lowQualScore : 1 11 2222222222 11111 11 11 111 111 2222222 1 111 44444444444444 11111 222 2 1111 1 1 1 44444444 333333333333 11 777777777777777777777777777777777 111 333333333333 1 1 2
lowQualScore : 5 00 33 0 4 1 1111111111 22222 6 6 00 2 999 1 0 6 55 6 0 1 1 2 2 777 66 55 5 000 8 8888888 6 6 1 6 6 3 2 5 777 0 222 6 99 11111111111111 8 66666 6 000 1 0 1 3333 0 8 6 8 0 5 8 0 33333333 000000000000 88 6 77 44 666666666666666666666666666666666 777 99999 0 333333333333 3 3 3 0 3
lowQualScore : . .. .. . . . .......... ..... . . .. . ... . . . .. . . . . . . ... .. .. . ... . ....... . . . . . . . . ... . ... . .. .............. . ..... . ... . . . .... . . . . . . . . ........ ............ .. . .. .. ................................. ... ..... . ............ . . . . .
lowQualScore : 0 22 88 8 6 0 4444444444 77777 7 7 33 5 555 0 7 7 33 7 7 0 7 2 2 888 11 22 7 111 3 3333333 7 7 7 7 7 0 3 7 999 1 888 7 22 88888888888888 7 77777 7 777 7 0 4 2222 8 0 8 0 6 0 0 0 00000000 333333333333 00 7 77 00 333333333333333333333333333333333 777 33333 7 000000000000 7 3 3 7 3
consensus : GTGCAGGCCTGGGCAG-ATNATACGGAGATCCTGGAG----TGCCCAGTCGT--CAGGATCC-CC-CTCTCNGCNTCGCTGACGN-GGTCCGGAGGANAGG-CAAGCCGATACGGTCGGCGTCAGC-NCGGC--TGCAGGAG-TTGCCAGAAGG-TTT-CGCAGGGNT----C--AACCAA-CCGCCTAAGG-GGCTCCA-C-TCCGGATTTTCTGTCG-GGGTGNACTCCCCTAGCCTTNNACT-CTCCCG--GGC-------------CATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATTTGGATCG-TN-GGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCGAG-TC----NCTTG-CGGTTGGGGAGGCTATGTACTGGCAGGGAGAGA-CT---------TNCNCGTTCGCG---------T--TGCT-CAAGCAGC-GTGTTAGCC-AGCGGTG-A-GCTGAAAG-CG-AGAAGT-ACAAGCAC
Reference ( gi|2 ) : GTTCAGGCCTGGGCAA-ATGATACGGAGATCCTGAAG----TGCCCAGTCGT--CAGGATCC-CC-CTCTCGGCGTTGCTGACAG-GGTCCGGCGGAGAGG-CAGGCCAATACGGTCGGTGTCAGC-GCAGC--TGCAGGAG-TTGCCAGAAGG-TTT-CGCAGGGAT----C--AACCAA-CTGCCTAAGG-GGCTCCA-C-TCCTGATTTTCTGTTG-GGGTGAACTCCCCTAGCCTTGGACT-CTCCCG--GGC-------------CATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TG-GGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTG-TAGTTAAGGGTGCTGTGTACTGGCAGGGCAAGG-CT---------TTCCCGTTCGCG---------T--TGCTGCAAGCAGCTGTGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCACC
gi|1 : GTGCAGGCCTGGGCAG-ATGATACAGAGATCCTGAAG----TGCTTAGTCGT--CAGGACCC-CC-CTCTCGGCGTTGCTGACAG-GGTCCGGCGGAGAGG-CAAGCCAATACAGTCGGTGTCAG---------TGAAGGAG-TTGTCATAAGGGTTT-TTCAGGACT----C--ATCCAA-CTGCCTAAGG-GGCTCCA-C-TCCTGATTTTCTGTTG-GGGTGAACTCCCCTAGCCTTGGACT-CTCCCG--GGC-------------CATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TG-GGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTG-TAGT
gi|8 : agGTGCAGGCCTGGGCAG-ATGA--------------AG----TGCCCAGTCGT--CAGGATCC-CC-CTCTCGGCGTTGCTGACAG-GGTCCGGCGGAGAGG-CAAGCCAATACAGTCGGTGTCCGC-GCAGC--TGCAGGAG-TTGCCAAAAGG-TTT-CGCAGGGCT----C--AACCAA-CTGCCTAAGG-GGCTCCA-C-TCCTGATTTTCTGTTG-GGGTGAACTCTCCTAGCCTTGGACT-CTCCCG--GGC-------------CATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctagcctggctatgaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|5 : gGTGCAAGCCCGGGCCTTGTAATATGGAGGAC---AAGCTGTTGCCCA--TGTAACAGG-TCC-TC-ATCTCCACGTTG-TCACTGTGATCCAAAGGAAAGT-CAAGTCAATACAGTT--TGGCAGCAGCAGCATCGTAGGAG-TTGC-AGAATA-TGT--GCTGAAGTTCAGC--AAAAAA-TCACCTTCGG-GACTCCGGC-TCAGGATTTT-TCTTG-AGATGTACTCCTGTAGCCTTa
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCAA-AGTATATGGAGATCCTGGGC----TGCCCAGTAAC--CAGGATCC-CC-CTCTCTTCCTCCCTGATGT-GTTCCAAAGGAT-CG-CAGGGCGATACGTTGGGCATCAAT-TTGTC--TGCAGtcctataaataggtggccgcaaggcagcggagcttct
gi|9 : cgcGGCCTGGGCAA-AGTATATGGAGATCCTGGGC----TGCCCAGTAAC--CAGGATCC-CCTCTCTT-TCCTCCCTGATGT-GTTCCAAAGGAT-CG-CAGGGCGAT---GTTGGCATCAGT-TTGGC--TACAGatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|14 : agggcgcCCCAGTAAA--CATGATACACC-CTCTTAGCCTTGCTGATAT-AGTCCAGAGGAATGGAAAAGCCATTGCGTCTGGTACCAGG-TTGAC--TGCAGGAG-TTGCCattattgtaggtttacctctattagcttgcctttactgaggata
gi|17 : -GCAGC--TGCAGGAA-TTGCCAGTAGG-TTT-CGCA
gi|7 : CAGC--TGCAGGAAATTGCCAGTAGG-TTTTCGCAAAGTT----A--AACCAA-CTGCCTAAGTTGGTTCCA-CATTCTG-CTTTCTGTTG-GCGTGA-CTCCCC-AGC--TGGATT-CTCCCG--GGCGGTTCTCCTGGGTCATTCACAG-GCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCT-GATCG-TG-GGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-C
