lowQualScore : 1 111 1 44444444444444444444 11 2222 3333333333333 44444444
lowQualScore : 2 8 3 7 6 7 3 5 1 222 4 1 3 1 00000000000000000000 66 4 6666 5 1 3 00 4 999 1 2 4 2 7777 6 4 4 5 4 77 3 0 7 0 3 88 2222 44 99999 3 1 1 777 4 1111111111111 2 66666666 3 0 8
lowQualScore : . . . . . . . . . ... . . . . .................... .. . .... . . . .. . ... . . . . .... . . . . . .. . . . . . .. .... .. ..... . . . ... . ............. . ........ . . .
lowQualScore : 5 0 8 3 7 3 7 7 4 111 3 4 0 7 66666666666666666666 99 0 9999 0 2 6 00 0 666 1 1 4 9 7777 7 4 4 1 4 22 6 1 3 5 6 55 6666 22 11111 3 1 1 888 4 2222222222222 5 55555555 2 8 0
consensus : TATANATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATGGATATT---AT-AACTA---GTAA--AT--TACG-CGATAT---CTTGAAAANTACTTCA-CCNA-T--NTACTTGAAAATTA-ATAGGGA--TCGTCC-T-CTAAC-AAT-GCCAC-AGAAGTATGCAAAGG-TTGG-TAATC-CT---TAGTGC-AAG-----GGTTTTCTTTAAA-TTGTGTCGACAA---G-TAG--C--GGA----CACACACACCCAC-AACCCACACACGCACATTCGCGATGCTA-TATC
Reference ( gi|3 ) : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---AT-AACTA---GCAA--AT--TACA-CGATAT---CTTGAAAATTATTTCA-CGCA-T--GTACTTGAAAATTA-ATAGGGA--CCGGCC-T-CTAAC-AAT-GCCAC-AGAAGTATGCAAAGG-TTGG-TAATT-CT---AAGTGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---G-TAG--C--GGA----CACACACACCCACCAACCCACACACGCACATTCGCGATGCTA-TATC
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATGGAT------------TA----------T--TACA-CGGCAT---CTTGAAAATTATTTCA-CGCA-T--GTACTTGAAAATTA-ATA-GGA--CCGGCC-T-CTAACAAAT-GCCAC-AGAAGTATGC-AAGG-TTGG-TAATC-CT---TAGTGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---G-TTGTAC--GGACACCCACACACACCCACAAACACACACACGCACATTCGCGATGCTA-TA
gi|7 : TATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG--TATT---AT-AACTA---GCAA--AT--TACA-CGATAT----TTGAAA--TATTTCACCGCATT--GTACTTGAAAATTATATA-GGA--CCGGCCGT-CTAAC-AAT-GCCAC-AGAAGTATGCAAAGG-TT-G-TAATT-CT---AAGTGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---G-TA---C--GGA----CACACACACCC----ACCCACACACGCACATTCGCGATGCTA-
gi|15 : TATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---AT-AACTT---GTAA--AT--TACA-CGATAT---CTTGAAATTTATTTCA-CGCA-T--GTt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---ATCAACTT---GCAA--AT--TGCA-CGACAT---CTTGAAAATTATTTCA-CGCA-T--GTACTTGAAAATTA-ATAGGGA--CCGGCC-T-CTAAC-AAT-GCCAC-AGAAGTATGCAAAGG-TTGG-TAATC-CT---TAGTGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---G-T
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATGGA-ATTCCAAT-ATTTAAATGTAATAAT--GACG-TGATAT---CTTGAAAAATACTTTA-Ctgt
gi|2 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgtttACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACAAATCC--AG-AATT-----TAA--ATGTTACAATGACATAGCTTTAAAAAATACTTTA-TCAA-T--CTACATGCAAATAA-ATAGGGA--TTGTCT-T-CTAAC-AAT-GCCAC-GGAAGTATGCAAAGG-ATGG-TAATC-CT---TAGTGC-AAG-----GGTTCTCTTTCAA-TTcaatc
gi|1 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgAAT-TCCAGT-TTTT-A-----------AATATT---GT----TA---------AT--GATG-CAATAT---CTTAAAACATATTTCA-CTAA-TTAATACTCGAAAATGA-ATAGGT---TTGTCC-T-TGTAT-GAT-ACCAC-AAAA-------------TAG-TAGTT-CT---TAGCGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G-tt
