lowQualScore : 11 11 33333 2222222 11111 2222222222222222222222 2222222 1111 4444444444444444444444444444444444444 11 333333333333333333333333333333333333333 11111111 11111 22 11111 1
lowQualScore : 5 5 33 6666 88 99 5 77 77 99999 5 4 6666666 66 4 66 22222 1111111111111111111111 4 1111111 2222 55 6666666666666666666666666666666666666 44 4 4 4 00 333333333333333333333333333333333333333 6 77 4 5 3 88888888 666 4 77777 0 4 4 88 4 11111 4 555 4 55 4 4 55 6 55 4 4 4 4 4 66 4 6 4 6
lowQualScore : . . .. .... .. .. . .. .. ..... . . ....... .. . .. ..... ...................... . ....... .... .. ..................................... .. . . . .. ....................................... . .. . . . ........ ... . ..... . . . .. . ..... . ... . .. . . .. . .. . . . . . .. . . . .
lowQualScore : 7 7 66 6666 00 00 7 99 99 66666 0 4 9999999 22 4 77 66666 4444444444444444444444 0 0000000 7777 55 5555555555555555555555555555555555555 66 4 4 4 66 000000000000000000000000000000000000000 2 99 0 0 2 66666666 222 4 00000 2 4 4 33 4 11111 4 222 0 55 0 0 55 9 55 0 4 4 4 4 11 4 2 4 4
consensus : CAAAAAT-CTCGATTTG-TCAAA-ACCTTAAATCG-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GC-AA--TA-TCTCGCTACA-AAC-A-A--ATCTTTT-T-AAT-AAATN----ATCTG-A----A--A--TG-C--TTTAA-GTA---T-N-TCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT---TA----A-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCTA-CCATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTNAATAGTTAT-GTC-TGT-TAT-CGA-----TATT-GT-C-TGA-C--CC-G-G--ACTATAT--CGA-ATTT-GT-A-A-ATGG--GTC-AAAATAACT-AATAAAAA
Reference ( gi|2 ) : CAAAAAT-CTCAATTTG-TCAAA-CCTTTAAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GC-A---TA-TCTCACTACA-AAG-A-A--ATCTTTT-T-AAT-AAATA----ATCTG-A----A--A--TG-C--TTTAA-GTA---T-G-TCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT---CA----A-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCTG-CCGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG--TAT-CGA-----TATT-GT-C-TGA-C--CC-G-G--AATATAT--CGA-ATTT-GT-A-A-ATGG--GTC-AAGATAACT-ATTAAAAA
gi|3 : CAAAAAT-CTCAATTTG-TCAAA-CCTTTAAATCA-CA-CTTGAAATT-TACATGTT-CTG-TTATTAA--GAAAA--GC-AA--TA-TCTCACTACA-AAG-A-A--ATATTTT-T-AAT-AAATN----NNNNN-NTCACA--A--TGTC--GTTTA-TTA---C-T-TCA--------TAAA---TCAT--G------------T--------CT---AN----A-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCTG-CCGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TGT-TAT-CGA-----TATT-GT-C-TGA-C--CC-G-G--AATATAT--CGA-ATTT-GT-A-A-ATGG--GTC-AAGATAACT-AATAAAAA
gi|1 : CAGAAA--CTCAATTTG-TCAAA-ACCTTAAATAAACA-CTTGAAATTGTACATGT--CTG-TTTTTAATTGAAAA--GC-AA--TA-TCTCAATACATAAC-ACA--GTCTTTT-T-AAT-AAATT----ATTTGAA----A--A--TG-C--TTT-A-GTA---T-G-TCAAGCA--TGTAAA---TTAT--AT-----------T-G-----ACT---TA----A-TCGATT-ATA-TTTCCACAAT-GTC--GT---T---------------TA------------------ATATCTA-CCATA-TA-TGC--------CATGATGTCATAA-A-T-TTGCT--------TTAT-GTC-TGT-TATCCGA-----TATT-GTCC-TGA-C--CC-G-G--ACTATAT--CGA-GTTT-GA-A-A-ATGG--GTC-AA-ACAACT-A-TAAAAa
gi|11 : gattcgttgcaagagtCAGAAAT-ATCGATTTG-TCAAA-ACCTTAAATCA-CA-CTTAAAATT-TAAAT-TTTCTG-TTATATA--GAAAA--GCAA---CAGTCT-GCTACA-AAC-A-C--ATCTTTT-T-GAT-AGATT----ATCTG-A----A--T--TG-C--TCGAA-GTATCTT-GTTCAAGCAATTGGAA-----TAT--A------------ttatttaaaaaaa
gi|4 : agtAAAAAT-TTCAATTTG-TCAAA-ACTT-AAATCA-AA-CTTGAAATT--ACATGTTT-TA-TTATTAA--GAAAAAGGC-AAA-TA-TCTCACTACA-AAC-A-C--ATCTTTT-T-AAT----TA----AT----------------------TAAA-GTA---T-G-TCAAGCAATTGTAAA---TTAT--A------------T-A-----ACT---TA----AATA-ATT-ATA-TTT-C-----------GT---T---------------TAT--TACTTCAGAA-AT-AATATCTA-CCATA-TATTGCCAAATGAATATGATGT-ATAAGATT-TTGCTTTATATAGTTAT-GTC-TGT-TAT-CGA-----TATT-GT-C-TGA-A--CC-G-G--ACTATAT--CGA-AATT-GT-A-T-ATGG--ATC-AAAATAACA-AATGAAAgtttctgcattttgtgtatatactttcgta