gi|3 : AGC--TGCCGGA-------AGAAGG-TT---GCAAGTATG---CTAAATCAA-CCGCCTAACG-GACCCCA-C-TCTGGATTTTCTATCA-GGGTTTACTCCCTTATCCTTTTTCT-CTCCCA--AGG-------------TATCTACAAGGCAGTAAA-----GGT-ATTT-G-CCAATAGCTAGGGGTTTGGTTTG-TTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTG-C-GATGGGGAGGCTATGTACTGGCAGGGAGAGA-CT---------TACGCATTCG-GCTCTCCTTTT--TGCTTTAAA-------GCTAGCCAAACGATGTA-GCTGAAAGCCGCAGAAGT-ACAGGCActgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|11 : G-TTGCCGGAATG-TTG-CG-AGTGGT----A--AACCAATCCGCCTAACG-GAC-CCA-C-TCCGGATTTTCTTTCAAGGGTTA-CTCCT-TAGCCTTCTTCT-CTCCCG--ATT-------------AAATGACAAAGCCGTGgctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|6 : cagTTTCTGT-A-GGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAAGGT--------------ATCCACAAGGCAGTGATTTGTTGCT-ATTT-A-CCCATAGCTAGGGACTAGGATTG-CA-GGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGA
gi|4 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtctgcagaCAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTT-GGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGCCAGTTgtc
gi|1 : CTTG-TTGATGGAGAGGCTGTGTACTGGCAAGGCAAAGACT---------TGCTCGTTCGCG---------T--TGCTGCAAGCAGCTGTGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|4 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaCTTG-CGATGGAGAG-GCTA-GTA-TGGCAGGGAGAGA-CTACGCCTCGGCTCCTTTTCGCA---------TAATGC----AGCAGCGGTGTTAGC-------TG--------AAG-CG-AGAAGT-ACAAGCACacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|12 ): TGTAGGTGATGGCATGGACGGATGTAAGCCTGGACATTGCGATATGTAGGACAGGCCCTGTATTAGGTCCACCTCTCCACGCTATCGCTGTGGTCCAAAGGAAAGGCAA
Unaligned ( gi|13 ): AAGCCATGTTGCCACCATGTAGCAAGGTCCCCCTCTCTCATACTGTCGCTGTGGATCCAAAGGCAAAGGCCAAATATAGTTTTTGGCAGCAGCAGCGTCG
Unaligned ( gi|15 ): CCTGTTGCCCATGTAGCAGGTCCCTCCTCTCATACTGTCGCTGTGATCCAAAGGAAAGCCAATATAGTTTTGGCAGCAGCAGCGTCG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC
Alignments
lowQualScore : 111111 111111111 11111 1111 111 111 11 111 44444444444444444444444 11111 111 1 22222222 111 1 66666666666666666666666666666666666 1 55 1 1 2
lowQualScore : 888888 2 1 444444444 00000 3 5 5 44 9999 5 1 77 5 1 0 0 66 4444 66 4 777 5 666 555 1 0 555 5 0 5 66 1 11 88 3 555 5 88888888888888888888888 7 22222 5 444 0 3 1 6 6 6 7 6 8 2 55555555 1 444 1 0 2 0 3 1 1 6 88888888888888888888888888888888888 2 0 11 3 0 0 0
lowQualScore : ...... . . ......... ..... . . . .. .... . . .. . . . . .. .... .. . ... . ... ... . . ... . . . .. . .. .. . ... . ....................... . ..... . ... . . . . . . . . . . ........ . ... . . . . . . . . ................................... . . .. . . . .
lowQualScore : 666666 7 9 000000000 55555 2 0 0 44 8888 0 0 55 0 4 1 4 11 6666 11 4 888 0 555 777 0 7 777 7 1 0 99 4 22 44 4 222 0 44444444444444444444444 6 55555 0 777 1 3 0 7 3 7 3 7 0 0 88888888 4 888 4 8 5 0 2 0 0 5 22222222222222222222222222222222222 5 0 22 2 0 0 0
consensus : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCAGTCGT--CAGGATCC-CC-CTCTCNGC---GTCGCTGAC-GTGGTCCGGAGGAGAGGCAA-GCCGATACGGTC-GGCGTCAGCGCGGC--TGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGC---TGC--AAGCAGCTGTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
Reference ( family-2231 ) : GTGCAGGCCTGGGCA--GATNATACGGAGATC---CTGGAGTGCCCAGTCGT--CAGGATCC-CC-CTCTCNGC---NTCGCTGAC-GNGGTCCGGAGGANAGGCAA-GCCGATACGGTC-GGCGTCAGCNCGGC--TGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GNTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTNNACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATTTGGATCG-TNGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCGAG-TC----NCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTNCNCGTTCGCG---------TTGC---T-C--AAGCAGC-GTGTTAGCC-AGCGGTG--AGCTGAAAG-CG-AGAAGT-ACAAGCAC
gi|1 : GTGCAGGCCTGGGCA--GATGATACAGAGATC---CTGAAGTGCTTAGTCGT--CAGGACCC-CC-CTCTCGGC---GTTGCTGAC-AGGGTCCGGCGGAGAGGCAA-GCCAATACAGTC-GGTGTCAG--------TGAAGGAG-TTGTC---ATAAGGGTTT-TTCAGG---ACTCATCCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTGTAGTCTAGCCTGGCTATG
gi|1 : agCTTGTTGA-TGGAGAGGCTGTGTACTGGCAAGGCAAAGACTTGCTCGTTCGCG---------TTGC---TGC--AAGCAGCTGTGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|11 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaG-TTGCC---GGAATG-TTG-CG-AGT---GGTAAACCAAT--CCGCCTAACG-GAC-CCA-C--TCCGGATTTTCTTTCAAGGGT-TACT-CCTTAGCCTTCTTCT-CTCCCG---------A-------------TTAAATGACAAAGCCGTGacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|12 : cagTGTAAGCCTGGACATTG-CGATATGTAGGAC-------AG-GCCCTGT-AT--TAGG-TCC-AC-CTCTCCACGCTATCGCT----GTGGTCCAAAGGAAAGGCAA-
