ATTT--TGA-CGG--TCAT---TC-T--A---CA--C-TC--TG----TCCA------TTCCGT-T-AT---C----G-ACAC--GTCTTTTATA--AAT-G------TA-TTA---GGTT-GA------------A--T-A-------TT-CTG-----A-T---A----T---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACA----GGT-GC-GGAAATA-TCGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcaggctgttggtttaaaagagtGTGGAA-TATA-GGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGTG-TGAGAATT-CT-----GAAT-TACCTTATC--CAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAGAAAA---TA-GCTAAT-CTTAGGAAAA-A-GATAAGTACTGTATC----CATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACTT-TCAA--Attgaaataacttgaatgata
Alignments
lowQualScore : 111111 33333333 11 11 11 111111 33333333 1111111 111 1111 333333 1111 1 2222 111 111111 11111111 111111 1 22222222 888888888888888888888888888888888888888888888888 11 111 1111 1111 11 11111 2222 111 111 111 1111 1111 11 1111 111 111 11 111 111111 111 111 1111 22 222222222 111 1111 2 111 1111 111 111 1 22 2 1 11 1 1 111 333333333333 11 1 11 11 1 111 111 11 111111 88888888888888888888888888888888888888 11 111 11 111 222222 2222 222 11 22222222 4444444444444 111 11 22 11 1111 1 1 1 11111 111111 111 111 11 1111 3333333333 111111 1111 1 22222222 1 1 1 11111 111 111 111 22222 1 11 111 11 22222 11 11111111 1111 22 11 222222 11 222222222 1 2222 222 1 2222 1 222 1 11 1 11 1 2222 1 1 1 1 1 1 1 1 1 222 1 1 1 1 222 11 11 2222 2222 11 4444 22222222 5555555555 1 11 22 1 33 2222222 1 1 777777777777777777 11
lowQualScore : 8 888888 33333333 8 88 11 8 88 11 99 999999 66666666 6 6 4444444 5 66 000 5 5 5 77 2222 5 5 5 555555 2222 1 55 5 0 5555 6 1 5 77 777 5 333333 77 5 22222222 666666 2 5 22222222 5 66 5 77 5 5 5 111111111111111111111111111111111111111111111111 0 77 000 0 6 2222 2222 5 5 77 888 55 22222 6 2 6 1111 6 111 111 8888 8 8 666 0 8 7777 7777 99 7777 111 6 8 8 777 88 11 8 8 0 0 1 88 999 8 3 888888 8 666 88 8 777 2222 0 0 8 0 0 0 00 3 6 6 6 6 1 1 77 6 1 999999 6 2 555555555 6 88 000 1 6 4444 0 8 1 0 444 8 8 0 6666 0 3 3 1 8 666 777 1 0 33 0 0 11 2 0 0 1 0 5 111 3 111111111111 33 6 11 33 0 8 444 444 11 8 666666 88888888888888888888888888888888888888 11 555 8 11 8 8 444 0 8 0 888888 0000 8 66 666 0 1 3 999 8 99 8 66666666 1111111111111 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 3 0 2 0 0 88888 7 111111 666 99 444 6 88 7777 5555555555 8 888888 8 8 8 8 9999 6 8 8 88 0 6 55555555 0 0 0 88888 444 8 8 6 000 8 999 3 1 0 8 444 8 55555 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 00 8 88 5 66666666 3 8 8 3333 00 11 333333 8 11 555555555 8 0 3 4444 1 1 000 5 4444 5 1 000 5 77 1 5 88 5 1 4444 5 1 1 5 5 1 5 5 5 5 5 5 000 5 5 5 5 111 88 77 6 2222 8888 6 33 3 0000 3 11111111 0 6 1 8888888888 7 5 88 00 3 11 3333333 2 7 6 7 3 6 666666666666666666 7 88
lowQualScore : . ...... ........ . .. .. . .. .. .. ...... ........ . . ....... . .. ... . . . .. .... . . . ...... .... . .. . . .... . . . .. ... . ...... .. . ........ ...... . . ........ . .. . .. . . . ................................................ . .. ... . . .... .... . . .. ... .. ..... . . . .... . ... ... .... . . ... . . .... .... .. .... ... . . . ... .. .. . . . . . .. ... . . ...... . ... .. . ... .... . . . . . . .. . . . . . . . .. . . ...... . . ......... . .. ... . . .... . . . . ... . . . .... . . . . . ... ... . . .. . . .. . . . . . . ... . ............ .. . .. .. . . ... ... .. . ...... ...................................... .. ... . .. . . ... . . . ...... .... . .. ... . . . ... . .. . ........ ............. ... . .. . . . . .. . . .. . . . . . .... . ... . . . . . ..... . ...... ... .. ... . .. .... .......... . ...... . . . . .... . . . .. . . ........ . . . ..... ... . . . ... . ... . . . . ... . ..... . . . . . . . . . . .. ... .. ..... .. .. . .. . ........ . . . .... .. .. ...... . .. ......... . . . .... . . ... . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ... . . . . ... .. .. . .... .... . .. . .... . ........ . . . .......... . . .. .. . .. ....... . . . . . . .................. . ..
lowQualScore : 2 888888 88888888 0 88 00 0 66 00 66 222222 88888888 7 7 3333333 7 77 000 7 7 7 99 1111 7 7 7 777777 1111 4 99 7 1 7777 6 7 7 99 999 7 111111 99 7 33333333 444444 1 7 00000000 7 99 7 99 7 7 7 111111111111111111111111111111111111111111111111 1 77 000 1 6 1111 1111 7 7 99 999 77 99999 7 5 7 8888 7 777 777 0000 0 0 888 8 0 0000 0000 00 0000 888 0 0 0 222 88 22 0 0 8 8 0 88 222 0 2 000000 0 111 88 0 444 2222 8 6 0 8 8 8 88 7 7 7 7 7 7 7 77 7 7 333333 7 5 000000000 7 22 222 0 7 8888 4 0 0 8 000 0 0 8 8888 8 8 2 0 0 888 555 0 0 88 0 0 00 5 8 2 0 2 5 000 2 222222222222 88 0 00 22 0 0 000 000 00 0 000000 66666666666666666666666666666666666666 00 222 0 00 0 0 000 8 0 8 888888 4444 0 44 444 8 0 8 888 0 00 0 88888888 2222222222222 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 2 0 5 0 0 55555 0 444444 888 44 000 0 66 0000 0000000000 0 222222 0 0 0 0 4444 0 0 0 88 8 0 88888888 0 0 0 55555 000 0 0 4 000 0 666 2 0 8 0 222 0 22222 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 88 0 88 0 44444444 2 0 0 0000 66 00 000000 0 00 000000000 0 8 3 5555 0 0 555 0 0000 5 0 555 5 55 0 5 55 5 0 0000 5 0 0 5 5 0 0 5 0 5 5 0 555 5 0 0 5 000 55 55 7 7777 3333 5 88 2 5555 2 00000000 2 7 0 3333333333 3 0 55 77 3 77 7777777 0 3 7 3 3 7 000000000000000000 3 33
consensus : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : GCGCACTGC------GGTTGCTTCGTC-AATAA-GGTT-ATTTCAC--GTTACTTACTCAATTACGATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA--GT----T-ACT-ATTAT-----CGGTTTAAAGATTGATAT-ATCTTCTATATGTCG-CGGGTTAATGGTTT-T--GACGCA--T-TC--TAAATTTCTGCGATATTTTCGCAT-AT---CA---ACACTA--ATCTTTTA-ATAAATCGCG-AAA-A-TTACTTAAAT-GTGTAATCTGAGCTA--T-GAATACTCGC-GTGTAGGCA-TTGAAATTTTAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATC----GGTAAC-AACAGCG-TCACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAA-TTTACTTCTGATTAGCACCAAAAAC----ACATTATCGAGCA-GAA-TAATATTACGATGGTGATGT-T-GATAATGTACATAATTAAAAAATT-ATGA-TGTT-ATC--AATCAG-TATGC-A-GTAATAACGCTGAT--TCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AATA-GGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTG----GCAA-TA-TTTATT--CAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG-AAA---TA-AC-AATACTTAAGAAAA-G-AATAAA-ACTTT-TTAA-TCAATAC---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------G--TGTATGTTAC-AATTTA--AA-GG-AAT---TTTAGAAAAATAGGT------TTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAATTTTA-AGCAAATACA--TGTA-GTT-------TATAGTCA--A-C----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCATT-C-AAAA-T---GT-AATA-TAT--GT---ATA-T-CACCATTA---AATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAAT-TTC-ATCG-TGACG-AAAAATATTTGAGT-GA-TTCA-GTT--AAATCTGT-CGCTTTT--T---TAAGAAC-AAT-CT---AGCGGA---GTGCAACAACTGAATGTCACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--GACTTTAA-----ATT-TGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC-A--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AA-CTTTGATAT-GTTCTATAGTAATG---TA--GGAAAAT-AAAAGCGGACCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gtca-TTAA--AATGT-CCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAA-TTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTATA-T-TAC-TTGTAAACGA-A---TTTTGAAAAAAACTTTTGGATATG-A-A--T-TA-GTT-------TATAGTCG--A-A----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA--A-ATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGT-AAATCTTTGTTT--TATCCATATCATTGACATAACGGAAAATGAAA-GAGAACCT--TATA-T--AGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCAC-GCTAGTT-GGTAGCT----CGAATAAAG--T-ATTT-ATCAGTTACC-------TTACGAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCATT----T-ACT-AT-AT-----CG----ATAA-TT-ATATCACCAA--ATAGATGA-CGG--TAAT---TTGTGAG---CG--TGTC--TA----TCCA------TATCTGATGATGGAC----A-ATAATCATCTTT
gi|13 : aacgtcGC-T-GTA-GA-CGCGGAC--CCAGAAT-G--CA---------GGTGTAGATAAACCTTAACGTG-TGGAA-ATTA-GGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTTG-TGAG----------------------CATC--TAAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATAA---TA-AC-TCTACTTATCAAAACG-AAT--GCACTAT-TC-A-T
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC--TT----T-ACT-AT-AAGCCTACA----AAAG-TT-ACAT-ATC----AT-TATGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------CTGTG-AT-AT---CAATGA-ATAC--ATCTTTTA-A--AGT-GCG-AAATA-TTA---A--------------------------------T-TTG-----T-TCGGA--TTT---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACC----GG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACC---ACTAATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GT-A-ATG-TGCACAGTTT---AA-ATATCATTT----ACACAA----------TG-TGC------AAAT-TTC-ATTG-CGACA-GAAAAT--TCAAGTTGG-CTCA-GTT-AAAATTCGT-CGGTTGT--T---
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAAC-ACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTA
gi|2 : ggGCGCAGCG-TG--T-GGT-G-T----C-AATAA-G--T-ATT--AC--GTAACC------ATTACG-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ATT-AT-A------CG----AAAAATT-TTAT-ATCC---ACTGGTGATCGG--TAAT---TT-T--A---CA--T-TCGTTA----TCCA------TTTTGTAT--T---CA---A-GTAA--ATCTTG-A-A--AAT-GCG-AAATACTTA---AAAT-GT------------A--T-G-------GCATTGA----G-TTGGA-TTTT---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AACAC----AAA--ATTT-GCA-GAA-GAAT-TTA-GAGTTTGATGTGT-GATAATGTACATAATTTAAAA-TTTATGA-TGTCGATCTTAATCAG-TATGCCA-GTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAGGT--AGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAAT--CT-----GCAACTA-TTTATT--AAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAGAAAG-A---TAGATATTTT-TT-A-TCATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CACA-A-C-G-----AAAAGTT--ACACTGGTCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GGTAAT---TTTAG-AAA-TAGGT-----TTTTTAGAAT--AC-TTGTAAATAATATTTTTTTGAACAGAATTT---AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTCAATGCTCATT-C-AAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCATTT---AAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTTCGCTTTT--T-----AG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGAACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTTAAAA----CTAAAACAACTTACTATTGTTGTGATGACAATTAA-C-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAATAA-CTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCCG-CAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAA-GAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACAA--GAAAA----AACGCACCCCAAG--CCTCTGCAT-TTATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAA-CTTTGATAGGGTTCTATAGCAATG---TA--GGAAAATAAAAAGCGGA-CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAA--ATCTTTTA-A--AAT-GCG-AAATG-TTA---AA-T-GT------------A--TTG-------GC-TTG-----A-CTGGA-TTTT---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TT-CTTAAAA-TTAA----TGAT----ACT-AAGAC----AAA--ATTTTGCA-GAA-TAATTTT--GATTTTGATGT-T-GATAATGTACATTATTAAAA--TG-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--TCAAAAT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTG-TAGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-TT-----GCAA-TA-TTTAAT--AAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAAA---TA-AC-AATACTTAAGAAAA-AGAATAAATA-TTT-TC-ATTCATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACTTATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTG--TG--TGTT-A-AA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAGATT-TACTTTGTAAAAACTA--TTTTTGAAACGAA-TTTT-AACATA-ACACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGACT-TTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----GTCAAAAA-T--TT-CAAAAA-TTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAATA--TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGACA-GGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTGT-CGTTTTT--TTTATTAG-ACAAAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAA-TAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGTG-CATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------G--TT--AGTG-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAGAT---AC-TTGTAAATA-TATTTTT---AACTGAATTTTT-AACATA-ACAA-TGTA-GTT--------ATAGTCA----C-----TTAA--ATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGACG-TTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AGTCAA-TG-TCATTTC-AAAA-T---GTGAATACTAT--GT-ACATGATGCACCATTT---AATA---CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTGTCCGCTTTTAAC---TTAG-AC-ACT-TTCTAA-CGAATTTGT-CAAC-AC---ATGT-AC------------AAACGCGCGAA-TGTT-CTTGGAAGAAAATTAA--CTAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGCG-------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCAG---AATA--C-----T-TC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGCTT--T-GGT-G-T----C-AATA--G--T-ATT--AC--GTA--C------ATTACAG------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC--TT----T-ATT-AT-AGC----CG----AAAA-TT-AT-T-ATC----ATCTGTGA-CGG--TAATTG-TT-T--A---CATGT-TA--CG----TCCA------TTTTGAAT-AT---C----A-ATAC--ATCTTTTA-A--AAT-GCGAAAATA-T-----AAATGGT------------GATT-G-------GC-TTGCAT--GCTTGGA-TTTG---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT-------TAAC-AA-AGCT-CCA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAA-TGAA----TGAT----AC--ACAAC----AA------TTGCA-GAAGTAA---TA-GATT----TGT-T-GA-AATGTCT---ATTGAAAA-T---TGAGTATT--------TCAG-TAATC-GAGT--TA--G-TGAT------AGT-AATCAAGATTG-GAGGTGT--GTCA--CT--ACGT--T---A-AATG----CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-TA-T--GAATTGCTTTTAAACGA-TA-GTTAATGAAAAAAATAGA-AGTAATGTT
gi|6 : agacgtcGCGCACCGCTG--TTGGTTG-T----C-AATAA-G--TTAGTT-AC--GT-ACC------ATTAC-A------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC--TT----TTACT-AT-A------CG----AAAG-T--ATAT-A-C----ATTTGTGA-CG---TA-T---TT-T--A---CA--T-TC--TA----TCCA------TTTTG-AT-AC---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA--TG---AAAT-GT------------AT-T-G-------GC-TTGCCT--GTTTGGA---TT---TTACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA---TTTCGTAAAATTTAA----TGAT----AC--AAAACAACAAAA--ATTTTGCAGGAA-TA--ATTA-GATTT--ATGT-TGGATAATGTACATAATTAAAAA-TT--TGA-T-TT-CTCT-AATCAGTTATGC-
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGTG-CATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTAG-CAATTAG-AAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--GACT---A-----ATT-TAACGTTACATTGAATATGCACTGGTACa
gi|8 : ------ATTAC-A------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-AC--TTAATTT-ACTTAC-A------CT----AAAG-TC-ACAT-ATC----ATTT-TGA-CGG--TCAT---TC-T--A---CA--C-TC--TG----TCCA------TTCCGT-T-AT---C----G-ACAC--GTCTTTTATA--AAT-G------TA-TTA---GGTT-GA------------A--T-A-------TT-CTG-----A-T---A----T---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACA----GGT-GC-GGAAATA-TCGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcaggctgttggtttaaaagagtGTGGAA-TATA-GGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGTG-TGAGAATT-CT-----GAAT-TACCTTATC--CAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAGAAAA---TA-GCTAAT-CTTAGGAAAA-A-GATAAGTACTGTATC----CATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACTT-TCAA--Attgaaataacttgaatgata
Alignments
lowQualScore : 111111 33333333 11 11 11 111111 33333333 1111111 111 1111 333333 1111 1 2222 111 111111 11111111 111111 1 22222222 888888888888888888888888888888888888888888888888 11 111 1111 1111 11 11111 2222 111 111 111 1111 1111 11 1111 111 111 11 111 111111 111 111 1111 22 222222222 111 1111 2 111 1111 111 111 1 22 2 1 11 1 1 111 333333333333 11 1 11 11 1 111 111 11 111111 88888888888888888888888888888888888888 11 111 11 111 222222 2222 222 11 22222222 4444444444444 111 11 22 11 1111 1 1 1 11111 111111 111 111 11 1111 3333333333 111111 1111 1 22222222 1 1 1 11111 111 111 111 22222 1 11 111 11 22222 11 11111111 1111 22 11 222222 11 222222222 1 2222 222 1 2222 1 222 1 11 1 11 1 2222 1 1 1 1 1 1 1 1 1 222 1 1 1 1 222 11 11 2222 2222 11 4444 22222222 5555555555 1 11 22 1 33 2222222 1 1 777777777777777777 11
lowQualScore : 8 888888 33333333 8 88 11 8 88 11 99 999999 66666666 6 6 4444444 5 66 000 5 5 5 77 2222 5 5 5 555555 2222 1 55 5 0 5555 6 1 5 77 777 5 333333 77 5 22222222 666666 2 5 22222222 5 66 5 77 5 5 5 111111111111111111111111111111111111111111111111 0 77 000 0 6 2222 2222 5 5 77 888 55 22222 6 2 6 1111 6 111 111 8888 8 8 666 0 8 7777 7777 99 7777 111 6 8 8 777 88 11 8 8 0 0 1 88 999 8 3 888888 8 666 88 8 777 2222 0 0 8 0 0 0 00 3 6 6 6 6 1 1 77 6 1 999999 6 2 555555555 6 88 000 1 6 4444 0 8 1 0 444 8 8 0 6666 0 3 3 1 8 666 777 1 0 33 0 0 11 2 0 0 1 0 5 111 3 111111111111 33 6 11 33 0 8 444 444 11 8 666666 88888888888888888888888888888888888888 11 555 8 11 8 8 444 0 8 0 888888 0000 8 66 666 0 1 3 999 8 99 8 66666666 1111111111111 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 3 0 2 0 0 88888 7 111111 666 99 444 6 88 7777 5555555555 8 888888 8 8 8 8 9999 6 8 8 88 0 6 55555555 0 0 0 88888 444 8 8 6 000 8 999 3 1 0 8 444 8 55555 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 00 8 88 5 66666666 3 8 8 3333 00 11 333333 8 11 555555555 8 0 3 4444 1 1 000 5 4444 5 1 000 5 77 1 5 88 5 1 4444 5 1 1 5 5 1 5 5 5 5 5 5 000 5 5 5 5 111 88 77 6 2222 8888 6 33 3 0000 3 11111111 0 6 1 8888888888 7 5 88 00 3 11 3333333 2 7 6 7 3 6 666666666666666666 7 88
lowQualScore : . ...... ........ . .. .. . .. .. .. ...... ........ . . ....... . .. ... . . . .. .... . . . ...... .... . .. . . .... . . . .. ... . ...... .. . ........ ...... . . ........ . .. . .. . . . ................................................ . .. ... . . .... .... . . .. ... .. ..... . . . .... . ... ... .... . . ... . . .... .... .. .... ... . . . ... .. .. . . . . . .. ... . . ...... . ... .. . ... .... . . . . . . .. . . . . . . . .. . . ...... . . ......... . .. ... . . .... . . . . ... . . . .... . . . . . ... ... . . .. . . .. . . . . . . ... . ............ .. . .. .. . . ... ... .. . ...... ...................................... .. ... . .. . . ... . . . ...... .... . .. ... . . . ... . .. . ........ ............. ... . .. . . . . .. . . .. . . . . . .... . ... . . . . . ..... . ...... ... .. ... . .. .... .......... . ...... . . . . .... . . . .. . . ........ . . . ..... ... . . . ... . ... . . . . ... . ..... . . . . . . . . . . .. ... .. ..... .. .. . .. . ........ . . . .... .. .. ...... . .. ......... . . . .... . . ... . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ... . . . . ... .. .. . .... .... . .. . .... . ........ . . . .......... . . .. .. . .. ....... . . . . . . .................. . ..