gi|6 : gagtAAGAATTCTCAATTTG-TCAAA-ACCTTAAATCA-------GAAATT-TAC-TGTT-CTG-C-ATTAA--GAAAA--GC-ACA-TA-TCTCAATACA-AAACA-AC-ATTTTTT-T-AAT-AAATT----ATCTG-A----A--A--C--C--TT--A-GTA---T-G-TCAAGCAATTGTAAA---TTATAGA------------T-G-----A------A----C-TT-ATC-ATACTTT-CACAAT-GTC--GT---T---------------TAT--TAC---------------TCTA-CCATA-TATTGC--------CATGATGT-ATAATATT-TTGCTTTT--------T-GTC-TGT-TAT-CGA-----TATT-GT-G-TAA-C--CC-G-G--ACTATAT--CGA-ATTT-GT-A-A-ATGG--GTC-AAAATAACT-AATAAGActatttataaaaa
gi|7 : gtAAAT-CTTGATTTA-TCAAA-ACTTTAAATCG-CA-CTTAAAATT-CACATG-CTCTG-TTATTAA--GAAAA--GCAA---CA-TATCGCTACA-AAC-A-C--ATATTTTGT-AAT-AAATG----ATCGG-A----A--T--TG-C--TTT-A-GTA---T-C-TCAAGCAATttaaaa
gi|10 : gAAAT-CTTAATTTAATCAAAACTTTTAAATCG-CAACTTAAAATT-CACATGT--CTGCTTATTAA--GAAAA--GC-AACCAA-TATCGCTACA-AAA-C-ACCATTTCTG-T-AATAAAATG----ATCCG-G----A--AATTG-CCGTTT-A-GTA---TCT-TCAAGCAATgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgaattataatagttcacaatgtcgttcaattttattgtgtgtatgacactaaataaatcatatctaggatgtattgccaaatgtataatattttgca
gi|8 : tg-TTTCACTACA-AAC-A-C--ATCTTT----AAT-TAATA----TTCTG-A----A--A--TG-C--TTTAAAGTA---T-T-AAAAGCAATTGTAAAATTTTAT--A------------T-GG----ACTAT-TA----A-TCCATT--TA-TTT-CACAATTGTC--GT---T----------------AT---ATTTCATAA-ATTCATATCTGACCATAGTATTGCCAAATACACAAGATGT-ATAATCAT-TTGCTTTATATAGTTATGGTCTTGTTTAT-CGA-----TATT-GT-C-TGA-C--CCGG-G--AATATAT--CGA-ATTT-GTAA-A-ATGG--GTC-AAAATAATT-GATAAAgggggtaatactttctgctttcagcgcatatactttaatatgatatgttatgattaata
gi|5 : CACCATA-AAA-T-A--ATCCTTG-TGAAT-TGATATGCCATCTT-T----ATCA--TG-A--ACTAA-ATA---T-C-TCAAGCAATTGGAA-----TAT--AGTTTCTGCTTTCT-GTTTATACTTTTCATGTGA-TC-ATA-ATA-TTT-CACAAT-GTC--GTGATT---------------CAT--CACTTCATAA-AC-CATATCTA-CCATA-CATTGCTAAATGCACATGATGT-ATAGTATT-TTGC---AAATAGTTAT-GTC-T---TAT-CGA-----TATT-GT-C-TGA-C--CC-G-G--ACTATAT--CGA-ATTT-GT-A-A-ATGG--GTC-AAAATAACT-AGTAAcattattaaaaaaa
gi|9 : caaaagtccgtcaaggtttcaaaa----ATCTG-A----A--T--TG-C--TCGAA-GTATCTT-GTTCAAGCAATTGGAA-----TAT--A------------
gi|14 : tAAA---TGAT--A------------T-G-----ACT---TA----A----ATC-ATA-ATT-CATAAT-GTCAGGTG--T---------------TAT--TACTGCATAATCC-CATATCTA-Cgtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacatacttatgtctgtttcaaattcgtattgtttgacccggacttcatgaaattcaaatcaatgtccaaata
gi|12 : agtatctcaagcaattgcgaatatagttcgcttcctgtactttcacatgttttataA---TAAT--A------------TAG-----ACT---TA----A-TC-ATTTATA-TTT-CACAAT-GTCG-GT---T---------------TAT--TACCT-AT---------------CCATA-TA-TGC--------CATGATGT-AT-ATATTATTGCTTTCgcat
gi|7 : A----A-TT-ATA-ATA-GTT-CACAAT-GTC--GT---TCAATTTTATTGTGTGTATGACACTAAATAA-AT-CATATCTA-GGATG-TATTGCCAAATG---------T-ATAATATT-TTGCgtctgaaatgggttcaaaatagaccaataaaattatataagttttacaataaaaaaaaaaaaatataaaaaaagtat
gi|15 : gaaatcttgatttatcaaaactttaaatcgcacttaaaattcacatgctctgttattaagaaaagcaacatatcgctacaaacacatattttgtaataaatgatcggaattgctttagtatctcaagcaatgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgGCCAAATGCACAAGACG--ATAATATT-TTAC-ATCAAGTGTCAT-GTC-TGT-TAT-CGA-----TATT-CT-T-TGACC--CC-G-G--AGTATAC--CT--ATTT-GT-AGA-ATGA--GTT-AAAATAGCT-Aa
gi|9 : ATACTTAT-GTC-TG--TTT-CAAATTCGTATT-GT-T-TGA-C--CC-G-G--ACTTCAT--GAA-ATTa
gi|13 : tatctgaattgctcgaagtatcttgttcaagcaattggaatatagtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacTTAT-GTC-TG--TTA-CGA-----TATTGGT-CATGA-CCGCC-GCGCTAACATAT--CGA-A-TT-GT-A-AGAT-G--GTCAAAGAT-ACT-AATATAAcaaatcaatgtccaaata
gi|16 : tctaccattaggccaggatggtatacattgcA-C--CT-G-G--ACTATATTGCGATATTTTGT-A-A-ATGGGTGTC-AAAATAACTAATTAAAgaattaggtattaaaaaaatta
Alignments
lowQualScore : 11 111111 111 11 22222 1111 33333333333333333333 1111111111111111 2222222222222222222 11111111 11111
lowQualScore : 5 2 5 4 5 77 5 55 22 5 66 66 000000 4 0 8 4 777 4 4 1 4 88888888 4 55 00 3 00000 0000 55 55555555555555555555 5555555555555555 4 4 4 4 99 7777777777777777777 999 33 0 9999 4 4 4 1 44444444 4 4 99 1 4 4 4 4 00000 4 4 4 3 55 3 666 55 3 3 3 3 3 55 55 3
lowQualScore : . . . . . .. . .. .. . .. .. ...... . . . . ... . . . . ........ . .. .. . ..... .... .. .................... ................ . . . . .. ................... ... .. . .... . . . . ........ . . .. . . . . . ..... . . . . .. . ... .. . . . . . .. .. .