gi|11 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA--AT--GACG-CAATAT---CTTGAAAAATACCTCA-CCAA-T--CTACTTGAA----A-ATAAGGT--TCGTCT-T-CT----------CAT-A-----ATGCAAAGGCTTGG-TAAAC-CT---TAATGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---G-ct
gi|12 : tccagtgtttatatgttat-CGATAT---ATTGAGAATAAATCCA-CCGA-T--CTA-TTGAAAATTA-ATAGGGA--TGGTTC-T-CTTAC-AA--AAAAG-AAAAAAATGCAAAGG-TATG-TGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgtatgatg-CGATAT---ATTGAGAATAAATCCA-CCGA-T--CTA-TTGAAAATTA-ATAGGGA--TGGTTC-T-CTTAC-AA--AAAAG-AAAAAAATGCAAAGG-TATG-TGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|5 : tatgatgATAG---CTTTAAAAATACTTTA-TCAA-T--CTACATGCAAATAA-ATAGGGAATTTGTCC-TTCTAAC-AATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCT---TAGTGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---GATGG--C-----------------CCAACCA--CCACACA-GCATA---GCGATGCTATTATC
gi|10 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaatttaaatgtacaatgaacAT-GCCAC-AGAAGTATGCAAAGG-TTGG-TAATC-CT---TAGTGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTG-TAA--C--AGA----Ctcctctgtaactta
gi|14 : CCAC-AGGGGTATACAAAGT-TTGG-TAATC-CC---TAGTTT---------TGTTTTGTTTTTA-TTTTGTCCAC--------AG--CCTGTA----CAGACACACC----------CACATGCACATTCACATTGCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|17 : atttaggagccgacactTTTTCTCTAAA-TTGTGTTGACAA---G-Tc
gi|10 : ACGCACATTTGCGATTCTA-TATCtgta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT
Alignments
lowQualScore : 1 1 1 33333333333333 111 1111111111111 333333
lowQualScore : 1 6 1 5 5 5 1 5 0 5 0 2 0 1 0 11111111111111 55 666 3 555 2 2 44 3 666 1 4 1 55 0 8 3 4 55 3 6 3 3 111 3 88888 3 777 0 4444444444444 777777 1 6
lowQualScore : . . . . . . . . . . . . . . . .............. .. ... . ... . . .. . ... . . . .. . . . . .. . . . . ... . ..... . ... . ............. ...... . .
lowQualScore : 0 7 7 0 7 0 7 0 0 9 0 5 0 4 4 88888888888888 00 999 6 888 2 2 33 3 000 0 0 6 55 6 0 7 0 77 3 7 3 3 777 3 33333 1 000 1 8888888888888 666666 0 7
consensus : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATGGATATT---AT-AACT----GTAA--AT--TACG-CGATAT---CTTGAAAANTATTTCACC-NA-TN--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
Reference ( family-2121 ) : TATANATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATGGATATT---AT-AACTA---GTAA--AT--TACG-CGATAT---CTTGAAAANTACTTCACC-NA-TN--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTTTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
gi|1 : AAT-TCCAGT-TTTT-A-----------AATATT--------------GTTA--AT--GATG-CAATAT---CTTAAAACATATTTCACT-AA-TTAATACTCGAAAATGA-ATAGGT---TTGTCC-TTGTAT-GA-TACCA-CAAAA-------------T-AGTAGTT-CTTAG---CGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G
gi|10 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTGTAA--C--AGA----Cct
gi|10 : ACGCACATTTGCGATTCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|11 : atgccacagaagtatgcaaaggttggtaatccttagtgcaaggcctaggttttctctaaattgtgttgacaagttgtaacagacccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaA--AT--GACG-CAATAT---CTTGAAAAATACCTCACC-AA-TC--TACTTGAA----A-ATAAGGT--TCGTCT-TCT----------CA-TA-----ATGCAAAGGCTT-GGTAAAC-CTTAA---TGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---Gcc
