lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2222222 1 44444444444444444 11 1 111 1111 111 111 1 1 11 111 11 2222 22222222222 11 11 3333333333333 11 1 1 66666666 11 333333 11 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1111 111 1111 22 11111 444444444444444 222222 111 11 88888888888888888888888888888888888888 11 1 1 444444444444
lowQualScore : 2 8888888 4 6 6 3 6 11111111111111111 5 0 5 5 0 4 88 1 5 555 5 5 3333 66 66 6 333 666 5 555 5 5 5 5 0 77 66 4 66 6 77 111 6 55 99 6 6 2 6 6 6 99 5555 6 3 6 99 99999999999 1 6 6 55 33 0 99 8 6666666666666 11 88 0 6 0 0 0 8 1 33333333 11 333333 8 11 8 8 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 4444 111 4444 55 6 99 66666 111111111111111 333333 8 8 777 33 0 8 5 8 8 8 33333333333333333333333333333333333333 00 7 0 1 0 6 1 777777777777 6 6 2 7 6
lowQualScore : . ....... . . . . . ................. . . . . . . .. . . ... . . .... .. .. . ... ... . ... . . . . . .. .. . .. . .. ... . .. .. . . . . . . .. .... . . . .. ........... . . . .. .. . .. . ............. .. .. . . . . . . . ........ .. ...... . .. . . . ............................................................................................ . .... ... .... .. . .. ..... ............... ...... . . ... .. . . . . . . ...................................... .. . . . . . . ............ . . . . .
lowQualScore : 2 3333333 0 7 7 3 7 88888888888888888 7 1 7 7 7 0 33 4 0 333 0 0 0000 99 99 0 888 000 0 999 0 0 0 0 0 88 99 1 00 7 77 777 7 88 22 7 7 5 7 7 7 22 7777 7 2 7 22 00000000000 7 7 7 00 66 8 00 0 0000000000000 00 88 8 0 8 6 8 0 4 66666666 00 000000 0 00 0 0 8 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 2222 777 2222 00 7 22 00000 222222222222222 000000 0 8 555 88 2 0 0 0 0 0 88888888888888888888888888888888888888 00 3 0 2 2 2 2 555555555555 5 5 5 0 0
consensus : TATGTGA---TATAANGTG-TT-AT-TTTGAGG-TTTTTAAACTTAA---A---A---TAA-CTAAAA-TAAAGTATTGATAATCCAATTAAATA-CTTGTAAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAGTATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AA-AGTTGT--TA---G----AGA--AT-TAG-TTTAGTGAATTCAA-ATCACTT---CTA--TAGT--CAGCA--GC--T-C--AG-AGCTTGCA-GAT---GATAG--TTTTC-T--T----T-GC-TCATCCATAGCCGGT--AGATCCATTT-GACAG---TTTA-AC-TGACCGTAT-AC----A--TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT--A-------TC---AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATG-AAT-GAGT-T----------TTGTTAGAT--AG-A-----GAG-A-A-GAGAGAAAGAGAGAACA-TGCGATGGTTTAATCGTTTT--AAGTG--TAAAGTTACACTGAATAAGGCAGATATGA
Reference ( gi|4 ) : TATGTAA---TATAAAGTG-TT-AT-TTTGAGG-TTTTTAAACTTAA---A---A---T---CCAAAA-TAAAGTATTGATAATCTAATTAAATA-TTTGTAAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAACATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AA-AGTTG---TA---G----AGA--AT-TAG-TTTAGTGAATTCAA-ATCACTT---TTATATAGT--CAGCA--A---T-C--AG-AGCTTGCA-GATCAAGATA---TTTTC-TCATCCACGAGC-TCATCCATAGCTAGT--AGATCTATTTCAACAG---TTTA-AT-TGACCATAT-ACG---A--TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT--A-------TT---AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATG-AAT-GAGT-T----------CTGTGAGAT--AG-A-----GAG-AGA-GAGAGAAAAGGAGAACA-TGCAATGGTTAAATCGTTTT--AAGTA--TAAAGTTACACTGAATAAGGCAGATATAA
gi|5 : TATGTGA---TA--ATGTG-TT-AT-TTTGAGGGTTTTTAAACTTAA---A---A---TAATTTAAAA-TAAAGTATTGATAATCTAATTAAATA-CTTGTAAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AGTATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AA-AGTTGTCATA---G----AGAATAT-TAG-TTT-GTG-ATTCAA-ATCATTT---CT---TAGTAGCAGCA--GC--T-C--AG-AGCTTGCA-GATC--GATAGTCTTTACTTCTTTTGCTAATATTATCCAT--CCAATACAGA---ATTT-GACAG---TTTG-AC---AGTATAT-AT----A--TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT--ATCAACAGTC---AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATG-AAT-GAGT-T----------TT
gi|1 : TGTGTAAGTGTGTAAACTGGTT-ATGTTTGAGG-TTTTTAAACTTAA---A---AATAT---CTAAAAATAAA-TATTGATAATCTAATTAAATA-TTTGTATA--AGGCGAAACA-AATCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAGTATA-AGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAA-AGTTG---TATATG----AGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCTTAGTCAGT--CAACA--G---TCC--AGCAGCTTGCATGAT---GATA---GTTTT-T---------GC-C--TCT-TTGCAA----AATTCCATTT-GACAGT--TTTA-AC-GTATCAT-T----------TTGAAGAC-TTAAAT----GT---AAGT----TCTCTGTCTA-TC--Aagttatacatat
gi|9 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttattATGTGA---TA--ATGTG-TT-AT-TTTGAGG-TTTTTAAACTTAAGATA---A---T---CTTAAA-TAAAGTGTTGATAATCCAATTTAATA-TTTGTAAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTAT-TGTCAG-TATTTTTC-TATTGG--TCAGTATAC--GTATCCTTGAATTTTATTGGA-AGGT
gi|8 : TGTGA---TA---AGTG-T--ATATTTGAGG-TTTT-AAACTTAA---ATAAA---T---CTAAAA-TAAAGTATTGATAATCTAATTAAATA-TTTGTAAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAGTATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AA-AGTTGTA-TA---G----AGA--A--TAG-TTTAGTGAATTC-A-ATCATTT---C----TAGT--CAGCA--ACAGT-CAGAG-AGCTTGCA-G----AGATAG--TTTTC------------C-TCTTT----GCAA----AATTCCATTT-GACAG---TTTA-A------CGTAT-AC----ATTTTGAAGAC-TTAAAA----GT---AAGT----TCTCTATCTA-TC--AACT---ATTTCT--A-------TA---AAC------TA-Tat
gi|6 : gATAATGTG-TT-AT-TTTGAGG-TTTTTAAATTTAA---A---A---TAAACTAAAA-TAAAGTATTAATATTCCAATCAAATA-CTTGTAAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAG--------------------TGG--TCAG--TGTAAGTATCCTCAAATCTT---------------TAGGTC--AA-AGTTG---TA---C----AGA--AT-GAGATTTAGTTAATTCAA-ATCACCT---CTACATAGT--CAGCA--G---T-C--AG-AGCTTGAC-GAT----ATA---TTTT-------------T-TCATCCATAGCTGGT--AGATCCATTT-GACAG---T-----T-TGACCATAT-ATACATA--TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT--A-------TT---AAC------AA-TATCGACAGT---ATGA--ATGGAAGTGTG-ACAATG-AAT-GAGT-T----------TTG
gi|3 : atgtgtgAAATG-TTTAT-TTT-AG---TTTTAAACT-AA---A---A---TAA-TTAAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-AC-TAAT-AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAG--TTTTAGTGTCAT-TA-TAGTC-TATTGG--TT--CATATACTTATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTG---TG---GTAACGGA--ATATAGCTTTAGTG-ATTCAA-ATCACTC--------TAGC--TAGCATCA---T-C--AT-A--TTGCA-TAT----AT----TTTTC-T--TCCATT-GC-TTA-----AG--GGT--ACA--GATTT-GACAGGGTTTTACATATAA--ATAT-A-----G--TTGAAGACCTT-AAA----TT---AAGT----TCTT--TCTATTT--AA-T---ATTTCT--A-------TC---AACATCAAACA-TATCTA-AAT---ATGA--ATGTAAGTATG-A-AATT-AAT-GATT-TTATTTACATACT-TTAGATTAGG-A-----GAG-A-A-GATAGAAAATG----CA-TTTGGTGTTTTAGTCGTTTTTAAAGGG--T-AAGTTACACT-AATAA-GCAG-TATGcttata
gi|13 : tgtatggtAA-TAAAGTATTGATATTCCAATTAAATA-CTTGTAAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|11 : -TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--Tt
gi|12 : -TGACTGTATTACAT--A--TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTA-CTCTAA-CTCAATTTCTTAG-------CTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATG-AATGGAGTAT----------CTatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|7 : ttatccattcaatctatgacacgttgAAGTATG-AGAATGAAAT-GAGT-T----------TAGTTATAC--AGTATCTGTGAGTAGATGAGCGAAAGAGAGAACATTGCAATGGTT-AATCGTATT--A--TACTTAAA-TTACACTAGATTAGGCAAGTAttaaagattatacatgatact