lowQualScore : 0 0 0 2 0 00 0 99 55 0 99 99 666666 4 7 9 4 777 4 4 0 0 66666666 0 55 99 6 11111 7777 00 11111111111111111111 9999999999999999 0 0 0 0 55 0000000000000000000 444 33 7 8888 0 0 4 9 66666666 0 0 44 8 0 0 0 0 00000 0 0 0 6 00 6 444 00 6 6 6 6 6 00 00 6
consensus : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AACA-C-ATCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
Reference ( family-2244 ) : CAAAAAT-CTCGATTTG-TCAAAACCTT-AAATCG-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AACA-A-ATCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTNAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
gi|1 : CAGAAA--CTCAATTTG-TCAAAACCTT-AAATAAACA-CTTGAAATTGTACATGT--CTG-TTTTTAATTGAAAA--GCA-A-T--A-TCTCAATAC-ATAACACA-GTCTTTT-TAAT-AAATTATTTGAA----AA--TG-C--TTT-A-GTAT----GTCAAGCA--TGTAAA---TTAT--AT-----------T-G-----ACT--T-------AA-TCGATT-ATA-TTTCCACAAT-GTC--GT---T---------------TA------------------ATATCT-AC-CATA-TA-TGC--------CATGATGTCATAA-A-T-TTGCT--------TTAT-GTC-TG-TTATCCGA-----TATT-GTCC-TGA-C--CC-GGACT---ATAT--CGA-GTTT-GA-A-A-AT--GGGT--C-AA-ACAACT-ATAAAA
gi|10 : gattcgttgcaagagtAAAT-CTTAATTTAATCAAAACTTTTAAATCG-CAACTTAAAATT-CACATGT--CTGCTTATTAA--GAAAA--GCA-A-CCAA-TATCGCTACAA-AACACC-ATTTCTG-TAATAAAATGATCCG-G----AAATTG-CCGTTT-A-GTATC---TTCAAGCAATttatttaaaaaaa
gi|11 : tgCAGAAAT-ATCGATTTG-TCAAAACCTT-AAATCA-CA-CTTAAAATT-TAAAT-TTTCTG-TTATATA--GAAAA--GCA-A-C--AGTCT-GCTAC-A-AACA-C-ATCTTTT-TGAT-AGATTATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------gggggtaatactttctgctttcagcgcatatactttaatatgatatgttatgattaata
gi|12 : agtA---TAAT--A------------TAG-----ACT--T-------AA-TC-ATTTATA-TTT-CACAAT-GTCG-GT---T---------------TAT--TACCT-AT---------------C-CATA-TA-TGC--------CATGATGT-AT-ATATTATTGCTTTgtttctgcattttgtgtatatactttcgta
gi|13 : TTAT-GTC-TG-TTA--CGA-----TATTGGT-CATGA-CCGCC-GCGCTAACATAT--CGA-A-TT-GT-A-AGAT---GGT--CAAAGAT-ACTAATATAAcgtctgaaatgggttcaaaatagaccaataaaattatataagttttacaataaaaaaaaaaaaatataaaaaaagtat
gi|14 : tctaccattaggccaggatggtatacattgcAAA---TGAT--A------------T-G-----ACT--T-------AA----ATC-ATA-ATT-CATAAT-GTCAGGTG--T---------------TAT--TACTGCATAATCC-CATATCT-ACGCATgaattaggtattaaaaaaatta
gi|15 : agtatctcaagcaattgcgaatatagttcgcttcctgtactttcacatgttttataGCCAAATGCACAAGACG--ATAATATT-TTACATCAAGT-GTCAT-GTC-TG-TTAT-CGA-----TATT-CT-T-TGACC--CC-GGAGT---ATAC--CT--ATTT-GT-AGA-AT--GAGT--TAAA-ATAGCTAA
gi|16 : A-C--CT-GGACT---ATATTGCGATATTTTGT-A-A-AT--GGGTGTCAAA-ATAACTAATTAAA
gi|2 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA---T--A-TCTCACTAC-A-AAGA-A-ATCTTTT-TAAT-AAATAATCTG-A----AA--TG-C--TTTAA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--C-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG--TAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTATTAAAAAtattatttaaaagaaa
gi|3 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTT-CTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCACTAC-A-AAGA-A-ATATTTT-TAAT-AAATNNNNNN-NTCACAA--TGTC--GTTTA-TTAC----TTCA--------TAAA---TCAT--G------------T--------CT--A-------NA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTAATAAAAA
gi|4 : AAAAAT-TTCAATTTG-TCAAAAC-TT-AAATCA-AA-CTTGAAATT--ACATGTTT-TA-TTATTAA--GAAAAAGGCA-AAT--A-TCTCACTAC-A-AACA-C-ATCTTTT-TAAT-TAATTA-----------------------AA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-A-----ACT--T-------AAATA-ATT-ATA-TTT-C-----------GT---T---------------TAT--TACTTCAGAA-AT-AATATCT-AC-CATA-TATTGCCAAATGAATATGATGT-ATAAGATT-TTGCTTTATATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-A--CC-GGACT---ATAT--CGA-AATT-GT-A-T-AT--GGAT--CAAA-ATAACAAATGAAAa
gi|5 : gagtTAA-ATAT----CTCAAGCAATTGGAA-----TAT--AGTTTCTGCTTTCT-GTTTATACT--TTTCATGTGA-TC-ATA-ATA-TTT-CACAAT-GTC--GTGATT---------------CAT--CACTTCATAA-AC-CATATCT-AC-CATA-CATTGCTAAATGCACATGATGT-ATAGTATT-TTGC---AAATAGTTAT-GTC-T---TAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAGTAActatttataaaaa
gi|6 : caaaagtccgtcaaggtttcaaaacaccataaaataatccttgtgaattgatatgccatctttatcatgaacAAGAATTCTCAATTTG-TCAAAACCTT-AAATCA-------GAAATT-TAC-TG-TTCTG--CATTAA--GAAAA--GCACA-T--A-TCTCAATACAA-AACA-ACATTTTTT-TAAT-AAATTATCTG-A----AA--C--C--TT--A-GTAT----GTCAAGCAATTGTAAA---TTATAGA------------T-GA----ACT--T-------------ATC-ATACTTT-CACAAT-GTC--GT---T---------------TAT--TAC---------------TCT-AC-CATA-TATTGC--------CATGATGT-ATAATATT-TTGCTTTT--------T-GTC-TG-TTAT-CGA-----TATT-GT-G-TAA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAGA
gi|7 : gtAAAT-CTTGATTTA-TCAAAACTTT-AAATCG-CA-CTTAAAATT-CACATGCT-CTG-TTATTAA--GAAAA--GCA-A-C--A-TATCGCTAC-A-AACA-C-ATATTTTGTAAT-AAATGATCGG-A----AT--TG-C--TTT-A-GTAT----CTCAAGCAATttaaaa
gi|7 : g-------AA-TT-ATA-ATA-GTT-CACAAT-GTC--GT---TCAATTTTATTGTGTGTATGACACTAAATAA-AT-CATATCT-AG-GATG-TATTGCCAA---------ATGT-ATAATATT-TTGCgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgaattataatagttcacaatgtcgttcaattttattgtgtgtatgacactaaataaatcatatctaggatgtattgccaaatgtataatattttgca
gi|8 : gaaatcttgatttatcaaaactttaaatcgcacttaaaattcacatgctctgttattaagaaaagcaacatatcgctacaaacacatattttgtaataaatgatcggaattgctttagtatctcaagcaatgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatg-TTTCACTAC-A-AACA-C-ATCTTT---AAT-TAATATTCTG-A----AA--TG-C--TTTAAAGTAT----TAAAAGCAATTGTAAAATTTTAT--A------------T-GG----ACTATT-------AA-TCCATT--TA-TTT-CACAATTGTC--GT---T----------------AT---ATTTCATAA-ATTCATATCTGAC-CATAGTATTGCCAAATACACAAGATGT-ATAATCAT-TTGCTTTATATAGTTATGGTCTTGTTTAT-CGA-----TATT-GT-C-TGA-C--CCGGGAAT---ATAT--CGA-ATTT-GTAA-A-AT--GGGT--CAAA-ATAATTGATAAAa
gi|9 : ATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------cattattaaaaaaa
gi|9 : tATACTTAT-GTC-TG-TT-T-CAAATTCGTATT-GT-T-TGA-C--CC-GGACT---TCAT--GAA-ATT---C-A-A-ATCAATGT--CCAA-ATAgtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacatacttatgtctgtttcaaattcgtattgtttgacccggacttcatgaaattcaaatcaatgtccaaata
Alignments
lowQualScore : 11 111111 11 22222 1111 33333333333333333333 1111111111111111 2222222222222222222 11111111 11111
lowQualScore : 5 5 4 5 5 5 55 22 5 66 66 000000 4 0 8 4 4 4 4 4 4 1 4 88888888 4 55 00 3 00000 0000 55 55555555555555555555 5555555555555555 4 4 4 4 99 7777777777777777777 999 33 0 9999 4 4 4 1 44444444 4 4 99 4 4 4 4 4 00000 4 4 4 3 55 3 666 55 3 3 3 3 3 55 55 3
lowQualScore : . . . . . . .. .. . .. .. ...... . . . . . . . . . . . ........ . .. .. . ..... .... .. .................... ................ . . . . .. ................... ... .. . .... . . . . ........ . . .. . . . . . ..... . . . . .. . ... .. . . . . . .. .. .
lowQualScore : 0 0 2 0 0 0 99 55 0 99 99 666666 4 7 9 4 4 4 4 4 4 0 0 66666666 0 55 99 6 11111 7777 00 11111111111111111111 9999999999999999 0 0 0 0 55 0000000000000000000 444 33 7 8888 0 0 4 9 66666666 0 0 22 6 0 0 0 0 00000 0 0 0 6 00 6 444 00 6 6 6 6 6 00 00 6
consensus : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
Reference ( family-2244 ) : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
gi|1 : CAGAAA--CTCAATTTG-TCAAAACCTT-AAATAAACA-CTTGAAATTGTACATGT--CTG-TTTTTAATTGAAAA--GCA-A-T--A-TCTCAATAC-ATAAC-A-CAGTCTTTT-TAAT-AAATTATTTGAA----AA--TG-C--TTT-A-GTAT----GTCAAGCA--TGTAAA---TTAT--AT-----------T-G-----ACT--T-------AA-TCGATT-ATA-TTTCCACAAT-GTC--GT---T---------------TA------------------ATATCT-AC-CATA-TA-TGC--------CATGATGTCATAA-A-T-TTGCT--------TTAT-GTC-TG-TTATCCGA-----TATT-GTCC-TGA-C--CC-GGACT---ATAT--CGA-GTTT-GA-A-A-AT--GGGT--C-AA-ACAACT-ATAAAA
gi|10 : gattcgttgcaagagtAAAT-CTTAATTTAATCAAAACTTTTAAATCG-CAACTTAAAATT-CACATGT--CTGCTTATTAA--GAAAA--GCA-A-CCAA-TATCGCTACAA-AAC-ACCA-TTTCTG-TAATAAAATGATCCG-G----AAATTG-CCGTTT-A-GTATC---TTCAAGCAATttatttaaaaaaa
gi|11 : tgCAGAAAT-ATCGATTTG-TCAAAACCTT-AAATCA-CA-CTTAAAATT-TAAAT-TTTCTG-TTATATA--GAAAA--GCA-A-C--AGTCT-GCTAC-A-AAC-A-CA-TCTTTT-TGAT-AGATTATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------gggggtaatactttctgctttcagcgcatatactttaatatgatatgttatgattaata
gi|12 : agtA---TAAT--A------------TAG-----ACT--T-------AA-TC-ATTTATA-TTT-CACAAT-GTCG-GT---T---------------TAT--TACCT-AT---------------C-CATA-TA-TGC--------CATGATGT-AT-ATATTATTGCTTTgtttctgcattttgtgtatatactttcgta
gi|13 : TTAT-GTC-TG-TTA--CGA-----TATTGGT-CATGA-CCGCC-GCGCTAACATAT--CGA-A-TT-GT-A-AGAT---GGT--CAAAGAT-ACTAATATAAcgtctgaaatgggttcaaaatagaccaataaaattatataagttttacaataaaaaaaaaaaaatataaaaaaagtat
gi|14 : tctaccattaggccaggatggtatacattgcAAA---TGAT--A------------T-G-----ACT--T-------AA----ATC-ATA-ATT-CATAAT-GTCAGGTG--T---------------TAT--TACTGCATAATCC-CATATCT-ACGCATgaattaggtattaaaaaaatta