lowQualScore : 2 888888 88888888 0 88 00 0 66 00 66 222222 88888888 7 7 3333333 7 77 000 7 7 7 99 1111 7 7 7 777777 1111 4 99 7 1 7777 6 7 7 99 999 7 111111 99 7 33333333 444444 1 7 00000000 7 99 7 99 7 7 7 111111111111111111111111111111111111111111111111 1 77 000 1 6 1111 1111 7 7 99 999 77 99999 7 5 7 8888 7 777 777 0000 0 0 888 8 0 0000 0000 00 0000 888 0 0 0 222 88 22 0 0 8 8 0 88 222 0 2 000000 0 111 88 0 444 2222 8 6 0 8 8 8 88 7 7 7 7 7 7 7 77 7 7 333333 7 5 000000000 7 22 222 0 7 8888 4 0 0 8 000 0 0 8 8888 8 8 2 0 0 888 555 0 0 88 0 0 00 5 8 2 0 2 5 000 2 222222222222 88 0 00 22 0 0 000 000 00 0 000000 66666666666666666666666666666666666666 00 222 0 00 0 0 000 8 0 8 888888 4444 0 44 444 8 0 8 888 0 00 0 88888888 2222222222222 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 2 0 5 0 0 55555 0 444444 888 44 000 0 66 0000 0000000000 0 222222 0 0 0 0 4444 0 0 0 88 8 0 88888888 0 0 0 55555 000 0 0 4 000 0 666 2 0 8 0 222 0 22222 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 88 0 88 0 44444444 2 0 0 0000 66 00 000000 0 00 000000000 0 8 3 5555 0 0 555 0 0000 5 0 555 5 55 0 5 55 5 0 0000 5 0 0 5 5 0 0 5 0 5 5 0 555 5 0 0 5 000 55 55 7 7777 3333 5 88 2 5555 2 00000000 2 7 0 3333333333 3 0 55 77 3 77 7777777 0 3 7 3 3 7 000000000000000000 3 33
consensus : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : GCGCACTGC------GGTTGCTTCGTC-AATAA-GGTT-ATTTCAC--GTTACTTACTCAATTACGATTTGTTGTATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA--GT----T-ACT-ATTAT-----CGGTTTAAAGATTGATAT-ATCTTCTATATGTCG-CGGGTTAATGGTTT-T--GACGCA--T-TC--TAAATTTCTGCGATATTTTCGCAT-AT---CA---ACACTA--ATCTTTTA-ATAAATCGCG-AAA-A-TTACTTAAAT-GTGTAATCTGAGCTA--T-GAATACTCGC-GTGTAGGCA-TTGAAATTTTAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATC----GGTAAC-AACAGCG-TCACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAA-TTTACTTCTGATTAGCACCAAAAAC----ACATTATCGAGCA-GAA-TAATATTACGATGGTGATGT-T-GATAATGTACATAATTAAAAAATT-ATGA-TGTT-ATC--AATCAG-TATGC-A-GTAATAACGCTGAT--TCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AATA-GGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTG----GCAA-TA-TTTATT--CAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG-AAA---TA-AC-AATACTTAAGAAAA-G-AATAAA-ACTTT-TTAA-TCAATAC---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------G--TGTATGTTAC-AATTTA--AA-GG-AAT---TTTAGAAAAATAGGT------TTTTAGATTATTT-TTGTAAATAATA---TTTTGAACAGAATTTTA-AGCAAATACA--TGTA-GTT-------TATAGTCA--A-C----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCATT-C-AAAA-T---GT-AATA-TAT--GT---ATA-T-CACCATTA---AATAT-CAATTT----ACAGAA----------TGTTGC-AATC-AAAT-TTC-ATCG-TGACG-AAAAATATTTGAGT-GA-TTCA-GTT--AAATCTGT-CGCTTTT--T---TAAGAAC-AAT-CT---AGCGGA---GTGCAACAACTGAATGTCACAC-CGTGGCCGTAAATGTAATAAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--GACTTTAA-----ATT-TGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC-A--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AA-CTTTGATAT-GTTCTATAGTAATG---TA--GGAAAAT-AAAAGCGGACCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gtca-TTAA--AATGT-CCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAA-TTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTATA-T-TAC-TTGTAAACGA-A---TTTTGAAAAAAACTTTTGGATATG-A-A--T-TA-GTT-------TATAGTCG--A-A----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGACG-TTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA--A-ATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGT-AAATCTTTGTTT--TATCCATATCATTGACATAACGGAAAATGAAA-GAGAACCT--TATA-T--AGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCAC-GCTAGTT-GGTAGCT----CGAATAAAG--T-ATTT-ATCAGTTACC-------TTACGAA-----GTA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCATT----T-ACT-AT-AT-----CG----ATAA-TT-ATATCACCAA--ATAGATGA-CGG--TAAT---TTGTGAG---CG--TGTC--TA----TCCA------TATCTGATGATGGAC----A-ATAATCATCTTT
gi|13 : aacgtcGC-T-GTA-GA-CGCGGAC--CCAGAAT-G--CA---------GGTGTAGATAAACCTTAACGTG-TGGAA-ATTA-GGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTTG-TGAG----------------------CATC--TAAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATAA---TA-AC-TCTACTTATCAAAACG-AAT--GCACTAT-TC-A-T
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC--TT----T-ACT-AT-AAGCCTACA----AAAG-TT-ACAT-ATC----AT-TATGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------CTGTG-AT-AT---CAATGA-ATAC--ATCTTTTA-A--AGT-GCG-AAATA-TTA---A--------------------------------T-TTG-----T-TCGGA--TTT---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACC----GG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTAACAGAAAG--TAAA--TATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACC---ACTAATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GT-A-ATG-TGCACAGTTT---AA-ATATCATTT----ACACAA----------TG-TGC------AAAT-TTC-ATTG-CGACA-GAAAAT--TCAAGTTGG-CTCA-GTT-AAAATTCGT-CGGTTGT--T---
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAAC-ACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTA
gi|2 : ggGCGCAGCG-TG--T-GGT-G-T----C-AATAA-G--T-ATT--AC--GTAACC------ATTACG-------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ATT-AT-A------CG----AAAAATT-TTAT-ATCC---ACTGGTGATCGG--TAAT---TT-T--A---CA--T-TCGTTA----TCCA------TTTTGTAT--T---CA---A-GTAA--ATCTTG-A-A--AAT-GCG-AAATACTTA---AAAT-GT------------A--T-G-------GCATTGA----G-TTGGA-TTTT---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AACAC----AAA--ATTT-GCA-GAA-GAAT-TTA-GAGTTTGATGTGT-GATAATGTACATAATTTAAAA-TTTATGA-TGTCGATCTTAATCAG-TATGCCA-GTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAGGT--AGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAAT--CT-----GCAACTA-TTTATT--AAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAGAAAG-A---TAGATATTTT-TT-A-TCATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CACA-A-C-G-----AAAAGTT--ACACTGGTCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GGTAAT---TTTAG-AAA-TAGGT-----TTTTTAGAAT--AC-TTGTAAATAATATTTTTTTGAACAGAATTT---AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTCAATGCTCATT-C-AAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCATTT---AAAAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAAATA-TTGAGTAGACTTCA-GTT-AGAATTTGTTCGCTTTT--T-----AG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCACACGCGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCAGCAAAAAA--CAGA--TGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGAACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTTAAAA----CTAAAACAACTTACTATTGTTGTGATGACAATTAA-C-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAATAA-CTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCCG-CAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAA-GAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACAA--GAAAA----AACGCACCCCAAG--CCTCTGCAT-TTATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAA-CTTTGATAGGGTTCTATAGCAATG---TA--GGAAAATAAAAAGCGGA-CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAA--ATCTTTTA-A--AAT-GCG-AAATG-TTA---AA-T-GT------------A--TTG-------GC-TTG-----A-CTGGA-TTTT---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TT-CTTAAAA-TTAA----TGAT----ACT-AAGAC----AAA--ATTTTGCA-GAA-TAATTTT--GATTTTGATGT-T-GATAATGTACATTATTAAAA--TG-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--TCAAAAT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTG-TAGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-TT-----