lowQualScore : 11111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222 11111111111111111111 111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777777777777 1 2222 1111111111111111111111111111111111111 44 1 22 888888888 11 33333 1 1 1 66666666666666666666 11 222 2222222 1 1 1 4 99999999999 22 1 99999999999999 1 2222 333333 666666666666666666666666666666666666 1111111 3333333333333333333333333333 11 1 1 1111 11 1111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888 5 9999 2222222222222222222222222222222222222 33 3 5 33 999999999 6 00 22222 5 55 5 5 22222222222222222222 1 6 44 555 8888888 6 3 6 3 3 6 0 6 55555555555 0 22 7 6 3 7 77777777777777 5 6 8 3333 888888 666666666666666666666666666666666666 8 4 1 0 4 7 66 888 3 0000000 1111111111111111111111111111 1 88888 4 3 2 88 4 8 2 555555 4 333 1 77 2 5555 11 1 22 333 77 7777777777 22 5555555 1 88888888 7777777777 55 1 1 555 55 444444 77777777777 9999999999999999999 3 1 33 555 44 4 7 3
lowQualScore : ..................................................... . .... ..................................... .. . . .. ......... . .. ..... . .. . . .................... . . .. ... ....... . . . . . . . . ........... . .. . . . . .............. . . . .... ...... .................................... . . . . . . .. ... . ....... ............................ . ..... . . . .. . . . ...... . ... . .. . .... .. . .. ... .. .......... .. ....... . ........ .......... .. . . ... .. ...... ........... ................... . . .. ... .. . . .
lowQualScore : 00000000000000000000000000000000000000000000000000000 5 5555 5555555555555555555555555555555555555 00 0 0 00 555555555 0 00 55555 5 55 0 0 77777777777777777777 0 0 33 333 0000000 7 3 7 3 3 0 0 0 00000000000 7 77 3 0 3 0 33333333333333 0 7 3 0000 333333 555555555555555555555555555555555555 3 0 5 5 4 1 11 333 6 8888888 2222222222222222222222222222 9 66666 8 2 0 88 0 0 0 111111 0 555 8 77 1 4444 44 8 55 222 00 3333333333 33 7777777 7 44444444 0000000000 99 6 6 222 55 888888 99999999999 5555555555555555555 6 4 99 444 22 0 3 6
consensus : NNNNNTCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AACAGGACACGATGCTTTGGCACATGTTAACAATCNNTTTNNAT--AATCTGCTCAAGTCCTGAACTG-TGTTTGCACCAGGATTTGAA-TTTTGGNCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACNTTNNNNGTTGAAATGCTNCGGTGCTCTTGTTCAGATCTCA-TATT---------TGTGGTCTTTCAAAAGTCTGTAGAATGTTTCC-TTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAGTGTTA-CTATTCACCGATTCAAATCCAGCTCGTTTAACGTTTTCAGTGTTGTG-ATTTGTTGAAAAGATTTCTTGTTAN---A-GTA-A--NAA-AACTCGCATTGATTTGTAA-TNGCTTTTCCATGCT-C--GCTCGAACACAGCTCAC--------TTCAGAT-A-AAATCATTNT-------AAACAA-TCCTCGTTTGTCCTAATCCTTG--G--TTT-GTC-------CTAG-------------CC-------C--CC-TAGGAAGAACG--AGGATCCNCGTTTGT-CCT-AGG-AGAAA-C---GAGG-ATCC---TCGT-TT-GTACTGA-ATATATG-C-CA--GTACA---AACGGGGAT----------CC--T--C----G-TTT-------CTCCT----------AGGAN-AA-ACGAGGATCCNCGTTT-NTCC------T-----------AGGA-----------------CGATCTGGGATC-GTCC---TGA--ATCCTCGTTTGTCCTG-TGACATA
Reference ( gi|1 ) : AAATGTCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACA-GTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGTTTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTTTCTT-TTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAGTGTCAACTACTCACT-----------AGCTCGCTTAAATTTTTCAGTGCTGTG-ATTTGTTGAAAATATTTCTTGTTAG---A-GCGAA--GAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGCTCCTTGCTCGAACATAGCTCACTTTAAACATTCAAATGA-AAATCATTGT-------AAACTA-TTCTCGCTTGTCCTAATCTTTG--G--CTT-GTC-------CTAG-------------CC-------C--CT-TAGGAAGAATA--AGGATTCGCGTTTGT-CCT-TGG-A-AAA-C---AAAG-ATCC---TTAT-CT-GTACTGA-ATATATG-C-CA--GTACA---AACTGGGAT----------CC--T--T----G-TTT-------CTCCT----------AGGAA-AA-ATGAGGATCCGCATTT-GTCC------T-----------AGGA-----------------CGATCTGGGATC-GTCC---TGA--ATCTTCGTTTGTTCTG-TGACATA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGT-AACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTG-TGTTTGCATTAGGATTTAA--TTTTGGGCCAT-TTCACATATT--------
gi|2 : aaaaAACAGGACATGATGCTTTGGCACA-GTTAACAATCTA---CTAT----TCT---------------------TTGCACCAGGATTTGAA-TTTTGGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATTTCAG-TTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCActacttca
gi|4 : TTATACTTTGGTTGTTGAA-TGCTGCAGTGCTCTT-TTCAGATTTCA--------------TGTG------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCAGagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|15 : TGTTTCAATATTATCTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AAacaaattgataatcacccattttcgccatcattctctaacacactgttaatatgtcgttgattcaatccgccgtttaaagtttcagtgttgtggatttgttgaaaagatttctaattgattcaataaagaaaacgcattgatttgtaactggcttttacatgcttgctcga
gi|2 : tcGTGTTA-CTATTCACTGATTCAAATCCAGCTCGCTTAACGTTTTCAGTGTTGTG-ATTTGTTGAAAATATCTCTTGTTAG------------TAACAACTCACATTGAATTGTAA-TAGCTATTCCATGCTTC--GCTCGAACATAGCTCA---------TTCA---------------T-------AAACTA-TTCTTCTTTGTCCTAAACCTTG--G--TTT-GTC-------CTAG-------------CC-------C----------AGAA-----GGAATCGCGTTTGT-CCT-AGG-A-AAA-C---AAAG-ATCC---TCAT-TT-GTACTGA-ATATATG-C-CA--GTACA---AACTGGGAT----------CC--C--C----G-TTT-------CTTCT----------AGGAA-AA-ATGAGGATCCGCGTTT-GTCCTACATGT-----------AGGACGATCTGGAATCGAGGTCGATCTGGGATC-GTCC---TGA--CTCCTCGTTTGTCCTG-TGACATA
gi|6 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCC-----------AGCTCATTTAATGTTTTCAGTGTTGTG-ATTTGTTGGACAGATTTCTTGTTAC---ATGTACATTAAAGAACTCATATTGATTTGTAA-TTGCTTTTCCATGCTAC--GCTCGAACACAGCTCAC--------TTCAAATTA-AAATCATTAT-------AAACTA-TTCGCGTTTGTTCTAATCCTTt
gi|4 : agactaaattgaccagtgcacattttctcatcattcctctgaacataaattacatgttaaaactaatcgctgattcaaatCGTTTAAAGTTT-CAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATAAA--GAA-AA--CGCATTGATTTGTAACTGGCTTTTACATG---CTTGCTCGA
gi|13 : ttatactttggttgttgaatgctgcagtgctcttttcagatttcatgtgcaaaagtctaaagaatgttactgtggatgttggtaggcatattaaaaaatcttaacagttgattggagaatcagacaaattgataatcacccattttcgccatcattctctaacacactgttaatatgtcgttgattcaatccgcAGATGAGAAATC-TTGTCCTAGGAAAACAAGTCCTCATTT-TACTAATAACTG--GATCTC-GTT-------T-----------------C-------T--CC-TAGGAACAACATGAGGATCCGCGTTTGT--CT-AGG-A-CAT-C---TGAGCATCC---TGAT-C
gi|5 : a-AATTCAGTTT-------ACAATA-TTC--GCTTGTCTTAACCCTTG--G--TTT-ATC-------CTAG-------------CC-------C--CT--AGGAAGAATG--AGGATCCGCGTTTGT-CCT-AGG-A-AAA-----AAGG-ATCT---TCAT-TT-GTACTGA-ATATATG-C-CA--GTACA---AACTGGGAT----------CC--T--C----G-TTT-------CTCCT----------AGGTA-AA-ATGAGGATCAGCGTTT-GTCC------T-----------AG------------------------TGGGATT-ATCC---TGA--ATCCTCATTTGTCCTG-TCACAccgtttgtcctgttatc
gi|9 : aacttaaactcattgatttctcccatgatttttcatcgatACAA-TCCTCGTTTGTCCTAATCCTTG--G--TTT-GTC-------CTAG-------------TC-------C--C--TAGTAATAATG--ATAATCCGCGTTTGT-CCT-AGGAA-AAA-C---AAGG-ATCC---TCAT-TT-GTAATGA-ATATATG-C-CA--GTACA---AACTGGGAT----------CC--T--C----G-TTT-------CTCCT----------AGGAA-AA-AAGAGGATCCGCTTTT-GCCC------T-----------AGGA-----------------CGATCTGGGATC-CTCC---TGA--ATCCTCGTTTGTCCTG-TGAGATAc
gi|7 : atgatttagtttACAA-TCCTTGTTTGTCCTAATCCTTGTTG--TTT-GTC-------CTAG-------------CC-------C--CT--AGGAAGAATG--AGAATCCGCGTTTGT-CCT-AGG-A-AAAAC---AAGG-ATCT---TCAT-TT-GTACT-A-TTATATA-C-CA--GTACA---AACTAAGAT----------CC--G--C----G-TTT-------CTCCT----------AGGAAGAA-ATTAGGATCCGCGTTT-ATCC------T-----------AGGA-----------------CGATCTGGGATT-GTCC---TGA--ATCCTCGTTTGTGCTG-TGACATA
