lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111111111 222222222222222222222222222
lowQualScore : 4444 111111 2222 555555555555 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444444 1 1111 22 22222 2222222222222 333333 55555555555 2222222222 2222222222 111111 1111 77777777777 4444444444444 4 4 1 111 333333333333333333333333333
lowQualScore : 6 2222 999999 77 1 5 1 8888 99 222222222222 2 6 9999 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 6 3 555555 0 4444 3 9 00 0 99999 5555555555555 3 77 111111 77 3 7 1 8 5 33333333333 6 0000000000 1 2 5 4444444444 111111 3 9999 00000000000 6 0000000000000 0 6 6 0 5 888 777777777777777777777777777
lowQualScore : . .... ...... .. . . . .... .. ............ . . .... . .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . ...... . .... . . .. . ..... ............. . .. ...... .. . . . . . ........... . .......... . . . .......... ...... . .... ........... . ............. . . . . . ... ...........................
lowQualScore : 0 0000 222222 88 0 5 0 3333 22 222222222222 2 7 3333 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 7 222222 0 8888 8 0 66 8 33333 7777777777777 9 99 666666 99 4 9 3 9 7 77777777777 7 3333333333 0 3 3 2222222222 888888 2 0000 00000000000 0 0000000000000 0 0 0 0 0 000 000000000000000000000000000
consensus : TTTCATGACGGTGGAGAA-TAGATAATCCT------AATTATGNTTCTTTNGAGACTGTAA----TT--ACAAG-TCAC------TGCGACTANG-TTGAT-A--CT-TAT-------------AAAAA-GTGTAGACTTAG---NCGA---TAC-A-CA-TACAAGTGNAGGTT------TATTT-TTT-TAA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT-CT-AAAAG-A---TCTT-TTTTTTGT---NAATTTT--ATT----ATTCG--CTTT-CT-CTTTTGTTTGCAA---A----CNA-----TT------ATC-------AA--AGTTGCGATT------------AATC-AGAGATAAACATGAA--G-TCATTCAGTCATCTCGGCT-----ANAGN-T-A-A-C-TCA---GCATAT----A-------ACT---CGA----------CACC-TTTTTTT--ATGAATATTGAATNAAAA-ATGTGAGTATAATG---AANATT-TTAAGT-TT--TTTATC-AAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGAT-TTTC-AGAANCNAGNTTCGAA-TTTATTTCCNTCCGAT-----C-GC-A-CCCCTTC----------TA-T-AAA--AAAA---CC----------CC-A---------------G--TTTTAGACANGATTAAAAGTTGATTCG----AA-GTGCAT---TTTCTCTCGAGTTAGACAACT----TTTGCCAAC--------ATATGTCGT--TTT---T--ATA--TCAAACANTCTCCCTTCAATTA-TTT-A-TAG--ATCT-TA--A--A--A-TTAGAATTAACTTCATCCCAAAATAGCTTA------NACCTAATNA--ATGTANTTNTTGCTTAACACTGNTAAA--TACCTTACTGTCAT---TTA---TCG-TCATTATTTTAAGCCATACA-ATCATATAGCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
Reference ( gi|1 ) : TTTCATGACGGTAGAGGAATAGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--ACAAGATCACTG----TGCGACTAAG-TTGAT-A--CT-TAT-------------AAAAA-GTACAGACTTGA---TTGA---TAC-A-CAGTACAAGTGGAGGTT------TATTTTTTT-TAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT-CTTAAAAG-A---TCTT-TCTTCTGT---CAATTTT--ATT----ATTCA--CTTTGCTGCGTTTGATTGCAA---A----CAA-----TT------ATC-------AA--AGTTACAATT------------AATA-AGAGATAATCATGAA--A-TCATTCAGTCGTCTCGGCT-----AAAGC-T-A-A-C-TCA---GC--------G-------ACT---CGA----------CA---TTTTGTTAAATGAATATTCAATTAAAA-ATGT---TATA-TG---AATATTTTTGAGTTTT--TTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAGT-TTCATCTCCTTCCGAT-----CTGC---CCCCTTCGGGGTCTT-ATATTGAAA--AAAA---CCA---------CCAA---------------G--TTGTAGACAGGATTAAAAGTTGATTC-----AA-GTGCAT---TTTCTCTCGAGTTAGACAACT----TTTGCGAAC--------GTATATTGT--TTT---T--ATA--TCAAACATTTTCCCTTCAATTA-TTT-A-TAG--ATGT-TA--A--A--A-TTAGAATTAACTTCATCCCAAAATAGCTTA------TACCTATTTA--ATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATTAATTTCATTCATTATTTT-AGTCATGCATATGATATAGCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAGAAATAGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--ACAAG--TACAT----TGCGACTATG-TTGATCAGTCT-TATTTCTTCTTTGTGCAAAAA-----AAA-----------A---TAT-ATCAAAACGAGTCG-----------TATTT-------A-GCGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA--------------AACAG-A---ACTT-GCACATAT---AAA------ATT----CTTC---CTTTTCC----TTG---GTAA---A----TCA-----TT------CTC-------AA--AGTTGCAATT------------AATA-AGAATCAAT-ATGAA--C-TCATTCAGTCTTCTCGGCT-----ACAGA-A-A-A-TATCA---GCATAT----A-------ACT---CGAACCCCCCCCCCC---TTTTTTT---TAAATATTGAA-TAAAA-GTGTGAGTA-A-TG---AAT-TTTTTCA----T--TTTATT-AAATTG-TT--AACG-TAAACTTTC---TAAAACATACTTGTCAAGAAGTTTC-AAAATCCAGATTCGAA-TGTATTTCCTTCCGAT-----CGGTAA-CTCCTTC----TCTTGATA---AAACTGATA---CGC---------CCCT---------------T--TTTTAGA-AAGATTAAAAGTTGATTTA----AA-GTGCAT---TT--CCTCGAGTTAGACAAA-----TTTGCTAAC--------ATATGTTGTTGTTC---T--AAA--TCAAACGCT---------ATTA-TAT-A--AG--CACT-TA--A--A--A-TTAGAATTAATTTCATCCCAAAATAAATTT------TACCTA
gi|12 : ttgatttaattttcaaatttactactgtaacagtacctgctTTTCTTGACGGTGGA----TAGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--ACAAT-TCA-------TGCAACTAAG-TTGAT-A--CT-TAT-------------AAAAGTGT-TAGACTGAG---GCGA---TA--A-C--TGCAAGTGCAGCTT------TATTTTTTG-TAatatatgtcattcttg
gi|6 : taatctaattttcaactccatcagtttTTTCATGACGGTGGAAAATTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--ACAAGTTCAC------TACGACAAAATTTGAT----CT-TAT--------------AGAT-GTGTA-ACTTTAACTTTCACCTTTC-A-CTGTACA-----AGGTTAAAAAATA------T-CAACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA--------------AAAAGAA---TTTTGTTTTCTATATCCGATTGTA-AAC----ATGCA--ATTT-TTTCTTTTGTCTTCAA---A----C--------T------AT-------------------AT--------------ATGCAGAGATAAACACGAA--G-TCATTCTGTCAACTCGGC
gi|10 : tGACGGTGGA----TAGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--ACAAGTTCAC------TGCAACTAAG-TTGAT-A--CT-TAT--------------AAAA-GTGTAGACTTAG---GCGA---TAC-A-C--TGCAAGTGCAGGCT------TATTTCTTTGTAA-AAAA
gi|5 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnAGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAAATCACT--------GACT-TT-TTGAT-T--CT-TGT-------------AAAA