gi|15 : TGTGAGAT--AG-A-----G--------AGAGAAAGAGAGAATA-TGCATTGGTTTATTCGTTTT--AAG----TAAAGTTACACTGAATAAGGCAGATATGatgatattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|16 : A-CGCAATAATTAAATAGTTT---AAGTG----AAATTACACTGAATAAGGCAGAt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 11 1111 11 333 111 1 333333333 1111 222 2222 000000000000000000000000000000000000000000000000000000000 1111111 11 55555555555555555555555555 1111 111 1111 22 11111 3333333333333 111111 111 11 555555555555555555555 11111 111 11111 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 4 4 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 33 0 5 5 77 7777 222 5 0 4 5 11 99 55 6 999 000 99 6 3 7 6 6 888888888 99 4444 555 99 6 99 5555 6 000000000000000000000000000000000000000000000000000000000 8888888 5 33 55555555555555555555555555 4 2222 000 2222 11 5 77 11111 6 0000000000000 999999 6 5 444 11 6 2 6 6 66 3 888888888888888888888 3 0 8 99999 0 1 111 11111 3 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . .. .... ... . . . . .. .. .. . ... ... .. . . . . . ......... .. .... ... .. . .. .... . ......................................................... ....... . .. .......................... . .... ... .... .. . .. ..... . ............. ...... . . ... .. . . . . .. . ..................... . . . ..... . . ... ..... . . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 4 4 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 66 7 7 7 99 4444 999 7 1 3 7 44 88 88 7 000 222 22 7 3 3 7 7 000000000 22 2222 222 22 7 88 0000 7 888888888888888888888888888888888888888888888888888888888 6666666 7 66 11111111111111111111111111 3 1111 000 1111 44 7 99 88888 7 3333333333333 222222 7 0 000 00 7 5 7 7 33 2 888888888888888888888 2 2 0 88888 8 4 888 44444 2 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AA-AGTTGTA-TA-G-AGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TC--T---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACA--GTTT-A----TGACCGTAT----AC-A--TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-GTTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGC----AATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCCAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AA-AGTTGT--TA-G-AGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TC--T--ATAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACA--GTTTAAC---TGACCGTAT----AC-A--TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-GTTAGATA---G--------AG-A-GA-AGAGAGAAAGAGAGAACA-TGC----GATGGTTTAATCGTTTT--AAGTGTAAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAA-AGTTGTA-TATG-AGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTC--T---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------T----T-T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACA--GTTT------TAA-CGTAT-----C-ATTTTGAAGA-CTTAAAT----GT---AAGT----TCTCTGTCTA-TC--A
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC-GTTG------TGACTGTATTAC-AT-A--TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTA-CTCTAA-CTCAATTTCTTA-------GCTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-TTTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-GTGAGATA---G--------AG-A-G------AGAAAGAGAGAATA-TGC----ATTGGTTTATTCGTTTT--AA--GTAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGC----AATAATTAAATAGTTT---AAGTG--AAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAGT-TTTAGT-GTCAT-TA-TAGTC-TATTGG--TT--CATATACT-TATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTGTGGTA-ACGGA--ATATAGCTTTAGTG-ATTCAA-AT-CACT-C-------TAGC--TAG----CATCA-TC--AT-A--TTGC---AT----ATATT------TT---TCTTCCAT-T------GC-----TTA-----AG--GGT--ACA----GATT-------T-GACAGGGTTTTACATATAA--ATAT----A--G--TTGAAGACCTT-AAA----TT---AAGT----TCTT--TCTATTT--AA-T---ATTTCT-A-------TC----AACATCAAACA-TATCTA-AAT---ATGA--ATGTAAGTATG-A-AATTAA-T-GATTTTA-TTTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAGGGT-AAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AA-AGTTG---TA-G-AGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTAT--ATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCT----CATCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACA--GTTTAAT---TGACCATAT----ACGA--TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTCT-GTGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGC----AATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AA-AGTTGTCATA-G-AGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TC--T---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTT----T-T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACA--GTTTGAC-----AGTATAT----AT-A--TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-ATCAACAGTC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTTAGTTA
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AA-AGTTG---TA-C-AGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TC--TACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T----------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACA--GTT-------TGACCATATATACAT-A--TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------AA-TATCGACAGT---ATGA--ATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTtacatat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-GTTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGC----AATGG-TTAATCGTATT--ATACTTAAA-TTACACTAGATTAGGCAAGTAATGAtata
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AA-AGTTGTA-TA-G-AGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC------TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCT----T-T------GC-----AAA---AT--------------TCCATT-------T-GACA--GTTTAA--------CGTAT----AC-ATTTTGAAGA-CTTAAAA----GT---AAGT----TCTCTATCTA-TC--AACT---ATTTCT-A-------TA----AAC------TA-Ttattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTA-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 11 1111 11 1111 1 2222222 1111 222 2222 000000000000000000000000000000000000000000000000000000000 1111111 111 4444444444444444444444444444 1111 111 1111 22 11111 3333333333333 111111 111 11 555555555555555555555 1111 111 11111 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 4 4 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 33 0 5 5 77 7777 222 5 0 4 5 11 99 55 4444 99999 99 6 3 7 6 6 7777777 99 4444 555 99 6 99 5555 6 000000000000000000000000000000000000000000000000000000000 8888888 5 000 7777777777777777777777777777 4 2222 000 2222 11 5 77 11111 6 0000000000000 999999 6 5 444 11 6 2 6 6 9999 1 222222222222222222222 3 0 8 7777 0 1 111 44444 3 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . .. .... ... . . . . .. .. .. .... ..... .. . . . . . ....... .. .... ... .. . .. .... . ......................................................... ....... . ... ............................ . .... ... .... .. . .. ..... . ............. ...... . . ... .. . . . . .... . ..................... . . . .... . . ... ..... . . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 4 4 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 66 7 7 7 99 4444 999 7 1 3 7 44 88 88 2222 22222 22 7 3 3 7 7 7777777 22 2222 222 22 7 88 0000 7 888888888888888888888888888888888888888888888888888888888 6666666 7 000 4444444444444444444444444444 3 1111 000 1111 44 7 99 88888 7 3333333333333 222222 7 0 000 00 7 5 7 7 1111 0 555555555555555555555 2 2 0 0000 8 4 888 22222 2 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACCG--TAT----AC-AT----TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACCG--TAT----AC-A-----TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAAAGTT----GT-ATATGAGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCT---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------T----T-T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACAG---TTT---TAA-CG--TAT-----C-ATT---TTGAAGA-CTTAAAT----GT---AAGT----TCTCTGTCTA-TC--A