gi|8 : tataattcaagttttACAA-TCCTTGTTTGTCCTAATCCTTG--G--TTTTGTC-------CTAG-------------CC-------C--C--TAGGAAGAATG--AGAATCCGCGTTTGT-CCT-AGGAA-AAA-C---AAGG-ATCT---TCAT-TT-GTACTGA-TTATATA-C-CA--GTACA---AACTAAGAT----------CC--G--C----G-TTT-------CTCCT----------AGGAA-GA-ATTAGGATCCGCGTTT-ATCC------T-----------A-GA-----------------CGATCTGGGATT-GTCC---TGA--ATCCTCGTTTGTGCTGTTGACATAtat
gi|3 : tataattcagtttACAA-TCCTCGTTCGTCCTAATCCTTG--G--TTT-GTCCTAGCCCCTAGGAAGAATGAGAATCCGCGTTTGT--CG-TAGGAAAAACA--AGGATTCTCATTTGT-ACT---G-A-GAA-CTTTGGAGTATCTCCTTTAG-AT-ATACT-A-GTATATG-T-CA--GTACA---AACTGGGAT----------CC--T--C----G-TTT-------CTCCT----------AGGAA-AA-GTTAGGATCCGTGTTT-GTCC------T-----------AGGA-----------------CGATCCGAGATC-GTTC---TGA--ATCTTCATTTGACCTG-TGATATA
gi|12 : tgacaaaaataaacttatcgatttatttgatgcttctcatcaataattcagtttACAA-TCCTTGTTTGTCCTAATCCTTG--G--TTT-GTT-------CTAG-------------CC-------C--C--TAGGAAGAATA--AAAACCCGTGTTTGT-CCTATGA-A-AAA-T---AAGG-ATTC---TCTT-TT-GTACTGA-GTGGATG-T-CA--GTACG---AAATGGGAT----------CC--T--C----A-TTT-------CTTCT----------AGGAA-tat
gi|14 : taattcagtttA-TCCTTGTTTGTCCTAATCCTTG--G--TTT-GTC-------CTAG-------------CC-------G--C--TAGGATGAATG--AGAAT
gi|10 : gacaaaattaaacacatcgatttctttcatgattttcagtttata--CTT-AGT-------CTAC-------------CC-------CTGCC-TGGGAAGAATG--GGAATCTGCGTTTGT-CCT-AGG-A-AAA-C---AAGG-ATCT---TCAC-TT-GTACTGA-ATATATA-C-CA--GTACA---AACTGAGAT----------CC--T--T----G-TTT-------CTCCT----------AGGAA-AA-ATTAGGATCCGCATTT-GTCC------T-----------AGGA--------------------TTT--------TCC---TGA--ATCCGCGTTTGCCCTG-TGA
gi|2 : cTC-GTC-------CTA-----------------------C--ATGTAGGACAAACG--CGGATCCTCATTTTT-CCT-AGA-AGAAA-C---GGGG-ATCC---CAGT-TT-GTACTGGCATATAT--T-CA--GTACA---AATGAGGAT----------CT--T--T----G-TTT--------TCCT----------AGGAC-AA-ACG-CGATTC-CTTCT-GGGC------T-----------AGGA-----------------CAA
gi|7 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtTC-------CCAG-------------AT-------CGTCC-TAGGATAAACG--CGGATCCTAATTTCTTCCT-AGG-AGAAA-C---GCGG-ATCT---TAGT-TT-GTACTGG--TATATA-A-TA--GTACA---AATGAAGAT----------CC--T--T----G-TTT-------TTCCT----------AGGAC-AA-ACGCGGATTCTCATTC-TTCC------T-----------AGGtctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|5 : tataattcaagttttacaatccttgtttgtcctaatccttgttgtttgtcctagcc-------------CC-------C--AC-TAGGACAAACG--CTGATCCTCATTTTA-CCT-AGG-AGAAA-C---GAGG-ATCC---CAGT-TT-GTACTGGCATATAT--T-CA--GTACA---AATGAAGAT----------CC--T--T-------TT-------TTCCT----------AGGAC-AA-ACGCGGATCCTCATTC-TTCC------T-----------AGGttgtcctgaatcctcgtttgtgctgtgacatatat
gi|10 : aacttaaactcattgatttctcccatgatttttcatcgataattcagtttacaatattcgcttgtcttaacccttggtttatcctagcc--CC-TAGGACAAATG--CGGATCCTAATTTTT-CCT-AGG-AGAAA-C---AAGG-ATCT---CAGT-TT-GTACTGGTATATAT--T-CA--GTACA---AGTGAAGAT----------CC--T--T----G-TTT--------TCCT----------AGGAC-AA-ACGCAGATTCCCATTC-TTCC------C-----------AGGattatcctgaatcctcatttgtcctgtcacac
gi|3 : ccttagtctacccctg--CC-TAGGACAAACA--CGGATCCTAACTTTT-CCT-AGG-AGAAA-C---GAGG-ATCC---CAGT-TT-GTACTGA--CATATA-C-TA--GTATATCTAAAGGAGAT----------AC--T--CCAAAG-TT--------CTC------------AGTAC-AA-ATGAGAATCCTTGTTT-TTCC------T-----------ACGA-----------------CAAACGCGGATT-CTCA---T-----TCTTCattttcctgaatccgcgtttgccctgtga
gi|8 : tgacaaaaataaacttatcgatttatttgatgcttctcatcaataattcagtttacaatcctcgttcgtcctaatccttggtttgtcctagcccctag-TAGGATAAACG--CGGATCCTAATTCTT-CCT-AGG-AGAAA-C---GCGG-ATCT---TAGT-TT-GTACTGG--TATATAAT-CA--GTACA---AATGAAGAT----------CC--T--T----G-TTT-------TTCCT----------AGGAC-AA-ACGCGGATTCTCATTC-TTCC------T-----------AGGacgatccgagatcgttctgaatcttcatttgacctgtgatatatat
gi|13 : tataattcagtttacaatccttgtttgtcctaatccttggttttgtcctagccGGATC--AGGATGCTCAGATGT-CCT-AGA-C-AAA-C---GCGG-ATCC---TCATGTT-GT-----------TC-C-TA--GGAGA---AAC-GAGAT----------CCAGT--T----A-TT------------------------AGTA-AA-ATGAGGACTTG--TTT--TCC------T-----------AGGA-----------------CAAgacgatctgggattgtcctgaatcctcgtttgtgctgttgacata
gi|9 : aagatgagaaatcGGATCCTCTTTTTT-CCT-AGG-AGAAA-C---GAGG-ATCC---CAGT-TT-GTACTGGCATATAT--T-CA--TTACA---AATGAGGAT----------CC--T--T----G-TTT-------TTCCT----------AGGAC-AA-ACGCGGATTATCATTA-TTAC------T-----------AGG-------------------GA-CTAGGAcgtttgtcctgttatc
gi|7 : atgatttagtttacaatcctcgtttgtcctaatccttggtttgTCGT-CCT-AGG-ATAAA-C---GCGG-ATCC---TAAT-TT----CT--------TC-C-TA--GGAGA---AACGCGGAT----------CT--T--A----G-TTT-------GTACTGGTATATAATAGTAC-AA-ATGAAGATCCTTGTTT-TTCC------T-----------AGGA-----------------CAAACGCGGATT-CTCA---T-----TCTTCgcttttgccctaggacgatctgggatcctcctgaatcctcgtttgtcctgtgagata
gi|13 : tataattcaagttttacaatccttgtttgtcctaatccttgttgtttgtcctagcccctagTTGT-CCT-AGG-A-AAA-C---AAG---TCC---TCAT-TT--TACT-A-ATA--------------------ACTGG-AT----------C---T--C----G-TTT-------CTCCT----------AGGAACAACATGAGGATCCGCGTTT-GT-C------T-----------AGGA-----------------C-ATCTGAG--C-ATCC---TG---ATC-CCGTTTGTCCTG-tctgggattgtcctgaatcctcgtttgtgctgtgacatatat
gi|12 : aagatgagaaatcT-CCT-AGA-AGAAA-T---GAGG-ATCC---C-AT-TTCGTACTGA--CATCCA-CTCA--GTACA---AAAGAGAAT----------CC--T--T----A-TTT-------TTCAT----------AGGAC-AA-ACACGGGTTTTTATTC-TTCC------T-----------AGGtatc
gi|7 : taattcagtttacaatccttgtttgtcctaatccttggtttgttctagcc-ATATATG-T-CACAGCACA---AACGAGGATTCAGGACAATCC--C--A----G-ATC-------GTCCT----------AGGAT-AA-ACGCGGATCCTAATTTCTTCC------T-----------AGGA------------------------GAAAC-G------CGG--ATCTTAGTTTGTACTG-a
gi|13 : tataattcaagttttacaatccttgtttgtcctaatccttgttgtttgtcctagcccctaggaagaatgagaatccgcgtttgtcctaggaaaaacaaggatcttcatttgtactattatatacATGTC-C-TA--G-ACA---AACGCGGAT----------CC--TCAT----G-TTG-------TTCCT----------AGGAG-AA-ACGA-GATCC
gi|8 : aagatgagaaatcttgtcctaggaaaacaagtcctcattttactaataact-C-TA--GGATA---AACGCGGAT----------CC--T--A----A-TTC-------TTCCT----------AGGAG-AA-ACGCGGATCTTAGTTT-GTAC------T-----------GGTA-----------------T-AT----AATCAGTACAAATGAAGATCCTTGTTTTTCCTA-GGACActgagcatcctgatcccgtttgtcctgttatc
gi|12 : tataattcagtttacaatccttgtttgtcctaatccttggttttgtcctagcccctaggaagaatgagaatccgcgttAT----------CC--T--T----GGTTTGTTCTAGCCCCT----------AGGAA-GA-ATAAAAACCCGTGTTT-GTCC------T-----------ATGA-----------------acgatctgggattgtcctgaatcctcgtttgtgctgttgacata
gi|12 : taattcagtttacaatccttgtttgtcctaAC----------CC--G--T----G-TTT-------GTCCT----------ATGAA-AA-ATAAGGATTCTCTTTT-GTAC------TGAGTGGATGTCAGTA-----------------CGAAATGGGATC-CTCaaaataaggattctcttttgtactgagtggatgtcagtacgaaatgggatcctcatttcttctaggaa
gi|10 : taattcagtttacaatccttgtttgtcctaatccttggtttgttctagcccctaggaagaataaaaTCCT----------AGGAC-AA-ATGCGGATCCTAATTT-TTCC------T-----------AGGA-----------------GAAACAAGGATC-atttcttctaggaa
gi|16 : ccttagtctacccctgcctgggaagaatgggaatctgcgtttgtcctaggaaaacaaggatcttcacttgtactgaatatataccagtacaaactga-AA-ATGAG-ATCCGCGTTT-GTGC------T-------------GA-----------------CGATCTGGAATC-GTCC---TGA--ATCCGCGTTTGTTCTG-TGATAttttcctgaatccgcgtttgccctgtga
Alignments
lowQualScore : 1 222 2 1 4444 22 2222 1 2 333333333333333 2222 1 1 1111 22222 9999999999999999 3 111 1 1 111 11 11 1 111 44444444444444444 1 2222222 555555555555555555555555 11 6666666666666666666666666666 1 11111 1 111 111111 22222222222222222