gi|14 : tgtaggtgatggcatggacggaCCCAGTAAA--CATGATACACC-CTCTTAGC---CTTGCTGAT-ATAGTCCAGAGGAATGGAAAAGCCATTGCGTCT-GGTACCAGGTTGAC--TGCAGGAG-TTGCC---
gi|17 : CAGC--TGCAGGAA-TTGCC---AGTAGG-TTT-CGCA
gi|2 : gGTTCAGGCCTGGGCA--AATGATACGGAGATC---CTGAAGTGCCCAGTCGT--CAGGATCC-CC-CTCTCGGC---GTTGCTGAC-AGGGTCCGGCGGAGAGGCAG-GCCAATACGGTC-GGTGTCAGCGCAGC--TGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GATCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TGGGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTGTAGT-TAAGGGTGCTGTGTACTGGCAGGG-CAAGGCTTTCCCGTTCGCG---------TTGC---TGC--AAGCAGCTGTGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|3 : AG-CTGCCGGAAGAAGG-TT---GCAAGTATGCTAAATCAA---CCGCCTAACG-GACCCCA-C--TCTGGATTTTCTATC-AGGGTTTACTCCCTTATCCTTTTTCT-CTCCCA---------A-------------GGTATCTACAAGGCAGTAAA-----GGT-ATTT-G-CCAATAGCTAGGGGTTTGGTTTGTTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTGCGA--TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACGCATTCG-GCTCTCCTTTTTGC---T-TTAAAGC--------TAGCCAAACGATGT-AGCTGAAAGCCGCAGAAGT-ACAGGCAc
gi|4 : CAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTTGGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGCgctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|4 : CTTGCGAT--GGAGAGGCTA-GTA-TGGCAGGG-AGAGAC-TACGC-CTCG-G---------CTCCTTTT-C----GCATA-ATG-CAG-C-AGCGGTGTTAGCTG-AAG-CG-AGAAGT-ACAAGCACcagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|5 : caaggcagtagagcttatttgcccatagctgggggtttggttcgtttggcaccagggcgtacccaccgcacggtggcctgcatcacacgtcctggggcaaaacgctcgtccgagtgcttgccagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggGTGCAAGCCCGGGCCTTG-TAATATGGAGGACAAGCTGT--TGCCCA--TGTAACAGG-TCC-TC-ATCTCCAC---GTTG-TCACTGTGATCCAAAGGAAAGTCAA-GTCAATACAGTTTGGCAGCAGCA--GCATCGTAGGAG-TTGC----AGAATA-TGT--GCTGAA--GTTCAGCAAAAAATCACCTTCGG-GACTCCGGC--TCAGGATTTT-TCTT-GAGATGTACTCCTGTAGCCTT-------TCCTATAAATAGGTG-------------GC----CGCAAGGCAGCGGA-----GCT-tctccaacaacttacacactagacgcatcacacggct
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCAGTAAC--CAGGATCC-CC-CTCTCTTC---CTCCCTGAT-GTGTTCCAAAGGAT-CGCAG-GGCGATACGTTG-GGCATCAATTTGTC--TGCAGtct
gi|6 : cgc-C--TGCAGATTT-CTGT--AGGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAA-------G-------------GT-ATCCACAAGGCAGTGATTTGTTGCT-ATTT--ACCCATAGCTAGGGACTAGGATTG-CAGGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGAatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|7 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtCAGC--TGCAGGAAATTGCC---AGTAGG-TTTTCGCAAA---GTTAAACCAA---CTGCCTAAGTTGGTTCCA-CATTCTG--CTTTCTGTT-GGCGTG-ACTCCCC-AGC--TGGATT-CTCCCG---------GGCGGTTCTCCTGGGTCATTCACA-GGCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCTG-ATCG-TGGGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-Cgtc
gi|8 : GTGCAGGCCTGGGCA--GATGA-----------------AGTGCCCAGTCGT--CAGGATCC-CC-CTCTCGGC---GTTGCTGAC-AGGGTCCGGCGGAGAGGCAA-GCCAATACAGTC-GGTGTCCGCGCAGC--TGCAGGAG-TTGCC---AAAAGG-TTT-CGCAGG---GCTCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCTCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|9 : gGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCAGTAAC--CAGGATCC-CCTCTCTTT-C---CTCCCTGAT-GTGTTCCAAAGGAT-CGCAG-GGCGAT---GTT-GGCATCAGTTTGGC--TACAGa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|13 ): AAGCCATGTTGCCACCATGTAGCAAGGTCCCCCTCTCTCATACTGTCGCTGTGGATCCAAAGGCAAAGGCCAAATATAGTTTTTGGCAGCAGCAGCGTCG
Unaligned ( gi|15 ): CCTGTTGCCCATGTAGCAGGTCCCTCCTCTCATACTGTCGCTGTGATCCAAAGGAAAGCCAATATAGTTTTGGCAGCAGCAGCGTCG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC
Alignments
lowQualScore : 1111 111111111 11111 11111 11 111 111 111 11 111 44444444444444444444444 11111 111 1 22222222 111 1 44444444444 11111 1 1 1 1
lowQualScore : 7777 2 1 444444444 4 44444 4 4 4 999 00000 55 0 33 4 2 1 66 66 333 00 4 777 5 666 555 1 0 555 5 0 5 66 1 11 88 3 444 5 88888888888888888888888 7 22222 5 444 0 3 1 6 6 6 7 6 8 55555555 1 444 1 0 2 0 3 1 1 6 55555555555 2 2 88888 3 2 0 1 6 3 0 0 5
lowQualScore : .... . . ......... . ..... . . . ... ..... .. . .. . . . .. .. ... .. . ... . ... ... . . ... . . . .. . .. .. . ... . ....................... . ..... . ... . . . . . . . . . ........ . ... . . . . . . . . ........... . . ..... . . . . . . . . .