gi|4 : gacaaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGACAACA-CGTTGACATTATAACGAGG---GAC-A--CTGTAT-------------AA-----TTTAGACTCAA---TTGA---CACTA-CA-TACATGTGAA----------CAAATGATC-GAC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT-CTTAAAA----------------------TAATTTT--AGT----AT--G--CTTT----C-TCTGATTGCAA---GTAAGCAA-----TT------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATC-GGAGATAAACATGAA--G-TCATTCATTAACATCGGTT-----AG-GCGT-ACA-C-TTA---GCACTT----G-------GCTATCTGA----------CACC-TTTTCCTAGAT----ATTAAAT-AATA-ACTT---TGTAATG---AAAA-----AAGTATTGCTTTAT--AAA--GCTTCGAGCGGCA-CATTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAAA-TTTATTTCCCTCCTATAACCTCTGC---CCCCTTC----------TATT--AA--AAAA---CC----------CGAAAAATGGTACGTGTCTG--TTTTAGACATGATTAAAAGTTGATTCG----AA-GTGTG----TTTCACT-GCCTTAGACAACTTAGCTTTACTAAC--------AGATGCTGT--TTTTC-T--ATA--CCAAACAGCTTCCCTTCAATCA-Tgtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT-TTAAGAAG-AACTTTTT-TTTTTTGT---GTATTTCCGATTGCAAACTGAGTCTTT--TGTTTTTGTTTACAACATG----CAT-----TT------ANN-------NN--NNNNNNNNNN------------NNNN-NNNNNNNATCATCAAGGA-TAAA-CA-CCATCTCGGCT-----ACAGT-T-A-AAC-TCA---GT--------ACATGGGAACG---TGG----------CACCATTTT-----ATGGATATTGAATAAAAACATGG----ATAATG---AAAAT------ATTGT--TTTATC--AATT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTTATTATTTATCTCCATCCGAT-----C-GCCATCCCCCTC----------TAGTGAAA--AAAAAACCCATGAGATGCGCC-A---------------GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAA-GTGCATGCATTTC-CTCGAGTTAGACAAC-----TTTGTCAACATATACATGTATGTTGT--TTTTTCT--ATA--TCAAACAGTCCCCCTTCAATTATTTT-A-TAA--GTCTGTAAGA--A--A-TTAGAATTGACTTCATCCCAAAATAGCTTATACACGTACCTAACGA--ATGTAATTCTGGCTTAACACTGATA-----ATCTTACTGTCAT---TTA---TCG-TCATTATTTTAAGCCATACA-ATCATATAGCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCTagaataagtatttccaaaatag
gi|5 : CTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCGAAAAG-A---TCTT-TATTTTG----CA--TTT--CTG----A--------TTGCAAAAATTG-TTGTGA---A----CAAACTGTTT------GTC-------AA--AATTATGATT------------ATTC-ATAGATAAACATGA--------------CTTCTCAGCT-----ATAGG-TAA-A-C-TCA---GCATATGGTTA-------ACT---TGA----------CA----CATATT---TGAATATTC-ATTAGAA-ATATGAGTA-A-TGACAAATATTGTTAAtctcactttagagctc
gi|11 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtggTTTGTTTGCAA---A----TCA-----TT------CTC-------AA--CGTTGTAATT------------AATC-CAAGATGAATATGAA--GTTCATTCAGCCATCTCGGCTACAGAAAAAC-T-A-AGC-ATAATGGT--------A-------ACG---CGA----------CACC-CTCTTTT---TCAATATTGAATAAAAATATGA---GAAA-TG---AA-AATATTG----TT--TTCAT--AAATT-TTT--AACGGTAGCa
gi|17 : tTTTGA---CAA---A----TCA-----TTTATTTGATC-------AA--TGTTGCAATT------------AATC-AAAGATAAATATGGA--G-TTATCCAGTCATCTtctct
gi|8 : cttattttcaaAGTTGACTA-----AACGTGCAT---TTCCTC--GAGTTAGACAACT----TT-GTG--C--------ATTTGTCGT--TTT------------CAGGGAGTTTTCCTTCAATCA-TTT-A-TAAGCATTT-TA--A--A--AATTAGA-----CTTTATCCCAAAATAGCTTA------CATATAATAA--ATGTAATTCTTGCTTAATACTGCTAAA--TACTagctcgg
gi|7 : ttgatcgcctcctccctctcttaaaaaaagatacgcgcctgttgtGCAT---TTTCTC--GAGT-AGACAAC-----TTTGTCAAC--------ATAGACCGT--TTT---T--GTATTTCAAACATTGTCCCTTC-ATT--TTT-A-TAA--GC-T-TA--AGCA--C-TTAAAATTAATATAATCCAAATATAGCgataatctaactgt
gi|9 : AATN----TTTGCCATC--------ATATGTTGT--TTT---TCTATA--TCAAACATTCTCCTGTCTATTA-TTTCATTAGC-AT-T-TA--A--AACA-TTATTGCTAACTTCATCCCAAAATACCTAA------AA---ATTTA--ATAAATTCATTTTTTaacataattttactgtcattaatcgtcagtatttacagatacgcattcatatacatgtcgcatgattaacaaattccaattttgctcttctgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|15 : ----TTTGCCATC--------ATATGTTGT--TTT---TCTATA--TCAACCATTCTCCTGTCTATTA-TTTCACTAGC-AT-T-TA--A--AACA-TTATTGCTAATTTCATCCCAAAATA-CCTA------AA--TNTTTGCCAT-CATATGTTGTTTgcttaatactggaatgatggtgtcattgttttcagacatacgtttagatggtatgattgacaatatttcaa
gi|18 : AATTAACTTCATCCCAAAATAAATTT------TACCTAATAA--ATGTA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATTGAATTTCTCCTAAAATAGTTTACATCTAACAAATGTAATTCTTGCTTAATACTGATCGTCTGTCATCAATTTTCATCATTCTCAACAATATGTTTATTTAGCATGATGTACAGTGTTTCATTTTCGCATCTTTACATATATGAAGA
Unaligned ( gi|14 ): AACACTGTTAATCTAACTGACATGTAACCATGTGTTCATGTAGCATGAAACGCTTTCATTTTCGTCTCTCAGCATGTATGAAGATCGATCCTTTTACTTTCAAAGTCTCGCATGGTTATGCAAAAATAA
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 111111 2222 222222222 2 11111 222 222222 111 111111 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111 333333333333333333333333333333333333333333 1111 3333333333 111 22222222 33333333 2 222222 44444444444444 22 1 111 111 11 33333333 1111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 22222 111 22 1111 11 11111111 222222 33333333333 2222222 111111 8888888888888888888888888888888888 1 11 111111 111 11
lowQualScore : 00000 6 666666 1 1 4444 77 5 999999999 1 999 1 5 3 6 3 1 6 66666 22 8 999 6 3 3 333333 6666 8 444 1 444444 6 3333 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 55 44444444 1 5 111111111111111111111111111111111111111111 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 5 0 2 888888 1 22222222222222 8 11 11 0 111 1 8 444 33 3 6 0 66666666 1 1 1 9999 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33 2 1 33333 111 3 66 0000 44 3 0 88888888 2 66 666666 66 1 5 6 44444444444 5 2222222 4 1 4 2 222222 2 1 1 0 0 2222222222222222222222222222222222 5 1 55 999999 9 22 888 99 1 00 3 11 22
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . . ..... .. . ... . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . .......................................... . . .. . . .... . . . .......... ... ........ ........ . . . ...... . .............. . .. .. . ... . . ... .. . . . ........ . . . .... . ...................................................................................... .. . . ..... ... . .. .... .. . . ........ . .. ...... .. . . . ........... . ....... . . . . ...... . . . . . .................................. . . .. ...... . .. ... .. . .. . .. ..