lowQualScore : 5 111 0 5 2222 44 4 2 1111 3 7 3 7 888888888888888 0000 6 3 6 3 1 6 0 7 1111 4 1 33333 7 888 6 0 0 0000000000000000 6 3 0 6 2 3 777 2 0 2 0 8 777 0 8 444 11 8 11 66 3 3 6 3 0 2 777 22222222222222222 2 2 4 0 1 2222222 0 444444444444444444444444 8 3 99 55 4 55 1111111111111111111111111111 5 1 8 33333 7 777 5 5 55 000 1 1 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . .... . . . . ............... .... . . . . . . . . .... . . ..... . ... . . . ................ . . . . . . ... . . . . . ... . . ... .. . .. .. . . . . . . ... ................. . . . . . ....... . ........................ . . .. .. . .. ............................ . . . ..... . ... . . .. ... . . ...... ................. . .
lowQualScore : 5 555 0 0 5555 00 0 5 0000 3 3 7 3 777777777777777 0000 7 3 7 3 0 7 7 3 3333 0 0 77777 3 333 7 7 7 7777777777777777 7 2 0 5 5 2 000 5 0 5 0 0 000 8 0 000 00 0 00 22 2 2 5 2 0 5 555 22222222222222222 5 0 0 0 0 5555555 7 777777777777777777777777 1 0 66 55 0 66 1111111111111111111111111111 3 0 0 88888 8 000 0 0 00 888 0 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACA-GTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT-GCACCAGGATTTGAA-TTTTGGTCCATCTTCGCGTATTTCT-CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-NTTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTC-ATGTT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-GTGTT-A---CT--AT-TCGCCGATTCAAATCCAGCTCGCTTAANGTTTTCAGTGTTGTG-ATTTGTTGAAAANATTTC---TTGTTACA-GTGA----AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGC-T-C---GCTCGAACATAGCTCAC--------TTCA--AA-T-AAA-TCAGTTTAAACAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-CCC----------------CC----------TAGGAAGAATGAGAATCCGCGTTTGTCCTAGGAAAAAC----AAGGATCCTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AAAT--GAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AACAGGACACGATGCTTTGGCACATGTTAACAATCNNTTTNNAT--AATCTGCTCAAGTCCTGAACTGTGTTT-GCACCAGGATTTGAA-TTTTGGNCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACNTTNNNNGTTGAAATGCTNCGGTGCTCTTGTTCAGATCTC-ATATT---------TGTGGTCTTTCAAAAGTCTGTAGAATGTTTCC-TTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-GTGTT-A---CT--AT-TCACCGATTCAAATCCAGCTCGTTTAACGTTTTCAGTGTTGTG-ATTTGTTGAAAAGATTTC---TTGTTANA-GT-A----ANAA-AACTCGCATTGATTTGTAA-TNGCTTTTCCATGC-T-C---GCTCGAACACAGCTCAC--------TTCA--GA-T-AAAATCATTNTAAACAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-CCC----------------CC----------TAGGAAGAACGAGGATCCNCGTTTGTCCTAGGAGAAAC----GAGGATCCTCGTT---TGTACTGAATATATGCCAGTACAAACGGGGATCCTCGTTTCTCCTAGGAN-AAAC--GAGGATCCNCGTTTNTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACA-GTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGTTTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTTTCTT-TTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-GTGTCAA---CT--AC-TCA-----------CTAGCTCGCTTAAATTTTTCAGTGCTGTG-ATTTGTTGAAAATATTTC---TTGTTAGA-GCGA----AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGC-T-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AA-TGAAAATCATTGTAAACTATTCTCGCTTGTCCTAATCTTTG--G-CTTGTCCTAG-CCC----------------CT----------TAGGAAGAATAAGGATTCGCGTTTGTCCTTGGA-AAAC----AAAGATCCTTATC---TGTACTGAATATATGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AAAT--GAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--G-T-----CTAC-CCCTG--------------CC----------TGGGAAGAATGGGAATCTGCGTTTGTCCTAGGA-AAAC----AAGGATCTTCACT---TGTACTGAATATATACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AAAT--TAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATG-TAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT-GCATTAGGATTT-AA-TTTTGGGCCAT-TTCACATA-TTCTACTTC
gi|12 : aaaaAATTCAGTTTA--CAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTTCTAG-CCC----------------C-----------TAGGAAGAATAAAAACCCGTGTTTGTCCTATGAAAAAT----AAGGATTCTCTTT---TGTACTGAGTGGATGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAa
gi|13 : tTTGTCCTAGGA-AAAC----AAG--TCCTCATT---T-TACT-AATA-------------ACTGG-ATC-TCGTTTCTCCTAGGAA-CAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-a
gi|14 : aagatgagaaatcATAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTCCTAG--CC----------------GC----------TAGGATGAATGAGAATtatc
gi|15 : gacaaaattaaacacatcgatttctttcatgattttcagtttTCTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctgtttcaatatta-AAAT--GAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACA-GTTAACAATCTA------------CTATTC---------------TTT-GCACCAGGATTTGAA-TTTTGGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCA-A-G---A---CTAAAT-TTATCAGTTCACATa
gi|2 : -GTGTT-A---CT--AT-TCACTGATTCAAATCCAGCTCGCTTAACGTTTTCAGTGTTGTG-ATTTGTTGAAAATATCTC---TTGTT--A-GT-A----AC---AACTCACATTGAATTGTAA-TAGCTATTCCATGCTT-C---GCTCGAACATAGCTCA---------TTCA-----------------TAAACTATTCTTCTTTGTCCTAAACCTTG--G-TTTGTCCTAG-CCC---------------------------------AGA---AGGAATCGCGTTTGTCCTAGGA-AAAC----AAAGATCCTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AAAT--GAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAtttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA----------TCA---A-T-AAT-TCAGTTTA--CAATCCTCGTTCGTCCTAATCCTTG--G-TTTGTCCTAGCCCCTAGGAAGAATGAGAATCCGCGTTTGTCGTAGGAAAAACAAGGATTCTCATTTGTACT--GAGAA-CTTTGGAGTATCTCCTTTAGATATACT-AGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AAGT--TAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTGAA-TGCTGCAGTGCTCTT-TTCAGATTTC-AT-------------GTG------CAAAAGTCTAAAGAATGTT-AC-TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCA-Gtat
gi|4 : CA-CTGTT-A---AT--ATGTCGTTGATTCAA-TCC-GC-CGTTTAAAGTTT-CAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATAA----AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGC-T-T---GCTCGAacaaattgataatcacccattttcgccatcattctctaacacactgttaatatgtcgttgattcaatccgccgtttaaagtttcagtgttgtggatttgttgaaaagatttctaattgattcaataaagaaaacgcattgatttgtaactggcttttacatgcttgctcga
gi|5 : ttatactttggttgttgaatgctgcagtgctcttttcagatttcatgtgcaaaagtctaaagaatgttactgtggatgttggtaggcatattaaaaaatcttaacagttgattggagaatcagacaaattgataatcacccattttcgccatcattctctaaca--------TTCATCGA-T-AAT-TCAGTTTA--CAATATTCGCTTGTCTTAACCCTTG--G-TTTATCCTAG-CCC----------------C-----------TAGGAAGAATGAGGATCCGCGTTTGTCCTAGGAAAAA------AGGATCTTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AAAT--GAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttA-AATTACATGTT-AAAACT--AA-TCGCTGATTCAAATCCAGCTCATTTAATGTTTTCAGTGTTGTG-ATTTGTTGGACAGATTTC---TTGTTACATGT-ACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGC-TAC---GCTCGAACACAGCTCAC--------TTCA--AATT-AAAATCATTATAAACTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacatACAATCCTTGTTTGTCCTAATCCTTGTTG-TTTGTCCTAG-CCC----------------C-----------TAGGAAGAATGAGAATCCGCGTTTGTCCTAGGAAAAAC----AAGGATCTTCATT---TGTACT-ATTATATACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAAAT--TAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tataattcaagttttAATTCAGTTTA--CAATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAG--CC----------------CC----------TAGGAAGAATGAGAATCCGCGTTTGTCCTAGGAAAAAC----AAGGATCTTCATT---TGTACTGATTATATACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GAAT--TAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tatACAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-TCC----------------C-----------TAGTAATAATGATAATCCGCGTTTGTCCTAGGAAAAAC----AAGGATCCTCATT---TGTAATGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AAAA--GAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA
Alignments
lowQualScore : 1 222 1 1 2222 11 1 1 1 66666666666666 1111 1 11 1 33333 111 777777777777777777777 111 1 1 444444444444444444444444 22222222222 11 222222 11 444444444444444444 3333333 11 111 33333333333 11 1 2222222 33333333333333333333 1 33 6666666666666666666666666666 111111 111111 22222222222222222
lowQualScore : 5 111 5 5 3333 66 1 2 5 5 3 7 33333333333333 8888 3 88 6 3 6 0 0 55555 1 555 7 6 444444444444444444444 66 6 2 3 777 2 0 2 0 8 888888888888888888888888 1 44444444444 0 33 666666 33 444444444444444444 3 2222222 11 777 33333333333 00 2 1 0 0 2222222 22222222222222222222 1 4 00 55 4 55 1111111111111111111111111111 3 333333 777 5 7 4 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . . . . . .............. .... . .. . . . . . ..... . ... . . ..................... .. . . . ... . . . . . ........................ . ........... . .. ...... .. .................. . ....... .. ... ........... .. . . . . ....... .................... . . .. .. . .. ............................ . ...... ... . . . ...... ................. . .
lowQualScore : 5 555 5 0 5555 55 0 5 5 5 3 3 00000000000000 0000 3 33 7 3 7 7 7 33333 0 333 3 7 222222222222222222222 00 5 5 2 000 5 0 5 0 0 555555555555555555555555 2 88888888888 2 88 000000 88 555555555555555555 2 5555555 00 555 22222222222 88 5 0 0 2 5555555 66666666666666666666 0 0 77 55 0 66 1111111111111111111111111111 6 222222 000 0 3 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC-C-TTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAA-----TGTT-----GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-G------TG----TCAA--C---TATTCGCTG--ATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT-----GTT----------GTGATTTGTTGA-------AAA-NATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGC-T-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GTTTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-CCC----------------CC----------TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAAC----AAGGATCCTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTTCTC-TTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-NTTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCA------TGTT-----GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-G------TG----TTA---C---TATTCGCCG--ATTCAAATCCAGCTCGC--TTAA-----NGTT--TTCAGT-----GTT----------GTGATTTGTTGA-------AAA-NATTTC---TTGTTACA-GTG-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGC-T-C---GCTCGAACATAGCTCACTT--------CA--AAT--AAATCA-GTTTAAACAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-CCC----------------CC----------TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAAC----AAGGATCCTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACAGTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGT-TTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTT-TCTTTTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCA-G------TG----TCAA--C---TACTCACT-------------AGCTCGC--TTAA-----ATTT--TTCAGT-----GCT----------GTGATTTGTTGA-------AAA-TATTTC---TTGTTAGA-GCG-A--AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGC-T-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AATGAAAATCA-TTGTAAACTATTCTCGCTTGTCCTAATCTTTG--G-CTTGTCCTAG-CCC----------------CT----------TAGGAAGAATAAGGA-TTCGCGTTTGTCCTTGGAAAA-C----AAAGATCCTTATC---TGTACTGAATATATGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AA-ATGAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--G-T-----CTAC-CCCTG--------------CC----------TGGGAAGAATGGGAA-TCTGCGTTTGTCCTAGGAAAA-C----AAGGATCTTCACT---TGTACTGAATATATACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AA-ATTAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGTAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT--GCATTAGGATTT-AATTTT-GGGCCAT-TTCACATATTCTAC-TTC
gi|12 : aaaaT--AATTCA-GTTTA--CAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTTCTAG-CCC----------------C-----------TAGGAAGAATAAAAA-CCCGTGTTTGTCCTATGAAAAAT----AAGGATTCTCTTT---TGTACTGAGTGGATGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAA-a
gi|13 : AAGA-TGAGAAATC-----TTGTCCTAGGAAAA-C----AAG--TCCTCATT---T-TACT-AATA-------------ACTGG-ATC-TCGTTTCTCCTAGGAACAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-
gi|14 : TCA-GTTTA--TAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTCCTAG--CC----------------GC----------TAGGATGAATGAGAA-Ttatc
gi|15 : gacaaaattaaacacatcgatttctttcatgatttTTTCAA-----TATT-----AT---CTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctg-AA-ATGAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACAGTTAACAATCTA------------CTATTC---------------TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC-------TATT------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCA-a
gi|2 : -G------TG----TTA---C---TATTCACTG--ATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT-----GTT----------GTGATTTGTTGA-------AAA-TATCTC---TTGTT--A-GT------AAC-AACTCACATTGAATTGTAA-TAGCTATTCCATGCTT-C---GCTCGAACATAGCTCA-TT--------CA-----------------TAAACTATTCTTCTTTGTCCTAAACCTTG--G-TTTGTCCTAG-CCC-----------------------------AGAAGGAAT--------CGCGTTTGTCCTAGG-AAAAC----AAAGATCCTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AA-ATGAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA--T--------CA--A-T--AATTCA-GTTTA--CAATCCTCGTTCGTCCTAATCCTTG--G-TTTGTCCTAGCCCCTAGGAAGAATGAGAATCCGCGTTTGTCGTAGGAAAAACAAGGA-TTCTCATTTGTACTGAGAA---CTTTGGAGTATCTCCTTTAGATATACT-AGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-GTTAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTG-AATGCTGCAGTGCTCTT-TTCAGATTTCA------TG-T-----G--------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCA-GACAAATTGATAATCA---CCCATTTTCGCCATCATTC---TCTAACACACTGTTAATATGTCGTTGATTCAATCCGCCGTTTAAAGTTTCAGTG--TTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATA-A--AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGC-T-T---GCTCGAtat
gi|5 : TT--------CATCGAT--AATTCA-GTTTA--CAATATTCGCTTGTCTTAACCCTTG--G-TTTATCCTAG-CCC----------------C-----------TAGGAAGAATGAGGA-TCCGCGTTTGTCCTAGGAAAAA------AGGATCTTCATT---TGTACTGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AA-ATGAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttA-AATTACA------TG----TTAAAAC---TAATCGCTG--ATTCAAATCCAGCTCAT--TTAA-----TGTT--TTCAGT-----GTT----------GTGATTTGTTGG-------ACA-GATTTC---TTGTTACATGTACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGC-TAC---GCTCGAACACAGCTCACTT--------CA--AATTAAAATCA-TTATAAACTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacatAT--AATTCAAGTTTTA-CAATCCTTGTTTGTCCTAATCCTTGTTG-TTTGTCCTAG-CCC----------------C-----------TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAAC----AAGGATCTTCATT---TGTACT-ATTATATACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAA-ATTAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tAT--AATTCA-GTTTA--CAATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAG--CC----------------CC----------TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAAC----AAGGATCTTCATT---TGTACTGATTATATACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GA-ATTAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tAT--GATTTA-GTTTA--CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-TCC----------------C-----------TAGTAATAATGATAA-TCCGCGTTTGTCCTAGGAAAAAC----AAGGATCCTCATT---TGTAATGAATATATGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-AAGAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA
Alignments
lowQualScore : 1 222 1 1 2222 11 1 1 1 66666666666666 1111 1 11 1 4444 1 555555555555555555555 111 1 1 1 444444444444 111 11111111111 11 222222 11 88888888888888888888 1 111 111 222222222 1 33333 33333333333 1111111 22 2222 1 33333333333333333333333 11111111 111111 22222222222222222
lowQualScore : 5 111 5 5 3333 66 1 2 5 5 3 7 33333333333333 8888 3 88 6 3 6 0 0 7777 1 3 7 6 777777777777777777777 66 6 2 3 777 2 0 2 0 0 777777777777 9 555 66666666666 0 33 555555 33 11111111111111111111 0 1 777 555 666666666 2 1 0 0 11111 00000000000 8888888 1 4 4 44 55 4 1 2222 3 0 77777777777777777777777 44444444 7 4 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . . . . . .............. .... . .. . . . . . .... . . . . ..................... .. . . . ... . . . . . ............ . ... ........... . .. ...... .. .................... . . ... ... ......... . . . . ..... ........... ....... . . . .. .. . . .... . . ....................... ........ . . ...... ................. . .
lowQualScore : 5 555 5 0 5555 55 0 5 5 5 3 3 00000000000000 0000 3 33 7 3 7 7 7 3333 0 3 3 7 222222222222222222222 00 5 5 2 000 5 0 5 0 0 777777777777 2 000 00000000000 2 88 222222 88 22222222222222222222 0 0 555 888 000000000 5 0 0 2 55555 88888888888 1111111 1 0 0 44 55 0 6 1111 6 6 00000000000000000000000 55555555 3 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCC--C-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATGTT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCC--CCTAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACAGTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGT-TTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTT-TCTTTTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--CTCAC--T-----------AGCTCGC--TTAA-----ATTT--TTCAGT--------------------GCTGT-GATTTGTTGAAAATATTTC---TTGTTAGA-GCG-A--AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGCT-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AATGAAAATCA-TT-GTAAACTATTCTCGCTTGTCCTAATCTTTG--G-CTTGTCCTAGCCC--CTTAGGAAGAATAAGGA-TTCGCGTTTGTCCTTGGAAAA-CAAAGATCCTTATCTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AA-ATGAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--G-T-----CTACCCCTGCCTGGGAAGAATGGGAA-TCTGCGTTTGTCCTAGGAAAA-CAAGGATCTTCACTTGTACTGA-----------------------ATATA--------TACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AA-ATTAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGTAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT--GCATTAGGATTT-AATTTT-GGGCCAT-TTCACATATTCTA-CTTC
gi|12 : aaaaT--AATTCA-GT-TTA--CAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTTCTAGCCC--C-TAGGAAGAATAAAAA-CCCGTGTTTGTCCTATGAAAAATAAGGATTCTCTTTTGTACTGA-----------------------GTGGA--------TGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAA-a
gi|13 : AAGA-TGAGAAATC-----TTGTCCTAGGAAAA-CAAG--TCCTCATTT-TACT-A-----------------------ATA---------------------ACTGG-ATC-TCGTTTCTCCTAGGAACAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-
gi|14 : TTCA-GT-TTA--TAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTCCTAG-CC--GCTAGGATGAATGAGAA-Ttatc
gi|15 : gacaaaattaaacacatcgatttctttcatgattTTTCAATATT----------AT---CTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctg-AA-ATGAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACAGTTAACAATCTA------------CTATTC---------------TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCAa
gi|2 : G------TG----TTA-CTA--TTCAC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAATATCTC---TTGTTA---GTA-A--C----AACTCACATTGAATTGTAA-TAGCTATTCCATGCTTC---GCTCGAACATAGCTCA-TT--------CA----T--AA-----------A-CTATTCTTCTTTGTCCTAAACCTTG--G-TTTGTCCTAGCCC-----AGAAGGAAT--------CGCGTTTGTCCTAGGAAAA-CAAAGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AA-ATGAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA--T--------CA--A-T--AATTCA-GT-TTA--CAATCCTCGTTCGTCCTAATCCTTG--G-TTTGTCCTAGCCC--C-TAGGAAGAATGAGAA-TCCGCGTTTGTCGTAGGAAAAACAAGGATTCTCATTTGTACTGAGAACTTTGGAGTATCTCCTTTAGATATACTAGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-GTTAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTG-AATGCTGCAGTGCTCTT-TTCAGATTTCA----T----------GTG------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCAGACAAATTGATAATCACCCATTTTCGCCATCATTC---TCTAACACACTGTTAATATGTCGTTGATTCAATCCGCCGTTTAAAGTTTCAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATA-A--AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGCT-T---GCTCGAtat
gi|5 : TT--------CATCGAT--AATTCA-GT-TTA--CAATATTCGCTTGTCTTAACCCTTG--G-TTTATCCTAGCCC--C-TAGGAAGAATGAGGA-TCCGCGTTTGTCCTAGGAAAAA--AGGATCTTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AA-ATGAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttAACTA--ATCGC--TGATTCAAATCCAGCTCAT--TTAA-----TGTT--TTCAGT--------------------GTTGT-GATTTGTTGGACAGATTTC---TTGTTACATGTACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGCTAC---GCTCGAACACAGCTCACTT--------CA--AATTAAAATCA-TTATAAA-CTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacataaattacatgttaaAT--AATTCAAGT-TTTA-CAATCCTTGTTTGTCCTAATCCTTGTTG-TTTGTCCTAGCCC--C-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACT-A-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAA-ATTAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tAT--AATTCA-GT-TTA--CAATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAG-CC--CCTAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACTGA-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GA-ATTAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tAT--GATTTA-GT-TTA--CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGTCC--C-TAGTAATAATGATAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTAATGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-AAGAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA
Alignments
lowQualScore : 1 222 1 1 2222 11 1 1 1 66666666666666 1111 1 11 1 4444 1 11 555555555555555 111 1 1 1 444444444444 111 11111111111 11 222222 11 88888888888888888888 1 111 111 222222222 1 33333 33333333333 1111111 222 33333333333333333333333 11111111 111111 22222222222222222
lowQualScore : 5 111 5 5 3333 66 1 2 5 5 3 7 33333333333333 8888 3 88 6 3 6 0 0 7777 1 3 7 6 22 0 555555555555555 66 6 2 3 777 2 0 2 0 0 777777777777 9 555 66666666666 0 33 555555 33 11111111111111111111 0 1 777 555 666666666 2 1 0 0 11111 00000000000 8888888 1 4 4 000 55 4 4 3 5 77777777777777777777777 44444444 7 4 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . . . . . .............. .... . .. . . . . . .... . . . . .. . ............... .. . . . ... . . . . . ............ . ... ........... . .. ...... .. .................... . . ... ... ......... . . . . ..... ........... ....... . . . ... .. . . . . ....................... ........ . . ...... ................. . .