gi|12 : tccagtgtttatatgttat--AT--GATG-CGATAT---ATTGAGAATAAATCCACC-GA-TC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTAC-AA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgt--AT--GATG-CGATAT---ATTGAGAATAAATCCACC-GA-TC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTAC-AA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|14 : tCCA-CAGGGGTATACAAAGT-TT-GGTAATC-CCTAG---TTT---------TGTTTTGTTTTTA-TTTTGTCCAC-------AG--CCTGTA----CAGACACACC-----------CACATGCACATTCACATTGCTA-TATC
gi|15 : atttaggagccgacactTATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---AT-AACTT---GTAA--AT--TACA-CGATAT---CTTGAAATTTATTTCACG-CA-TG--Tc
gi|17 : TTTTCTCTAAA-TTGTGTTGACAA---GT
gi|2 : ACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACAAATCC--AG-AATT-----TAA--ATGTTACAATGACATAGCTTTAAAAAATACTTTATC-AA-TC--TACATGCAAATAA-ATAGGGA--TTGTCT-TCTAAC-AA-TGCCA-CGGAAGTATGCAAAGG-AT-GGTAATC-CTTAG---TGC-AAG-----GGTTCTCTTTCAA-TTtgta
gi|3 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgTATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---AT-AACTA---GCAA--AT--TACA-CGATAT---CTTGAAAATTATTTCACG-CA-TG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATT-CTAAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTAG--C--GGA----CACACACACCCACC-AACCCACACACGCACATTCGCGATGCTA-TATCtt
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATGGA-ATTCCAAT-ATTTAAATGTAATAAT--GACG-TGATAT---CTTGAAAAATACTTTACC-AA-T
gi|5 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgtttATAG---CTTTAAAAATACTTTATC-AA-TC--TACATGCAAATAA-ATAGGGAATTTGTCCTTCTAAC-AATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCTTAG---TGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---G--A--T--GG---------CCCAACCA------CCACACA-GCATA---GCGATGCTATTATCc
gi|7 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaatttaaatgtacaatgaacTATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG--TATT---AT-AACTA---GCAA--AT--TACA-CGATAT----TTGAAA--TATTTCACCGCATTG--TACTTGAAAATTATATA-GGA--CCGGCCGTCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT--GTAATT-CTAAG---TGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---GTA---C--GGA----CACACACACCC-----ACCCACACACGCACATTCGCGATGCTA-tcctctgtaactta
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATGGAT------------------TA----T--TACA-CGGCAT---CTTGAAAATTATTTCACG-CA-TG--TACTTGAAAATTA-ATA-GGA--CCGGCC-TCTAACAAA-TGCCA-CAGAAGTATGC-AAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTTGTAC--GGACACCCACACACACCCA-CAAACACACACACGCACATTCGCGATGCTA-TAt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATGGATATT---ATCAACTT---GCAA--AT--TGCA-CGACAT---CTTGAAAATTATTTCACG-CA-TG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT
Alignments
lowQualScore : 1 1 1 1111111 2222222222 111 1111111111111 333333
lowQualScore : 6 1 5 5 5 1 5 0 5 0 2 0 1 6666666 6666666666 4 8888 777 3 555 2 0 44 999 1 4 55 0 8 3 4 55 3 6 3 3 111 3 88888 3 777 0 4444444444444 777777 1 6
lowQualScore : . . . . . . . . . . . . . ....... .......... . .... ... . ... . . .. ... . . .. . . . . .. . . . . ... . ..... . ... . ............. ...... . .