lowQualScore : 6666 7 9 000000000 4 33333 8 4 4 111 66666 33 7 99 4 0 1 99 11 444 66 4 888 0 555 777 7 7 777 7 1 0 99 4 22 44 4 888 0 44444444444444444444444 6 55555 0 777 1 3 0 7 3 7 3 7 0 00000000 4 888 4 8 5 0 2 2 0 5 00000000000 5 5 55555 2 5 0 0 5 2 0 0 0
consensus : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC-NGC-G---TCGCTGAC-GTGGTCCGGAGGAGAGGCAA-GCCAATACGG--TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
Reference ( family-2231 ) : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC-NGC-G---TCGCTGAC-GTGGTCCGGAGGAGAGGCAA-GCCGATACGG--TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTGCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|1 : GTGCAGGCCTGGGCA--GATGATACAGAGATC---CTGAAGTGCTTA-GTCGT--CAGGACCC-CC-CTCTC-GGC-G---TTGCTGAC-AGGGTCCGGCGGAGAGGCAA-GCCAATACAG--TC-GGTGTCAG-------TGAAGGAG-TTGTC---ATAAGGGTTT-TTCAGG---ACTCATCCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTGTAGTCTAGCCTGGCTATG
gi|1 : agCTTGTTGA-TGGAGAGGCTGTGTACTGGCAAGGCAAAGACTTGCTCGTTCGCG---------TTGCTGCAAGCAGCT-GTGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|11 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaG-TTGCC---GGAATG-TTG-CG-AGT---GGTAAACCAAT--CCGCCTAACG-GAC-CCA-C--TCCGGATTTTCTTTCAAGGGT-TACT-CCTTAGCCTTCTTCT-CTCCCG---------A-------------TTAAATGACAAAGCCGTGacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|12 : cagTGTAAGCCTGGACATTG-CGATATGTAGGAC-------AG-GCCCT-GT-AT--TAGG-TCC-AC-CTCTC-CAC-GCTATCGCTG----TGGTCCAAAGGAAAGGCAA-
gi|14 : tgtaggtgatggcatggacggaCCCA-GTAAA--CATGATACACC-CTCTT-AGC-C---TTGCTGAT-ATAGTCCAGAGGAATGGAAAAGCCATTGCGT--CT-GGTACCAGG-TTGACTGCAGGAG-TTGCC---
gi|15 : TGCCCATGTAG---CAGGTCCC-TC-CTCTCATACTG---TCGCT----GTGATCCAAAGGA-----AA-GCCAATATAGTTTT-GGCAGCAGCAGCG
gi|17 : cctgt-GCAGCTGCAGGAA-TTGCC---AGTAGG-TTT-CGCAtcg
gi|2 : GTTCAGGCCTGGGCA--AATGATACGGAGATC---CTGAAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC-GGC-G---TTGCTGAC-AGGGTCCGGCGGAGAGGCAG-GCCAATACGG--TC-GGTGTCAGC-GCAGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GATCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TGGGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTGTAGT-TAAGGGTGCTGTGTACTGGCAGGG-CAAGGCTTTCCCGTTCGCG---------TTGCTGCAAGCAGCT-GTGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|3 : AG-CTGCCGGAAGAAGG-TT---GCAAGTATGCTAAATCAA---CCGCCTAACG-GACCCCA-C--TCTGGATTTTCTATC-AGGGTTTACTCCCTTATCCTTTTTCT-CTCCCA---------A-------------GGTATCTACAAGGCAGTAAA-----GGT-ATTT-G-CCAATAGCTAGGGGTTTGGTTTGTTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTGCGA--TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACGCATTCG-GCTCTCCTTTTTGCTTTAAA--------GCTAGCCAAACGATGTA-GCTGAAAGCCGCAGAAGT-ACAGGCAc
gi|4 : CAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTTGGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGCgctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|4 : CTTGCGAT--GGAGAGGCTA-GTA-TGGCAGGG-AGAGAC-TACGC-CTCG-G---------CTCCTTTTCGCA--TAATGC-AG-C-AGCGGTGTTAGCTG-AAG-CG-AGAAGT-ACAAGCACcagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|5 : caaggcagtagagcttatttgcccatagctgggggtttggttcgtttggcaccagggcgtacccaccgcacggtggcctgcatcacacgtcctggggcaaaacgctcgtccgagtgcttgccagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggGTGCAAGCCCGGGCCTTG-TAATATGGAGGACAAGCTGT--TGCCCA---TGTAACAGG-TCC-TC-ATCTC-CAC-G---TTG-TCACTGTGATCCAAAGGAAAGTCAA-GTCAATACAG--TTTGGCAGCAGCAGCATC-GTAGGAG-TTGC----AGAATA-TGT--GCTGAA--GTTCAGCAAAAAATCACCTTCGG-GACTCCGGC--TCAGGATTTT-TCTT-GAGATGTACTCCTGTAGCCTT-------TCCTATAAATAGGTG-------------GC----CGCAAGGCAGCGGA-----GCT-tctccaacaacttacacactagacgcatcacacggct
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CC-CTCTC-TTC-C---TCCCTGAT-GTGTTCCAAAGGAT-CGCAG-GGCGATACGT--TG-GGCATCAAT-TTGTCTGCAGtct
gi|6 : cgc-C--TGCAGATTT-CTGT--AGGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAA-------G-------------GT-ATCCACAAGGCAGTGATTTGTTGCT-ATTT--ACCCATAGCTAGGGACTAGGATTG-CAGGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGAatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|7 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtCAGCTGCAGGAAATTGCC---AGTAGG-TTTTCGCAAA---GTTAAACCAA---CTGCCTAAGTTGGTTCCA-CATTCTG--CTTTCTGTT-GGCGTG-ACTCCCC-AGC--TGGATT-CTCCCG---------GGCGGTTCTCCTGGGTCATTCACA-GGCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCTG-ATCG-TGGGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-Cgtc
gi|8 : GTGCAGGCCTGGGCA--GATGA-----------------AGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC-GGC-G---TTGCTGAC-AGGGTCCGGCGGAGAGGCAA-GCCAATACAG--TC-GGTGTCCGC-GCAGCTGCAGGAG-TTGCC---AAAAGG-TTT-CGCAGG---GCTCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCTCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|9 : gGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CCTCTCTT-T-C-C---TCCCTGAT-GTGTTCCAAAGGAT-CGCAG-GGCGAT---G--TT-GGCATCAGT-TTGGCTACAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|13 ): AAGCCATGTTGCCACCATGTAGCAAGGTCCCCCTCTCTCATACTGTCGCTGTGGATCCAAAGGCAAAGGCCAAATATAGTTTTTGGCAGCAGCAGCGTCG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC
Alignments
lowQualScore : 1111 111111111 11111 111111111111 1111 11 111 11 111 111 11 111 44444444444444444444444 11111 111 1 22222222 111 1 44444444444 11111 1 1 1 1
lowQualScore : 7777 2 1 444444444 4 33333 4 4 4 888888888888 0000 4 1 4 22 4 1 333 66 11 33 0 4 777 5 666 555 1 0 555 5 0 5 66 1 11 88 3 444 5 88888888888888888888888 7 22222 5 444 0 3 1 6 6 6 7 6 8 55555555 1 444 1 0 2 0 3 1 1 6 55555555555 1 2 88888 3 2 0 1 6 3 0 0 5
lowQualScore : .... . . ......... . ..... . . . ............ .... . . . .. . . ... .. .. .. . . ... . ... ... . . ... . . . .. . .. .. . ... . ....................... . ..... . ... . . . . . . . . . ........ . ... . . . . . . . . ........... . . ..... . . . . . . . . .