gi|15 : agtatctcaagcaattgcgaatatagttcgcttcctgtactttcacatgttttataGCCAAATGCACAAGACG--ATAATATT-TTACATCAAGT-GTCAT-GTC-TG-TTAT-CGA-----TATT-CT-T-TGACC--CC-GGAGT---ATAC--CT--ATTT-GT-AGA-AT--GAGT--TAAA-ATAGCTAA
gi|16 : A-C--CT-GGACT---ATATTGCGATATTTTGT-A-A-AT--GGGTGTCAAA-ATAACTAATTAAA
gi|2 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA---T--A-TCTCACTAC-A-AAG-A-AA-TCTTTT-TAAT-AAATAATCTG-A----AA--TG-C--TTTAA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--C-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG--TAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTATTAAAAAtattatttaaaagaaa
gi|3 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTT-CTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCACTAC-A-AAG-A-AA-TATTTT-TAAT-AAATNNNNNN-NTCACAA--TGTC--GTTTA-TTAC----TTCA--------TAAA---TCAT--G------------T--------CT--A-------NA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTAATAAAAA
gi|4 : AAAAAT-TTCAATTTG-TCAAAAC-TT-AAATCA-AA-CTTGAAATT--ACATGTTT-TA-TTATTAA--GAAAAAGGCA-AAT--A-TCTCACTAC-A-AAC-A-CA-TCTTTT-TAAT-TAATTA-----------------------AA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-A-----ACT--T-------AAATA-ATT-ATA-TTT-C-----------GT---T---------------TAT--TACTTCAGAA-AT-AATATCT-AC-CATA-TATTGCCAAATGAATATGATGT-ATAAGATT-TTGCTTTATATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-A--CC-GGACT---ATAT--CGA-AATT-GT-A-T-AT--GGAT--CAAA-ATAACAAATGAAAa
gi|5 : gagtTAA-ATAT----CTCAAGCAATTGGAA-----TAT--AGTTTCTGCTTTCT-GTTTATACT--TTTCATGTGA-TC-ATA-ATA-TTT-CACAAT-GTC--GTGATT---------------CAT--CACTTCATAA-AC-CATATCT-AC-CATA-CATTGCTAAATGCACATGATGT-ATAGTATT-TTGC---AAATAGTTAT-GTC-T---TAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAGTAActatttataaaaa
gi|6 : caaaagtccgtcaaggtttcaaaacaccataaaataatccttgtgaattgatatgccatctttatcatgaacAAGAATTCTCAATTTG-TCAAAACCTT-AAATCA-------GAAATT-TAC-TG-TTCTG--CATTAA--GAAAA--GCACA-T--A-TCTCAATACAA-AACAA-CA-TTTTTT-TAAT-AAATTATCTG-A----AA--C--C--TT--A-GTAT----GTCAAGCAATTGTAAA---TTATAGA------------T-GA----ACT--T-------------ATC-ATACTTT-CACAAT-GTC--GT---T---------------TAT--TAC---------------TCT-AC-CATA-TATTGC--------CATGATGT-ATAATATT-TTGCTTT---T-----T-GTC-TG-TTAT-CGA-----TATT-GT-G-TAA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAGA
gi|7 : gtAAAT-CTTGATTTA-TCAAAACTTT-AAATCG-CA-CTTAAAATT-CACATGCT-CTG-TTATTAA--GAAAA--GCA-A-C--A-TATCGCTAC-A-AAC-A-CA-TATTTTGTAAT-AAATGATCGG-A----AT--TG-C--TTT-A-GTAT----CTCAAGCAATttaaaa
gi|7 : g-------AA-TT-ATA-ATA-GTT-CACAAT-GTC--GT---TCAATTTTATTGTGTGTATGACACTAAATAA-AT-CATATCT-AG-GATG-TATTGCCAA---------ATGT-ATAATATT-TTGCgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgaattataatagttcacaatgtcgttcaattttattgtgtgtatgacactaaataaatcatatctaggatgtattgccaaatgtataatattttgca
gi|8 : gaaatcttgatttatcaaaactttaaatcgcacttaaaattcacatgctctgttattaagaaaagcaacatatcgctacaaacacatattttgtaataaatgatcggaattgctttagtatctcaagcaatgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatg-TTTCACTAC-A-AAC-A-CA-TCTTT---AAT-TAATATTCTG-A----AA--TG-C--TTTAAAGTAT----TAAAAGCAATTGTAAAATTTTAT--A------------T-GG----ACTATT-------AA-TCCATT--TA-TTT-CACAATTGTC--GT---T----------------AT---ATTTCATAA-ATTCATATCTGAC-CATAGTATTGCCAAATACACAAGATGT-ATAATCAT-TTGCTTTATATAGTTATGGTCTTGTTTAT-CGA-----TATT-GT-C-TGA-C--CCGGGAAT---ATAT--CGA-ATTT-GTAA-A-AT--GGGT--CAAA-ATAATTGATAAAa
gi|9 : ATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------cattattaaaaaaa
gi|9 : tTACATACTTAT-GTC-TG-TT-T-CAAATTCGTATT-GT-T-TGA-C--CC-GGACT---TCAT--GAA-ATT---C-A-A-ATCAATGT--CCAA-ATAgtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacatacttatgtctgtttcaaattcgtattgtttgacccggacttcatgaaattcaaatcaatgtccaaata
Alignments
lowQualScore : 11 111111 11 22222 1111 33333333333333333333 1111111111111111 2222222222222222222 11111111 11111
lowQualScore : 5 5 4 5 5 5 55 22 5 66 66 000000 4 0 8 4 4 4 4 4 4 1 4 88888888 4 55 00 3 00000 0000 55 55555555555555555555 5555555555555555 4 4 4 4 99 7777777777777777777 999 33 0 9999 4 4 4 1 44444444 4 4 99 4 4 4 4 4 00000 4 4 4 3 55 3 666 55 3 3 3 3 3 55 55 3
lowQualScore : . . . . . . .. .. . .. .. ...... . . . . . . . . . . . ........ . .. .. . ..... .... .. .................... ................ . . . . .. ................... ... .. . .... . . . . ........ . . .. . . . . . ..... . . . . .. . ... .. . . . . . .. .. .