GCAA-TA-TTTAAT--AAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAAA---TA-AC-AATACTTAAGAAAA-AGAATAAATA-TTT-TC-ATTCATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACTTATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTG--TG--TGTT-A-AA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAGATT-TACTTTGTAAAAACTA--TTTTTGAAACGAA-TTTT-AACATA-ACACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGACT-TTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----GTCAAAAA-T--TT-CAAAAA-TTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAATA--TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGACA-GGAAATT-TTGAGTAGA-TTCAGGTTAAAAATTTGT-CGTTTTT--TTTATTAG-ACAAAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAT-CGT-GCCGTGAATATAAT-A-CGTTGCTTGAAAATGAA-TAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGTG-CATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------G--TT--AGTG-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAGAT---AC-TTGTAAATA-TATTTTT---AACTGAATTTTT-AACATA-ACAA-TGTA-GTT--------ATAGTCA----C-----TTAA--ATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGACG-TTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AGTCAA-TG-TCATTTC-AAAA-T---GTGAATACTAT--GT-ACATGATGCACCATTT---AATA---CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAATTA--GGAGTAGA-TTCA-GTT-AAA--TTGTCCGCTTTTAAC---TTAG-AC-ACT-TTCTAA-CGAATTTGT-CAAC-AC---ATGT-AC------------AAACGCGCGAA-TGTT-CTTGGAAGAAAATTAA--CTAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGCG-------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCAG---AATA--C-----T-TC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGCTT--T-GGT-G-T----C-AATA--G--T-ATT--AC--GTA--C------ATTACAG------GTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC--TT----T-ATT-AT-AGC----CG----AAAA-TT-AT-T-ATC----ATCTGTGA-CGG--TAATTG-TT-T--A---CATGT-TA--CG----TCCA------TTTTGAAT-AT---C----A-ATAC--ATCTTTTA-A--AAT-GCGAAAATA-T-----AAATGGT------------GATT-G-------GC-TTGCAT--GCTTGGA-TTTG---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT-------TAAC-AA-AGCT-CCA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAA-TGAA----TGAT----AC--ACAAC----AA------TTGCA-GAAGTAA---TA-GATT----TGT-T-GA-AATGTCT---ATTGAAAA-T---TGAGTATT--------TCAG-TAATC-GAGT--TA--G-TGAT------AGT-AATCAAGATTG-GAGGTGT--GTCA--CT--ACGT--T---A-AATG----CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-TA-T--GAATTGCTTTTAAACGA-TA-GTTAATGAAAAAAATAGA-AGTAATGTT
gi|6 : agacgtcGCGCACCGCTG--TTGGTTG-T----C-AATAA-G--TTAGTT-AC--GT-ACC------ATTAC-A------GTA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC--TT----TTACT-AT-A------CG----AAAG-T--ATAT-A-C----ATTTGTGA-CG---TA-T---TT-T--A---CA--T-TC--TA----TCCA------TTTTG-AT-AC---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA--TG---AAAT-GT------------AT-T-G-------GC-TTGCCT--GTTTGGA---TT---TTACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA---TTTCGTAAAATTTAA----TGAT----AC--AAAACAACAAAA--ATTTTGCAGGAA-TA--ATTA-GATTT--ATGT-TGGATAATGTACATAATTAAAAA-TT--TGA-T-TT-CTCT-AATCAGTTATGC-
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCACGC-CGT-GCCGTAAGTGTAATA--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGTG-CATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTAG-CAATTAG-AAAAT-TGCAACAAAAAA--TAAA--TGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--GACT---A-----ATT-TAACGTTACATTGAATATGCACTGGTACa
gi|8 : ------ATTAC-A------TTA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-AC--TTAATTT-ACTTAC-A------CT----AAAG-TC-ACAT-ATC----ATTT-TGA-CGG--TCAT---TC-T--A---CA--C-TC--TG----TCCA------TTCCGT-T-AT---C----G-ACAC--GTCTTTTATA--AAT-G------TA-TTA---GGTT-GA------------A--T-A-------TT-CTG-----A-T---A----T---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACA----GGT-GC-GGAAATA-TCGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcaggctgttggtttaaaagagtGTGGAA-TATA-GGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGTG-TGAGAATT-CT-----GAAT-TACCTTATC--CAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAGAAAA---TA-GCTAAT-CTTAGGAAAA-A-GATAAGTACTGTATC----CATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACTT-TCAA--Attgaaataacttgaatgata
blockSeqs : C TAGTT AGCT G AA . T T CA TA . GAA . . ACT . CT . G A G CA AATT T T . AGCCTA . A T C AA A A T . TG G GAG TG G GTTA . G G CAATG . TC T . . A C AAATGGTGATTGGCTTGCATGC T . C . . T G . A TA CGGTG A C T CCA . . . TAT . G GT T . . T AACA A T G G ATT A TT G G A A TTA G G GATCTT T CA A . GTC AAT T GG G C A C C A C AA A T ATACTG G G TGCTTTTAA C CC GAA C G A A . T AGA C T CGA C C A A AT AGT C . TC C G TT G C T T TT T ATAACTGCTCC AA G AT TT T G CGC TGA GT G TCCC CCCCAAATAAACGGATAAAAAAAGACTATGACTG . TA . AG T T AGG . AGCCGA TTT T AT TTT A C TTG . CT T AAAAAAAT CTACCTGAAGTT TA T AT . . C G TC C G AC G C C T . ATT . TG A C C T A TTGG A TATTC AA GA TCA A TA TACA TTGCCATAAG . AAATCA A G T A ATT T C G AA T TTTATT . A T CTAA TTT . . C ACG . AA G G T ACT G AACAC G . A . . T G GT C GT TATA T GA . TG C TAAA A . . GCA AC GT GTTCTG T CG ACTAAT C C . T T C C AATG T T TCG . CG T A TA . G . A G A A T T . A . . . G GGA T G G . . AA CG G ACC TAAT C GC T ATTC A GGGTCC C T ATACAAACTT T . TA AA T GG ACATAAC G A C A T G AAACTTGATTTAAAAACG T TA
blockSeqs : G TGTT TGT . A . . T . AA . AG . . T . TC . . . . . . . . . GC . . T . C T A . . . . A . . TA . T . GGAC . . . . . . . AAATGTATTGGCTTGCCTGT T . C . . . . . G . C . C . C . . . AT . . T . . . . . A T . . AT A TT . . T A GA . G ATCT . GA A . C G . G G . . . . A T G . T TTTT . G TTT . T T T . A . . T . . . AGA T T T . A . T . A . . G G G A T T T AAACGTTT . A . T . . . . . . T ATGACGGTT . T . . . . . . A TT . CT TTT A T TT . A . T ACCGTTA T . . . . . . T . A . . . . . . TC . GG A . C . . AT A CTAT AC G . T T . . . AAATCA . . . . TTT A . . A C AACTT . . . A . . . C AT . AA G T . C . AAC T . A . . T . . T T TCAT T A . T C CAGA G . . AC A . . . . A . . G AA . T . T TTT A TGGATC . G . . A . . TA A . . . . . GAAA . .
blockSeqs : C TGT GT . A . . . . A . G . . T . TC . . . . . . . . . T . . T . . C G . . . . A . . TG . A . CA . . . . . . . AAATGTATGGCATTGAG T . T . . . . . C . C . C . C . . . AT . . T . . . . . A T . . A A T . . A A T . A CTCT . T A . T G . G A . . . . A T G . T TATG . G TCT . T A A . A . . G . . . AG T C T . A . A . . . . G . A A . T . AACG . . . . . . . . . . T GAATAG . A . . . . . . T AT . A T C T TT . . . T AAGTT T . . . . . . T . T . . . . . . A . TG . . . . . T G TAT A C . T . . . . AAA . . . . TC A . . A . T . . . A . . . T GC . A A A . C . . G . T . . . . . . . GT T A . T C TAAA G . . A A . . . . A . C . . A . TTA
blockSeqs : . TTT GT . . . . . . A . A . . T . T . . . . . . . . . . . . T . . T G . . . . A . . CG . T . CA . . . . . . . AATGTATTGGCTTGA . . C . . . . . C . C . A . A . . . AA . . . . . . . . . . . . A . . . . . . . . . . . G . . . G . . G . . . . G T G . T TATG . G CT . G A A . . . . A . . . A T . G . . . . . . . . . T AACGG . T . . . . . . T T . T . T . . . . . . CTTA G . . . . . . C . A . . . . . . T . . . A A . . . . . . . . . . . AG A . . A . . . . . . . A . T . . . . . . C . . . . . T . G . . . C . . . G . . . . . A .
blockSeqs : . A . . T . C . . . . . . . . . . . . C . . T G . . . . A . . TA . . . C . . . . . . . GGTTGAATATTCTGA . . . . . . . . C . A . . . . . . . CT . . . . . . . . . C TAT . . . . . C T .