lowQualScore : 6666 7 9 000000000 4 77777 9 0 0 444444444444 9999 0 2 0 22 0 7 999 11 33 99 1 4 888 0 555 777 7 7 777 7 1 0 99 4 22 44 4 888 0 44444444444444444444444 6 55555 0 777 1 3 0 7 3 7 3 7 0 00000000 4 888 4 8 5 0 2 2 0 5 00000000000 0 5 55555 2 5 0 0 5 2 0 0 0
consensus : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
Reference ( family-2231 ) : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGGAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|1 : GTGCAGGCCTGGGCA--GATGATACAGAGATC---CTGAAGTGCTTA-GTCGT--CAGGACCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCAG-------TGAAGGAG-TTGTC---ATAAGGGTTT-TTCAGG---ACTCATCCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTGTAGTCTAGCCTGGCTATG
gi|1 : agCTTGTTGA-TGGAGAGGCTGTGTACTGGCAAGGCAAAGACTTGCTCGTTCGCG---------TTGCTGCAAGCAGCT-GTGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|11 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaG-TTGCC---GGAATG-TTG-CG-AGT---GGTAAACCAAT--CCGCCTAACG-GAC-CCA-C--TCCGGATTTTCTTTCAAGGGT-TACT-CCTTAGCCTTCTTCT-CTCCCG---------A-------------TTAAATGACAAAGCCGTGacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|12 : cagTGTAAGCCTGGACATTG-CGATATGTAGGAC-------AG-GCCCT-GT-AT--TAGG-TCC-AC-CTCTC---C-AC-GCTATCGCTG----TGG-TCCAAAGG-AAAGGCAA-
gi|13 : tgtaggtgatggcatggacgga--CAAGGTCC-CC-CTCTCTCAT-ACTG---TCGCT----GTGGATCCAAAGGCAAAGGC----CAAATATAGTTTTT-GGCAGCAGCAGCG
gi|14 : aagccatgttgccaccatgtagCCCA-GTAAA--CATGATACACC-CTCTT---A-GC-C---TTGCTGAT-ATAG-TCCAGAGG-AATGGAAAAGCCATTGCGT---CT-GGTACCAGG-TTGACTGCAGGAG-TTGCC---tcg
gi|15 : TGCCCATGTAG---CAGGTCCC-TC-CTCTC---ATACTG---TCGCTG----TGA-TCCAAAGG-A-----AA-GCCAATATAGTT-TT-GGCAGCAGCAGCG
gi|17 : cctgt-GCAGCTGCAGGAA-TTGCC---AGTAGG-TTT-CGCAtcg
gi|2 : GTTCAGGCCTGGGCA--AATGATACGGAGATC---CTGAAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAG-GCCAATACGG---TC-GGTGTCAGC-GCAGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GATCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TGGGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTGTAGT-TAAGGGTGCTGTGTACTGGCAGGG-CAAGGCTTTCCCGTTCGCG---------TTGCTGCAAGCAGCT-GTGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|3 : AG-CTGCCGGAAGAAGG-TT---GCAAGTATGCTAAATCAA---CCGCCTAACG-GACCCCA-C--TCTGGATTTTCTATC-AGGGTTTACTCCCTTATCCTTTTTCT-CTCCCA---------A-------------GGTATCTACAAGGCAGTAAA-----GGT-ATTT-G-CCAATAGCTAGGGGTTTGGTTTGTTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTGCGA--TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACGCATTCG-GCTCTCCTTTTTGCTTTAAA--------GCTAGCCAAACGATGTA-GCTGAAAGCCGCAGAAGT-ACAGGCAc
gi|4 : CAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTTGGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGCgctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|4 : CTTGCGAT--GGAGAGGCTA-GTA-TGGCAGGG-AGAGAC-TACGC-CTCG-G---------CTCCTTTTCGCA--TAATGC-AG-C-AGCGGTGTTAGCTG-AAG-CG-AGAAGT-ACAAGCACcagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|5 : caaggcagtagagcttatttgcccatagctgggggtttggttcgtttggcaccagggcgtacccaccgcacggtggcctgcatcacacgtcctggggcaaaacgctcgtccgagtgcttgccagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggGTGCAAGCCCGGGCCTTG-TAATATGGAGGACAAGCTGT--TGCCCA---TGTAACAGG-TCC-TC-ATCTC---C-AC-G---TTG-TCACTGTGA-TCCAAAGG-AAAGTCAA-GTCAATACAG---TTTGGCAGCAGCAGCATC-GTAGGAG-TTGC----AGAATA-TGT--GCTGAA--GTTCAGCAAAAAATCACCTTCGG-GACTCCGGC--TCAGGATTTT-TCTT-GAGATGTACTCCTGTAGCCTT-------TCCTATAAATAGGTG-------------GC----CGCAAGGCAGCGGA-----GCT-tctccaacaacttacacactagacgcatcacacggct
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CC-CTCTC---T-TC-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGATACGT---TG-GGCATCAAT-TTGTCTGCAGtct
gi|6 : cgc-C--TGCAGATTT-CTGT--AGGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAA-------G-------------GT-ATCCACAAGGCAGTGATTTGTTGCT-ATTT--ACCCATAGCTAGGGACTAGGATTG-CAGGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGAatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|7 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtCAGCTGCAGGAAATTGCC---AGTAGG-TTTTCGCAAA---GTTAAACCAA---CTGCCTAAGTTGGTTCCA-CATTCTG--CTTTCTGTT-GGCGTG-ACTCCCC-AGC--TGGATT-CTCCCG---------GGCGGTTCTCCTGGGTCATTCACA-GGCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCTG-ATCG-TGGGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-Cgtc
gi|8 : GTGCAGGCCTGGGCA--GATGA-----------------AGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCCGC-GCAGCTGCAGGAG-TTGCC---AAAAGG-TTT-CGCAGG---GCTCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCTCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|9 : gGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CCTCTCTT---T--C-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGAT---G---TT-GGCATCAGT-TTGGCTACAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC
Alignments
lowQualScore : 1111 111111111 11111 111111111111 1111 11 111 11 111 111 11 111 44444444444444444444444 11111 111 1 22222222 111 1 44444444444 11111 1 1 1 1
lowQualScore : 7777 2 1 444444444 4 33333 4 4 4 888888888888 0000 4 1 4 22 4 1 333 66 11 33 0 4 777 5 666 555 1 0 555 5 0 5 66 1 11 88 3 444 5 88888888888888888888888 7 22222 5 444 0 3 1 6 6 6 7 6 8 55555555 1 444 1 0 2 0 3 1 1 6 55555555555 1 2 88888 3 2 0 1 6 3 0 0 5
lowQualScore : .... . . ......... . ..... . . . ............ .... . . . .. . . ... .. .. .. . . ... . ... ... . . ... . . . .. . .. .. . ... . ....................... . ..... . ... . . . . . . . . . ........ . ... . . . . . . . . ........... . . ..... . . . . . . . . .