lowQualScore : 0 0 2 0 0 0 99 55 0 99 99 666666 4 7 9 4 4 4 4 4 4 0 0 66666666 0 55 99 6 11111 7777 00 11111111111111111111 9999999999999999 0 0 0 0 55 0000000000000000000 444 33 7 8888 0 0 4 9 66666666 0 0 22 6 0 0 0 0 00000 0 0 0 6 00 6 444 00 6 6 6 6 6 00 00 6
consensus : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
Reference ( family-2244 ) : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
gi|1 : CAGAAA--CTCAATTTG-TCAAAACCTT-AAATAAACA-CTTGAAATTGTACATGT--CTG-TTTTTAATTGAAAA--GCA-A-T--A-TCTCAATAC-ATAAC-A-CAGTCTTTT-TAAT-AAATTATTTGAA----AA--TG-C--TTT-A-GTAT----GTCAAGCA--TGTAAA---TTAT--AT-----------T-G-----ACT--T-------AA-TCGATT-ATA-TTTCCACAAT-GTC--GT---T---------------TA------------------ATATCT-AC-CATA-TA-TGC--------CATGATGTCATAA-A-T-TTGCT--------TTAT-GTC-TG-TTATCCGA-----TATT-GTCC-TGA-C--CC-GGACT---ATAT--CGA-GTTT-GA-A-A-AT--GGGT--C-AA-ACAACT-ATAAAA
gi|10 : gattcgttgcaagagtAAAT-CTTAATTTAATCAAAACTTTTAAATCG-CAACTTAAAATT-CACATGT--CTGCTTATTAA--GAAAA--GCA-A-CCAA-TATCGCTACAA-AAC-ACCA-TTTCTG-TAATAAAATGATCCG-G----AAATTG-CCGTTT-A-GTATC---TTCAAGCAATttatttaaaaaaa
gi|11 : tgCAGAAAT-ATCGATTTG-TCAAAACCTT-AAATCA-CA-CTTAAAATT-TAAAT-TTTCTG-TTATATA--GAAAA--GCA-A-C--AGTCT-GCTAC-A-AAC-A-CA-TCTTTT-TGAT-AGATTATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------gggggtaatactttctgctttcagcgcatatactttaatatgatatgttatgattaata
gi|12 : agtA---TAAT--A------------TAG-----ACT--T-------AA-TC-ATTTATA-TTT-CACAAT-GTCG-GT---T---------------TAT--TACCT-AT---------------C-CATA-TA-TGC--------CATGATGT-AT-ATATTATTGCTTTgtttctgcattttgtgtatatactttcgta
gi|13 : TTAT-GTC-TG-TTA--CGA-----TATTGGT-CATGA-CCGCC-GCGCTAACATAT--CGA-A-TT-GT-A-AGAT---GGT--CAAAGAT-ACTAATATAAcgtctgaaatgggttcaaaatagaccaataaaattatataagttttacaataaaaaaaaaaaaatataaaaaaagtat
gi|14 : tctaccattaggccaggatggtatacattgcAAA---TGAT--A------------T-G-----ACT--T-------AA----ATC-ATA-ATT-CATAAT-GTCAGGTG--T---------------TAT--TACTGCATAATCC-CATATCT-ACGCATgaattaggtattaaaaaaatta
gi|15 : agtatctcaagcaattgcgaatatagttcgcttcctgtactttcacatgttttataGCCAAATGCACAAGACG--ATAATATT-TTACATCAAGT-GTCAT-GTC-TG-TTAT-CGA-----TATT-CT-T-TGACC--CC-GGAGT---ATAC--CT--ATTT-GT-AGA-AT--GAGT--TAAA-ATAGCTAA
gi|16 : A-C--CT-GGACT---ATATTGCGATATTTTGT-A-A-AT--GGGTGTCAAA-ATAACTAATTAAA
gi|2 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA---T--A-TCTCACTAC-A-AAG-A-AA-TCTTTT-TAAT-AAATAATCTG-A----AA--TG-C--TTTAA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--C-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG--TAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTATTAAAAAtattatttaaaagaaa
gi|3 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTT-CTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCACTAC-A-AAG-A-AA-TATTTT-TAAT-AAATNNNNNN-NTCACAA--TGTC--GTTTA-TTAC----TTCA--------TAAA---TCAT--G------------T--------CT--A-------NA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTAATAAAAA
gi|4 : AAAAAT-TTCAATTTG-TCAAAAC-TT-AAATCA-AA-CTTGAAATT--ACATGTTT-TA-TTATTAA--GAAAAAGGCA-AAT--A-TCTCACTAC-A-AAC-A-CA-TCTTTT-TAAT-TAATTA-----------------------AA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-A-----ACT--T-------AAATA-ATT-ATA-TTT-C-----------GT---T---------------TAT--TACTTCAGAA-AT-AATATCT-AC-CATA-TATTGCCAAATGAATATGATGT-ATAAGATT-TTGCTTTATATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-A--CC-GGACT---ATAT--CGA-AATT-GT-A-T-AT--GGAT--CAAA-ATAACAAATGAAAa
gi|5 : gagtTAA-ATAT----CTCAAGCAATTGGAA-----TAT--AGTTTCTGCTTTCT-GTTTATACT--TTTCATGTGA-TC-ATA-ATA-TTT-CACAAT-GTC--GTGATT---------------CAT--CACTTCATAA-AC-CATATCT-AC-CATA-CATTGCTAAATGCACATGATGT-ATAGTATT-TTGC---AAATAGTTAT-GTC-T---TAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAGTAActatttataaaaa
gi|6 : caaaagtccgtcaaggtttcaaaacaccataaaataatccttgtgaattgatatgccatctttatcatgaacAAGAATTCTCAATTTG-TCAAAACCTT-AAATCA-------GAAATT-TAC-TG-TTCTG--CATTAA--GAAAA--GCACA-T--A-TCTCAATACAA-AACAA-CA-TTTTTT-TAAT-AAATTATCTG-A----AA--C--C--TT--A-GTAT----GTCAAGCAATTGTAAA---TTATAGA------------T-GA----ACT--T-------------ATC-ATACTTT-CACAAT-GTC--GT---T---------------TAT--TAC---------------TCT-AC-CATA-TATTGC--------CATGATGT-ATAATATT-TTGCTTT---T-----T-GTC-TG-TTAT-CGA-----TATT-GT-G-TAA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAGA
gi|7 : gtAAAT-CTTGATTTA-TCAAAACTTT-AAATCG-CA-CTTAAAATT-CACATGCT-CTG-TTATTAA--GAAAA--GCA-A-C--A-TATCGCTAC-A-AAC-A-CA-TATTTTGTAAT-AAATGATCGG-A----AT--TG-C--TTT-A-GTAT----CTCAAGCAATttaaaa
gi|7 : g-------AA-TT-ATA-ATA-GTT-CACAAT-GTC--GT---TCAATTTTATTGTGTGTATGACACTAAATAA-AT-CATATCT-AG-GATG-TATTGCCAA---------ATGT-ATAATATT-TTGCgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgaattataatagttcacaatgtcgttcaattttattgtgtgtatgacactaaataaatcatatctaggatgtattgccaaatgtataatattttgca
gi|8 : gaaatcttgatttatcaaaactttaaatcgcacttaaaattcacatgctctgttattaagaaaagcaacatatcgctacaaacacatattttgtaataaatgatcggaattgctttagtatctcaagcaatgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatg-TTTCACTAC-A-AAC-A-CA-TCTTT---AAT-TAATATTCTG-A----AA--TG-C--TTTAAAGTAT----TAAAAGCAATTGTAAAATTTTAT--A------------T-GG----ACTATT-------AA-TCCATT--TA-TTT-CACAATTGTC--GT---T----------------AT---ATTTCATAA-ATTCATATCTGAC-CATAGTATTGCCAAATACACAAGATGT-ATAATCAT-TTGCTTTATATAGTTATGGTCTTGTTTAT-CGA-----TATT-GT-C-TGA-C--CCGGGAAT---ATAT--CGA-ATTT-GTAA-A-AT--GGGT--CAAA-ATAATTGATAAAa
gi|9 : ATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------cattattaaaaaaa
gi|9 : tTACATACTTAT-GTC-TG-TT-T-CAAATTCGTATT-GT-T-TGA-C--CC-GGACT---TCAT--GAA-ATT---C-A-A-ATCAATGT--CCAA-ATAgtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacatacttatgtctgtttcaaattcgtattgtttgacccggacttcatgaaattcaaatcaatgtccaaata
blockSeqs : T A T T . A C TT C . AG ACCA G A . A C . G A G . TCACAA T CG GA A CTTGT AATT AG GTTTCTGCTTTCTGTTTAT TTTCATGTGATC T C . T AG TCAATTTTATTGTGTG GAC GC TCC G G G T CAAATGCA . A AA A G T T . ATTCG G . A C CG G AAC TG T T A G G CA GT G
blockSeqs : . . C . . . T TT . . . AAT . A . . . . . . T . AAAT . . TA . CTTGT A . TAG ATTAATCC . . . . G GATT T TC ATT . . . T CAAATGTA . . CA A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . T TT . . . CAT . . . . . . . . A . AT . . TT . CT A . TGA TAAATA . . . . . GT T TC AT . . . T CAAATGTA . . CA A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . T TT . . . AC . . . . . . . . N . AA . . TA . G A . TGG TAATC . . . . . T C TC AT . . . T CAAATGAA . . AT A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . T T . . . AT . . . . . . . . T . AA . . TA . T A . TG CAATC . . . . . T C TC AT . . . T TAAATGCA . . AA A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . C T . . . AC . . . . . . . . T . AT . . GA . G A . TG ANATC . . . . . T T AA AC . . . T CAAATACA . . AT A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . G . AA . . T . C A . TA TAA . . . . . T C TC AT . . . T CAA . . AC . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . AT . . A . G . . T T . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . C . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . .
blockSeqCons : T* TT ** TA TAATC*********** C** TC AT** CAAATGCA AA
originalCons : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
finalCons : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATTT-ACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACTTAATC-----------ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TATC--ACTTCATAAAT--CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
Alignments
lowQualScore : 11 111111 11 22222 1111 33333333333333333333 1111111111111111 2222222222222222222 11111111 11111
lowQualScore : 5 5 4 5 5 5 55 22 5 66 66 000000 4 0 8 4 4 4 4 4 4 1 4 88888888 4 55 00 3 00000 0000 55 55555555555555555555 5555555555555555 4 4 4 4 99 7777777777777777777 999 33 0 9999 4 4 4 1 44444444 4 4 99 4 4 4 4 4 00000 4 4 4 3 55 3 666 55 3 3 3 3 3 55 55 3
lowQualScore : . . . . . . .. .. . .. .. ...... . . . . . . . . . . . ........ . .. .. . ..... .... .. .................... ................ . . . . .. ................... ... .. . .... . . . . ........ . . .. . . . . . ..... . . . . .. . ... .. . . . . . .. .. .
lowQualScore : 0 0 2 0 0 0 99 55 0 99 99 666666 4 7 9 4 4 4 4 4 4 0 0 66666666 0 55 99 6 11111 7777 00 11111111111111111111 9999999999999999 0 0 0 0 55 0000000000000000000 444 33 7 8888 0 0 4 9 66666666 0 0 22 6 0 0 0 0 00000 0 0 0 6 00 6 444 00 6 6 6 6 6 00 00 6
consensus : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
Reference ( family-2244 ) : CAAAAAT-CTCAATTTG-TCAAAACCTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCGCTAC-A-AAC-A-CA-TCTTTT-TAAT-AAATNATCTG-A----AA--TG-C--TTTAA-GTAT----NTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--T-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATATCT-AC-CATA-TATTGCCAAATGCACATGATGT-ATAATATT-TTGCTTTAAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAAAA
gi|1 : CAGAAA--CTCAATTTG-TCAAAACCTT-AAATAAACA-CTTGAAATTGTACATGT--CTG-TTTTTAATTGAAAA--GCA-A-T--A-TCTCAATAC-ATAAC-A-CAGTCTTTT-TAAT-AAATTATTTGAA----AA--TG-C--TTT-A-GTAT----GTCAAGCA--TGTAAA---TTAT--AT-----------T-G-----ACT--T-------AA-TCGATT-ATA-TTTCCACAAT-GTC--GT---T---------------TA------------------ATATCT-AC-CATA-TA-TGC--------CATGATGTCATAA-A-T-TTGCT--------TTAT-GTC-TG-TTATCCGA-----TATT-GTCC-TGA-C--CC-GGACT---ATAT--CGA-GTTT-GA-A-A-AT--GGGT--C-AA-ACAACT-ATAAAA
gi|10 : gattcgttgcaagagtAAAT-CTTAATTTAATCAAAACTTTTAAATCG-CAACTTAAAATT-CACATGT--CTGCTTATTAA--GAAAA--GCA-A-CCAA-TATCGCTACAA-AAC-ACCA-TTTCTG-TAATAAAATGATCCG-G----AAATTG-CCGTTT-A-GTATC---TTCAAGCAATttatttaaaaaaa
gi|11 : tgCAGAAAT-ATCGATTTG-TCAAAACCTT-AAATCA-CA-CTTAAAATT-TAAAT-TTTCTG-TTATATA--GAAAA--GCA-A-C--AGTCT-GCTAC-A-AAC-A-CA-TCTTTT-TGAT-AGATTATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------gggggtaatactttctgctttcagcgcatatactttaatatgatatgttatgattaata
gi|12 : agtA---TAAT--A------------TAG-----ACT--T-------AA-TC-ATTTATA-TTT-CACAAT-GTCG-GT---T---------------TAT--TACCT-AT---------------C-CATA-TA-TGC--------CATGATGT-AT-ATATTATTGCTTTgtttctgcattttgtgtatatactttcgta
gi|13 : TTAT-GTC-TG-TTA--CGA-----TATTGGT-CATGA-CCGCC-GCGCTAACATAT--CGA-A-TT-GT-A-AGAT---GGT--CAAAGAT-ACTAATATAAcgtctgaaatgggttcaaaatagaccaataaaattatataagttttacaataaaaaaaaaaaaatataaaaaaagtat
gi|14 : tctaccattaggccaggatggtatacattgcAAA---TGAT--A------------T-G-----ACT--T-------AA----ATC-ATA-ATT-CATAAT-GTCAGGTG--T---------------TAT--TACTGCATAATCC-CATATCT-ACGCATgaattaggtattaaaaaaatta
gi|15 : agtatctcaagcaattgcgaatatagttcgcttcctgtactttcacatgttttataGCCAAATGCACAAGACG--ATAATATT-TTACATCAAGT-GTCAT-GTC-TG-TTAT-CGA-----TATT-CT-T-TGACC--CC-GGAGT---ATAC--CT--ATTT-GT-AGA-AT--GAGT--TAAA-ATAGCTAA
gi|16 : A-C--CT-GGACT---ATATTGCGATATTTTGT-A-A-AT--GGGTGTCAAA-ATAACTAATTAAA