lowQualScore : 44444 7 444444 0 0 3333 99 7 777777777 7 666 0 7 5 7 7 7 7 77777 44 0 666 0 8 8 000000 4444 0 000 0 333333 7 7777 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333 4 0 22 11111111 0 0 444444444444444444444444444444444444444444 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 2 5 2 555555 0 88888888888888 0 22 66 0 888 4 0 000 22 2 5 2 00000000 0 0 0 0000 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 88 5 0 44444 777 5 33 6666 44 4 5 11111111 0 99 555555 99 0 4 6 44444444444 7 6666666 4 9 4 6 888888 8 0 0 1 4 7777777777777777777777777777777777 2 0 00 222222 0 55 555 22 0 88 2 88 22
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TAT-AAAAGTG-TA-----GACTTAGNCGATAC-AC-G-TACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAATATGAGT-ATAATGAANATT-TT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TT---TTTAAAA-ATGCTTGTCAGGA-TTTTTTGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGAT------C-GCC-A-CCCCTTC---------T----A-T-G-AAAA-----AAACC-C-----------CAA---------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTCT-GAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTT--TT--T---ATA--TCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--T-CCTTACTGTCAT---T-A---TCG-TCATTATTTTCAGCCATGCG-TTCATATA------GCATGATTGACAAAN--TT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGNTTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTANG-TTGATACT-TATAAAAAGTG-TA-----GACTTAGNCGATAC-AC-A-TACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTTTTTTGTNAATTTT--ATT----AT-----TCG---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCGATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTANAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAATNAAAAATGTGAGT-ATAATGAANATT-TT-AAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TT---TTTAAAA-ATGCTTGTCAGGA-TTTTC--AGAANCNAGNTTCGA--ATTTATTTCCNTCCGAT------C-GC--A-CCCCTTC---------T----A-T---AAAA-----AAACC-C-----------CA----------------GTTTT--AGACANGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCCAACATAT--------GTCGTT--TT--T---ATA--TCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TANAC------CTAATNAATGTANTTNTTGCTTAACACTGNTAAA--TACCTTACTGTCAT---TTA---TCG-TCATTATTTTAAGCCATACA-ATCATATA------GCATGGTTGACAAAC--TT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-AC-AGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATT-TTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTT---TTTAAAA-ATGCTTGTTAGGA-TTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGAT------CTGC----CCCCTTCGGGGTCTTAT----A-TTG-AAAA-----AAACCAC-----------CAA---------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTT--TT--T---ATA--TCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATTAATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAAT--ATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---GTT---CACTG--CAACTAAG-TTGATACT-TAT-AAAAGTG-TA-----GACTTAGGCGATAC-AC---TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATA-TT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TC---TCTgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TAT-AAAAGTGTTA-----GACTGAGGCGATA--AC---TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTGAT-------CGT--CTGTCAT---CAA---TTT-TCATCATTCTCAACAATATG-TTTATTTA------GCATGATGTACAGTG--TT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA-----TCTAACTGACAT-----------G-T----------AACCATGTG-TTCATGTA------GCATG------AAACGCTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTT--TT--TCT-ATA--TCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-TAA--AACA-TTATTGCT-AATTTCATCCCAAAATA-CC-TAAAT------NTcttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATA-TT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TT---TTTAAAA-ATGCT-GTCAGGA-TTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGAT------C-GCC-ATCCCCCTC---------T----AGTGAAAAAA-----AAACC-CATGAGATGCGCCA----------------GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTC-CTCGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTT--TT--TTCTATA--TCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGTAAGAA--A-TTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA-----TCTTACTGTCAT---TTA---TCG-TCATTATTTTAAGCCATACA-ATCATATA------GCATGGTTGACAAAC--TT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----TC----C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTT-TT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TT---TCTAAAACATACTTGTCAAGAAGTTTC--AAAATCCAGATTCGA--ATGTATTTCCTTCCGAT------C-GGTAA-CTCCTTC---------TCTTGA-T---AAAACTGATACGCC-C-----------CT----------------TTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTTC--T---AAA--TCAAACGCT---------ATTATAT-A--AG--CACT-TAA--A--A-TTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-A-TACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAATAATAACTTTG-----TAATGAAAA------AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GA-T-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATAACCTCT-GC----CCCCTTC---------T----A-T---TAAA-----AAACC-C-----------GAAAAATGGTACGTGTCTGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCACT-GCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTT--TTTCT---ATA--CCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGT-AAAAGTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATT-CATTAGAAATATGAGTAATGACAAATATTGTT-AAccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TAT-AGATGTG-TAACTTTAACTTTCACCTTTC-ACTG-TACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTT--TT--T---GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-TAAGCA--C-TTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATTTT--------ACTGTCA--------TTA------------A---TCG-TCAGTATTTACAGATACGCA-TTCATATACATGTCGCATGATTAACAAA---TT--CCAATTTTGCTCTTCT
gi|8 : AGTTGACTA----AACGTGCAT---TTCCTC--GAGTTAGACAACT----TTGTGC----ATTT--------GTCGTT--TT------------CAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAA--A--AATTAGA------CTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TACgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttgatcgcctcctccctctcttaaaaaaagatacgcgcctgttgtAATN----TT-TGCCATCATAT--------GTTGTT--TT--TCT-ATA--TCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-TAA--AACA-TTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG--AA--TG----ATGGT--------------G-TCATTGTTTTCAGACATACG-TTTAGATG------GTATGATTGACAATA--TT--TCAtgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 1 11 1111 1 555555 333333333333333333333333333333333333333333333333333333333333333 11 22222 111 22 1111 11 11111111 222222 33333333333 2222222 111111 88888888888888888888888888888888888 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 0 5555555 1 3 2222222222 8 11 11 0 111 1 3 8 0 0 3 0 2 3 22 1 0 0 9999 1 0 000000 000000000000000000000000000000000000000000000000000000000000000 33 2 0 33333 111 44 0000 44 3 0 88888888 66 666666 66 1 5 6 44444444444 5 2222222 4 4 11 444444 0 0 11111111111111111111111111111111111 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . . ....... . . .......... . .. .. . ... . . . . . . . . . .. . . . .... . . ...... ............................................................... .. . . ..... ... .. .... .. . . ........ .. ...... .. . . . ........... . ....... . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 3 5555555 0 7 8888888888 0 22 66 0 888 4 2 0 8 0 2 2 5 5 55 2 2 2 0000 2 0 555555 222222222222222222222222222222222222222222222222222222222222222 88 5 2 44444 777 77 6666 44 4 5 11111111 99 555555 99 0 4 6 44444444444 7 6666666 4 4 55 444444 4 7 88888888888888888888888888888888888 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTTTAAAA-ATGCTTGTCAGGATTTTTCGA-GAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC----A-CCCCTTC---------TA-T-NAAAAAAA--C-------C-C----------CNA---------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTCC-GAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTT--TTTCT---ATAT--CAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNT-AAAT--CCT-ACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAATATGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTTTAAAA-ATGCTTGTCAGGATTTTTTGA-GAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC----A-CCCCTTC---------TA-T-GAAAAAAA--C-------C-C----------CAA---------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTCT-GAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTT--TT--T---ATAT--CAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNT-AAAT--CCTTACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTTTAAAA-ATGCTTGTTAGGATTTTTTGA-GAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCC-------CCCTTCGGGGTCTTATA-TTGAAAAAAA--C-------CAC----------CAA---------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTT--TT--T---ATAT--CAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTCTgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG-----AT--CGT--CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTT-AA----TCTAACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTT--TTTCT---ATAT--CAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-TAA--AACA-TTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTTTAAAA-ATGCT-GTCAGGATTTTTTGA-GAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCC----ATCCCCCTC---------TAGT-GAAAAAAAAAC-------C-CATGAGATGCGCCA---------------GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCTC-GAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTT--TT--TTCTATAT--CAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGTAAGAA--A-TTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGAT-AA----TCTTACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTCTAAAACATACTTGTCAAGAAGTTTCAA--AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGT----AACTCCTTC---------TC-T-TGATAAAA--CTGATACGC-C----------CCT---------------TTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTTC--T---AAAT--CAAACGCT---------ATTATAT-A--AG--CACT-TAA--A--A-TTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCA-C-ATTT-------TGTTTGAAAG---TTTGTGATGAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCTCTGC-CCCCTTC---------TA-T-T-AAAAAA--C-------C-C----------GAAAAATGGTACGTGTCTGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCACT-GCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTT--TTTCT---ATAC--CAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTT--TT--T---GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-TAAGCA--C-TTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-TTACT------------------------GT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : AGTTGACTA----AACGTGCAT---TTCCTC--GAGTTAGACAACT----TTGTGC----ATTT--------GTCGTT--TT------------CAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAA--A--AATTAGA------CTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCT-AAAT--ACTgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttgatcgcctcctccctctcttaaaaaaagatacgcgcctgttgtAATN----TT-TGCCATCATAT--------GTTGTT--TTTCT---ATAT--CAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-TAA--AACA-TTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG--AA----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 444444 333333333 33333333333333333333333333333333333333333333333 11 22222 111 22 1111111 11111111 33333333333 2222222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 333333 8 222222222 88 99 33333333333333333333333333333333333333333333333 0 11 55 3 33333 111 4 44 6666666 3 0 88888888 77 1 5 6 44444444444 5 2222222 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ...... . ......... .. .. ............................................... . .. .. . ..... ... . .. ....... . . ........ .. . . . ........... . ....... . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 888888 0 000000000 66 00 88888888888888888888888888888888888888888888888 6 00 88 2 44444 777 2 33 0000000 4 5 11111111 55 0 4 6 44444444444 7 6666666 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC----N-CC-CCTTC---------TA-TT-AAAAAAA-A----C-------C-C----------CNA----------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC----A-CC-CCTTC---------TA-TN-AAAAAAA------C-------C-C----------CNA----------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCC-------C-CCTTCGGGGTCTTATA-TTGAAAAAAA------C-------CAC----------CAA----------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACTT----T-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : T----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-TAA--AACA-TTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCC----ATCC-CCCTC---------TAGTG-AAAAAAAAA----C-------C-CATGAGATGCGCCA----------------GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACTT----T--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGTAAGAA--A-TTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGT----AACT-CCTTC---------TC-TT-GATAAAA------CTGATACGC-C----------CCT----------------TTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAATT----T--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-TAA--A--A-TTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCTCTGC-CC-CCTTC---------TA-TT-AAAAAA---------------C-C----------CGAAAAATGGTACGTGTCTGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTGT---TT-CAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACTT----T--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-TAAGCA--C-TTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCC----T-CCTCCCTC---------TC-TT-AAAAAAAGATACGC-------G-C----------CT-----------------GTTGT--AG-------------TTGACTA----AACGTGCAT---TTCCTC--GAGTTAGACAACTT----TGTGC----ATTT--------GTCGTTTT--------CAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAA--A--AATTAGA------CTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATNT----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-TAA--AACA-TTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 1111111111111111111111111111111111111111 11 22222 111 22 1111 11 11111111 33333333333 2222222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 2222222222222222222222222222222222222222 0 11 55 3 33333 111 44 0000 44 3 0 88888888 77 1 5 6 44444444444 5 2222222 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. ........................................ . .. .. . ..... ... .. .... .. . . ........ .. . . . ........... . ....... . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 0000000000000000000000000000000000000000 6 00 88 2 44444 777 33 6666 44 4 5 11111111 55 0 4 6 44444444444 7 6666666 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-----AC-C-C----------CCA---------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-----AC-C-C----------CNA---------------GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAA-----AC-CAC----------CAA---------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-TAA--AACA-TTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAA-----AC-C-CATGAGATGCGCCA---------------GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGTAAGAA--A-TTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAACTGATACGC-C----------CCT---------------TTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-TAA--A--A-TTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA-------C-C-C----------GAAAAATGGTACGTGTCTGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-TAAGCA--C-TTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAAGAT--AC-G-CG---------CCT---------------GTTGT--AG-------------TTGACTA----AACGTGCAT---TTCCTC--GAGTTAGACAACT----TTGTGC----ATTT--------GTCGTTTT--------CAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAA--A--AATTAGA------CTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATN----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-TAA--AACA-TTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 11111111111111111111111111 11 11 22222 111 22 1111 11 11111111 33333333333 2222222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 11111111111111111111111111 44 0 11 55 3 33333 111 44 0000 44 3 0 88888888 77 1 5 6 44444444444 5 2222222 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. .......................... .. . .. .. . ..... ... .. .... .. . . ........ .. . . . ........... . ....... . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 66666666666666666666666666 66 6 00 88 2 44444 777 33 6666 44 4 5 11111111 55 0 4 6 44444444444 7 6666666 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-----AC-CCG--A-ATG-------CCT-GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-----AC-CC---------------CCA-GTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAA-----AC-CA---------------CCAAGTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-TAA--A--A-TTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-TAA--AACA-TTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAA-----AC-CCATGAGATGCG-----CCA-GTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGTAAGAA--A-TTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAACTGATACGCC---------------CCT-TTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-TAA--A--A-TTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA-------C-CCGAAAAATGGTACGTGTCT-GTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-TAAGCA--C-TTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAAGAT--AC-GCG--------------CCT-GTTGT--AG-------------TTGACTA----AACGTGCAT---TTCCTC--GAGTTAGACAACT----TTGTGC----ATTT--------GTCGTTTT--------CAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAA--A--AATTAGA------CTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATN----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-TAA--AACA-TTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 88888888888888888888888888888888 111 22222 111 111 1111 11 11111111 33333333333 22222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 00000000000000000000000000000000 0 111 5 3 33333 111 777 0000 44 00 0 88888888 77 1 5 6 44444444444 5 5 22222 3 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. ................................ . ... . . ..... ... ... .... .. .. . ........ .. . . . ........... . . ..... . . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 44444444444444444444444444444444 6 888 0 2 44444 777 000 6666 44 55 5 11111111 55 0 4 6 44444444444 7 7 44444 6 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-ACC-C--GA-A----------CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-ACC-C--GA-A----------TGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAA-ACCAC--CA-A-------------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATCAA---TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-T-AA--AACATTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAA-ACC-CATGAGA----------TGCGCC--AGTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGT-AAGAA--ATTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAA---C-T--GATA----------CGC--CCCTTTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-T-AA--A--ATTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA---CC-C--GA-AAAATGGTACGTGT--C--TGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-T-AAGCA--CTTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAAGATA-C--G-------------CGC--C--TGTTGT---------------AGTTGACTA----AACGTGCAT---TTCCT--CGAGTTAGACAACT----TTGTG----CATTT--------GTCGTTT--------TCAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAAA--A--ATTAG------ACTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATN----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-T-AA--AACATTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 77777777777777777777777777777777 111 22222 111 111 1111 11 11111111 33333333333 22222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 44444444444444444444444444444444 0 111 5 3 33333 111 777 0000 44 00 0 88888888 77 1 5 6 44444444444 5 5 22222 3 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. ................................ . ... . . ..... ... ... .... .. .. . ........ .. . . . ........... . . ..... . . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 88888888888888888888888888888888 6 888 0 2 44444 777 000 6666 44 55 5 11111111 55 0 4 6 44444444444 7 7 44444 6 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-ACC-C----GATA----------CGCC--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAA-ACC-C----GA-A----------CGCC--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAA-ACCAC----CA-A-----------------GTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATCAA---TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-T-AA--AACATTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAA-ACC-CATGAGATG----------CGCC--AGTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGT-AAGAA--ATTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAA---C-T----GATA----------CGCCCCTTTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAAT----TT--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-T-AA--A--ATTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA---CC-C----GA-AAAATGGTACGTGTC--TGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTG----TTTCAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACT----TT--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-T-AAGCA--CTTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAAGATA-C----G-------------CGCC--TGTTGT---------------AGTTGACTA----AACGTGCAT---TTCCT--CGAGTTAGACAACT----TTGTG----CATTT--------GTCGTTT--------TCAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAAA--A--ATTAG------ACTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATN----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-T-AA--AACATTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 5555555555555555555555555555555 111 22222 111 111 1111111 11111111 33333333333 22222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 5555555555555555555555555555555 0 111 5 3 33333 111 4 777 6666666 00 0 88888888 77 1 5 6 44444444444 5 5 22222 3 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. ............................... . ... . . ..... ... . ... ....... .. . ........ .. . . . ........... . . ..... . . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 6666666666666666666666666666666 6 888 0 2 44444 777 2 000 0000000 55 5 11111111 55 0 4 6 44444444444 7 7 44444 6 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAAACCC----GA-------TA--CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAAACCC----GA-------TA--CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAAACC---------------A--C-C--A--AGTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACTT----T-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : T----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-T-AA--AACATTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAAACCCATGAGA-------TG--CGC--C--AGTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACTT----T--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGT-AAGAA--ATTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAA--CT----GA-------TA--CGC--CCCTTTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAATT----T--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-T-AA--A--ATTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA--CCC----GAAAAATGGTA--CGTGTC--TGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTGT---TT-CAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACTT----T--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-T-AAGCA--CTTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAA--------GA-------TACGCGC--C--TGTTGT---------------AGTTGACTA----AACGTGCAT---TTCCT--CGAGTTAGACAACTT----TGTG----CATTT--------GTCGTTT--------TCAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAAA--A--ATTAG------ACTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATNT----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-T-AA--AACATTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 33333 111111 2222 222222222 11111 22 222222 111 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 3333333333 111 22222222 33333333 2222222 4444444444 22 1 111 111 11 1111 44444444444444444 11 5555555555555555555555555555555 111 22222 111 111 1111111 11111111 33333333333 22222 111111 66666666666666666666666666666666666 111111 111
lowQualScore : 00000 6 666666 0 1 4444 77 5 999999999 1 999 0 5 3 6 6 6 66666 22 8 99 6 3 3 333333 6666 8 444 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 8888888888 111 44444444 11111111 1 6 22 5555555 1 3 2222222222 8 11 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 44444444444444444 0 11 5555555555555555555555555555555 0 111 5 3 33333 111 4 777 6666666 00 0 88888888 77 1 5 6 44444444444 5 5 22222 3 4 4 11 444444 0 0 66666666666666666666666666666666666 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : ..... . ...... . . .... .. . ......... . ... . . . . . . ..... .. . .. . . . ...... .... . ... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . .......... ... ........ ........ . . .. ....... . . .......... . .. .. . ... . . ... .. . . . . .. . . . . .... . . ................. . .. ............................... . ... . . ..... ... . ... ....... .. . ........ .. . . . ........... . . ..... . . . .. ...... . . ................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 44444 7 444444 3 0 3333 99 7 777777777 7 666 6 7 5 7 7 7 77777 44 0 22 0 8 8 000000 4444 0 000 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 5555555555 777 22222222 00000000 0 7 88 5555555 0 7 8888888888 0 22 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 44444444444444444 6 00 6666666666666666666666666666666 6 888 0 2 44444 777 2 000 0000000 55 5 11111111 55 0 4 6 44444444444 7 7 44444 6 4 4 55 444444 4 7 66666666666666666666666666666666666 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAAACCC----GA-------TA--CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAAACCC----GA-------TA--CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAA-T-AGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGATACT-TATAAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG-----------ACT---CGA--------CA--TTTTGTTAAATGAATATTCAATTAAAAATGT---T-ATA-TGAATATTTTTGAGT-TT--TTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCCC-C----C-TTCGGGGTCTTATATT--GAAAAAAACC---------------A--C-C--A--AGTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT---TTTCTCTCGAGTTAGACAACTT----T-TGCGAACGTAT--------ATTGTTTTT---ATATCAAACATTTTCCCTTCAATTATTT-A-TAG--ATGT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TGATAAAATTACTTTATTGTCATGCATT-AATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGGT---AACG---CGA--------CACCCTCTTTT---TCAATATTGAAT-AAAAATATGAG--A-AATGAAAATATT-G----TT--TTC-AT--AAATT-TTT--AACGGTAGC-TCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA-----T-AGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGATACT-TATAAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG----A--TCG--T-CTGT----CATC-AA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTGTTAA---TCT--AACTGA----CAT--------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : T----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTATTTCACTAGC-AT-T-T-AA--AACATTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTACA----TGGGAACG---TGG--------CACCATTTT--A--TGGATATTGAAT-AAAAACATGG---ATAATGAAAATATT-G-----T--TTT-AT-CAA-TT-TTT--AACGACAGC-TTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCCATC----C-C-------CCTCTAGTGAAAAAAAAACCCATGAGA-------TG--CGC--C--AGTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTTCCT-CGAGTTAGACAACTT----T--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTATTTTA-TAA--GTCTGT-AAGAA--ATTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTGATAA---TCT--TACTGT----CATTTA---TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAG-AAAT-AGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATtctcactttagagctc
gi|3 : ttgatttaattttcaaatttactactgtaacagtacctgctTTT-AG--CGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCATA----T---AACT---CGAACCCCCCCCCCCTTTTTTT---TAAATATTGAAT-AAAAGTGTGAGT-A--ATGAATTTTTT-CA----T--TTT-AT-TAAATTGTT---AACGTAAAC-TTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGTAAC----T-C-------CTTCTCTT--GATAAAA--CT----GA-------TA--CGC--CCCTTTTTT--AGA-AAGATTAAAAGTTGATTT----AAAGTGCAT---TTCCTC--GAGTTAGACAAATT----T--GCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTATAT-A--AG--CACT-T-AA--A--ATTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtatttagcgacttcaacgaactcatgcgaatatttaactagtaaacagaacttgcacatataaaattcttccttttccttggtaaatcattctcaaagttgcaattaataagaatcaatatgaactcattcagtcttctcggctacagaaaatatcagcatataactcgaacccccccccccttttttttaaatattgaataaaagtgtgagtaatgaattttttcattttattaaattgttaacgtaaactttctaaaacatacttgtcaagaagtttcaaaatccagattcgaatgtatttccttccgatcggtaactccttctcttgataaaactgatacgccccttttttagaaagattaaaagttgatttaaagtgcatttcctcgagttagacaaatttgctaacatatgttgttgttctaaatcaaacgctattatataagcacttaaaattagaattaatttcatcccaaaataaattttacctaatatatgtcattcttg
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgcttttcatggcggtggagaaatagataatcctaattatgcctacttcgatactgtaattacaagtacattgcgactatgttgatcagtcttatttcttctttgtgcaaaaaaaaatatatcaaaacgagtcgtaTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GACACTGTATAA----TT-TA-----GACTCAATTGACACTAC-ATACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCACT----T---GGCTATCTGA--------CACCTTTTCCTA----GATATTAAAT-AATAACTT---T-GTAATGAAAA-----AAGTATTGCTTT-AT--AAA--GCTTCGAGCGGCACA-TTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCT-CTGCCC-C-------CTTCTATT--AAAAAA--CCC----GAAAAATGGTA--CGTGTC--TGTTTT--AGACATGATTAAAAGTTGATTC----GAAGTGTGT---TT-CAC-TGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCAT
gi|5 : -AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGATTCT-TGTAAAA-GTG-GG-----GACagaataagtatttccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCATATGGTT---AACT---TGA--------CACATATT------TGAATATTCATT-AGAAATATGAGTAATGACAAATATTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAA-AA-TTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT-CT-TATAGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCgttaaa
gi|7 : tGCAT---TTTCTC--GAGT-AGACAACTT----T--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-TTT-A-TA---AGCT-T-AAGCA--CTTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA--------------------CTGT----CATTAA---TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCCT-C----CTC-------CCTCTCTT--AAAAAAA--------GA-------TACGCGC--C--TGTTGT---------------AGTTGACTA----AACGTGCAT---TTCCT--CGAGTTAGACAACTT----TGTG----CATTT--------GTCGTTT--------TCAGGGAGTTTTCCTTCAATCATTT-A-TAAGCATTT-TAAA--A--ATTAG------ACTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTGCTAAA--TAC--Tgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATNT----T-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTATTTCATTAGC-AT-T-T-AA--AACATTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGG-AA-----------TG------ATG-G---T-G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAgataatctaactgt
blockSeqs : GAAA T GTATAG G AATT TG A CACGTTGA C G T A G . T ACTTT GG T TG A C C AAAAAA TTTC . ACA T ATTTT T GTG T ATAGGGATTTTTAAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAACTGAGTCTTTTG T T GA GTAAG C A ATTTGTATTT TTA TATCGCCGTTGA T C AA G C AAA C A A TAATGGT ATC ACCCCCCC TTTTC G . TA GAGTAAT A A AAGTATTGC . C AT G TCG G . GTT CA T C T TG G G ATT A . TCTGCCCC GA CCCGAAAAATGGTACGTGTCT GTA C G ATTTG GCA T TC AGCTTT ACATGTAT TC T C T CACTAGCAT G A AAC T G A AC ACGTAC ATAATCTTACTGTCATTTATCG C C . CATGTC TG GTG . T TC C TA
blockSeqs : AAA . . G AATT . . GTT T G . A . . . . GG . A A C T . TTTT . CA G GA . TA . TAGGAATTTTCCGAAAAGATCTTTATTTTGCATTTCTGATTGCAAAAATTG T T G CATG C . TATTTGATC C . . T . G C GTA . . . TATGGTT . . TTTTA G . CA GAGTA A A GTT . T AT G T A . . A T C G CA G T GA T . ATCCC . AACCCATGAGATGCGCCA A C A A . C CT TGT . C G C A ATAAGCATT . . GAA A . . TT . ATCGTCTGTCATCAATTT A C . . TT AAC . T TC C AG
blockSeqs : . . . C . . . GTA T G . A . . . . AT . . T A T . ATGA . G G GA . A . AAAAGAATTTTGTTTTCTATATCCGATTGTAAACATGCAATTTTTT T T A A A . TGTC T . . C . G C TT . . . CATGGG . . TATG G . TG GAGA T T CAT . . T . T T . . . . . . . . A AA C . AACTC . ACTGATACGCCCCT A . T G . T C TT . C C T A CATTAGCAT . . GCA A . . AT . TTAATCTAACTGACATG C C . . TT ATA . T TG C TA
blockSeqs : . . . T . . . GTT C A . T . . . . CA . . . . . . . . T TA . T . AACAGAACTTGCACATATAAAATTCTTCCTTTT T T G A C . CTC N . . C . T G AA . . . TAT . . CCTA A . CT GGAT A T GT . . A . . G . . . TCCTC . AGATACGCGCCT . . . A . C C TT . C G G A TATAAGTC . . AAC A . . TT . CTGTCATTAATCG C A . . TT AA . A TT T
blockSeqs : . . T . . . TT C A . . . . . . A AC . A . TGATTTCTTAAAATAATTTTAGTATGCTTTCT . G A A A . ANN A . . C . G T GT . . . CTT . . TG C . TA TGT T . . . C T . G T T T AAGCAC . . A A . . AC . GAATGATGGTG . A . . . C .
blockSeqs : . G . . . AT . . . . C T A T . CTC A . . . . . T . C G C . ATAAGC . . A T . . AA .
blockSeqs : . . A T . AT . . . . . . T . . T . . . . . . .
blockSeqs : . .
blockSeqCons : ***** G** ** CATGGT**** TNTG**** GAGTA** GT******** C* ANCTC************ ANCGATACGCGCCT***************** A**** C** TT***** C* ATAAGCAC*** GAN** ATNATCTCTGTCATCAATCG*************** ** TC
originalCons : TTTCATGACGGTGGAG-AA-T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC-GTACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCATA----T---AACT---CGA--------CACCTTTTTTTA--TGAATATTGAAT-AAAAACGTGAGT-ATAATGAANATTTT-GAGT-TT--TTT-AT-CAAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCN-C----C-C-------CTTCTATT--AAAAAAAACCC----GA-------TA--CGC--C--TGTTTT--AGACAGGATTAAAAGTTGATTC----GAAGTGCAT---TTTCTC-CGAGTTAGACAACTT----T-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTATTT-A-TAG--ATCT-T-AA--A--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGNTAAA--TCC--TACTGT----CATT-A---TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
finalCons : TTTCATGACGGTGGA-----T-AGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGATACT-TATAAAA-GTG-TA-----GACTTAGNCGATAC-AC--TACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCACATGGT----AACT---CGA--------CACCTTTTTNTG----AATATTGAAT-AAAAACGTGAGTA--AATGAANATTTTGT--------TTT-ATC-AAATTGTTT--AACGGCAGC-TTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCCANCTC------------CTTCTATT--AAAAAAANCGATACGCGCCT-----------------GTTTT--AGACAGGATTAAAAGTTGATTCA----AAGTGCAT---TTTCTC--GAGTTAGACAACTTTT-----GCCAACATAT--------GTTGTTTTTC-TATATCAAACANTCTCCCTTCAATTATTTATAAGCAC---T-T-AAGAN--ATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTGATNATCTCTGTCATCAATCG---------------TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG
Alignments
lowQualScore : 5555 111111 2222 222222222 1111 222222222 11111 22 2222222222222222222222 111111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 2222222222222222 222222222222 1111 22222222 222222222 1111 1 111 111 2222222 1 111 111 11 1111 2222222222222 111 444444444444444 111 22222 1111 111 1111 11111111 1 111111 66666666666666666666666666666666666666 111111 111
lowQualScore : 1111 666666 0 1 4444 77 5 999999999 1 999 0 5 5555 5 222222222 888 5 44444 1 33 77 55 3 9 8888888888888888888888 1 444444 6 3333 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 55 44444444 1 5 6666666666666666 888 0 0 555555555555 5 1 66 2 1 4444 6 6 6 44444444 3 666666666 6 4444 1 6 22 88 5 6 1 111 8 888 5555555 11 0 111 1 8 444 33 3 6 0 9 44 2 1 0 0 9999 1 8 9999999999999 0 444 333333333333333 99 0 111 5 3 00000 4444 000 0000 88 00 0 88888888 55 1 5 6 5 5 888 5 99 1 3 4 4 11 444444 0 0 33333333333333333333333333333333333333 6 1 6 999999 33 222 99 1 44 3 11 0
lowQualScore : .... ...... . . .... .. . ......... . ... . . .... . ......... ... . ..... . .. .. .. . . ...................... . ...... . .... . ............................................................................... . . .. ........ . . ................ ... . . ............ . . .. . . .... . . . ........ . ......... . .... . . .. .. . . . ... . ... ....... .. . ... . . ... .. . . . . .. . . . . .... . . ............. . ... ............... .. . ... . . ..... .... ... .... .. .. . ........ .. . . . . . ... . .. . . . . .. ...... . . ...................................... . . . ...... .. ... .. . .. . .. .