blockSeqs : . T . . . . . . . . . . . . . . . . . . . . . A . . TG . . . C . . . . . . . ATTTGT . . . . . . . . A . .
blockSeqs : .
blockSeqCons : TGTT** GT****** ** ** ****** A******* T****** TC *** ****** **** T* **** ** *** A***** TG****** ****** ** AAATGTATTGGCTTGTGN****************************** T* *** **** **** ** N** ** C*** *** *** AT** T** **** **** ** A** AT* A* A* *** TCT*** A* G*** TATG** TCT****** A*** GA** A** T***** AACGG********************************* ** T** T***** T*** T** T** TG* A** T* AAA*** TN** A* A** ***** T* A* TAAA**** A********
originalCons : NGCGCACCGCTG--T-GGTTGCT----C-AATAA-G--T-ATTT-AC--GTNACC------ATTACGA------GTA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTA---AAAT-GT------------A--T-G-------GC-TTG-----G-TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAATATTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-TT-ATGA-TGTT-ATCT-AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTG-TGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAA-A-AATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----NTTTTAGATT-TAC-TTGTAAATAATATTTTTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGACA-GGAAATA-TCGAGTAGA-TTCA-GTT-AAAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATAA-CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCAGCAAAAAA--CAGA--TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACT---A-----ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
finalCons : NGCGCACCGCTGTT--GGTGT------C-AATAA-G--T-ATT--AC--GTNACC------ATTACA-------GTA-GCAT-CT------ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-TA-----CA--T-TCTG------TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTA-A--AAT-GCG-AAATA-TTAAAATGTATTGGCTTGTGN------------------------------TTGGAT-TTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAAAT--GTTAAT-A-TAT--TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAAT-TTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA-T---TGA-TGTTTCT---AATCAG-TATGC-G-GTA-TA-CGCTGAT--CCAGAGTG---CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AATA-GGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGATATG--TG-TGAGAATTCT------GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCGA---TAAGATGG-TTTTAAAATGAAAA---TA-AC-AATACTTAAGAAAAGA--ATAAATACTTT-TCA--TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACTT-TCAA--AATGT-CTGA-TAGTAAA-G---GT---TTTGG--TT-ATAT-----TGAGTTAACGG---------------------------------TG--TGTTT--AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGTT-----TTTTAGAT---AC-TTGTAAATAATAT--TTTTGAACAGAATTTTT-AACATA-ACA--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAAT--TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGACG-TTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCATT-C-AAAA-T---GTAAATA-TAT--GTA--ATG-TGCACCATTT---AATAT-TCATTT----AGAGAA----------TG-TGCAAA---AAAT-TTC-ATCG-TGACA-GGAAATTN--GAGTAGA-TTCA-GTTA-AAATTTGT-CGCTTTT--T---TTAG-AC-AAT-CT---A-CGGA---GT-CAAC-ACCGAATGTCACAC-CGT-GCCGTAAATGTAATA--CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAA-----CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGTG-CATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAA-CAATTAC-AAAAT-TCCAGCAAAAAATAAA----TGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--GACTA--------ATT-TGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Alignments
lowQualScore : 22222 11 444444444444444444444444444 1111111 111 1111 333333 1111 1 2222 111 111111 11111111 111111 1 22222222 1111111 6666666666666666666666666666666666 11 111 1111 1111 11 11111 2222 111 111 222 1111 1111 11 1111 11111 11 11 444444 222222222 1111 1111 1111 22 11111111 22222 111 1111 2 111 111 111 1 22 2 1 11 1 1 111 333333333333 11 111 11 11 1 111 111 11 111111 88888888888888888888888888888888888888 11 111 11 111 2222222 22 1111 222 1 11 2222222 3333333333 22 111 11 22 11 1111 11111 2 111 111111 111 111 11 1111 3333333333 333 1111 111111 1 1 1 11111 111 1111 111 55555 1 11 111 11 22222 1 1111 1111 22 11 222222 111111 111 111 1 2222 1 1 1 2222 1 222 1 11 1 11 1 2222 1 1 1 1 1 1 1 1 1 222 1 1 1 1 222 11 11 2222 2222 11 4444 22222222 5555555555 1 11 22 1 33 2222222 1 1 777777777777777777 11
lowQualScore : 8 6 11111 6 6 99999 55 99 555555555555555555555555555 6 6 4444444 5 66 000 5 5 5 77 2222 5 5 5 555555 2222 1 55 5 0 5555 6 1 5 77 777 5 333333 77 5 22222222 666666 2 5 22222222 5 66 77 5 5 1 8888888 1 5 5 5555555555555555555555555555555555 77 000 0 6 2222 2222 5 5 77 888 55 22222 6 2 6 1111 6 111 111 8888 8 8 666 8 7777 7777 99 7777 33333 8 8 88 8 11 8 8 0 0 1 9 333333 8 222222222 8 8 0 777 7777 1111 2222 0 0 8 0 0 0 22 3 6 6 6 6 1 1 77 6 1 11111111 2 3 6 33333 6 88 000 1 6 4444 0 8 1 0 444 8 8 0 8 88 0 3 3 1 8 666 777 1 0 33 0 0 11 2 0 0 1 0 5 111 3 111111111111 33 555 11 33 0 8 444 444 11 8 666666 88888888888888888888888888888888888888 11 555 8 11 8 8 444 0 88 5555555 8 77 2222 3 0 111 1 3 8 8 8 11 8 0 6666666 7777777777 11 111 8 11 8 8 8 8 00 8 1 11 8 8 8 8 8 5555 8 888 9 00000 0 777 7 111111 666 99 444 8 99 7777 5555555555 8 666 0 8 8 8 8 5555 8 1 6 8 8 88 0 8 8 0 999999 0 0 0 88888 444 8 8 6 8888 88 0 9999 1 1 0 8 444 8 11111 3 8 1 8 0 8 0 0 0 8 11 888 33 44444 88 6 8 88 999 4444 8 8 3333 00 11 333333 8 888888 444 444 0 3 4444 1 1 5 5 5 4444 5 1 000 5 77 1 5 88 5 1 4444 5 1 1 5 5 1 5 5 5 5 5 5 000 5 5 5 5 111 88 77 6 2222 8888 6 33 3 0000 3 11111111 0 6 1 8888888888 7 5 88 00 3 11 3333333 2 7 6 7 3 6 666666666666666666 7 88
lowQualScore : . . ..... . . ..... .. .. ........................... . . ....... . .. ... . . . .. .... . . . ...... .... . .. . . .... . . . .. ... . ...... .. . ........ ...... . . ........ . .. .. . . . ....... . . . .................................. .. ... . . .... .... . . .. ... .. ..... . . . .... . ... ... .... . . ... . .... .... .. .... ..... . . .. . .. . . . . . . ...... . ......... . . . ... .... .... .... . . . . . . .. . . . . . . . .. . . ........ . . . ..... . .. ... . . .... . . . . ... . . . . .. . . . . . ... ... . . .. . . .. . . . . . . ... . ............ .. ... .. .. . . ... ... .. . ...... ...................................... .. ... . .. . . ... . .. ....... . .. .... . . ... . . . . . .. . . ....... .......... .. ... . .. . . . . .. . . .. . . . . . .... . ... . ..... . ... . ...... ... .. ... . .. .... .......... . ... . . . . . .... . . . . . .. . . . . ...... . . . ..... ... . . . .... .. . .... . . . . ... . ..... . . . . . . . . . . .. ... .. ..... .. . . .. ... .... . . .... .. .. ...... . ...... ... ... . . .... . . . . . .... . . ... . .. . . .. . . .... . . . . . . . . . . . . ... . . . . ... .. .. . .... .... . .. . .... . ........ . . . .......... . . .. .. . .. ....... . . . . . . .................. . ..