gi|2 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTTTCTG-TTATTAA--GAAAA--GCA---T--A-TCTCACTAC-A-AAG-A-AA-TCTTTT-TAAT-AAATAATCTG-A----AA--TG-C--TTTAA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-G-----ACT--C-------AA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG--TAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTATTAAAAAtattatttaaaagaaa
gi|3 : CAAAAAT-CTCAATTTG-TCAAACCTTT-AAATCA-CA-CTTGAAATT-TACATGTT-CTG-TTATTAA--GAAAA--GCA-A-T--A-TCTCACTAC-A-AAG-A-AA-TATTTT-TAAT-AAATNNNNNN-NTCACAA--TGTC--GTTTA-TTAC----TTCA--------TAAA---TCAT--G------------T--------CT--A-------NA-TC-ATT-ATA-TTT-CACAAT-GTC--GT---T---------------TAT--CACTTCATAA-AT-CATGTCT-GC-CGTA-TATTGCCAAATGTACATGATAT-ATAATATT-TTGCTTTCAATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-C--CC-GGAAT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAG-ATAACTAATAAAAA
gi|4 : AAAAAT-TTCAATTTG-TCAAAAC-TT-AAATCA-AA-CTTGAAATT--ACATGTTT-TA-TTATTAA--GAAAAAGGCA-AAT--A-TCTCACTAC-A-AAC-A-CA-TCTTTT-TAAT-TAATTA-----------------------AA-GTAT----GTCAAGCAATTGTAAA---TTAT--A------------T-A-----ACT--T-------AAATA-ATT-ATA-TTT-C-----------GT---T---------------TAT--TACTTCAGAA-AT-AATATCT-AC-CATA-TATTGCCAAATGAATATGATGT-ATAAGATT-TTGCTTTATATAGTTAT-GTC-TG-TTAT-CGA-----TATT-GT-C-TGA-A--CC-GGACT---ATAT--CGA-AATT-GT-A-T-AT--GGAT--CAAA-ATAACAAATGAAAa
gi|5 : gagtTAA-ATAT----CTCAAGCAATTGGAA-----TAT--AGTTTCTGCTTTCT-GTTTATACT--TTTCATGTGA-TC-ATA-ATA-TTT-CACAAT-GTC--GTGATT---------------CAT--CACTTCATAA-AC-CATATCT-AC-CATA-CATTGCTAAATGCACATGATGT-ATAGTATT-TTGC---AAATAGTTAT-GTC-T---TAT-CGA-----TATT-GT-C-TGA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAGTAActatttataaaaa
gi|6 : caaaagtccgtcaaggtttcaaaacaccataaaataatccttgtgaattgatatgccatctttatcatgaacAAGAATTCTCAATTTG-TCAAAACCTT-AAATCA-------GAAATT-TAC-TG-TTCTG--CATTAA--GAAAA--GCACA-T--A-TCTCAATACAA-AACAA-CA-TTTTTT-TAAT-AAATTATCTG-A----AA--C--C--TT--A-GTAT----GTCAAGCAATTGTAAA---TTATAGA------------T-GA----ACT--T-------------ATC-ATACTTT-CACAAT-GTC--GT---T---------------TAT--TAC---------------TCT-AC-CATA-TATTGC--------CATGATGT-ATAATATT-TTGCTTT---T-----T-GTC-TG-TTAT-CGA-----TATT-GT-G-TAA-C--CC-GGACT---ATAT--CGA-ATTT-GT-A-A-AT--GGGT--CAAA-ATAACTAATAAGA
gi|7 : gtAAAT-CTTGATTTA-TCAAAACTTT-AAATCG-CA-CTTAAAATT-CACATGCT-CTG-TTATTAA--GAAAA--GCA-A-C--A-TATCGCTAC-A-AAC-A-CA-TATTTTGTAAT-AAATGATCGG-A----AT--TG-C--TTT-A-GTAT----CTCAAGCAATttaaaa
gi|7 : g-------AA-TT-ATA-ATA-GTT-CACAAT-GTC--GT---TCAATTTTATTGTGTGTATGACACTAAATAA-AT-CATATCT-AG-GATG-TATTGCCAA---------ATGT-ATAATATT-TTGCgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatgaattataatagttcacaatgtcgttcaattttattgtgtgtatgacactaaataaatcatatctaggatgtattgccaaatgtataatattttgca
gi|8 : gaaatcttgatttatcaaaactttaaatcgcacttaaaattcacatgctctgttattaagaaaagcaacatatcgctacaaacacatattttgtaataaatgatcggaattgctttagtatctcaagcaatgggggtatagtttctgctttcagcgtatatactttaatgggatgttttatg-TTTCACTAC-A-AAC-A-CA-TCTTT---AAT-TAATATTCTG-A----AA--TG-C--TTTAAAGTAT----TAAAAGCAATTGTAAAATTTTAT--A------------T-GG----ACTATT-------AA-TCCATT--TA-TTT-CACAATTGTC--GT---T----------------AT---ATTTCATAA-ATTCATATCTGAC-CATAGTATTGCCAAATACACAAGATGT-ATAATCAT-TTGCTTTATATAGTTATGGTCTTGTTTAT-CGA-----TATT-GT-C-TGA-C--CCGGGAAT---ATAT--CGA-ATTT-GTAA-A-AT--GGGT--CAAA-ATAATTGATAAAa
gi|9 : ATCTG-A----AT--TG-C--TCGAA-GTATCTTGTTCAAGCAATTGGAA-----TAT--A------------cattattaaaaaaa
gi|9 : tTACATACTTAT-GTC-TG-TT-T-CAAATTCGTATT-GT-T-TGA-C--CC-GGACT---TCAT--GAA-ATT---C-A-A-ATCAATGT--CCAA-ATAgtttctgcattttgtgtatatactttcgtaatcatacgacttaaatgctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacgtatacatacttatgtctgtttcaaattcgtattgtttgacccggacttcatgaaattcaaatcaatgtccaaata