lowQualScore : 6666 7 9 000000000 4 77777 9 0 0 444444444444 9999 0 2 0 22 0 7 999 11 33 99 1 4 888 0 555 777 7 7 777 7 1 0 99 4 22 44 4 888 0 44444444444444444444444 6 55555 0 777 1 3 0 7 3 7 3 7 0 00000000 4 888 4 8 5 0 2 2 0 5 00000000000 0 5 55555 2 5 0 0 5 2 0 0 0
consensus : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
Reference ( family-2231 ) : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|1 : GTGCAGGCCTGGGCA--GATGATACAGAGATC---CTGAAGTGCTTA-GTCGT--CAGGACCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCAG-------TGAAGGAG-TTGTC---ATAAGGGTTT-TTCAGG---ACTCATCCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTGTAGTCTAGCCTGGCTATG
gi|1 : agCTTGTTGA-TGGAGAGGCTGTGTACTGGCAAGGCAAAGACTTGCTCGTTCGCG---------TTGCTGCAAGCAGCT-GTGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|11 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaG-TTGCC---GGAATG-TTG-CG-AGT---GGTAAACCAAT--CCGCCTAACG-GAC-CCA-C--TCCGGATTTTCTTTCAAGGGT-TACT-CCTTAGCCTTCTTCT-CTCCCG---------A-------------TTAAATGACAAAGCCGTGacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|12 : cagTGTAAGCCTGGACATTG-CGATATGTAGGAC-------AG-GCCCT-GT-AT--TAGG-TCC-AC-CTCTC---C-AC-GCTATCGCTG----TGG-TCCAAAGG-AAAGGCAA-
gi|13 : tgtaggtgatggcatggacgga--CAAGGTCC-CC-CTCTCTCAT-ACTG---TCGCT----GTGGATCCAAAGGCAAAGGC----CAAATATAGTTTTT-GGCAGCAGCAGCG
gi|14 : aagccatgttgccaccatgtagCCCA-GTAAA--CATGATACACC-CTCTT---A-GC-C---TTGCTGAT-ATAG-TCCAGAGG-AATGGAAAAGCCATTGCGT---CT-GGTACCAGG-TTGACTGCAGGAG-TTGCC---tcg
gi|15 : TGCCCATGTAG---CAGGTCCC-TC-CTCTC---ATACTG---TCGCTG----TGA-TCCAAAGG-A-----AA-GCCAATATAGTT-TT-GGCAGCAGCAGCG
gi|17 : cctgt-GCAGCTGCAGGAA-TTGCC---AGTAGG-TTT-CGCAtcg
gi|2 : GTTCAGGCCTGGGCA--AATGATACGGAGATC---CTGAAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAG-GCCAATACGG---TC-GGTGTCAGC-GCAGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GATCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TGGGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTGTAGT-TAAGGGTGCTGTGTACTGGCAGGG-CAAGGCTTTCCCGTTCGCG---------TTGCTGCAAGCAGCT-GTGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|3 : AG-CTGCCGGAAGAAGG-TT---GCAAGTATGCTAAATCAA---CCGCCTAACG-GACCCCA-C--TCTGGATTTTCTATC-AGGGTTTACTCCCTTATCCTTTTTCT-CTCCCA---------A-------------GGTATCTACAAGGCAGTAAA-----GGT-ATTT-G-CCAATAGCTAGGGGTTTGGTTTGTTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTGCGA--TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACGCATTCG-GCTCTCCTTTTTGCTTTAAA--------GCTAGCCAAACGATGTA-GCTGAAAGCCGCAGAAGT-ACAGGCAc
gi|4 : CAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTTGGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGCgctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|4 : CTTGCGAT--GGAGAGGCTA-GTA-TGGCAGGG-AGAGAC-TACGC-CTCG-G---------CTCCTTTTCGCA--TAATGC-AG-C-AGCGGTGTTAGCTG-AAG-CG-AGAAGT-ACAAGCACcagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|5 : caaggcagtagagcttatttgcccatagctgggggtttggttcgtttggcaccagggcgtacccaccgcacggtggcctgcatcacacgtcctggggcaaaacgctcgtccgagtgcttgccagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggGTGCAAGCCCGGGCCTTG-TAATATGGAGGACAAGCTGT--TGCCCA---TGTAACAGG-TCC-TC-ATCTC---C-AC-G---TTG-TCACTGTGA-TCCAAAGG-AAAGTCAA-GTCAATACAG---TTTGGCAGCAGCAGCATC-GTAGGAG-TTGC----AGAATA-TGT--GCTGAA--GTTCAGCAAAAAATCACCTTCGG-GACTCCGGC--TCAGGATTTT-TCTT-GAGATGTACTCCTGTAGCCTT-------TCCTATAAATAGGTG-------------GC----CGCAAGGCAGCGGA-----GCT-tctccaacaacttacacactagacgcatcacacggct
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CC-CTCTC---T-TC-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGATACGT---TG-GGCATCAAT-TTGTCTGCAGtct
gi|6 : cgc-C--TGCAGATTT-CTGT--AGGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAA-------G-------------GT-ATCCACAAGGCAGTGATTTGTTGCT-ATTT--ACCCATAGCTAGGGACTAGGATTG-CAGGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGAatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|7 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtCAGCTGCAGGAAATTGCC---AGTAGG-TTTTCGCAAA---GTTAAACCAA---CTGCCTAAGTTGGTTCCA-CATTCTG--CTTTCTGTT-GGCGTG-ACTCCCC-AGC--TGGATT-CTCCCG---------GGCGGTTCTCCTGGGTCATTCACA-GGCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCTG-ATCG-TGGGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-Cgtc
gi|8 : GTGCAGGCCTGGGCA--GATGA-----------------AGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCCGC-GCAGCTGCAGGAG-TTGCC---AAAAGG-TTT-CGCAGG---GCTCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCTCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|9 : gGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CCTCTCTT---T--C-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGAT---G---TT-GGCATCAGT-TTGGCTACAGa
blockSeqs : TTG T A AAGCTGT T TGTAA G A T TCATACTG ACTG A A C AA A A TTT TT AG CA A GGA . TTC TAT G AAA T G AT G CA GA T CTT A GGCGGTTCTCCTGG A TTGTT T TGA T G C A A A A G ATCTAGGT T AT A C . T T C G GCTCTCCTTT G C GCTG T C A G G A C C G
blockSeqs : TTG C T CTGAAG . AAA A . . CACGCTA ATA . A . AA . G TT T AC CA . . . GC A A T . . . T T TT C GGA . TAAATAGGTG C . . AA T T . G . A . . TCC A TT G C . T A G A CG T C TAA T C . T A A . . .
blockSeqs : AA T A CTGGGC . CGT T . . ATACTG ACA . A . AT . A . T AG CA . . . TC . C . . . . G C GT T TTT . AAG T . . AA . T . A . A . . TG G T G . . . A G . G T . . . . . T . . . . .