lowQualScore : 0000 444444 3 0 3333 99 7 777777777 7 666 6 7 3333 7 999999999 777 7 33333 5 22 77 00 5 8 9999999999999999999999 0 333333 7 7777 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 22 11111111 0 0 4444444444444444 444 5 1 666666666666 0 4 99 5 0 0000 7 7 7 55555555 7 777777777 7 2222 0 7 88 22 5 7 0 777 3 333 2222222 66 0 888 4 0 000 22 2 5 2 2 55 5 2 2 2 0000 2 0 0000000000000 6 000 444444444444444 44 6 888 0 2 88888 2222 222 6666 22 55 5 11111111 11 0 4 6 0 0 555 0 00 0 6 4 4 55 444444 4 7 00000000000000000000000000000000000000 7 0 7 222222 22 888 22 0 00 2 88 2
consensus : TTTCATGACGGTGGAGAAATAGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGAT-A--CT-TAT---------AAAA-GTG-TA-----GACTTAANCGATAC-AC--TACAAGTG-AGGTT------TATTT-TTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCAT-ATGG-TAACTCGA---------CA-CCTTTTTN--TGAATATTGAAT-AAAAACGTGAGTAAATGA-AAA---TATT---GTTTT---AT-CAAATTGTTT--AACGGCAG-CTTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC---NCCT------CCTTCTATT---AAAAAAACC---GA-------TACGCGCC-TGTTTT--AGACAGGATTAAAAGTTGATTCA----AAGTGCAT----TT--CCTCGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTAT-TT-ATAAGCACT-TAAAAAATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTG--AT--AAT--CT--CTGT-------CATTAA--TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
Reference ( family-22 ) : TTTCATGACGGTGGA----TAGATAATCCT------AATTATGATTCTTTNGAGACTGTAA----TT--AC-AA---G-T---CACTG--CGACTAAG-TTGAT-A--CT-TAT---------AAAA-GTG-TA-----GACTTAGNCGATAC-AC--TACAAGTGNAGGTT------TATTTTTTT-AA-ACGACTGCAACGAACTCGTGCGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CT-AA-AAGA---TCTTTNTTTTGTAAATTTT--ATT----AT-----T-G---C-----TTT-CT-CTTTTGTTTG-CAA---A----CNAT-T------ATC-------AA--AGTTGCAATT------------AATCAGAGATAAACATGAAG-TCATT--CAGTCATCTCGGCTACAG-NT-A-A-C-TCAGCAC-ATGG-TAACTCGA---------CA-CCTTTTTN--TGAATATTGAAT-AAAAACGTGAGTAAATGA-ANA---TTTT---GTTTT---AT-CAAATTGTTT--AACGGCAG-CTTTT---TAAAA-ATGCTTGTCAGGATTTTTCGAGAAACCAGCTTCGA--ATTTATCTCCTTCCGATC-GCC---ANCT------CCTTCTATT---AAAAAAANC---GA-------TACGCGCC-TGTTTT--AGACAGGATTAAAAGTTGATTCA----AAGTGCAT----TT--TCTCGAGTTAGACAACT----TT-TGCCAACATAT--------GTTGTTTTT-CTATATCAAACANTCTCCCTTCAATTAT-TT-ATAAGCACT-TAAGANATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTAATAAATGTAATTCTTGCTTAACACTG--AT--NAT--CT--CTGT-------CATCAA--TCG-TCATTATTTTCAGCCATGCGT-TCATATA------GCATGATTGACAAANTT--TCATTTTCGCTTCTCTACATGTATGAAGATCGATCT
gi|1 : TTTCATGACGGTAGAGGAATAGATAATCCT------AATTATAATTCTTTTGAGACTGTAA----TT--AC-AA---GAT---CACTGTGCGACTAAG-TTGAT-A--CT-TAT---------AAAAAGTA-CA-----GACTTGATTGATAC-ACAGTACAAGTGGAGGTT------TATTTTTTTTAA-ATAACTGCCACGAACTCGTGTGA----ATA-TT-A--ATT-ACAGTGTATGTA-TAGGGATTT--CTTAA-AAGA---TCTTTCTTCTGTCAATTTT--ATT----AT-----TCA---C-----TTTGCTGCGTTTGATTG-CAA---A----CAAT-T------ATC-------AA--AGTTACAATT------------AATAAGAGATAATCATGAAA-TCATT--CAGTCGTCTCGGCTAAAG-CT-A-A-C-TCAGCG---------ACTCGA---------CA-TTTTGTTAAATGAATATTCAATTAAAAATGT---TATATGA-ATA---TTTTTGAGTTTTTTTATTCAAATTGTTT--AACGACAGCCTTTT---TAAAA-ATGCTTGTTAGGATTTTTTGAGAAACCAGCTCCAG--TTTCATCTCCTTCCGATCTGCC---CCCTTCGGGGTCTTATATT---GAAAAAAAC----------------CACCAAGTTGT--AGACAGGATTAAAAGTTGATTC-----AAGTGCAT----TTTCTCTCGAGTTAGACAACT----TT-TGCGAACGTAT--------ATTGTTTT---TATATCAAACATTTTCCCTTCAATTAT-TT-ATAGATG-T-TA--AAATTAGAATT-AACTTCATCCCAAAATAGCT-TATAC------CTATTTAATGTATACCTTGTTTAACA-TG--ATAAAATTACT--TTATTGTCATGCATTAATTTCATTCATTATTTT-AGTCATGCATATGATATA------GCATGACCGACAAATATAATCAGTT--GTTT---------TATAAAGATCGATCT
gi|10 : GACGGTGGA----TAGATAATCCT------AATTATGATTCTTTGGAGACTGTAAAATTTT--AC-AA---G-TT--CACTG--CAACTAAG-TTGAT-A--CT-TAT---------AAAA-GTG-TA-----GACTTAGGCGATAC-AC--TGCAAGTGCAGGCT------TATTTCTTT-
gi|11 : aatctaattttcaactccatcgctttttcttnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTTG-CAA---A----TCAT-T------CTC-------AA--CGTTGTAATT------------AATCCAAGATGAATATGAAGTTCATT--CAGCCATCTCGGCTACAGAAA-A-A-C-TAAGCATAATGG-TAACGCGA---------CACCCTCTTTT--TCAATATTGAAT-AAAAATATGAG-AAATGA-AAA---TATT---GTTTTC--AT--AAATT-TTT--AACGGTAG-CTCTC---Tgtaaaaaa
gi|12 : TTTCTTGACGGTGGA----TAGATAATCCT------AATTAAGATTCTTTGGAGACTGTAAAATTTT--AC-AA---T-T---CA-TG--CAACTAAG-TTGAT-A--CT-TAT---------AAAA-GTGTTA-----GACTGAGGCGATA--AC--TGCAAGTGCAGCTT------TATTTTTT
gi|13 : taatctaattttcaactccatcagtttATTGAATTTC-TCCTAAAATAGTT-TACAT------CTAACAAATGTAATTCTTGCTTAATACTG--AT--CGT--CT----GT-------CATCAA--TTT-TCATCATTCTCAACAATATGT-TTATTTA------GCATGATGTACAGTGTT--TCATTTTCGCATCTTTACATATATGAAGAgta
gi|14 : AACACTG--TT--AAT--CTAACTGA-------CAT-------G-T----------AACCATGTGT-TCATGTA------GCATGA--AACG--CTT--TCATTTTCGTCTCTCAGCATGTATGAAGATCGATC
gi|15 : ----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAACCATTCTCCTGTCTATTAT-TTCACTAGCATT-TAAAACATTATTGCT-AATTTCATCCCAAAATACCT-cttttactttcaaagtctcgcatggttatgcaaaaataa
gi|17 : TTTGACAA---A----TCAT-TTATTTGATC-------AA--TGTTGCAATT------------AATCAAAGATAAATATGGAG-TTATC--CAGTCATCTaaatntttgccatcatatgttgttt
gi|18 : cttattttcaaAATT-AACTTCATCCCAAAATAAAT-TTTAC------CTAATAAATGTAATTCTTagctcgg