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC---GTTG--TGACTG--TATTAC-AT-A-----TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTA-CTCTAA-CTCAATTTCTTA-------GCTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-T-TTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-G-TGAGATA---G--------AG-A-G------AGAAAGAGAGAATA-TGCA----TTGGTTTATTCGTTTT--AA--GTAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGCA----ATAATTAAATAGTTT---AAGTG--AAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAGT-TTTAGT-GTCAT-TA-TAGTC-TATTGG--TT--CATATACT-TATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTGTGGT-A-A-CGGA--ATATAGCTTTAGTG-ATTCAA-AT-CACT---C---TAGC--TAG----CATCA-TC--AT-A--TTGC---AT----ATATT------TT---TCTTCCAT-T------GC-----TTA-----AG--GGT--ACA----GATT-------T-GACAGGGTTTTA------CA--TAT----AA-ATATAGTTGAAGACCTT-AAA----TT---AAGT----TCTT--TCTATTT--AA-T---ATTTCT-A-------TC----AACATCAAACA-TATCTA-AAT---ATGA--ATGTAAGTATG-A-AATTAA-T-GATTTTA-T-TTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAGGGT-AAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----G---TA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTATATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCT----CATCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACAG---TTTAATTGACCA--TAT----ACGA-----TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTCT-G-TGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGCA----ATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AAAGTT----GTCATA-GAGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TCT---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTT----T-T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACAG---TT----TGACAGTATAT----AT-A-----TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-ATCAACAGTC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTTAG-TTATACA---
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AAAGTT----GT-AC---AGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TCTACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T----------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACAG---TT----TGACCA--TATATACAT-A-----TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------AA-TATCGACAGT---ATGA--ATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTTATAtat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-G-TTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGCA----ATGG-TTAATCGTATT--ATACTTAAA-TTACACTAGATTAGGCAAGTAATGA
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AAAGTT----GT-ATA-GAGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC----TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCT----T-T------GC-----AAA---AT--------------TCCATT-------T-GACAG---TTTA----A-CG--TAT----AC-ATT---TTGAAGA-CTTAAAA----GT---AAGT----TCTCTATCTA-TC--AACT---ATTTCT-A-------TA----AAC------TA-Ttattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTA-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 1111 11 1111 1 2222222 1111 222 000000000000000000000000000000000000000000000000000000000000000000 1111111 111 33333333333 333333 1111 111 1111 22 11111 3333333333333 111111 111 11 555555555555555555555 1111 111 11111 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 8 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 77 5 5 1 5 5 77 7777 222 5 4 5 7 99 55 4444 99999 99 6 3 6 6 7777777 99 4444 555 99 6 6 111111111111111111111111111111111111111111111111111111111111111111 8888888 5 000 00000000000 5 555555 4 2222 000 2222 11 5 77 11111 6 0000000000000 999999 6 5 444 11 6 2 6 6 9999 1 222222222222222222222 3 0 8 7777 0 1 111 44444 3 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . . . .. .... ... . . . . .. .. .... ..... .. . . . . ....... .. .... ... .. . . .................................................................. ....... . ... ........... . ...... . .... ... .... .. . .. ..... . ............. ...... . . ... .. . . . . .... . ..................... . . . .... . . ... ..... . . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 9 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 99 7 7 7 1 7 99 4444 999 7 3 7 9 88 88 2222 22222 22 7 3 7 7 7777777 22 2222 222 22 7 7 888888888888888888888888888888888888888888888888888888888888888888 6666666 7 000 33333333333 7 444444 3 1111 000 1111 44 7 99 88888 7 3333333333333 222222 7 0 000 00 7 5 7 7 1111 0 555555555555555555555 2 2 0 0000 8 4 888 22222 2 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCATG-TT-C-TA-TTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTT-AGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCTT----T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACA-TA---TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCATG-TT-C-TA-TTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTT-AGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCTT----T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACA-T----TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCATG-TCGCATA-TTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT--GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAAAGTT----GT-ATATGAGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCT---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------TT----T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACAG---TTT---TAA-C--GTAT--CATT----TTGAAGA-CTTAAAT----GT---AAGT----TCTCTGTCTA-TC--A