lowQualScore : 2 7 88888 7 7 33333 88 22 555555555555555555555555555 7 7 3333333 7 77 000 7 7 7 99 1111 7 7 7 777777 1111 4 99 7 1 7777 6 7 7 99 999 7 111111 99 7 33333333 444444 1 7 00000000 7 99 99 7 7 4 6666666 4 7 7 4444444444444444444444444444444444 77 000 1 6 1111 1111 7 7 99 999 77 99999 7 5 7 8888 7 777 777 0000 0 0 666 0 0000 0000 00 0000 22222 0 0 66 0 22 0 0 8 8 0 0 000000 0 666666666 0 0 8 222 4444 4444 2222 8 6 0 8 8 8 55 7 7 7 7 7 7 7 77 7 7 00000000 5 2 7 33333 7 22 222 0 7 8888 4 0 0 8 000 0 0 8 0 88 8 8 2 0 0 888 555 0 0 88 0 0 00 5 8 2 0 2 5 000 2 222222222222 88 000 00 22 0 0 000 000 00 0 000000 66666666666666666666666666666666666666 00 222 0 00 0 0 000 8 88 2222222 0 00 2222 8 8 666 0 6 0 0 0 00 0 8 0000000 8888888888 22 888 0 00 0 0 0 0 88 0 4 00 0 0 0 0 0 2222 0 666 2 55555 0 555 0 444444 888 44 000 0 22 0000 0000000000 0 000 8 0 0 0 0 2222 0 0 0 0 0 88 8 0 0 8 000000 0 0 0 55555 000 0 0 4 2222 88 8 8888 0 0 8 0 222 0 00000 2 0 0 0 8 0 8 8 6 0 00 000 22 44444 88 0 0 88 444 8888 0 0 0000 66 00 000000 0 222222 000 000 8 3 5555 0 0 5 0 0 0000 5 0 555 5 55 0 5 55 5 0 0000 5 0 0 5 5 0 0 5 0 5 5 0 555 5 0 0 5 000 55 55 7 7777 3333 5 88 2 5555 2 00000000 2 7 0 3333333333 3 0 55 77 3 77 7777777 0 3 7 3 3 7 000000000000000000 3 33
consensus : NGCGCACCGCT-GTTGGT--G--TC-AATAA-G--T--ATT--AC--GT-ACC------ATTAC--G-------G-TA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTAA--AAT-GCG-AAATA-TTA---AAAT-GT-AT----TG-GC-T-----------TG--TGT-----TCGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAAT-TTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA--T---TGA-TGT---T-TC--TAATC-AG-TATG-CGGTA-TA-CGCTGA--TCCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AAT-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAA---ATA-AC-AATACTTAAG-AAAA-GAATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACT-T-TCAA--AATG-TCTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAG-AT-TA--C-TTGTAAATAATA--TTTTTGAACAGAATTTTT-AACATA-AC-A--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCA-TTCAAAAAT---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AA-TATTCATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGAC-AGGAA--A-T-TCGAGTAGA-TTCA-GTT-AAAATTTG-T-CGCTTTT--T---TTAG-AC-AA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCAC-AC-CGT-GCCGTAAATGTAAT-A--CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAAAAC--CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTAGACAATTAC-AAAAT-TCCA-GCAAAAAAT---AAATGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
Reference ( family-2259 ) : NGCGCACCGCT-GTTGGT--G--TC-AATAA-G--T--ATT--AC--GTNACC------ATTAC--A-------G-TA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ACT-AT-A------CG----AAAG-TT-ATAT-ATC----ATNTGTGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------TTTCGNAT-AT---CA---A-ATAA--ATCTTTTAA--AAT-GCG-AAATA-TTA---AAAT-GT-AT----TG-GC-T-----------TG--TGN-----TTGGA-TTTT---TTACCG----TAAAT----A-T-T--GCN--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AAAAC----AAA--ATTTTGCA-GAA-TAAT-TTA-GATTTTGATGT-T-GATAATGTACATAATTAAAAA--T---TGA-TGT---T-TC--TAATC-AG-TATG-CGGTA-TA-CGCTGA--TCCAGAGT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGTGGTGGAA-AAT-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATT-CT-----GCAA-TA-TTTATT--NAAAANTTGA-ATTAATATTTCG---ATAAGATGG-TTTTAAAATGAAA---ATA-AC-AATACTTAAG-AAAA-GAATAAATACTTT-TC-A-TCATAAC---GTNGC-TGAT--ATGTGG-GTTATTCA-TA-NCGGTTATNGGTANTAAGATTTG-T-GTGTCACA-AAC-G-TT--AAAAGTT--ACACT-T-TCAA--AATG-TCTGA-TAGTAAA-G---GT---TTTGG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAG-A--TA--C-TTGTAAATAATA--TTTTTGAACAGAATTTTT-AACATA-AC-A--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCT-AT-GTGTCCACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCA-CAGATAA--T-TACG-ATATTCATTG-AGTCAAATG-TCA-TTC-AAAAT---GTAAATA-TAT--GT-A-ATG-TGCACCATTT---AA-TATTCATTT----AGAGAA----------TG-TGCAA---AAAAT-TTC-ATCG-TGAC-AGGAA--A-T-TNGAGTAGA-TTCA-GTT-AAAATTTG-T-CGCTTTT--T---TTAG-AC-AA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCAC-AC-CGT-GCCGTAAATGTAAT-A--CGTTGCTTGAAAATGAA-TAA--CTAT-CTTAA-----CAATCGTCCAT-AAAGCAATTCCATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTT--TTTAAT-TCAAAATAT-AT-TGCACT-CTA-ACAATTAC-AAAAT-TCCA-GCAAAAAAT---AAATGTC-AAC-ACGTT--A-TGTCACCAGACG--TCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATA-TCGACCTTTAAAAAAAACNAAAACAACTNACTATTGCTGTGATGGCAATTAAACGACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATANTTCGCATTCAAATAAACTCGANTGAAAGTATTATAGGCTGTATTNGGAGATACAATAGTACAANTGTATATATNTTCATATTGTTAAGTAAAACGTCNGTATTTACAAAGAGGTCCAGGGCAAAATGCCGGCATATGATAGCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAACAAAAAAAGAAAAAAAAACCAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAAC-A--GAAAA----AACCCACCCCAAG--CCTCTGCA--TTATGACAGTNGG-T-C-GAGAACCACTACCCAATTNCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACTTAAGCATAAACGT-AAA-CTTTGATA--GTTCTATAGCAATG---TA--GGAAAATGAAAAGCGGACCTAATACA-TGCAGATCCTTTGAGGGATCCTAACATGTGA----GA----------TGTTTTTATGCAGT--ATATAC