lowQualScore : 5 555 5 0 5555 55 0 5 5 5 3 3 00000000000000 0000 3 33 7 3 7 7 7 3333 0 3 3 7 55 8 555555555555555 00 5 5 2 000 5 0 5 0 0 777777777777 2 000 00000000000 2 88 222222 88 22222222222222222222 0 0 555 888 000000000 5 0 0 2 55555 88888888888 1111111 1 0 0 444 55 0 0 6 7 00000000000000000000000 55555555 3 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACAGTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGT-TTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTT-TCTTTTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--CTCAC--T-----------AGCTCGC--TTAA-----ATTT--TTCAGT--------------------GCTGT-GATTTGTTGAAAATATTTC---TTGTTAGA-GCG-A--AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGCT-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AATGAAAATCA-TT-GTAAACTATTCTCGCTTGTCCTAATCTTTG--G-CTTGTCCTAGCCCCTTAGGAAGAATAAGGA-TTCGCGTTTGTCCTTGG-AAAACAAAGATCCTTATCTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AA-ATGAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--G-TCTACCCCTGCC---TGGGAAGAATGGGAA-TCTGCGTTTGTCCTAGGAAAA-CAAGGATCTTCACTTGTACTGA-----------------------ATATA--------TACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AA-ATTAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGTAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT--GCATTAGGATTT-AATTTT-GGGCCAT-TTCACATATTCTA-CTTC
gi|12 : aaaaT--AATTCA-GT-TTA--CAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTTCTAGCCCC-TAGGAAGAATAAAAA-CCCGTGTTTGTCCTATGAAAAATAAGGATTCTCTTTTGTACTGA-----------------------GTGGA--------TGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAA-a
gi|13 : AAGA-TGAGAAATC-----TTGTCCTAGGAAAA-CAAG--TCCTCATTT-TACT-A-----------------------ATA---------------------ACTGG-ATC-TCGTTTCTCCTAGGAACAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-
gi|14 : TTCA-GT-TTA--TAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCGC-TAGGATGAATGAGAA-Ttatc
gi|15 : gacaaaattaaacacatcgatttctttcatgattTTTCAATATT----------AT---CTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctg-AA-ATGAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACAGTTAACAATCTA------------CTATTC---------------TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCAa
gi|2 : G------TG----TTA-CTA--TTCAC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAATATCTC---TTGTTA---GTA-A--C----AACTCACATTGAATTGTAA-TAGCTATTCCATGCTTC---GCTCGAACATAGCTCA-TT--------CA----T--AA-----------A-CTATTCTTCTTTGTCCTAAACCTTG--G-TTTGTCCTAGCCC---AGAAGGAAT--------CGCGTTTGTCCTAGGAAAA-CAAAGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AA-ATGAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA--T--------CA--A-T--AATTCA-GT-TTA--CAATCCTCGTTCGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCGTAGGAAAAACAAGGATTCTCATTTGTACTGAGAACTTTGGAGTATCTCCTTTAGATATACTAGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-GTTAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTG-AATGCTGCAGTGCTCTT-TTCAGATTTCA----T----------GTG------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCAGACAAATTGATAATCACCCATTTTCGCCATCATTC---TCTAACACACTGTTAATATGTCGTTGATTCAATCCGCCGTTTAAAGTTTCAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATA-A--AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGCT-T---GCTCGAtat
gi|5 : TT--------CATCGAT--AATTCA-GT-TTA--CAATATTCGCTTGTCTTAACCCTTG--G-TTTATCCTAGCCCC-TAGGAAGAATGAGGA-TCCGCGTTTGTCCTAGGAAAAA--AGGATCTTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AA-ATGAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttAACTA--ATCGC--TGATTCAAATCCAGCTCAT--TTAA-----TGTT--TTCAGT--------------------GTTGT-GATTTGTTGGACAGATTTC---TTGTTACATGTACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGCTAC---GCTCGAACACAGCTCACTT--------CA--AATTAAAATCA-TTATAAA-CTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacataaattacatgttaaAT--AATTCAAGT-TTTA-CAATCCTTGTTTGTCCTAATCCTTGTTG-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACT-A-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAA-ATTAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tAT--AATTCA-GT-TT-A-CAATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACTGA-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GA-ATTAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tAT--GATTTA-GT-TTA--CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGTCCC-TAGTAATAATGATAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTAATGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-AAGAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA
Alignments
lowQualScore : 1 222 1 1 2222 11 1 1 1 66666666666666 1111 1 11 1 4444 1 11 555555555555555 111 1 1 1 444444444444 111 11111111111 11 222222 11 88888888888888888888 1 111 111 222222222 1 33333 33333333333 1111111 222 33333333333333333333333 11111111 111111 22222222222222222
lowQualScore : 5 111 5 5 3333 66 1 2 5 5 3 7 33333333333333 8888 3 88 6 3 6 0 0 7777 1 3 7 6 22 0 555555555555555 66 6 2 3 777 2 0 2 0 0 777777777777 9 555 66666666666 0 33 555555 33 11111111111111111111 0 1 777 555 666666666 2 1 0 0 11111 00000000000 8888888 1 4 4 000 55 4 4 3 5 77777777777777777777777 44444444 7 4 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . . . . . .............. .... . .. . . . . . .... . . . . .. . ............... .. . . . ... . . . . . ............ . ... ........... . .. ...... .. .................... . . ... ... ......... . . . . ..... ........... ....... . . . ... .. . . . . ....................... ........ . . ...... ................. . .