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCATG-TT-C-GA-TTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC---GTTG--TGACT--GTATTACA-TA---TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTA-CTCTAA-CTCAATTTCTTA-------GCTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-T-TTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCATG-TT-T-TA-TTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-G-TGAGATA---G--------AG-A-G------AGAAAGAGAGAATA-TGCA----TTGGTTTATTCGTTTT--AA--GTAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGCA----ATAATTAAATAGTTT---AAGTG--AAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGGTT-C-TAATTACTA-A-TCGTATA-A-CA-AGT-ATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TAT---CA-TTA-G-ACCA-TAGAT-GGA-A-AC-TAG--TTTTAGTG-TCAT-TATAGT-C-TATTGG--TT--CATATACT-TATCCTT----TTTATTGTA-AG-TC--ATAG--C--AAGATTTGTGGT-A-A-CGGA--ATATAGCTTTAGTGA-TTCAA-AT-CACT-C-----TAGC--TAG----CATCA-TC--AT-A--TTGCA-TAT----AT--T------TT---TCTTCCATT------GC-----TTA-----AG--GGT--ACA--G--ATT-------T-GACAGGGTTTTA------C--ATAT-AAA-TATAGTTGAAGACCTT-AAA----TT---AAGT----TCTT--TCTATTT--AA-T---ATTTCT-A-------TC----AACATCAAACA-TATCTA-AAT---ATGA--ATGTAAGTATG-A-AATTAA-T-GATTTTA-T-TTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAGGGT-AAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCATA-TT-C-TA-TTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTT-AGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----G---TA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTATATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCTCA---TCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACAG---TTTAATTGACC--ATAT-ACG-A----TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTCT-G-TGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGCA----ATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCATGTTT-C-TA-TTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTT-AGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AAAGTT----GTCATA-GAGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TCT---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTTT----T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACAG---TT----TGACA--GTAT-ATA-TA---TTGAAGACCTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-ATCAACAGTC----AAC------TA-TATCTAGAGT---ATGA--ATGGAAGTATG-AGAATGAA-T-GAGTTTTAG-TTATACA---
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCTG-TT-C-TA-TTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTT-AGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AAAGTT----GT-AC---AGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TCTACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T---------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACAG---TT----TGACCATATAT-ACA-TA---TTGAAGACTTTAAAA----GT---AAGT----TCTT--TCTA-TT--AA-T---ATTTCT-A-------TT----AAC------AA-TATCGACAGT---ATGA--ATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTTATAtat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-G-TTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGCA----ATGG-TTAATCGTATT--ATACTTAAA-TTACACTAGATTAGGCAAGTAATGA
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCATG--T-C-TA-TTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTT-AGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AAAGTT----GT-ATA-GAGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC----TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCTT----T------GC-----AAA---AT--------------TCCATT-------T-GACAG---TTTA----A-C--GTAT-ACATT----TTGAAGA-CTTAAAA----GT---AAGT----TCTCTATCTA-TC--AACT---ATTTCT-A-------TA----AAC------TA-Ttattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCATG-TT-C-CA-TTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTT-A-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 11 1111 11 1111 1 2222222 1111 222 2222 000000000000000000000000000000000000000000000000000000000 1111111 111 33333333333 111 1111 111 1111 22 11 11111 3333333333333 22222222 111 11 444444444444 111 22 1111 111 11111 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 4 4 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 33 0 5 5 77 7777 222 5 0 4 5 11 99 55 4444 99999 99 6 3 7 6 6 7777777 99 4444 555 99 6 99 5555 6 000000000000000000000000000000000000000000000000000000000 8888888 5 000 00000000000 5 000 4 2222 000 2222 11 33 11111 6 0000000000000 33333333 5 444 11 6 2 6 6 9999 1 666666666666 111 00 3 3 0 8 7777 0 1 111 44444 3 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . .. .... ... . . . . .. .. .. .... ..... .. . . . . . ....... .. .... ... .. . .. .... . ......................................................... ....... . ... ........... . ... . .... ... .... .. .. ..... . ............. ........ . ... .. . . . . .... . ............ ... .. . . . . .... . . ... ..... . . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 4 4 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 66 7 7 7 99 4444 999 7 1 3 7 44 88 88 2222 22222 22 7 3 3 7 7 7777777 22 2222 222 22 7 88 0000 7 888888888888888888888888888888888888888888888888888888888 6666666 7 000 33333333333 7 000 3 1111 000 1111 44 66 88888 7 3333333333333 77777777 0 000 00 7 5 7 7 1111 0 555555555555 000 88 0 2 2 0 0000 8 4 888 22222 2 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAAAGTT----GT-ATATGAGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCT---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------T----T-T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACAG---TTT---TAA-C--GTAT--CATT---TTGAAGA-CTTA----AATGT---AAGT----TCTCTGTCTA--TCA
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC---GTTG--TGACT--GTATTACATA---TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTACTCTAA-CTCAATTTCTTA-------GCTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-T-TTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-G-TGAGATA---G--------AG-A-GA------GAAAGAGAGAATA-TGCA----TTGGTTTATTCGTTTT--AA--GTAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGCA----ATAATTAAATAGTTT---AAGTG--AAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAGT-TTTAGT-GTCAT-TA-TAGTC-TATTGG--TT--CATATACT-TATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTGTGGT-A-A-CGGA--ATATAGCTTTAGTG-ATTCAA-AT-CACT---C---TAGC--TAG----CATCA-TC--AT-A--TTGC---AT----ATATT------TT---TCTTCCAT-T------GC-----TTA-----AG--GGT--ACA----GATT-------T-GACAGGGTTTTA------C--ATAT-AAATATAGTTGAAGACCTT-----AAATT---AAGT----TCTT--TCTAT-TTAA-T---ATTTC-TA-------TC----AACATCAAAC-ATATCTA-AAT---ATG--AATGTAAGTATG-A-AATTAA-T-GATTTTA-T-TTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAGGGT-AAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----G---TA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTATATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCT----CATCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACAG---TTTAATTGACC--ATAT-ACG-A---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TT----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTCT-G-TGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGCA----ATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AAAGTT----GTCATA-GAGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TCT---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTT----T-T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACAG---TT----TGACA--GTAT-ATATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TATCAACAGTC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTTAG-TTATACA---