lowQualScore : 7 7 0 7 0 7 0 0 9 0 5 0 4 2222222 7777777777 0 5555 666 3 888 2 3 33 666 0 0 55 6 0 7 0 77 3 7 3 3 777 3 33333 1 000 1 8888888888888 666666 0 7
consensus : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATGGA-------TATT-AT-AAC-T-GT-A-A--AT--NACG-CGATAT---CTTGAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
Reference ( family-2121 ) : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATGGA-------TATT-AT-AAC-T-GT-A-A--AT--TACG-CGATAT---CTTGAAAANTATTTCACCN-ATN--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
gi|1 : AAT-TCCAGT-TTTT-A-----------AA-------TATT----------GT-T-A--AT--GATG-CAATAT---CTTAAAACATATTTCACTA-ATTAATACTCGAAAATGA-ATAGGT---TTGTCC-TTGTAT-GA-TACCA-CAAAA-------------T-AGTAGTT-CTTAG---CGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G
gi|10 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTGTAA--C--AGA----Cct
gi|10 : ACGCACATTTGCGATTCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|11 : atgccacagaagtatgcaaaggttggtaatccttagtgcaaggcctaggttttctctaaattgtgttgacaagttgtaacagacccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT-AT-A---T-GTTATA--AT--GACG-CAATAT---CTTGAAAAATACCTCACCA-ATC--TACTTGAA----A-ATAAGGT--TCGTCT-TCT----------CA-TA-----ATGCAAAGGCTT-GGTAAAC-CTTAA---TGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---Gcc
gi|12 : tccagtgt--AT--GATG-CGATAT---ATTGAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTAC-AA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgt--AT--GATG-CGATAT---ATTGAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTAC-AA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|14 : tCCA-CAGGGGTATACAAAGT-TT-GGTAATC-CCTAG---TTT---------TGTTTTGTTTTTA-TTTTGTCCAC-------AG--CCTGTA----CAGACACACC-----------CACATGCACATTCACATTGCTA-TATC
gi|15 : atttaggagccgacactTATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGA-------TATT-AT-AACTT-GT-A-A--AT--TACA-CGATAT---CTTGAAATTTATTTCACGC-ATG--Tc
gi|17 : TTTTCTCTAAA-TTGTGTTGACAA---GT
gi|2 : ACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACA-------AATCCAG-AAT-T--T-A-A--ATGTTACAATGACATAGCTTTAAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGA--TTGTCT-TCTAAC-AA-TGCCA-CGGAAGTATGCAAAGG-AT-GGTAATC-CTTAG---TGC-AAG-----GGTTCTCTTTCAA-TTtgta
gi|3 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgTATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATGGA-------TATT-AT-AAC-TAGC-A-A--AT--TACA-CGATAT---CTTGAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATT-CTAAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTAG--C--GGA----CACACACACCCACC-AACCCACACACGCACATTCGCGATGCTA-TATCtt
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATGGAATTCCAATATT--T-AAA-T-GT-A-ATAAT--GACG-TGATAT---CTTGAAAAATACTTTACCA-AT
gi|5 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgtttATT--T-AAA-T-GT-ACA--AT--GA-A-C-ATAG---CTTTAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGAATTTGTCCTTCTAAC-AATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCTTAG---TGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---G--A--T--GG---------CCCAACCA------CCACACA-GCATA---GCGATGCTATTATCc
gi|7 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaTATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG---------TATT-AT-AAC-TAGC-A-A--AT--TACA-CGATAT----TTGAAA--TATTTCACCGCATTG-TACTTGAAAATTATATAGG-A--CCGGCCGTCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT--GTAATT-CTAAG---TGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---GTA---C--GGA----CACACACACCC-----ACCCACACACGCACATTCGCGATGCTA-tcctctgtaactta
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATGGA-------T--------------T-A-----T--TACA-CGGCAT---CTTGAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATA-GGA--CCGGCC-TCTAACAAA-TGCCA-CAGAAGTATGC-AAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTTGTAC--GGACACCCACACACACCCA-CAAACACACACACGCACATTCGCGATGCTA-TAt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATGGA-------TATT-ATCAAC-TTGC-A-A--AT--TGCA-CGACAT---CTTGAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAAC-AA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT
Alignments
lowQualScore : 1 1 1 3333333333333333333333333333333333333 111 1111111111111 333333
lowQualScore : 6 1 5 5 5 1 5 0 5 0 2 0 0000000000000000000000000000000000000 1 2 3 2 0 77 88 1 4 6666 0 8 3 99 3 6 3 3 111 3 88888 3 777 0 4444444444444 777777 1 6
lowQualScore : . . . . . . . . . . . . ..................................... . . . . . .. .. . . .... . . . .. . . . . ... . ..... . ... . ............. ...... . .