blockSeqs : AA T T CTGGGC . AAC A . . AGCC ATG . A . GA . G . T GT G . . . TC . T . . . . G T TT G GGA . A C . . G . A . A . . . . G T A
blockSeqs : GA T T AG . CGT A . . GGCG ACA . G . AA . A . C AG C . . . TC . T . . . . A T GA C GGA . G C . . G . G . . . . .
blockSeqs : AA . . AG . AAC A . . CACG ATG . A . GA . G . G AT T . . . T . C . . . . G T T C TC . A . . . A
blockSeqs : . AT A . . TTCC G . A . T . A . C GT C . . . . . . T . G . . . G . . .
blockSeqs : . AG . . . GGCG . . G . T . . . T AT T . .
blockSeqs : . . . TCC . . A . . .
blockSeqCons : C* AA* T**
originalCons : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-GACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
finalCons : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTTAA-CCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGCGGT--GGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCT-GTGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC
Alignments
lowQualScore : 1111 111111111 11111 111111111111 1111 11 111 11 111 111 11 111 44444444444444444444444 11111 111 1 22222222 1111 1 44444444444 11111 11 1 1 1
lowQualScore : 7777 2 1 444444444 4 33333 4 4 4 888888888888 0000 4 1 4 22 4 1 333 66 11 33 0 4 777 5 666 555 1 0 555 5 0 5 66 1 11 88 3 444 5 88888888888888888888888 7 22222 5 555 0 3 1 6 6 6 7 6 8 55555555 0000 3 2 0 44 1 6 55555555555 1 2 88888 3 22 1 6 3 0 0 5
lowQualScore : .... . . ......... . ..... . . . ............ .... . . . .. . . ... .. .. .. . . ... . ... ... . . ... . . . .. . .. .. . ... . ....................... . ..... . ... . . . . . . . . . ........ .... . . . .. . . ........... . . ..... . .. . . . . . .
lowQualScore : 6666 7 9 000000000 4 77777 9 0 0 444444444444 9999 0 2 0 22 0 7 999 11 33 99 1 4 888 0 555 777 7 7 777 7 1 0 99 4 22 44 4 888 0 44444444444444444444444 6 55555 0 111 1 3 0 7 3 7 3 7 0 00000000 7777 2 5 0 55 0 5 00000000000 0 5 55555 2 55 0 5 2 0 0 0
consensus : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGC-GA-TGGGGAGGCTGTGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCTG-TGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
Reference ( family-2231 ) : GTGCAGGCCTGGGCA--GATGATACGGAGATC---CTGGAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---N-GC-G---TCGCTGAC-GTGG-TCCGAAGG-AGAGGCAA-GCCAATACGG---TC-GGCGTCAGC-GCGGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GCTCAACCAA---CCGCCTAAGG-GGCTCCA-C--TCCGGATTTTCTGTC-GGGGTGNACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCGC-CGGTGGGCCATGCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCCAAG-TC----CCTTGC-GG-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACNCGTTCGCG---------TTGCTNCAAGCAGCTG-TGCTAGCC-AGCGGTGNAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|1 : GTGCAGGCCTGGGCA--GATGATACAGAGATC---CTGAAGTGCTTA-GTCGT--CAGGACCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCAG-------TGAAGGAG-TTGTC---ATAAGGGTTT-TTCAGG---ACTCATCCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCGTAGCTGGGGATCTGGATCG-TGGGCACCAG-GGCGTATCCACGCAC-CGGTGGGCCATCCATGCCACACGTCTAGGGGCC-AGAC-CTCCTCTAAG-TC----CCTTGT-AG-T
gi|1 : agCTTGTTGA-TGGAGAGGCTGTGTACTGGCAAGGCAAAGACTTGCTCGTTCGCG---------TTGCTGCAAGCAGCTG-TGTTAGCC-AGCGGTGGAGGCTAAAAG-CG-AGAGGTGACAAGGACctagcctggctatgaagtataaccagttgacatgagtcgccactacataggacttgttgatggagaggctgtgtactggcaaggcaaagacttgctcgttcgcgttgctgcaagcagctgtgttagccagcggtggaggctaaaagcgagaggtgacaaggacacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|11 : aggtgcaggcctgggcagatgatacagagatcctgaagtgcttagtcgtcaggacccccctctcggcgttgctgacagggtccggcggagaggcaagccaatacagtcggtgtcagtgaaggagttgtcataagggtttttcaggactcatccaactgcctaaggggctccactcctgattttctgttggggtgaactcccctagccttggactctcccgggccattcacaaggcagtgaagctatttaacccgtagctggggatctggatcgtgggcaccagggcgtatccacgcaccggtgggccatccatgccacacgtctaggggccagacctcctctaagtcccttgtagtctagcctggctatgaagtataaccagttgacatgagtcgccactacataggaG-TTGCC---GGAATG-TTG-CG-AGT---GGTAAACCAAT--CCGCCTAACG-GAC-CCA-C--TCCGGATTTTCTTTCAAGGGT-TACT-CCTTAGCCTTCTTCT-CTCCCG---------A-------------TTAAATGACAAAGCCGTGacagacatttagccaacacactagacgcatcacaccaaccattgagactcatatattggagtaaattatcaaataat
gi|12 : cagTGTAAGCCTGGACATTG-CGATATGTAGGAC-------AG-GCCCT-GT-AT--TAGG-TCC-AC-CTCTC---C-AC-GCTATCGCTG----TGG-TCCAAAGG-AAAGGCAA-