lowQualScore : 5 555 5 0 5555 55 0 5 5 5 3 3 00000000000000 0000 3 33 7 3 7 7 7 3333 0 3 3 7 55 8 555555555555555 00 5 5 2 000 5 0 5 0 0 777777777777 2 000 00000000000 2 88 222222 88 22222222222222222222 0 0 555 888 000000000 5 0 0 2 55555 88888888888 1111111 1 0 0 444 55 0 0 6 7 00000000000000000000000 55555555 3 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACAGTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGT-TTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTT-TCTTTTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--CTCAC--T-----------AGCTCGC--TTAA-----ATTT--TTCAGT--------------------GCTGT-GATTTGTTGAAAATATTTC---TTGTTAGA-GCG-A--AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGCT-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AATGAAAATCA-TT-GTAAACTATTCTCGCTTGTCCTAATCTTTG--G-CTTGTCCTAGCCCCTTAGGAAGAATAAGGA-TTCGCGTTTGTCCTTGG-AAAACAAAGATCCTTATCTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AA-ATGAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--G-TCTACCCCTGCC---TGGGAAGAATGGGAA-TCTGCGTTTGTCCTAGGAAAA-CAAGGATCTTCACTTGTACTGA-----------------------ATATA--------TACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AA-ATTAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGTAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT--GCATTAGGATTT-AATTTT-GGGCCAT-TTCACATATTCTA-CTTC
gi|12 : aaaaT--AATTCA-GT-TTA--CAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTTCTAGCCCC-TAGGAAGAATAAAAA-CCCGTGTTTGTCCTATGAAAAATAAGGATTCTCTTTTGTACTGA-----------------------GTGGA--------TGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAA-a
gi|13 : AAGA-TGAGAAATC-----TTGTCCTAGGAAAA-CAAG--TCCTCATTT-TACT-A-----------------------ATA---------------------ACTGG-ATC-TCGTTTCTCCTAGGAACAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-
gi|14 : TTCA-GT-TTA--TAATCCTTGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCGC-TAGGATGAATGAGAA-Ttatc
gi|15 : gacaaaattaaacacatcgatttctttcatgattTTTCAATATT----------AT---CTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctg-AA-ATGAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACAGTTAACAATCTA------------CTATTC---------------TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCAa
gi|2 : G------TG----TTA-CTA--TTCAC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAATATCTC---TTGTTA---GTA-A--C----AACTCACATTGAATTGTAA-TAGCTATTCCATGCTTC---GCTCGAACATAGCTCA-TT--------CA----T--AA-----------A-CTATTCTTCTTTGTCCTAAACCTTG--G-TTTGTCCTAGCCC---AGAAGGAAT--------CGCGTTTGTCCTAGGAAAA-CAAAGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AA-ATGAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA--T--------CA--A-T--AATTCA-GT-TTA--CAATCCTCGTTCGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCGTAGGAAAAACAAGGATTCTCATTTGTACTGAGAACTTTGGAGTATCTCCTTTAGATATACTAGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-GTTAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTG-AATGCTGCAGTGCTCTT-TTCAGATTTCA----T----------GTG------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCAGACAAATTGATAATCACCCATTTTCGCCATCATTC---TCTAACACACTGTTAATATGTCGTTGATTCAATCCGCCGTTTAAAGTTTCAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATA-A--AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGCT-T---GCTCGAtat
gi|5 : TT--------CATCGAT--AATTCA-GT-TTA--CAATATTCGCTTGTCTTAACCCTTG--G-TTTATCCTAGCCCC-TAGGAAGAATGAGGA-TCCGCGTTTGTCCTAGGAAAAA--AGGATCTTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AA-ATGAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttAACTA--ATCGC--TGATTCAAATCCAGCTCAT--TTAA-----TGTT--TTCAGT--------------------GTTGT-GATTTGTTGGACAGATTTC---TTGTTACATGTACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGCTAC---GCTCGAACACAGCTCACTT--------CA--AATTAAAATCA-TTATAAA-CTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacataaattacatgttaaAT--AATTCAAGT-TTTA-CAATCCTTGTTTGTCCTAATCCTTGTTG-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACT-A-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAA-ATTAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tAT--AATTCA-GT-TT-A-CAATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACTGA-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GA-ATTAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tAT--GATTTA-GT-TTA--CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGTCCC-TAGTAATAATGATAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTAATGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-AAGAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA
blockSeqs : A AAA . C . A A G . . . A TTTTGGATAAT AAGT G . G . C TCTC T G A G AA TGGT CT G C A ATA C A C T G ACAAATTGATAA C TTT TGATTCAAA TG TATGTC GA CCGCCGTTTAAAGTTTCAGT G T TAA CAT CATTAAAG C A C TC CTT TCGAT T A A AA TT T . A A GAACTTTGGAGTATCTCCTTTAG CTAGTATA C C TACATG GAATCGAGGTCGATCTG T
blockSeqs : . . AC . . . . . . CTA . . . A GTG CA A C A A C . C . . TG A T TGATTCAAA . C . . . G . CA AAGAA C T . AC TT AATTA T . . TA . . . . A . . G . . . .
blockSeqs : . AT . . . . . . . . . . . A CATCATTC . T . . . G . . AC . T . T T AT T . . A . . . . A . . . . . . .
blockSeqs : T T . . A . . . . A . . . . . . .
blockSeqs : A . . A . . . . A . . . . . . .
blockSeqs : T . . A . . . . A . . . . . . .
blockSeqs : T . . A . . . . . . . . . . . .
blockSeqs : T . . A . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : A**
originalCons : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTAA-CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
finalCons : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCA-GT-TTA--CAATCCTCGTTTGTCCTAATCCTTG--G-TTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Alignments
lowQualScore : 1 222 1 1 2222 11 1 1 1 66666666666666 1111 1 11 1 4444 1 11 555555555555555 111 1 1 1 444444444444 111 11111111111 11 222222 11 88888888888888888888 1 111 111 222222222 1 33333 33333333333 1111111 1111 33333333333333333333333 11111111 111111 22222222222222222
lowQualScore : 5 111 5 5 3333 66 1 2 5 5 3 7 33333333333333 8888 3 88 6 3 6 0 0 7777 1 3 7 6 22 0 555555555555555 66 6 2 3 777 2 0 2 0 0 777777777777 9 555 66666666666 0 33 555555 33 11111111111111111111 0 1 777 555 666666666 2 1 0 0 11111 00000000000 8888888 1 777 4444 55 4 4 3 5 77777777777777777777777 44444444 7 4 111111 88888888888888888 0 4
lowQualScore : . ... . . .... .. . . . . . . .............. .... . .. . . . . . .... . . . . .. . ............... .. . . . ... . . . . . ............ . ... ........... . .. ...... .. .................... . . ... ... ......... . . . . ..... ........... ....... . ... .... .. . . . . ....................... ........ . . ...... ................. . .
lowQualScore : 5 555 5 0 5555 55 0 5 5 5 3 3 00000000000000 0000 3 33 7 3 7 7 7 3333 0 3 3 7 55 8 555555555555555 00 5 5 2 000 5 0 5 0 0 777777777777 2 000 00000000000 2 88 222222 88 22222222222222222222 0 0 555 888 000000000 5 0 0 2 55555 88888888888 1111111 1 111 0000 55 0 0 6 7 00000000000000000000000 55555555 3 0 555555 00000000000000000 7 0