lowQualScore : 7 7 0 7 0 7 0 0 9 0 5 0 9999999999999999999999999999999999999 0 2 3 2 3 77 66 0 0 5555 6 0 7 44 3 7 3 3 777 3 33333 1 000 1 8888888888888 666666 0 7
consensus : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-T-GT-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
Reference ( family-2121 ) : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-T-GT-A-A--ATNACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
gi|1 : AAT-TCCAGT-TTTT-A-------------AA-------T-----ATT---------GT-T-A--ATGATGCAATATCTT-AAAACATATTTCACTA-ATTAATACTCGAAAATGA-ATAGGT---TTGTCC-TTGTATGA-TACCA-CAAAA-------------T-AGTAGTT-CTTAG---CGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G
gi|10 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTGTAA--C--AGA----Cct
gi|10 : ACGCACATTTGCGATTCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|11 : atgccacagaagtatgcaaaggttggtaatccttagtgcaaggcctaggttttctctaaattgtgttgacaagttgtaacagacccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTAT-A---T-GTTATA--ATGACGCAATATCTT-GAAAAATACCTCACCA-ATC--TACTTGAA----A-ATAAGGT--TCGTCT-TCT---------CA-TA-----ATGCAAAGGCTT-GGTAAAC-CTTAA---TGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---Gcc
gi|12 : tccagtgt--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgt--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|14 : tCCA-CAGGGGTATACAAAGT-TT-GGTAATC-CCTAG---TTT---------TGTTTTGTTTTTA-TTTTGTCCAC-------AG--CCTGTA----CAGACACACC-----------CACATGCACATTCACATTGCTA-TATC
gi|15 : atttaggagccgacactTATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AACTT-GT-A-A--ATTACACGATATCTT-GAAATTTATTTCACc
gi|17 : TTTTCTCTAAA-TTGTGTTGACAA---GTgcatgt
gi|2 : ACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACAAA-------TCCAGAATT-T-AAA-T-GTTACA--ATGAC---ATAGCTTTAAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGA--TTGTCT-TCTAACAA-TGCCA-CGGAAGTATGCAAAGG-AT-GGTAATC-CTTAG---TGC-AAG-----GGTTCTCTTTCAA-TTtgta
gi|3 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgTATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-TAGC-A-A--ATTACACGATATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATT-CTAAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTAG--C--GGA----CACACACACCCACC-AACCCACACACGCACATTCGCGATGCTA-TATCtt
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATG--GAATTCCAAT-----ATT-T-AAA-T-GT-A-ATAATGACGTGATATCTT-GAAAAATACTTTACCA-ATC--
gi|5 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgttt-----ATT-T-AAA-T-GT-ACA--ATGA-AC-ATAGCTT-TAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGAATTTGTCCTTCTAACAATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCTTAG---TGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---G--A--T--GG---------CCCAACCA------CCACACA-GCATA---GCGATGCTATTATC
gi|7 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaTATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG-----------T-----ATTAT-AAC-TAGC-A-A--ATTACACGATAT-TT-GAAA--TATTTCACCGCATTG-TACTTGAAAATTATATAGG-A--CCGGCCGTCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT--GTAATT-CTAAG---TGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---GTA---C--GGA----CACACACACCC-----ACCCACACACGCACATTCGCGATGCTA-tcctctgtaactta
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATG--GA-------T------------------T-A-----TTACACGGCATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGG-A--CCGGCC-TCTAACAAATGCCA-CAGAAGTATGCAA-GG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTTGTAC--GGACACCCACACACACCCA-CAAACACACACACGCACATTCGCGATGCTA-TAt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTATCAAC-TTGC-A-A--ATTGCACGACATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT
Alignments
lowQualScore : 1 1 1 22222222222222222 33333333333333 111 1111111111111 333333
lowQualScore : 6 1 5 5 5 1 5 0 5 0 2 0 33333333333333333 22222222222222 44 0 2 3 2 0 77 88 1 4 6666 0 8 3 99 3 6 3 3 111 3 88888 3 777 0 4444444444444 777777 1 6
lowQualScore : . . . . . . . . . . . . ................. .............. .. . . . . . .. .. . . .... . . . .. . . . . ... . ..... . ... . ............. ...... . .