gi|1 : GCGCACTGCG-GTTGCTTCG--TC-AATAA-GGTT--ATTTCAC--GTTACTTACTCAATTAC--GATTTGTTG-TATGCATAC--TTAAGACGCATGCTCTTTGTGCATGAATA-AAG--C-GA--GT----T-ACT-ATTAT-----CGGTTTAAAGATTGATAT-ATCTTCTATATGTCG-CGGGTTAATGGTTT-T--GACGCA--T-TC--TAAATTTCTGCGATATTTTCGCAT-AT---CA---ACACTA--ATCTTTTAATAAATCGCG-AAA-A-TTACTTAAAT-GT-GTAATCTGAGC-TATGAATACTCGCG--TGTAGGCATTGAAATTTTAAGTCACCGATTGTAAATTATGA-T-TAAGCTGTTGTTAAGATC----GGTAAC-AACAGCG-TCACATTTTACAGCTACATTATAACCAAA-AAAGTTAATTA-TA-TATTTCTTAGAA-TTTACTTCTGATTAGCACCAAAAAC----ACATTATCGAGCA-GAA-TAATATTACGATGGTGATGT-T-GATAATGTACATAATTAAAAAATTA--TGA-TGT---T-AT--CAATC-AG-TATG-CAGTAATAACGCTGA--TTCAGAGTTG--CAAGATGG-GAGGTGTAGATCAACCTTAATGT-GTAGAA-AAT-AGGCCATCTCCA-TG-TCACTTTTTGTAGG-TATA-TT---------------AGAATT-CTG----GCAA-TA-TTTATT--CAAAATTTGG-ATTAATATTTCGTTTATAAGATGGTTTTTAAAATG-AA---ATA-AC-AATACTTAAG-AAAA-GAATAAA-ACTTT-TTAA-TCAATAC---GTGGCTTGAT--ATGTGGAGTTATTCA-TA-TCGGTTAT-GGTATTAATA-TTG-TGGTGTCAC---AC-G-TT--AAAAGTT--ACACT-T-TCAA--AATG-TCTGA-TAGTAAA-G---GT---TTTGG--TT-ATAATT---TGAGTT---------A--ATG--------------------G--TGTATGTTAC-AATTTA--AA-GG-AAT---TTTAGAAAAATAGG------TTTTTAG-AT-TATTT-TTGTAAATAATA---TTTTGAACAGAATTTTA-AGCAAATAC-A--TGTA-GTT-------TATAGTCA--A-C----GTT-ACAATAACT-TGTAA-TG--TATTATCCT-AT-GTGT-CACA-GTGACGA--TTTGAC-GTTCA-AA-A-CGTCAGCAGATAA--T-TACGTATATTCATTGAAATCAAATG-TCA-TTC-AAAAT---GT-AATA-TAT--GT---ATA-T-CACCATTA---AA-TATCAATTT----ACAGAA----------TGTTGCAAT--CAAAT-TTC-ATCG-TGAC-GAAAAATA-T-TTGAGT-GA-TTCA-GTT--AAATCTG-T-CGCTTTT--T---TAAGAAC-AA-TCT---AGCGGA---GTGCAACAACTGAATGTCAC-AC-CGTGGCCGTAAATGTAAT-AAGCGTTGCTTGAAAATG-A-TAA--CTAT-CTTAAAACG-CAATCATCCATAAAAGCAATTCCATTAAGCACTAAATTAAGACAACTAAAGATTTTTCTTAAATTGT-GCATGTCTTGAAAAAG--ATTTTTTCTTTAAT-TCAAAATATAAT-TGCACTCCTAGACAATTACAAAAAT-TCCAGGAAAAAAATCAGAATTGTCTAACAACGTT--A-TGTC-CAAGACG--TCAAA------AAA-GA--G---ACTTTAAA---TTTGACGTTAAGGTGAATATGTACTGATACTTACATTTCGATACACGTATGTTAGATTGAAATA-TCGACCTTTAAAAAAAACAAAAACAACTAACTATTACTGTGATAGCAATTAAACGACAATTAT-TCA----ATATGATATTCAAATTGAAA-TTTAAAATAAT---CATTCAAATAAACT--AATG-AAGTAT--TAGACTGTATTTGGAGATACAATAGTAC-ATTGTATATATTTTCAT-TTGTTAAG-AAAACGTTAGTATTTACAAAGAGATCCAGAGC-AAATGTCGGCATATGATAGCTA-CTGATCG---TA-TGAATAAGTAAATACTTATTATTTTAAA-AAGAA-TGCAACAAACAAAAAAAGAAAAAAAAACCAAAT--AAAAAACAAAC--ACACGAAAATAAAACAAACAAAAAAGGC------GGGGGGGGGAACAAAAAC-A--GAAAA----CACCCA--CCAAG--CCTCTGCA---TATGACAGTGGA-TCC-GAGAACCACTACCCAATGCCAG----------GTACTCTATACAACAATGTGAATCTTTGGTTCAGGAAGAGAAATTATGAATACT--AGCATAAACGT--AA-CTTTGATAT-GTTCTATAGTAATG---TA--GGAAAAT-AAAAGCGGACCTAATACA-TGCAGATCCTTTGAGAGATCCTAACATGT-A----GA----------TGTTTTTATGCAGT--ATATAC
gi|10 : gtca-TTAA--AATG-TCCGA-TAGTAAA-G---GT---TTTGGGTTT-ATA--T---TGAGTT---------ATGACG--------------------GTTTG--TGTT-TAAA-TTA--AATAG-GAT---TTTAG-AAAATAAGC-----ATTTTAT-AT-TA--C-TTGTAAACGA-A---TTTTGAAAAAAACTTTTGGATATG-A--A--T-TA-GTT-------TATAGTCG--A-A----GTT-ACAATGG-TATGCAA-TG--TA-TA-CCT-AT-GTGT-CACA-GTGACGA--TTTGAC-GTTCA-AACA-CCTCA-CAGATAA--A-TACG-ATATTCTTTG-
gi|11 : CCTCAAAGCCCTCCGCA--A-ATGATAGTGGG-T-CCGAGCATCACTACCCAATTTCAGATACAAACTTGTACTCTA-CAACAAATGTAAATCTTTGTTTTA
gi|11 : cACAAATGT-AAATCTTTGTTT--TATCCATATCATTGACATAACGGAAAATGAAA-GAGAACCT--TATA-T--AGATCCTTTGAGGGACTCTAACATATAAACTTGATTTAAAAACGTATGTCTATGCAGT--ATtccatatcattgacataacggaaaatgaaagagaaccttatatagatcctttgagggactctaacatataaacttgatttaaaaacgtatgtctatgcagtat
gi|12 : ccctcaaagccctccgcaaatgatagtgggtccgagcatcactacccaatttcagatacaaacttgtactctacaGCGCAC-GCTAGTTGGT--AGCTCGAATAAAG--T--ATTT-ATCAGTTACC-------TTACGAA-------G-TA-GCAT-CACT----ACGC-TGTCTTC---ACATGAATA-AAAA-C-ACCATT----T-ACT-AT-AT-----CG----ATAA-TT-ATATCACCAA--ATAGATGA-CGG--TAAT---TTGTGAG---CG--TGTC--TA----TCCA------TATCTGATGATGGAC----A-ATAATCATCTTT
gi|13 : aacgtcG-CTGTA-GA-CGCGGA--CCCAGAAT-G--CA---------GGTGTAGATAAACCTTAACGTG-TGGAA-ATT-AGGCCATGTCCA-CG-ATACATTTCGTAGG-TACA-TTTGGA-TT-TTT-GTGAG----------------------CATC--TAAACCTTGA-ATTGTTATTTCG-----AAG-TGG-TTTTGATATGATA---ATA-AC-TCTACTTATC-AAAACGAAT--GCACTAT-TC-A-T
gi|14 : -TGTT-TT---ATATGAATA-AAAA-C-AC--TT----T-ACT-AT-AAGCCTACA----AAAG-TT-ACAT-ATC----AT-TATGA-CGG--TAAT---TT-T--A---CA--T-TC--TG----TCCA------CTGTG-AT-AT---CAATGA-ATAC--ATCTTTTAA--AGT-GCG-AAATA-TTA-----------AT----T---------------------TGT-----TCGGA--TTT---TTA-CG----TAAAT----A-T-T--GCA--TGTTAAGACC----GG
gi|15 : AATAT-ATATGCCAT-CTC-ATGTTTAC-AAAAT-TCTA-ACAGAAAGT---AAATATC-AAC-AGGTTGCA-TGT------ATG--TCACAGTTCTGAAA-GA--GACCACT---AATATTCTGTCGTTACGGCGAAGGTGTACTCATACGCACATTCAAACACA
gi|16 : ttttcaatttgatgtgcatataatATT-TAT--GT-A-ATG-TGCACAGTTT---AAATAT-CATTT----ACACAA----------TG-TGCAA---A---T-TTC-ATTG-CGAC-AGAAA--A-T-TCAAGTTGG-CTCA-GTT-AAAATTCG-T-CGGTTGT--T---
gi|17 : attcatgccGGGGGGGGGGGGGGAGAAAAAAAC-ACCGAAAATAATAACCCATCCCAAA--CC-CTACAATTCATGAC--TT---T-A-GAAAAACACTA
gi|2 : ggGCGCAGCG-T-GT-GGT--G--TC-AATAA-G--T--ATT--AC--GTAACC------ATTAC--G-------G-TA-GCAT-C--T----ACGC-TGTTCTT---ACATGAATA-AAAA-C-AC--TT----T-ATT-AT-A------CG----AAAAATT-TTAT-ATCC---ACTGGTGATCGG--TAAT---TT-T--A---CA--T-TCGTTA----TCCA------TTTTGTAT--T---CA---A-GTAA--ATCTTG-AA--AAT-GCG-AAATACTTA---AAAT-GT-AT-----G-GCAT-----------TG--AG------TTGGA-TTTT---TTACCG----TAAA-----A-T-T--GCG--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA-T-TTTCTTAAAA-TTAA----TGAT----AC--AACAC----AAA--A-TTTGCA-GAA-GAAT-TTA-GAGTTTGATGTGT-GATAATGTACATAATTTAAAA--TTTATGA-TGTCGAT-CT--TAATC-AG-TATGCCAGTA-TA-CGCTGATGTCCAGAGT-G--CAAGATTGTGAG--GTAGATCAACCTTAACGTGGTGGGACAATAAGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGTGGCGAGAA-T-CT-----GCAACTA-TTTATT--AAAAATTTGAGATTAAGATTTCG---ATAAG-TGG-TTTTAAAATGAAAAAGATACAC-AATACTTAAG-AAA---GATAGATATTTT-TT-A-TCATACT---GTCGC-TGATTCATGTGGCATTATTCA-TA-GCGGTTATCGAAATTAAGATTTG-T-GTG-CAC--AAC-G-----AAAAGTT--ACACTGG-TCAA--AATGTTCTGA-TTTTAAA-GCGCGT---TCTTG--TT-ATA--T---TGAGTT---------A--ACG--------------------G--TG--TGTT-T-AA-TTA--AA-GGTAAT---TTTAG--AAATAGGT-----TTTTTAGAA--TA--C-TTGTAAATAATATTTTTTTGAACAGAA--TTT-AACATA-AC-A--TGTA-GTT-------TATAGTCA--ACC----GTTAACAATAA-T-TGTAA-TG--TA-TA-CCG-AT-GCGTCCACA-GTGATAA--TTTGACGGTTCA-AA-A-CGTCA-CAGATCA--T-TACG-ATATTCATGG-AGTTCAATGCTCA-TTCAAAAAT---GTAAATA-TATTCGT-A-ATC-TGCACCATTT---AA-AATTCATTT----AGAGAA----------TG-TGCAAATCAAAAT-CTCGATCG-TGACAAGGAA--A-TATTGAGTAGACTTCA-GTT-AGAATTTGTT-CGC--TT--T---TTAG-AC-AATTCT---A-CGGA---GT-CAAC-ACCGAATGTCAC-ACGCGT-GCCGTAAATGTAATAA--CGTTGCTTGAAAAGGAA-TAAACTTATGCTTAAAACACCAATCGTCCAT-AAAGCAATTCTATTAA-CAC-AAATTAAGACAACTAAAGATTTTTCTTAAATAGTGGCATGTCTTGAAAAAG--ATTTTT--CTTAATGTCAAAATATCAT-CGCACT-CTA-ACAATTAC-AAAATGTCCA-GCAAAAAAC---AGATGTC-AAC-ACTTT--A-TGTCACCAGACG--TCAAA------AAATGACGA---ACT---AA---TTTGACGTTACGGTGAATATGTACTGGTACTTACATTTAAATACACGTATGTTAGGATGAAATACTCGACTTTT----AAAACTAAAACAACTTACTATTGTTGTGATGACAATT-AAC-ACAATTATCTCAAATGACATGATATTCAAATTGAAATTTTAAAATATTTCGTATTCAAAT-AACTCGATTGAAAGTATTATAGGCTG-ATTGGAAGATACA----TACAAGTATATATATATTCATATTGTTAAGTAAAACGTCTATATTTACAAA-AGGTCCAAGGCAAAATGCC-GCAT-TAAT-GCTAGCTGATCGGGATATTGAATAAGTAAATACTTATTATTTTAAAGAAGAAGTGCAACAAAC-AAAAAAGAAAAAAA---CAAATAAAAAAAACAAACCGACACGAAAATGAAACAAACAAAAAAGGCGGGGGGGGGGGGGGGGACAAAAACAA--GAAAA----AACGCACCCCAAG--CCTCTGCAT-TTATGACAGTTGGAT-C-GAGAACCACTA-CCAATTGCAG----------GTACTCTATCAAACAATGTGAATCTTTGGTTCA-GAAAAGAAATTATGAATACTTAAGCATAAACGTAAAA-CTTTGATAGGGTTCTATAGCAATG---TA--GGAAAATAAAAAGCGGA-CTAATACATTGCAGATCCTTTGAGGGATCCTAACATGTGA----AA----------TG-TTTTATGGAGTTAGTATAC