consensus : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCAG--TTTACA----ATCCTCGTTTGTCCTAATCCTTG--GTTT-GTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
Reference ( family-2247 ) : NNNNNTCCCAACCTAAATTTCATGACCATTTGCTGATTGTCNTAACNTTTCCGCAAATGTCA-AACAGGACACGATGCTTTGGCACAGTTAACAATCTNTTT--AT--AATCTGCTCAAG-CCTGAACTGT-TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCGTATTCC--CTTCNTCCAAACACAAAGCTTTCACGATCTTGTTATACTTT-TCTGTTGAAATGCTGAAGTGCTCTTGTTTAGATTTCAATATT----------GTGGTCTTTCAAAAGTCTGTAGAATGTTTCCTTTTGGGCCATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--TTCGC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAANATTTC---TTGTTACA-GTA-A--AGAA-AACTCACATTGANTTGTAA-TGGCTTTTCCATGCT-C---GCTCGAACATAGCTCACTT--------CA--AAT--AATTCAG--TTTACA----ATCCTCGTTTGTCCTAATCCTTG--GTTT-GTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-ATGAGGATCCGCGTTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCCTCGTTTGTCCTG-TGACATA
gi|1 : TCCCA-CTT---TTTCATGAC-ATTTGCTGATTGTCTTAACTTTTCCTCAAATGTCACAACAGGACACGATGCTTTGGCACAGTAAACAATCTGTTTCTATCCAATCTGCCCAAG-CCTGAACTGT-TTTTTGCACCAGGATTTGAATTTTTGGTCCATCTTCACGAATT--------ATCCAAACACAAAGCTTTCACGATCTTGTTATATTTT-TCTTTTGAAATGCTGAAGTTCTCTTGTTTAGATTTCAATGTTATGTTTGGATGTGGTCTTTCAAAAGTCTGTAAAATGCTTCCTTTTGGGCAATGTTGGTAGGC--ATATATCAACAAAATCTT-ACAGTCTGA-TGGA-AATCAG------TG----TCAACTA--CTCAC--T-----------AGCTCGC--TTAA-----ATTT--TTCAGT--------------------GCTGT-GATTTGTTGAAAATATTTC---TTGTTAGA-GCG-A--AGAACAACTCACATTGAATTGTAA-TGTCTTTTCCATGCT-CCTTGCTCGAACATAGCTCACTTTAAACATTCA--AATGAAAATCAT--TGTAAACT--ATTCTCGCTTGTCCTAATCTTTG--GCTT-GTCCTAGCCCCTTAGGAAGAATAAGGA-TTCGCGTTTGTCCTTGG-AAAACAAAGATCCTTATCTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTTGTTTCTCCTAGGAA-AA-ATGAGGATCCGCATTTGTCC------TAGGACGATCTG-----------------GGATCGTCCTGAATCTTCGTTTGTTCTG-TGACATA
gi|10 : aaatgCCTTA--GTCT-ACCCCTGCC---TGGGAAGAATGGGAA-TCTGCGTTTGTCCTAGGAAAA-CAAGGATCTTCACTTGTACTGA-----------------------ATATA--------TACCAGTACAAACTGAGATCCTTGTTTCTCCTAGGAA-AA-ATTAGGATCCGCATTTGTCC------TAGGA---TTT------------------------TCCTGAATCCGCGTTTGCCCTG-TGA
gi|11 : TCCCAACCTAAATTTC-TGACCATT----GATTGTCA-AACATTTCTGCAA-TG-CA-AATAGGAC-CGATGCTTTGGCACATGTAACAATCGTTTTGGAT--AAT-TGCTCAAGTCCTGAACTGTGTTT--GCATTAGGATTT-AATTTT-GGGCCAT-TTCACATATTCTA-CTTC
gi|12 : aaaaT--AATTCAG--TTTACA----ATCCTTGTTTGTCCTAATCCTTG--GTTT-GTTCTAGCCCC-TAGGAAGAATAAAAA-CCCGTGTTTGTCCTATGAAAAATAAGGATTCTCTTTTGTACTGA-----------------------GTGGA--------TGTCAGTACGAAATGGGATCCTCATTTCTTCTAGGAA-a
gi|13 : AAGA-TGAGAAATC-----TTGTCCTAGGAAAA-CAAG--TCCTCATTT-TACT-A-----------------------ATA---------------------ACTGG-ATC-TCGTTTCTCCTAGGAACAACATGAGGATCCGCGTTTGT-C------TAGGAC-ATCTG-----------------AG--CATCCTG-ATCC-CGTTTGTCCTG-
gi|14 : TTCAG--TTTATA----ATCCTTGTTTGTCCTAATCCTTG--GTTT-GTCCTAGCCGC-TAGGATGAATGAGAA-Ttatc
gi|15 : gacaaaattaaacacatcgatttctttcatgattTTTCAATATT----------AT---CTTTCAAAAGTCAGTAAAATGTTTCCTTTTTGGCCATGTTTGT------ATAAATCATCAAAATCTT-ACAGTCAGC-TGGA-AA
gi|16 : tctg-AA-ATGAG-ATCCGCGTTTGTGC------T--GACGATCTG-----------------GAATCGTCCTGAATCCGCGTTTGTTCTG-TGATA
gi|2 : -AACAGGACATGATGCTTTGGCACAGTTAACAATCTA------------CTATTC---------------TTT--GCACCAGGATTTGAATTTT-GGTCCATCTTCGCATATTTCTCCTTCTTCCAAACACAAAGCTTTCACAATCTTGTTATACATT-TCAGTTGAAATGCTTAGGTGCTCTTGTTTAGATCTC--TATT-----------TGGTCTTTCAAAAGTCTGTAGAATGTTTCCATTTGGACCATGTTGGTAGGCATATATATCAACAAAATCTT-ACAATCTGA-TGGA-AATCAa
gi|2 : G------TG----TTA-CTA--TTCAC--TGATTCAAATCCAGCTCGC--TTAA-----CGTT--TTCAGT--------------------GTTGT-GATTTGTTGAAAATATCTC---TTGTTA---GTA-A--C----AACTCACATTGAATTGTAA-TAGCTATTCCATGCTTC---GCTCGAACATAGCTCA-TT--------CA----T--AA----------ACT----ATTCTTCTTTGTCCTAAACCTTG--GTTT-GTCCTAGCCC---AGAAGGAAT--------CGCGTTTGTCCTAGGAAAA-CAAAGATCCTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCCCGTTTCTTCTAGGAA-AA-ATGAGGATCCGCGTTTGTCCTACATGTAGGACGATCTGGAATCGAGGTCGATCTGGGATCGTCCTGACTCCTCGTTTGTCCTG-TGACATAagactaaatttatcagttcacattttctcatcatacccctgaacatacgtgttactattcactgattcaaatccagctcgcttaacgttttcagtgttgtgatttgttgaaaatatctcttgttagtaacaactcacattgaattgtaatagctattccatgcttcgctcgaacatagctcattcataaactattcttctttgtcctaaaccttggtttgtcctagcccagaaggaatcgcgtttgtcctaggaaaacaaagatcctcatttgtactgaatatatgccagtacaaactgggatccccgtttcttctaggaaaaatgaggatccgcgtttgtcctacatgtaggacgatctggaatcgaggtcgatctgggatcgtcctgactcctcgtttgtcctgtgacatat
gi|3 : aacaggacatgatgctttggcacagttaacaatctactattctttgcaccaggatttgaattttggtccatcttcgcatatttctccttcttccaaacacaaagctttcacaatcttgttatacatttcagttgaaatgcttaggtgctcttgtttagatctctatttggtctttcaaaagtctgtagaatgtttccatttggaccatgttggtaggcatatatatcaacaaaatcttacaatctgatggaaatcaagactaaatttatcagttcacattttctcatcatacccctgaacatacCTCA--T--------CA--A-T--AATTCAG--TTTACA----ATCCTCGTTCGTCCTAATCCTTG--GTTT-GTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCGTAGGAAAAACAAGGATTCTCATTTGTACTGAGAACTTTGGAGTATCTCCTTTAGATATACTAGTATATGTCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-GTTAGGATCCGTGTTTGTCC------TAGGACGATCCG-----------------AGATCGTTCTGAATCTTCATTTGACCTG-TGATATAt
gi|4 : tgacaaaaataaacttatcgatttatttgatgcttTTATACTTTGGTTGTTG-AATGCTGCAGTGCTCTT-TTCAGATTTCA----T----------GTG------CAAAAGTCTAAAGAATGTTAC--TGTGG---ATGTTGGTAGGC----ATATTAA-AAAATCTTAACAGT-TGATTGGAGAATCAGACAAATTGATAATCACCCATTTTCGCCATCATTC---TCTAACACACTGTTAATATGTCGTTGATTCAATCCGCCGTTTAAAGTTTCAGTGTTGTGGATTTGTTGAAAAGATTTCTAATTGATTCA-ATA-A--AGAA-AA--CGCATTGATTTGTAACTGGCTTTTACATGCT-T---GCTCGAtat
gi|5 : TT--------CATCGAT--AATTCAG--TTTACA----ATATTCGCTTGTCTTAACCCTTG--GTTT-ATCCTAGCCCC-TAGGAAGAATGAGGA-TCCGCGTTTGTCCTAGGAAAAA--AGGATCTTCATTTGTACTGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGTA-AA-ATGAGGATCAGCGTTTGTCC------TAG-------TG-----------------GGATTATCCTGAATCCTCATTTGTCCTG-TCACA
gi|6 : aacttaaactcattgatttctcccatgatttAACTA--ATCGC--TGATTCAAATCCAGCTCAT--TTAA-----TGTT--TTCAGT--------------------GTTGT-GATTTGTTGGACAGATTTC---TTGTTACATGTACATTAAAG-AACTCATATTGATTTGTAA-TTGCTTTTCCATGCTAC---GCTCGAACACAGCTCACTT--------CA--AATTAAAATCA----TTATAAACTATTCGCGTTTGTTCTAATCCTTc
gi|7 : agactaaattgaccagtgcacattttctcatcattcctctgaacataaattacatgttaaAT--AATTCAAGTTTTACA----ATCCTTGTTTGTCCTAATCCTTGTTGTTT-GTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACT-A-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAAGAA-ATTAGGATCCGCGTTTATCC------TAGGACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTG-TGACATA
gi|8 : tAT--AATTCAG--TTTACA----ATCCTTGTTTGTCCTAATCCTTG--GTTTTGTCCTAGCCCC-TAGGAAGAATGAGAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCTTCATTTGTACTGA-----------------------TTATA--------TACCAGTACAAACTAAGATCCGCGTTTCTCCTAGGAA-GA-ATTAGGATCCGCGTTTATCC------TA-GACGATCTG-----------------GGATTGTCCTGAATCCTCGTTTGTGCTGTTGACATAtat
gi|9 : tAT--GATTTAG--TTTACA----ATCCTCGTTTGTCCTAATCCTTG--GTTT-GTCCTAGTCCC-TAGTAATAATGATAA-TCCGCGTTTGTCCTAGGAAAAACAAGGATCCTCATTTGTAATGA-----------------------ATATA--------TGCCAGTACAAACTGGGATCCTCGTTTCTCCTAGGAA-AA-AAGAGGATCCGCTTTTGCCC------TAGGACGATCTG-----------------GGATCCTCCTGAATCCTCGTTTGTCCTG-TGAGATA