lowQualScore : 7 7 0 7 0 7 0 0 9 0 5 0 99999999999999999 66666666666666 66 4 2 3 2 3 77 66 0 0 5555 6 0 7 44 3 7 3 3 777 3 33333 1 000 1 8888888888888 666666 0 7
consensus : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-T-GT-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
Reference ( family-2121 ) : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-T-GT-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
gi|1 : AAT-TCCAGT-TTTT-A-------------AA-------T-----ATT---------GT-T-A--ATGATGCAATATCTT-AAAACATATTTCACTA-ATTAATACTCGAAAATGA-ATAGGT---TTGTCC-TTGTATGA-TACCA-CAAAA-------------T-AGTAGTT-CTTAG---CGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G
gi|10 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTGTAA--C--AGA----Cct
gi|10 : ACGCACATTTGCGATTCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|11 : atgccacagaagtatgcaaaggttggtaatccttagtgcaaggcctaggttttctctaaattgtgttgacaagttgtaacagacccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTAT-A---T-GTTATA--ATGACGCAATATCTT-GAAAAATACCTCACCA-ATC--TACTTGAA----A-ATAAGGT--TCGTCT-TCT---------CA-TA-----ATGCAAAGGCTT-GGTAAAC-CTTAA---TGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---Gcc
gi|12 : tccagtgt--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgt--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|14 : tCCA-CAGGGGTATACAAAGT-TT-GGTAATC-CCTAG---TTT---------TGTTTTGTTTTTA-TTTTGTCCAC-------AG--CCTGTA----CAGACACACC-----------CACATGCACATTCACATTGCTA-TATC
gi|15 : atttaggagccgacactTATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AACTT-GT-A-A--ATTACACGATATCTT-GAAATTTATTTCACc
gi|17 : TTTTCTCTAAA-TTGTGTTGACAA---GTgcatgt
gi|2 : ACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACAAA-------TCCAGAATT-T-AAA-T-GTTACA--ATGAC---ATAGCTTTAAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGA--TTGTCT-TCTAACAA-TGCCA-CGGAAGTATGCAAAGG-AT-GGTAATC-CTTAG---TGC-AAG-----GGTTCTCTTTCAA-TTtgta
gi|3 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgTATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-TAGC-A-A--ATTACACGATATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATT-CTAAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTAG--C--GGA----CACACACACCCACC-AACCCACACACGCACATTCGCGATGCTA-TATCtt
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATG--GAATTCCAAT-----ATT-T-AAA-T-GT-A-ATAATGACGTGATATCTT-GAAAAATACTTTACCA-ATC--
gi|5 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgttt-----ATT-T-AAA-T-GT-ACA--ATGA-AC-ATAGCTT-TAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGAATTTGTCCTTCTAACAATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCTTAG---TGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---G--A--T--GG---------CCCAACCA------CCACACA-GCATA---GCGATGCTATTATC
gi|7 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaTATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG-----------T-----ATTAT-AAC-TAGC-A-A--ATTACACGATAT-TT-GAAA--TATTTCACCGCATTG-TACTTGAAAATTATATAGG-A--CCGGCCGTCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT--GTAATT-CTAAG---TGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---GTA---C--GGA----CACACACACCC-----ACCCACACACGCACATTCGCGATGCTA-tcctctgtaactta
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATG--GA-------TT----ATTA--------------------CACGGCATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGG-A--CCGGCC-TCTAACAAATGCCA-CAGAAGTATGCAA-GG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTTGTAC--GGACACCCACACACACCCA-CAAACACACACACGCACATTCGCGATGCTA-TAt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTATCAAC-TTGC-A-A--ATTGCACGACATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GT
blockSeqs : T A T C A A C A A C C T CAAATCCAGA ATCAACTTGCA TA G T A GC G T T GAAT T T TT C C G G AAA A GCCTA T GTT GTACGGACACC ACCAA T T
blockSeqs : . G T . A G . A G C A T GAATTCCAAT ATAACTTGTA . G . T A . T . GT G T AT . A . . AAA . . . . GCCTGTA ACAAA C .
blockSeqs : . A T . A G . . A . C . GATT TAAATGTTAC . G . T G . A . GA . A T . . . . . . . . . GCGGA A C .
blockSeqs : . A T . A G . . G . A . GAT ATAACTAGCA . A . T G . T . GA . A T . . . . . . . . . ATGG A C .
blockSeqs : . . . . . A . . T . C . GAT ATAACTAGCA . A . A A . A . GA . A T . . . . . . . . . CGGA . .
blockSeqs : . . . . . . A . C . GAT ATATGTTAT . G . T C . T . GA . A T . . . . . . . . .
blockSeqs : . . . . C . T TAAATGTAC . A . A A . T . GA . A T . . . . . . . . .
blockSeqs : TAAATGTA . A . A A . T . A . A . . . . . . . . . .
blockSeqs : A . A . T C . . . A . . . . . . . . . . . .