gi|13 : tgtaggtgatggcatggacgga--CAAGGTCC-CC-CTCTCTCAT-ACTG---TCGCT----GTGGATCCAAAGGCAAAGGC----CAAATATAGTTTTT-GGCAGCAGCAGCG
gi|14 : aagccatgttgccaccatgtagCCCA-GTAAA--CATGATACACC-CTCTT---A-GC-C---TTGCTGAT-ATAG-TCCAGAGG-AATGGAAAAGCCATTGCGT---CT-GGTACCAGG-TTGACTGCAGGAG-TTGCC---tcg
gi|15 : TGCCCATGTAG---CAGGTCCC-TC-CTCTC---ATACTG---TCGCTG----TGA-TCCAAAGG-A-----AA-GCCAATATAGTT-TT-GGCAGCAGCAGCG
gi|17 : cctgt-GCAGCTGCAGGAA-TTGCC---AGTAGG-TTT-CGCAtcg
gi|2 : GTTCAGGCCTGGGCA--AATGATACGGAGATC---CTGAAGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAG-GCCAATACGG---TC-GGTGTCAGC-GCAGCTGCAGGAG-TTGCC---AGAAGG-TTT-CGCAGG---GATCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCCCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAAGCAGTGAA-----GCT-ATTT-AACCCATAGCTGGGGATCTTGATCG-TGGGCACCAG-GGCGTATCCACACGC-CGGTGGGCCATGCATGCCACACGTCTAGGTGCC-AGAC-CTCCTCCAAG-TC----CCTTGT-AGTTAAGGGTGCTGTGTACTGGCAGGG-CAAGGCTTTCCCGTTCGCG---------TTGCTGCAAGCAGCTG-TGCTAGCC-AGCGGTGGAGGCTGAAAG-CG-AGAGGTGACAAGCAC
gi|3 : AG-CTGCCGGAAGAAGG-TT---GCAAGTATGCTAAATCAA---CCGCCTAACG-GACCCCA-C--TCTGGATTTTCTATC-AGGGTTTACTCCCTTATCCTTTTTCT-CTCCCA---------A-------------GGTATCTACAAGGCAGTAAA-----GGT-ATTT--GCCAATAGCTAGGGGTTTGGTTTGTTTGGCACCAG-GGCGTATCCACGCAA-CGTAGGGCC-TGCATGCCACACGTCTGGGGGCCAAAAC-CTGCTCCAAGATCTAGGTTTTGC-GA-TGGGGAGGCTATGTACTGGCAGGG-AGAGACTTACGCATTCG-GCTCTCCTTTTTGCTTTAAA--------GCTAGCCAAACGATGTA-GCTGAAAGCCGCAGAAGT-ACAGGCAc
gi|4 : CAAGGCAGTAGA-----GCTTATTT-G-CCCATAGCTGGGGGTTTGGTTCGTTTGGCACCAG-GGCGTACCCAC-CGCACGGT-GGCC-TGCAT--CACACGTCCTGGGGCA-AAACGCTCGTCCGAG-T-----GCTTGC-gctactcgacaaactaccacactagacggcgtcaccaccgctttgtcacaataactaaaatataaaata
gi|4 : CTTGC-GA-TGGAGAGGCTA-GTA-TGGCAGGG-AGAGACT-ACGC-CTCG-G---------CTCCTTTTCGCA--TAATGC-AGC--AGCGGTGTTAGCTG-AAG-CG-AGAAGT-ACAAGCACcagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggcttgcgatggagaggctagtatggcagggagagactacgcctcggctccttttcgcataatgcagcagcggtgttagctgaagcgagaagtacaagcactctccaacaacttacacactagacgcatcacacggct
gi|5 : caaggcagtagagcttatttgcccatagctgggggtttggttcgtttggcaccagggcgtacccaccgcacggtggcctgcatcacacgtcctggggcaaaacgctcgtccgagtgcttgccagttttgcctgagtcaggtgaaggtgctcagttgcaaaatgacgaacgggaaccaatgaggcgtaggGTGCAAGCCCGGGCCTTG-TAATATGGAGGACAAGCTGT--TGCCCA---TGTAACAGG-TCC-TC-ATCTC---C-AC-G---TTG-TCACTGTGA-TCCAAAGG-AAAGTCAA-GTCAATACAG---TTTGGCAGCAGCAGCATC-GTAGGAG-TTGC----AGAATA-TGT--GCTGAA--GTTCAGCAAAAAATCACCTTCGG-GACTCCGGC--TCAGGATTTT-TCTT-GAGATGTACTCCTGTAGCCTT-------TCCTATAAATAGGTG-------------GC----CGCAAGGCAGCGGA-----GCT-tctccaacaacttacacactagacgcatcacacggct
gi|6 : aggtgcaggtgtgagtgtgtaggtgatgacatgggcggGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CC-CTCTC---T-TC-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGATACGT---TG-GGCATCAAT-TTGTCTGCAGtct
gi|6 : cgc-C--TGCAGATTT-CTGT--AGGGTTTACTCCT-TAGCCTTTC-CTACTCCCGAA-------G-------------GT-ATCCACAAGGCAGTGATTTGTTGCT-ATTT-A-CCCATAGCTAGGGACTAGGATTG-CAGGCACCAG-GGCATATCCAAACAC-TGATGGGCCATGCATGCCTTGCATTTAGGGGCC-TGAatttctgtagggtttactccttagcctttcctactcccgaaggtatccacaaggcagtgatttgttgctatttacccatagctagggactaggattgcaggcaccagggcatatccaaacactgatgggccatgcatgccttgcatttaggggcctgagtc
gi|7 : cgcggcctgggcaaagtatatggagatcctgggctgcccagtaaccaggatccccctctcttcctccctgatgtgttccaaaggatcgcagggcgatacgttgggcatcaatttgtCAGCTGCAGGAAATTGCC---AGTAGG-TTTTCGCAAA---GTTAAACCAA---CTGCCTAAGTTGGTTCCA-CATTCTG--CTTTCTGTT-GGCGTG-ACTCCCC-AGC--TGGATT-CTCCCG---------GGCGGTTCTCCTGGGTCATTCACA-GGCAGTGAA-----GCT-ATTTTGACCC-TAGCTGGGGATCTG-ATCG-TGGGC-CCAGCAGCATATCCGCAGGT-TGGTGGACCATGCATGCCACACGTCTAGGGGCC-AGAC-Cgtc
gi|8 : GTGCAGGCCTGGGCA--GATGA-----------------AGTGCCCA-GTCGT--CAGGATCC-CC-CTCTC---G-GC-G---TTGCTGAC-AGGG-TCCGGCGG-AGAGGCAA-GCCAATACAG---TC-GGTGTCCGC-GCAGCTGCAGGAG-TTGCC---AAAAGG-TTT-CGCAGG---GCTCAACCAA---CTGCCTAAGG-GGCTCCA-C--TCCTGATTTTCTGTT-GGGGTGAACTCTCCTAGCCTTGGACT-CTCCCG---------G-------------GCCATTCACAAGGCAGTGAA-----GCT-ATTT-AACCCATAGctgtagtctagcctggctagaagtataaccagttgacatagtcgcca
gi|9 : gGGCCTGGGCA--AAGTATATGGAGATC---CTGGGCTGCCCA-GTAAC--CAGGATCC-CCTCTCTT---T--C-C---TCCCTGAT-GTGT-TCCAAAGG-AT-CGCAG-GGCGAT---G---TT-GGCATCAGT-TTGGCTACAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACCCTTGTAGTTTAGCCAGGGGCCTCGCGGTGCCCAGTTACCGTGTGCTGTCACGTGGAGACACTACATAGGACTAGTTGTTCTGACAGGAGAGACTTGTACACTAGGCAGCTCTATGTTTGCATTTCTGCTAGTCAGAGGTGG
Unaligned ( gi|16 ): AGGTTGCAAGTGTGCTAGATCAACCGCTAACGGACC