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AAAGTT----GT-AC---AGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TCTACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T----------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACAG---TT----TGACCATATAT-ACATA---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TT----AAC------A-ATATCGACAGT---ATG--AATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTTATAtat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-G-TTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGCA----ATGG-TTAATCGTATT--ATACTTAAA-TTACACTAGATTAGGCAAGTAATGA
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AAAGTT----GT-ATA-GAGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC----TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCT----T-T------GC-----AAA---AT--------------TCCATT-------T-GACAG---TTTA----A-C--GTAT-ACATT---TTGAAGA-CTTA----AAAGT---AAGT----TCTCTATCTA--TCAACT---ATTTC-TA-------TA----AAC------T-ATtattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTA-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 11 1111 11 1111 1 2222222 1111 222 2222 000000000000000000000000000000000000000000000000000000000 1111111 111 33333333333 111 1111 111 1111 22 11 11111 3333333333333 22222222 111 11 444444444444 111 22 1111 111 11111 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 4 4 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 33 0 5 5 77 7777 222 5 0 4 5 11 99 55 4444 99999 99 6 3 7 6 6 7777777 99 4444 555 99 6 99 5555 6 000000000000000000000000000000000000000000000000000000000 8888888 5 000 00000000000 5 000 4 2222 000 2222 11 33 11111 6 0000000000000 33333333 5 444 11 6 2 6 6 9999 1 666666666666 111 00 3 3 0 8 7777 0 1 111 44444 3 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . .. .... ... . . . . .. .. .. .... ..... .. . . . . . ....... .. .... ... .. . .. .... . ......................................................... ....... . ... ........... . ... . .... ... .... .. .. ..... . ............. ........ . ... .. . . . . .... . ............ ... .. . . . . .... . . ... ..... . . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 4 4 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 66 7 7 7 99 4444 999 7 1 3 7 44 88 88 2222 22222 22 7 3 3 7 7 7777777 22 2222 222 22 7 88 0000 7 888888888888888888888888888888888888888888888888888888888 6666666 7 000 33333333333 7 000 3 1111 000 1111 44 66 88888 7 3333333333333 77777777 0 000 00 7 5 7 7 1111 0 555555555555 000 88 0 2 2 0 0000 8 4 888 22222 2 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAAAGTT----GT-ATATGAGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCT---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------T----T-T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACAG---TTT---TAA-C--GTAT--CATT---TTGAAGA-CTTA----AATGT---AAGT----TCTCTGTCTA--TCA
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC---GTTG--TGACT--GTATTACATA---TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTACTCTAA-CTCAATTTCTTA-------GCTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-T-TTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-G-TGAGATA---G--------AG-A-GA------GAAAGAGAGAATA-TGCA----TTGGTTTATTCGTTTT--AA--GTAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGCA----ATAATTAAATAGTTT---AAGTG--AAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAGT-TTTAGT-GTCAT-TA-TAGTC-TATTGG--TT--CATATACT-TATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTGTGGT-A-A-CGGA--ATATAGCTTTAGTG-ATTCAA-AT-CACT---C---TAGC--TAG----CATCA-TC--AT-A--TTGC---AT----ATATT------TT---TCTTCCAT-T------GC-----TTA-----AG--GGT--ACA----GATT-------T-GACAGGGTTTTA------C--ATAT-AAATATAGTTGAAGACCTT-----AAATT---AAGT----TCTT--TCTAT-TTAA-T---ATTTC-TA-------TC----AACATCAAAC-ATATCTA-AAT---ATG--AATGTAAGTATG-A-AATTAA-T-GATTTTA-T-TTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAGGGT-AAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----G---TA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTATATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCT----CATCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACAG---TTTAATTGACC--ATAT-ACG-A---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TT----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTCT-G-TGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGCA----ATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AAAGTT----GTCATA-GAGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TCT---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTT----T-T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACAG---TT----TGACA--GTAT-ATATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TATCAACAGTC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTTAG-TTATACA---
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AAAGTT----GT-AC---AGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TCTACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T----------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACAG---TT----TGACCATATAT-ACATA---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TT----AAC------A-ATATCGACAGT---ATG--AATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTTATAtat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-G-TTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGCA----ATGG-TTAATCGTATT--ATACTTAAA-TTACACTAGATTAGGCAAGTAATGA
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AAAGTT----GT-ATA-GAGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC----TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCT----T-T------GC-----AAA---AT--------------TCCATT-------T-GACAG---TTTA----A-C--GTAT-ACATT---TTGAAGA-CTTA----AAAGT---AAGT----TCTCTATCTA--TCAACT---ATTTC-TA-------TA----AAC------T-ATtattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTA-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
blockSeqs : G TA T . A . GT . AT T . T C A T T AAT A . CTCG TT . GGT G T . . A C . C . C AG TT A A . C CCT A CG . . . G T G GT . . TT AGTA ATA . G . GG TT A TGTG CATA AT A C A . . TTTATA AG . CAG AG . A CAAG T CTTTACTTCTTTTGCTAATATTATCCATCCAATACAGA CAATCTA C GGT TAATTGACC T TAG C AGAC GCA CAAA TA CT CT . TCAACAGTC ATCAAAC G . . . G A . TAG G GTATCTGTG AT GA A A T TTTG A TTA GTATA A G A A
blockSeqs : A TA A . . . T . A . . . . G . T AT . . G . . . . . . . . . . . . C AA . G G . . . . . . . . . . . T . . . AGTA ATA . G . GG T . . ATA . . A A . . TCTACA . . CA . . A CG G TTTCTCATCCACGAGCTCATCCATAGCTAGTAGAT . . . TGTGACT . . C . . . A T T . TC T G . . . G . . TGC C CTTT TA G A A . . T T ACTTA G G A .
blockSeqs : A A T . . . T . T . . . . G . T T . . A . . . . . . . . . . . . . AG . A G . . . . . . . . . . . . . . . GTC ATA . G . GT T . . AA . . . A . . TCT . . C . . C G T TTTCTTCCATTGCTTAAGGGTACA . . . TGACCAT . . C . . . . . T . TT T C . . . C . . TG G G A T C . . . A T GGGT G A G .
blockSeqs : T . T . . . T . . . . . . G . T T . . G . . . . . . . . . . . . . AG . A G . . . . . . . . . . . . . . . AGT AC . G . GG . . . TA . . . . . . TC . . . . . A . G TTTTCATCCATAGCTGGTAGAT . . . TGACA . . C . . . . . T . TT A . . . . G . . AT T . . T . GTG . . .