gi|2 : CTGCCACTAATTCATTCGA----ATA-CT-GTGATT-ACAGTTTATGTAATAGGGATTT--TT-AAGAAGAACTTTTTTTTTTTGTGTATTTCCGATTGCAAAC-----T-GAGTC-----TTT-TG-TTTTTGTTTA-CAACATG----CATT-T------ANN-------NN--NNNNNNNNNN------------NNNNNNNNNNNATCATCAAG-G-ATAAACA-CCATCTCGGCTACAG-TT-A-AAC-TCAGTAC-ATGG-GAACGTGG---------CA-CCATTTTA--TGGATATTGAAT-AAAAACATGGATAA-TGA-AAA---TATT---GTTTT---AT-CAA-TT-TTT--AACGACAG-CTTTT---TAAAA-ATGCT-GTCAGGATTTTTTGAGAAGCAAGTTTT-ATTATTTATCTCCATCCGATC-GCC---ATCC------CCCTCTAGTGAAAAAAAAACCCATGA-------GATGCGCC-AGTTTTGTAGACAGGATTAAAAATTGATTCATTTGAAGTGCATGCATTT--CCTCGAGTTAGACAACT----TT--GTCAACATATACATGTATGTTGTTTTTTCTATATCAAACAGTCCCCCTTCAATTAT-TTTATAAGT-CTGTAAGAAATTAGAATT-GACTTCATCCCAAAATAGCT-TATACACGTACCTAACGAATGTAATTCTGGCTTAACACTG--AT--AAT--CTTACTGT-------CATTTA--TCG-TCATTATTTTAAGCCATACAA-TCATATA------GCATGGTTGACAAACTT--TCATTTTGGCTTCTCTACATGCATAAAGATCGATCT
gi|3 : TTTCATGGCGGTGGAGAAATAGATAATCCT------AATTATGCCTACTTCGATACTGTAA----TT--AC-AA---G-TA--CATTG--CGACTATG-TTGATCAGTCT-TATTTCTTCTTT-----GTG-CA-----AA---AAAAAATAT-AT--CA-AAACG-AGTCG------TATTT------A-GCGACTTCAACGAACTCATGCGA----ATA-TTTA--ACT-A--------GTA---------------AA-CAGA---ACTTGCACATATAAA------ATT----CT-----T-C---C-----TTT--T-CCTTGGT-----AA---A----TCAT-T------CTC-------AA--AGTTGCAATT------------AATAAGA-ATCAATATGAAC-TCATT--CAGTCTTCTCGGCTACAG-AA-A-A-TATCAGCAT-AT----AACTCGAACCCCCCCCCC-CTTTTTTT--TAAATATTGAAT-AAAAGTGTGAGTAA-TGA-ATT---TTTTC--ATTTT---AT-TAAATTGTT---AACGTAAA-CTTTC---TAAAACATACTTGTCAAGAAGTTTCAA-AATCCAGATTCGA--ATGTATTTCCTTCCGATC-GGT---AACT------CCTTCTCTT---GATAAAACT---GA-------TACGCCCC-TTTTTT--AGA-AAGATTAAAAGTTGATTTA----AAGTGCAT----TT--CCTCGAGTTAGACAAA-----TT-TGCTAACATAT--------GTTGTTGTT-CTAAATCAAACGCT---------ATTA---T-ATAAGCACT-TA--AAATTAGAATT-AATTTCATCCCAAAATAAAT-TTTAC------CTAATATATGTCATTCTTGtctcactttagagctc
gi|4 : ttgatttaattttcaaatttactactgtaacagtacctgctTAATCCTGTATAGAAATATGTTTCTTTTCAAACTG-AA----TTTGAC-AACACG-TTGACATTA--TAACGAGG---GAC-A--CTGTAT---------AA----TT-TA-----GACTCAATTGACACTACA-TACATGTGAACA---------AATGATCG-AC-ACGACTGTAAAGAACTCGTGT-ATTTTGTA-TT-A--TTT-GCAGTGTATGTA-T---GATTT--CT-TA-AA-A---T------------AATTTT--AGT----AT-------G---C-----TTT-CT-CT---GATTG-CAA---GTAAGCAAT-T------ATTTGTATTTAATTACTTACCATTTATCGCCGTTGAAATCGGAGATAAACATGAAG-TCATT--CATTAACATCGGTTAGGC-GT-ACA-C-TTAGCAC-TTGGCTATCT-GA---------CA-CCTTTTCC--TAGATATTAAAT-AATAACTTT-GTAA-TGA-AAAAAGTATT---GCTTT---AT--AAA--GCTTCGAGCGGCAC-ATTTTGTTTGAAA---GTTTGT---GAT-------GAGACTATCTTCAA--ATTTATTTCCCTCCTATA-ACCTCTGCCC------CCTTCTATT---AAAAAACCC---GAAAAATGGTACGTGTC-TGTTTT--AGACATGATTAAAAGTTGATTCG----AAGTGTGT----TT--CACTGCCTTAGACAACTTAGCTT-TACTAACAGAT--------GCTGTTTTT-CTATACCAAACAGCTTCCCTTCAATCATAGA-ATAAGTATT-T
gi|5 : AGACAATCCT------AATTATGGTTTTTTTGAGAATGTAA----TT--CCAAA---A-T---CACT----GACT-TT-TTGAT-T--CT-TGT---------AAAA-GTG-GG-----GACccaaaatag
gi|5 : gacaaGGCTGCAACTAATTCGTGTTA----ATA-TT-T--ATTTACAGAGTATTTA-TAGGAATTTTCCG-AA-AAGA---TCTTTATTTTGCA---TTT--CTG----AT-----T-G---CAAAAATTG-------TTGTGAA-CAA---A----CTGT-TT-----GTC-------AA--AATTATGATT------------ATTCATAGATAAACATGA--------------CTTCTCAGCTATAG-GTAA-A-C-TCAGCAT-ATGGTTAACTTGA---------CA-CATATT----TGAATATTCATT-AGAAATATGAGT-AATGACAAA---TATT---GTTccccccccccccccaaaagaaaaaaaaaatcaacgtggctgcaactaattcgtgttaatatttatttacagagtatttataggaattttccgaaaagatctttattttgcatttctgattgcaaaaattgttgtgaacaaactgtttgtcaaaattatgattattcatagataaacatgacttctcagctataggtaaactcagcatatggttaacttgacacatatttgaatattcattagaaatatgagtaatgacaaatattgttaaa
gi|6 : gacaaagacaatcctaattatggtttttttgagaatgtaattccaaaatcactgactttttgattcttgtaaaagtggggacccccccccccccccaaaagaaaaaaaaaatcaacgtTTTCATGACGGTGGAAAATTAAATAATCGT------AATTGTGATTAGTTGGTTAATGTAA----TT--AC-AA---GTT---CACTA--CGACAAAATTTGAT----CT-TAT---------AGAT-GTG-TAACTTTAACTTTCACCTTTC-ACTGTACA-----AGGTTAAAAAATA-----TC-AACACGACTACAACAAAACCATGCAC----ATATTT-A--TTT-ACAGTGTATGCA---------------AA-AAGA---ATTTTGTTTTCTATATCCG--ATT----GTAAACAT-G---CAAT--TTT-TT-CTTTTGTCTT-CAA---A----CTATAT------AT-------------G-----------------------CAGAGATAAACACGAAG-TCATT--CTGTCAACTCGGCaaa
gi|7 : tGCAT----TT--TCTCGAGT-AGACAACT----TT--GTCAACATAG--------ACCGTTTTT-GTATTTCAAACATTGTCCCTTC-ATT-T-TT-ATAAG--CT-TAAGCACTTAAAATT-AATATAATCCAAATATAGC-------------------AACATAATT-----TTA---------------------CTGT-------CATTAA--TCG-TCAGTATTTACAGATACGCAT-TCATATACATGTCGCATGATTAACAAA-TT--CCAATTTTGCTCTTCT
gi|8 : GATC-GCC---TCCT------CCCTCTCTT---AAAAAAA-----GA-------TACGCGCC-TGTTGT---------------AGTTGACTAA----ACGTGCAT----TT--CCTCGAGTTAGACAACT----TTGTG----CATTT--------GTCGTTT--------TCAGGGAGTTTTCCTTCAATCAT-TT-ATAAGCATT-TTAAAAATTAG------ACTTTATCCCAAAATAGCT-TACAT------ATAATAAATGTAATTCTTGCTTAATACTG--CT--AAgtttaaggacattcttttcactataaagttccgacggtaatgcaaagata
gi|9 : ttAATN----TT-TGCCATCATAT--------GTTGTTTTT-CTATATCAAACATTCTCCTGTCTATTAT-TTCATTAGCATT-TAAAACATTATTGCT-AACTTCATCCCAAAATACCTAAAAAT------TTAATAAATTCATTTTTTGCTTAATACTGGAAT--GAT-------GGT-----------------G-TCATTGTTTTCAGACATACGT-TTAGATG------GTATGATTGACAATATT--TCAatactgataatctaactgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCCCCCCCCCCCATTTTTACTCTCAAGAGCAGAAAAAAAATAACATGGATGTACTTAGTTGTGTTATTTATACATTTCTATTTGAAATCTTCCACTAAGAGCGTTGGTTTG