blockSeqs : . A . T C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ATAANTGCA***** ** GA** GCGGA******** A*****
originalCons : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AAC-T-GT-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCCA-C-AACCCACACACGCACATTCGCGATGCTA-TATC
finalCons : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTATAANTGCA-----A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAGCGGA--------CACACACACCCA-----CCCACACACGCACATTCGCGATGCTA-TATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT
Alignments
lowQualScore : 1 1 1 22222222222222222 33333333333333 111 1111111111111 33333333333
lowQualScore : 6 1 5 5 5 1 5 0 5 0 2 0 33333333333333333 00000000000000 44 0 2 3 2 0 77 88 1 4 6666 0 8 3 99 3 6 3 3 111 3 88888 3 777 0 4444444444444 44444444444 1 6
lowQualScore : . . . . . . . . . . . . ................. .............. .. . . . . . .. .. . . .... . . . .. . . . . ... . ..... . ... . ............. ........... . .
lowQualScore : 7 7 0 7 0 7 0 0 9 0 5 0 99999999999999999 77777777777777 66 4 2 3 2 3 77 66 0 0 5555 6 0 7 44 3 7 3 3 777 3 33333 1 000 1 8888888888888 88888888888 0 7
consensus : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AA-NT-GC-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCC----AC---C-CACACACGCACATTCGCGATGCTA-TATC
Reference ( family-2121 ) : TATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTNT-ACCCTG-ACATG--GA-------T-----ATTAT-AA-NT-GC-A-A--ATGACGCGATATCTT-GAAAANTATTTCACCG-ATC--TACTTGAAAATTA-ATAGGGA--TCGTCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTCGACAA---GTAG--C--GGA----CACACACACCC----AC---C-CACACACGCACATTCGCGATGCTA-TATC
gi|1 : AAT-TCCAGT-TTTT-A-------------AA-------T-----ATTGT-----T------A--ATGATGCAATATCTT-AAAACATATTTCACTA-ATTAATACTCGAAAATGA-ATAGGT---TTGTCC-TTGTATGA-TACCA-CAAAA-------------T-AGTAGTT-CTTAG---CGC-AAG-----TGTTTTCTTTAAA-CTTTGTCTACAA---G
gi|10 : tcgttgtgagtgacactagatacattgtataccaacgcatacacagtctcatgatttgtgcacgtcaactaacgtttaatattatggtaacaatgttagctcacgaacttacctgaagatacatgtatgatgtcaaatcgataaccaaagtgcatgctggccttacttcacgtttctaatttgactcactttaaccagaagtttacattgtcaactcgtacataaA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAGGCCTAGGTTTTCTCTAAA-TTGTGTTGACAAGTTGTAA--C--AGA----Cct
gi|10 : ACGCACATTTGCGATTCTA-TATCccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacatttgcgattctatatccc
gi|11 : atgccacagaagtatgcaaaggttggtaatccttagtgcaaggcctaggttttctctaaattgtgttgacaagttgtaacagacccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna-A--ATGACGCAATATCTT-GAAAAATACCTCACCA-ATC--TACTTGAA----A-ATAAGGT--TCGTCT-TCT---------CA-TA-----ATGCAAAGGCTT-GGTAAAC-CTTAA---TGC-AAG-----GGTTCTCTTTAGA-TTTAGTCCACAA---Gcc
gi|12 : tccagtgtttatatgttat--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-TTctg
gi|13 : ttgt--ATGATGCGATATATT-GAGAATAAATCCACCG-ATC--TA-TTGAAAATTA-ATAGGGA--TGGTTC-TCTTACAA--AAAA-GAAAAAAATGCAAAGG-TA-TGTGATG-CTTAGAAATG---AA-----GGTTATTTTTAAA-Ttccaccacaagc
gi|14 : tCCA-CAGGGGTATACAAAGT-TT-GGTAATC-CCTAG---TTT---------TGTTTTGTTTTTA-TTTTGTCCAC-------AG--CCTGTA----CAGACACACC--------------CACATGCACATTCACATTGCTA-TATC