blockSeqs : A . A . . . . . . . . . . A . T T . . A . . . . . . . . . . . . . AG . A . . . . . . . . . . . . . . . . CA A . . . G . . . AC . . . . . . C . . . . . . . . TTTCCTCTTTGCAAAATT . . . TAAC . . C . . . . . T . TA T . . . . TG T
blockSeqs : A . T . . . . . . . . . . G . . T . . A . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . TAC . . . . . . . . AG T
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqCons : TA ** *** G* ** ** AGTA ** AA*** TCT**** **** C** A* G*** TGAC******* ** T**** TT*********** T******* *** ** GNTG*
originalCons : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTA--TGACC--GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTC-TA-------TC----AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGCGTAAAGTTACACTGAATAAGGCAGAT-ATGA
finalCons : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GTAA---GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACTTCT----TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GATG---ATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACAG---TTTGAC-------GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAAT----ATTTC-TATT-----------AACT-------ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAGNTG-AAGTTACACTGAATAAGGCAGAT-ATGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 1 111 1111 111 1 11 111 11 11 1111 11 1111 333 1 2222222 1111 222 2222 000000000000000000000000000000000000000000000000000000000 1111111 11 222222222 111 1111 111 1111 22 11 11111 222222222222222 22222222 111 11 444444444444 111 22 1111 111 2222 1
lowQualScore : 3 00 1 5 5 5 77 5 99 5 5 5 5 2 0 3 222 4 4 0000 66 66 222 4 4 4 4 4 4 4 4 4 8 44 66 1 22 5 5 000 5 33 77 5 5 0 5 5 5 33 0 5 5 77 7777 222 5 0 4 5 11 99 55 4444 444 6 99 6 3 7 6 6 7777777 99 4444 555 99 6 99 5555 6 000000000000000000000000000000000000000000000000000000000 8888888 5 33 5 5 0 555555555 5 000 4 2222 000 2222 11 33 11111 999999999999999 33333333 5 444 11 6 2 6 6 9999 1 666666666666 111 00 3 3 0 8 7777 0 1 111 6666 3 3 0
lowQualScore : . .. . . . . .. . .. . . . . . . . ... . . .... .. .. ... . . . . . . . . . . .. .. . .. . . ... . .. .. . . . . . . .. . . . .. .... ... . . . . .. .. .. .... ... . .. . . . . . ....... .. .... ... .. . .. .... . ......................................................... ....... . .. . . . ......... . ... . .... ... .... .. .. ..... ............... ........ . ... .. . . . . .... . ............ ... .. . . . . .... . . ... .... . . .
lowQualScore : 9 33 0 7 7 7 11 7 33 7 0 0 0 2 0 2 222 4 4 4444 11 11 222 4 4 4 4 4 4 4 4 4 9 88 11 2 33 7 7 000 7 66 99 7 7 7 7 7 7 66 7 7 7 99 4444 999 7 1 3 7 44 88 88 2222 000 7 22 7 3 3 7 7 7777777 22 2222 222 22 7 88 0000 7 888888888888888888888888888888888888888888888888888888888 6666666 7 66 7 7 4 777777777 7 000 3 1111 000 1111 44 66 88888 888888888888888 77777777 0 000 00 7 5 7 7 1111 0 555555555555 000 88 0 2 2 0 0000 8 4 888 8888 2 8 0
consensus : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-ATA-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACA--G-TT-TGA-----C---GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTCT--A-------TT---AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAG--TNAAGTTACACTGAATAAGGCAGAT-ATGA
Reference ( family-2185 ) : TATGTGATATAANGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-TAA--CT-AAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACAAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTAACC---AACACTGCAT-G-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGTGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAG-TATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT-A-A-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TCT---TAGT--CAG----CAGC--TC--AG-AGCTTGCA-GAT---GATAGT------TT---TCT----T-T------GC-----TCATCCATAGCCGGT--AGA--TCCATT-------T-GACA--G-TT-TGA-----C---GTAT-ACATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTCT--A-------TT---AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTT-G-TTANATA---G--------AG-A-GA-NGAGAGAAAGAGAGAACA-TGCA----ATGGTTTAATCGTTTT--AAG-NTGAAGTTACACTGAATAAGGCAGAT-ATGA