gi|3 : tTAA--ATCTTTTAA--AAT-GCG-AAATG-TTA---AA-T-GT-AT----TG-GC-T-----------TG----A-----CTGGA-TTTT---T-AC-G----TAAAT----A-T-T--GCC--TGT--AGATC----GGTAAC-AACAGCG-TCACAC---ACA-CT---TTA---CCAAA-AT-GTTAAT-A-TA---TTTCTTAAAA-TTAA----TGAT----ACT-AAGAC----AAA--ATTTTGCA-GAA-TAAT-TTT-GATTTTGATGT-T-GATAATGTACATTATT-AAAA--TGA-TGA-TGT---TATC--TAATC-AG-TATG-CGGTA-TA-CGCTGA--TTCAAAAT-G--CAAGATTG-GAGGTGTAGATCAACCTTAACGT-GTAGAA-AAT-AGGCCATCTCCA-TG-ATACGTTTTGTAGG-TACA-TTTGGA-TA-TGT-GTGAGAATT-TT-----GCAA-TA-TTTAAT--AAAAAAATGA-ATTAATATTTCG---ACAAG-TGG-TTTTAAAAGGAAA---ATA-AC-AATACTTAAGAAAAA-GAATAAATA-TTT-TC-ATTCATAACAGTGCTGT-TGATA-ATGTGA-GTTATTCA-TATTCGAGTATGGGTAATAAGATTTGTT-GTGTCACATAACTG-CTCCAAAAGTTAAACACT-TATCAAATAATG--CTGATTAGTAAAGG---GTTGATTTGG--TT-ATC--TCCCTGAGCTCCCCAAATAA--ACGGATAAAAAAAGACTATGACTG--TG--TGTT-A-AA-TTAAGAA-AG-GATAGGTTT---AAGATATGTAGCCGATTTTAG-ATTTA--CTTTGTAAAAACTA--TTTTTGAAACGAA-TTTT-AACATA-AC-ACTTGTATGTTAAAAAAATATAGTCACTACCTGAAGTT-ACAATAA-T-TGCAATTGATTA-TA-CCT-ATGGTGT-CACA-GTGATTAACTTTGAC-TTTCA-AA-A-CGTCA-CAGATAAATT-TACG-ATATTCAT----GTCAAAAA-T---TTCAAAAATTGGGTAAATA------GTAA-ATA-TGCACCATTTTCAAA-TA-TCATTTTACAAGACAATTGCCATAAGTG-TACAA---AAAATATTC-ATCGTTGAC-AGGAA--ATT-TTGAGTAGA-TTCAGGTTAAAAATTTG-T-CGTTTTT--TTTATTAG-ACAAA-TCT---A-CGGA---GT-CAAC-ACCGAATGTCAC-AT-CGT-GCCGTGAATATAAT-A--CGTTGCTTGAAAATGAA-TAA--CTAT-------------------CAT-AAAGCAATTCCATTAA-CAC-AAATTAAAACAACTAAAGATTTTTCGTAAA-TGT-GCATGTCTTGAAAAAG--ATTTTT--atgtactatt
gi|4 : TAAA-G---TT---CTTTG--TCGATG--T---AGGGTTG--------A--ATA--------------------G--TT--AGTG-T-AA-TTA--AA-GG-AAT---TTTAG-AAAATAGGT-----TTTTTAG-A--TA--C-TTGTAAAT-ATA--TTTTT-AACTGAATTTTT-AACATA-ACAA--TGTA-G-T-------TATAGTC---AC------TTA--AATAT-G-TGTAA-TG--TA-TA-CCTCAT-GTG-CCACACGTGATAA--TTTGAC-GTTCACAA-ATCGTCA-CAGATAG--TCTACG-ATATTCATTG-AGTC-AATG-TCATTTC-AAAAT---GTGAATACTAT--GT-ACATGATGCACCATTT---AA-TA--CATTT----AGAGAA----------TG-TGCAAATCAAAAT-TTC-ATCG-TGAC-AGGAA--T-T-AGGAGTAGA-TTCA-GTT-AAA--TTG-TCCGCTTTTAAC---TTAG-AC-AC-TTTCTAA-CGAATTTGT-CAAC-AC---ATGT-ACAAA-CG----CGCGAATGT--T---------CTTGGAAGAAAATTAA--CTAT-CTTAA-----CAATGTTCAAT-ATAGCATTTCCACCTA-C----AATTAAGACA---AGAGATTT---CTAAATTGC-G------------AAG--ATTTCT------AT----AAATAT------CAC----AGACAATTAC-AAAA--TCCA-G-----AAT-----ACTTC-AAC-ACGTT--ACTGTCA-CAGACGGTTCAAA------AAA-GA--G---ACT---AA---TTTGACGTTACGGT-AATATGTATCGGT-CTTACATTTAAATACACGTATGTCTAGATGAATTA-c
gi|5 : tGCGCACGGCT--TTGGT--G--TC-AATA--G--T--ATT--AC--GTA--C------ATTAC--A-------GGTA-GCAT-C--T----ACGC-TTGTCTT---ACATGAATAGAAAA-CGAC--TT----T-ATT-AT-AGC----CG----AAAA-TT-AT-T-ATC----ATCTGTGA-CGG--TAATTG-TT-T--A---CATGT-TA--CG----TCCA------TTTTGAAT-AT---C----A-ATAC--ATCTTTTAA--AAT-GCGAAAATA-T-----AAATGGTGAT----TG-GC-T-----------TGCATGC-----TTGGA-TTTG---GTCTCG----TAAAT----ATT-T--GCC--TG----AAT-------TAAC-AA-AGCT-CCA-----------T---TGA---CCAAATAT--TTAAT-A-TAGT-GTTCTTAAAA-TGAA----TGAT----AC--ACAAC----AA------TTGCA-GAAGTAA---TA-GATT----TGT-T-GA-AATGTCT---ATTGAAAA--T---TGAGTAT---T-TCAGTAATCGAG-T-------TA-----G-TGA--T----AGT-AATCAAGATTG-GAGGTGT--GTCA--CT--ACGT--T---A-AAT-G---CATCT--A-TGCAT-CGTTTTG--G---ACA-TTTGGA-TA-T-T-AT--GAATTGCTTTTAAACGA-TA-GTTAATGAAAAAAATAGA-AGTAATGTT
gi|6 : agacgtcGCGCACCGCT-GTTGGTT-G--TC-AATAA-G--TTAGTT--AC--GT-ACC------ATTAC--A-------G-TA-GGAT-C--T----ACGC-TGT-CTT---ACATGAATA-AAAAAC-AC--TT----TTACT-AT-A------CG----AAAG-T--ATAT-A-C----ATTTGTGA-CG---TA-T---TT-T--A---CA--T-TC--TA----TCCA------TTTTG-AT-AC---CA---A-ATAA--ATCTTTTAA--AAT-GCG-AAATA--TG---AAAT-GT-AT----TG-GC-T-----------TGCCTGT-----TTGGA---TT---TTACCG----TAAAT----A-TGT--GCC--TGT--AGATCGGTGGGTAACAAACAGCGTTCACACCA-ACA-CT---TTA---CCAAC-AA-GTTAAT-AGTA---TTTCGTAAAATTTAA----TGAT----AC--AAAACAACAAAA--ATTTTGCAGGAA-TAA--TTA-GATTT--ATGT-TGGATAATGTACATAATTAAAAAT-T---TGA-TTT---C-TC--TAATC-AGTTATG-C
gi|7 : acgtcgGA---GT-CAAT-ATTAAATGTCAC-GC-CGT-GCCGTAAGTGTAAT-A--CGTAACTTGAAATTTAA-TAA---TAT-CTTAAAAC--TAATCGTCCAT-ACAGGTATTTAATTAG-CAC-AAATTAAAACAACTAAATTTTTTTCTTAAA-TGT-GCATGTATTGAAAAAAGTATTTTC--TTTAAT-TCAAAATG--GT-TGCATT-CTA-GCAATTAG-AAAAT-TGCA-ACAAAAAAT---AAATGCC-AAC-ACGTT--G-TGTCA-CAGACG--T-AAA------AAA-GA--G---ACT---AA---TTTAACGTTACATTGAATATGCACTGGTACa
gi|8 : GCT-GTTGGT--T--TA-AAAGA-G--T--ATT--AC--AT---------------------------TA-GCAT-T--T----ACGT-TGCT-TT---ATATGAATA-AAAA-C-AC--TTAATTT-ACTTAC-A------CT----AAAG-TC-ACAT-ATC----ATTT-TGA-CGG--TCAT---TC-T--A---CA--C-TC--TG----TCCA------TTCCGT-T-AT---C----G-ACAC--GTCTTTT-----AT-----------------AAAT-GT-AT----TA-GG-T-----------TGAATAT-----TCTGA--TAT---TTA-CG----TAAAT----A-T-T--GCA--TGT--AGACA----GGT-GC-GGAAATA-TCGCAA---GCA-C----TTA---CCAAA-CT-GTT
gi|9 : cgtcgtgcagGTGGAA-TAT-AGGCC-TGTCCACTG-ATGCACTT-GTAGAATACAATTCGGAATACTGT-GTGAGAATT-CT-----GAAT-TACCTTATC--CAAATTTTGA-ATTCATA-TTCG---ATAAGATGG-TTTTTGAAAGAAA---ATA-GCTAAT-CTTAGG-AAAA-AGATAAGTACTGTATC----CATAAC---GTACC-TGAT--ATGTTG-ATTATTCAGTA-GC-GTTATAGTTAATGAAA-GTG-T-GTGTCACA-AAC-GTTT--TTAAGTT--ACACT-T-TCAA--Attgaaataacttgaatgata