gi|15 : atttaggagccgacactTATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AACTT-GT-A-A--ATTACACGATATCTT-GAAATTTATTTCACc
gi|17 : TTTTCTCTAAA-TTGTGTTGACAA---GTgcatgt
gi|2 : ACTTTCAC-TTTAA---CCCAAAGTCTCTAGTATTGTCAACTTGTACATACAAA-------TCCAGAATT-T-AA-AT-GTTACA--ATGAC---ATAGCTTTAAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGA--TTGTCT-TCTAACAA-TGCCA-CGGAAGTATGCAAAGG-AT-GGTAATC-CTTAG---TGC-AAG-----GGTTCTCTTTCAA-TTtgta
gi|3 : acgtgacagtgttcgtttaaaaatcatcaaagcttgctggctcttcacaccaaataattttcaattcaaacagaaagtctcaagcacaaagttcttgctcactaacttacctgaagttttgaagtcaaaattcgtgcacattgtttaactccaatttgTATAGATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGGAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTAT-AA-CTAGC-A-A--ATTACACGATATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATT-CTAAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTAG--C--GGA----CACACACACCCACCAAC---C-CACACACGCACATTCGCGATGCTA-TATCtt
gi|4 : TTAAGTCTGATTTTAGTTTTAC-TTTAA----CCGGAAG-TCT-GTATTGTCAACTTGTACATG--GAATTCCAAT-----ATT-T-AA-AT-GT-A-ATAATGACGTGATATCTT-GAAAAATACTTTACCA-ATC--
gi|5 : cacaagtgtttgtcaaattatcaaagctcgttgatgattgacaccaagtgattttcaattcaaacagaatgttcacgttagtgttcaatgatgtggcaacatacaaacacaaagttatcacacgaattttgaagtcgaaattcgtgcacgttt-----ATT-T-AA-AT-GT-ACA--ATGA-AC-ATAGCTT-TAAAAATACTTTATCA-ATC--TACATGCAAATAA-ATAGGGAATTTGTCCTTCTAACAATTGCCACCGGAAGTATGCAAAGGATTGGGTAATCGCTTAG---TGC-AAG-----GGTTCTCTTT-AA-TTTTGCCCACAA---G--A--T--GG---------CCCAACC----A----C-CACACA-GCATA---GCGATGCTATTATC
gi|7 : tccaatttgacttcactttaaccaaagtctctagtattgtcaatttgtacataccaaatccaaTATAGAGTAAG-CT--GCTTACTT-CGCCTTTAAATACCCG-AAT-CCAAGT-TATT-ACCCTG-ACATG-----------T-----ATTAT-AA-CTAGC-A-A--ATTACACGATAT-TT-GAAA--TATTTCACCGCATTG-TACTTGAAAATTATATAGG-A--CCGGCCGTCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT--GTAATT-CTAAG---TGCAAAG-----GGTTTTCTCTAAATTTGTGTTGACAA---GTA---C--GGA----CACACACACCC----AC---C-CACACACGCACATTCGCGATGCTA-tcctctgtaactta
gi|8 : TATAGATTAAG-CTAGGCTTACTT-CGC-TTTAAATACCCGGAAT-TCCAGT-TT-T-ACCCTG-ACATG--GA-------TT----ATTA--------------------CACGGCATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGG-A--CCGGCC-TCTAACAAATGCCA-CAGAAGTATGCAA-GG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GTTGTAC--GGACACCCACACACACCC----ACAAACACACACACGCACATTCGCGATGCTA-TAt
gi|9 : ATACATTAAG-CTAGGCTTACTTTCGC-TTTAAATACCCGAAAT-TCCAGT-TTAT-ACCCTG-ACATG--GA-------T-----ATTATCAA-CTTGC-A-A--ATTGCACGACATCTT-GAAAATTATTTCACGC-ATG--TACTTGAAAATTA-ATAGGGA--CCGGCC-TCTAACAA-TGCCA-CAGAAGTATGCAAAGG-TT-GGTAATC-CTTAG---TGC-AAG-----GGTTTTCTCTAAA-TTGTGTTGACAA---GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AGTGTTCGCTTTAAAAATCATCAAAGCTTGCTGGCTTTCTTCACACCAAATAATTTTCAATTCAAACAGAAAGTCTCAAGCACAAAGTTTTCTTGCTCAACTTAACTTAACCTGAAGTTTTGAAGTCAAAATTCGTGCACATTTGTTTAACTCCAATTTGACTTCACTTTAACCAAAGTCTCTAGTATTGTCAATTTGTACATACCAAATCCAAATTTAAATGTACAATGAACATAGCTTTAAAAATACTTTATCAATCT
Unaligned ( gi|16 ): TACTCAAAGCCTGCTGTCGAATGAAACTTAATTCATACAGAACTTCTCAAGATATGTTCAATAATATGGCAACATACAAACAATGTTACCTCAAGAACTT