gi|1 : TAAGTG-TGTAAACTGGT-TATGTTTGAGG-TTTTTAAACTTAAAAATAT--CT-AAAAATAAA-TATTGATAATCTAATTAAATATTTGT-ATA--AGGCGAAACAAA-TCAATTACTTTGAAA--ATAAA-TATCAT---AT-CATA--CTTGACTAACCG--AACACTGCAT-G-TCGCAT-ATTACTA-ATT-GTATAGA-CAGAGTTATCTTTC--TTTAGG-TGAGAGTTGATCTTTT-CTTG---T-TTTA-TATTTCTATTTAAGCATCAGTAGAT-AGAGA-AC-TAG--TTT-GTGGTCAGATATTTTTCACATTGG--TCAG--TATAAGTTATCCTTGGATTTGATTTGATAGTTC-TATAGGTTCGAAAGTT----GT-ATATGAGA--AT-T-G-TTTAGTGAATTCAACATCCATTGTCT---TAGT--CAGTCAACAGT--CC--AGCAGCTTGCATGAT---GATAGT------T------T----T-T------GC-----C--TCTTT-----GC--AAAATTCCATT-------T-GACA--GTTT-TAA-----C---GTAT--CATT---TTGAAGA-CTTA----AATGT---AAGT----TCTCTGTCTA--TCA
gi|11 : agtagtgaattttataaacgatactattaaacagtagactgtggatttcgtagctcgttgttacgtaagttgtttattattgagaggacattctgcgttgatagttcctctagctgttgctttgtaatatttagctgtaatgaaattaacgtttacgttaaaaaggcttactacattgtagttcacatttgcagtgcataattgttgattatctctttgtctgtcttggttattcaaatacattcaggcgaaccattgctatgcttggtaaagtcttttcaacttattacgggaaagcagacgatatgtatttttgatcctgatctcaaatgttgaactactaagatatattaattcagggattgtttgtttatctttagtaacatgggctgattataaatttacattgtataattatagtttacttctttaatccgctcaacgtggtaattcttgtatatcgatagaatgtgtgacgcaatttcttggtttacgatggtgtttaacaacatccgggcttttgttctataaaaaaccgggtacacgtaaccgttgagggtcagaattgaactagaaaccatgaactgacgacaggtaagcacccaggcgtgtctttaataagttaagtaacaatattttataggacgtttagatttatttattatttattatcatctagtgttaaagcattccaataagtgcagtgtccataaatgtggtatatcgttattgtaattttatttgtg-TA-CATCTCGCACATG--T---ACTAACC---AACACTGCAT-G-TT-C-G-ATTACTA-A-T-GTATA-ACCAGAGTTATCTTTC--T
gi|12 : A--TCCATTCAATCTAT-GACAC-G-TTGTGA-----CT--GTATTACATA---TTGAAGACCTTAAGACAAGGTGCAAAGTCAAATCGTA-TCTACTCTAA-CTCAATTTCTTAG-------CTGAAAAC------TAATATCTAGAATTGAATGACAATGAAAGTATGAAGAATGAA-TGGAGTATC-T-TTAAAatgcgctttggacttagttgtagtcctttagaattagcctgaatccacagctcggtaactatactattatcactatactattatcactttgctatatcactatatactattgtaaacgtattttcaagac
gi|13 : ttAA-TAAAGTATTGATATTCCAATTAAATACTTGT-AAAT-AGGTAAAGCAAATTCAA-TACTT-GAAAAATTAAA-TA-CAT---GTACATA--TC--ACTAACC---AACACTGCAT-G-TT-T-T-ATTACTA-A-T-GTATA-ACCAAGGTTATCTCTC--TATAGGATGAGgattatacatgatact
gi|15 : T-G-TGAGATA---G--------AG-A-GA------GAAAGAGAGAATA-TGCA----TTGGTTTATTCGTTTT--AAG--TAAAGTTACACTGAATAAGGCAGAT-ATGAt
gi|16 : A-CGCA----ATAATTAAATAGTTT---AAG--TGAAATTACACTGAATAAGGCAGAt
gi|3 : TGTATGGTA-AATGT--T-TAT-TTT-AG---TTTTAAACT-AAAA-TAA--TT-AAAA-TAA-GTATTTATAATCTAAT-AAATACTTTTTAAAT-CG-CAA-ACTAAT--AA-TACTC----A--TTAAAATA-CAT---ATACATA--TT--ACTAACCGGTAACGGT-CATGG-TT-C-TAATTACTA-A-TCGTATA-A-CA-AG-TATCTTTC--TTAAGGGTTA----TA-TT-TTT-CTTGCCTT-TTT--TA-T--CA-TT-AG-ACCA-TAGAT-GGA-A-AC-TAGT-TTTAGT-GTCAT-TA-TAGTC-TATTGG--TT--CATATACT-TATCCT----TTTTATTGTA-A-GTC--ATAG--C--AAGATTTGTGGT-A-A-CGGA--ATATAGCTTTAGTG-ATTCAA-AT-CACT---C---TAGC--TAG----CATCA-TC--AT-A--TTGC---AT----ATATT------TT---TCTTCCAT-T------GC-----TTA-----AG--GGT--ACA----GATT-------T-GACAGGG-TT-TTA-----C---ATAT-AAATATAGTTGAAGACCTT-----AAATT---AAGT----TCTT--TCTAT-TTAA-T---ATTTCT--A-------TC---AACATCAAAC-ATATCTA-AAT---ATG--AATGTAAGTATG-A-AATTAA-T-GATTTTA-T-TTACATACTTT--------AG-ATTA-GGAGAG-AAGATAGAAAA-TGCATTTGGTGTTTTAGTCGTTTTTAAAG-GGTAAGTTACACT-AATAA-GCAG-T-ATGA
gi|4 : TATGTAATATAAAGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAAA-T----CC-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAAT-AGGCAAGACATATTCAA-TACTTTGAAA--TTAAA-TA-CAT---GTACATA--TT--ACTGACC---AACACTGCAT-A-TT-C-T-ATTACTA-A-T-GTATA-A-CAGAGTTATCTTTC--TTTAGGATGAGAGTTG-TC-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AC-TAG--TTTAGAGGTCAG-TATTTTTC-TATTGG--TCAGTATATAAA-CATCCTTGGATTTTATTGGA-AGGTC-TATAGGTC--AAAGTT----GT---A-GAGA--AT-TAG-TTTAGTGAATTCAA-AT-CACT-TTTATATAGT--CAG----CAA---TC--AG-AGCTTGCA-GATCAAGATA-T------TT---TCT----CATCCACGAGC-----TCATCCATAGCTAGT--AGA--TCTATT-------TCAACA--G-TT-TAATTGACC---ATAT-ACG-A---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTCT--A-------TT---AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTCT-G-TGAGATA---G--------AG-A-GAGAGAGAGAAAAGGAGAACA-TGCA----ATGGTTAAATCGTTTT--AAGTATAAAGTTACACTGAATAAGGCAGAT-ATAAtatttatcctggtataatattgagacatttgatattagatatttctgtctagtatttaatcatgtgtattaattataacacaggttttgggtcgatggttacactttttgaac
gi|5 : TATGTGATA--ATGTG-T-TAT-TTTGAGGGTTTTTAAACTTAAAA-TAA--TTTAAAA-TAAAGTATTGATAATCTAATTAAATACTTGT-AAAT-AGGCAAGACTAATTCAA-TACTTTGAAA--TTAAA-TA-CAT---ATACATATTTT--ACAAGCC---GACACTGCAT-GTTT-C-T-ATTAATA-A-T-GTATA-A-C--AGTTATCTTTCTTTTTAGT-TGAGAGTT--TC-TTT--TTG---TACTTCGTATT--CA--TAAG-ACCAGTAGATGGGAGATAT-GAGGTTTTAGTGGTCAG-TATTTTTC-TATTGGTTTC-GTCT---AG-TATCCTTGGTTTTTATTGGA-AGGTC-TAT-GGTC--AAAGTT----GTCATA-GAGAATAT-TAG-TTT-GTG-ATTCAA-AT-CATT-TCT---TAGTAGCAG----CAGC--TC--AG-AGCTTGCA-GATC--GATAGTCTTTACTT---CTT----T-T------GCTAATATTATCCAT--CCAATACAGA-----ATT-------T-GACA--G-TT-TGA-----CA--GTAT-ATATA---TTGAAGACCTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTCT--ATCAACAGTC---AAC------T-ATATCTAGAGT---ATG--AATGGAAGTATG-AGAATGAA-T-GAGTTTTAG-TTATACA---
gi|6 : ATGTGTGATAATGTG-T-TAT-TTTGAGG-TTTTTAAATTTAAAA-TAAA-CT-AAAA-TAAAGTATTAATATTCCAATCAAATACTTGT-AAAT-AGTTAAGACAAATCCAA-TTCTTTAAAAA-TGAAA-TA-CAT----TACATA--TT--ACTAACC---AACACTGCCT-G-TT-C-T-ATTACTA-A-T-GTATG-A-C----TTA-----------AGGATGAGAGTTG-TG-TTT-CTTG---T-TTT--TATT--CA-TTAAG-ACCATTAGTT-GGAGG-AC-TAG--TTTAGTGGTCAG-TGT-----------------------AAG-TATCCTCAAATCTT---------------TAGGTC--AAAGTT----GT---A-CAGA--AT-GAGATTTAGTTAATTCAA-AT-CACC-TCTACATAGT--CAG----CAG---TC--AG-AGCTTGAC-GAT----ATATT------TT---T----------------------TCATCCATAGCTGGT--AGA--TCCATT-------T-GACA--G-TT-TGA-----CCATATAT-ACATA---TTGAAGACTTTA----AAAGT---AAGT----TCTT--TCTA--TTAA-T---ATTTCT--A-------TT---AAC------A-ATATCGACAGT---ATG--AATGGAAGTGTG-ACAATGAA-T-GAGTTTT-GCTTATAtat
gi|7 : AAGTATG-AGAATGAAAT-GAGTTTA-G-TTATACA---GTATCTGTGAGTA-GA-TGAGCGAAAGAGAGAACATTGCA----ATGG-TTAATCGTATT--ATA-CTTAAATTACACTAGATTAGGCAAGTAATGA
gi|8 : TGTGATA---AGTG-TATAT-TT-GAGG--TTTTAAACTT-AAA-TAAATCT-AAAA-TAAAGTATTGATAATCTAATTAAATATTTGT-AAATCAGGCGAAAGAAATTCAATTACTTTGAAA---TAAA-TA-CAT---ATAT-----TT--ACTAACC---GACACTGCAT-G--T-C-T-ATTACTACA-T-GTATA-A-CAGAGTTATCTTTC--TTTAGG-TGAGAGTT--TC-TTT-TCTG---T-TTT--TATT--CA-TTAAG-ATCAGTAGAT-AGAGA-ACGTAG--TTTAGTGGTCAG-TATTTTAC-TATTGG--TCAGT-TATAAG-TATCCTTGGATTTTATT-GA-AGTTCTTATAGGTCA-AAAGTT----GT-ATA-GAGA--A--TAG-TTTAGTGAATTC-A-AT-CATT-TC----TAGT--CAG----CAACAGTCAGAG-AGCTTGCA-GA----GATAGT------TTTCCTCT----T-T------GC-----AAA---AT--------------TCCATT-------T-GACA--G-TT-TAA-----C---GTAT-ACATT---TTGAAGA-CTTA----AAAGT---AAGT----TCTCTATCTA--TCAACT---ATTTCT--A-------TA---AAC------T-ATtattatcagctttgatgtaagtatttagacaatgttgaattatatatatttatgtctagtatagttaaacatgtaggatttaatttacacagggtttggtatgcgatgttatgcacatggacttgtcgtctaagtgaatcaataagcctgatatcctacagttcggtaaacatattattatagcttatataactatatacatctatacactattggtaaatatatcattttcaagattaaagaagttaatattattttaatcctattcaattggctatttacctgaagtaaaatagggtttaattctattcaagtacaattcagttgtaatgcaagatatatattttcctctaattcatataaattgtaa
gi|9 : gATGTGATA--ATGTG-T-TAT-TTTGAGG-TTTTTAAACTTAAGA-TAAT-CT-TAAA-TAAAGTGTTGATAATCCAATTTAATATTTGT-AAAT-AGGCAAGACAAATTTGA-TACCTTGAAA--TTAAA-TA--AT---GTACATA--TT--GCTAACC---AACACTGCAT-G-TT-C-C-ATTGCTA-A-T-GCAAA-A-TAGAGTTATATTTC--TTTAGGATGAGAGTTG-TT-TTTCCTTG---T-CTT--TATT--CA-TTAAG-ACCAGTAGAT-GGAGA-AG-TAG--TTTA-TTGTCAG-TATTTTTC-TATTGG--TCAGTATAC--G-TATCCTTGAATTTTATTGGA-AGGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GTGAATGTAAAATAAGTGACATTATCTATGTGAATAATGTTAGGCCAATAAAACTGTAAACTCCTAGCTCGTTGATTACGAATGTGTTATTATTAGCAGGAAATTCTGGTCTGATAAGATATTTACAATAACTAAACCATATGCTTTGTAAAATACTATATGAATTAACGTAATATATAATGAATAAGATAATTACTACATAATGTATGTTAGACAATATCTATTAGAAGTGCATAATGTTAAGATTACTATAATAGACTACTGTTCCTTGGATAAAAATATTTTTCAAAATACAATCAAGGAACATAATCAGTCAATGTTTTGTAAAAAGGTCTACATATATTACGGGAAAGCAGACGATGTTAATTGATCCCGATCTCAAAAATGTCATGAAATAATAAAAAAATAATAGAAAATTTCACGGGATTGTTTGATAAAATATCTTTAAGTAACATGATAAATATATTAATATAAACATTGCAAGCTATATTTACTACAATAAAAAACACACACAAACATAAGAGTAATTAAAATGATAATAACAACTACCGATTAAATGTGTGACCAATAAAAATCCTTGCAAGCTTACAACAATGATTGTATTTACTACATCTCCGGGCTTTTGTGCATATAATACACAAAAACGAGCCAGAGATACAAAGTAACCGTTATAGACACGGTAAACCGATATTTCGATTAGATCCAGACTGAAGACAAAAGCGTACCAGCACCCAAAGTTAAAAAGGTGCCTCTATAAGATATTACCCATATAAGAGAAACGTTAGGTTTTCATTATATATTACACT
Unaligned ( gi|10 ): TTATAGAGATATTCTGGTTGCACTTAGTTCACATCTCTCTACTATCTGCTTTTTGTATTCTATCCCATCTTCTGTTATGCTGTTAGTTGAAATTGTATACGTTCTCATTTGAATAGGTTACTACATAAAGTTAGACTATTTATCTGGTGCATAACTGTTGATACCTTGTTATTGACTTGTGTTATTTCTCAAATACCATTTTCAGAATCATGTTCCATGTTGTGTAATAGTCTTTTTTCACTTAGTACGGGA
Unaligned ( gi|14 ): TCTATAACAACTAAATCGCATTAAGCTTTTAAACTGGGAAGTTGATAGCTCCTCGTTTAACACATTATCTTCTAATTGCTAAATTCTTAGCTAGTTTCACATTCATGTAATCATTCAATCATAGATTTTCAATGGA