lowQualScore : 11111111111111 1111111111111111111111111111111
lowQualScore : 11 111 1111 1 1111 1 11 1 1 111 222222 2 11111111111111 1 777777777777777777 11 1 1 2222 33333 1 11 1111 11 66666666666666666 3333 111111 1111 2 22222 444444444444444444444 1 555555555555555555555555 111 22222 1 111 11 222222222222 11111 11 111111111 2 11 11 0000000000000000000000000000000 1 5555 22
lowQualScore : 9 2 00 666 2 1111 4 0 8888 0 6 55 3 33 0 2 999 999999 7 2 3 0 77777777777777 0 333333333333333333 55 0 2 6 0 1111 11111 9 2 2 0 88 5555 6 9 1 8 11 22222222222222222 6 7 3333 777777 1111 0 5 5 44444 5 77 555555555555555555555 1 5 4 5 8 888888888888888888888888 222 5 4 77777 6 6 6 3 000 5 11 999999999999 33333 6 3 6 6 1 99 1 0 55 99 4 77 3 222222222 0 8 5 6 3 1 0 11 5 11 1111111111111111111111111111111 3 0 7777 6 22 0
lowQualScore : . . .. ... . .... . . .... . . .. . .. . . ... ...... . . . . .............. . .................. .. . . . . .... ..... . . . . .. .... . . . . .. ................. . . .... ...... .... . . . ..... . .. ..................... . . . . . ........................ ... . . ..... . . . . ... . .. ............ ..... . . . . . .. . . .. .. . .. . ......... . . . . . . . .. . .. ............................... . . .... . .. .
lowQualScore : 8 5 22 222 5 5555 0 0 8888 0 5 88 2 88 0 0 777 777777 3 5 0 0 55555555555555 0 888888888888888888 22 8 5 2 0 2222 55555 2 5 5 0 00 5555 5 2 4 0 66 22222222222222222 7 8 7777 888888 5555 0 7 7 99999 0 99 999999999999999999999 3 7 3 7 0 888888888888888888888888 999 7 3 55555 7 7 7 3 000 7 00 333333333333 11111 7 5 7 7 0 22 0 7 77 55 7 77 2 000000000 8 0 0 7 5 7 4 00 0 00 7777777777777777777777777777777 3 7 2222 7 22 7
consensus : TTTACAACAAACAGCAACATCCANTTTAGGAAGAAATGTCTTT-CA-GAAGGTTTNAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATCGC-GT--CTGTTAACACTAACATANATGATTCCGCTTGTTTTAAAAACAATCATCATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCAAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTC-TGTCTCAGCAAGG-CTAAAGAGGA-ATATTCTTTAAACTCTTCAA-AATTCGAGGAATGT-GGAC-AA-A-T-TTNAAAGCT--TTTT----------------T--CANAATCAT-AAACCC-TTTGATAGAAAGGGAAA-------AA------AAAATC--NTTTA-CCAACATCTACAT-TAC-ATC-AGATAAAA-TCTTGTCGAACCGG-TTT-CCA---CCTTT-A--CA------------AACG-G---ATGCTAAG-CAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGTC-NATC-TNTAA-CGTTGTTTCCGC-AT-AC-C-CTGAACAAAAGC-TCAAATCTA-TCATTATGAAAGCTCCCAGTAAATCATTGTGAAA--TCGACCC--TATTCCCACGTCTTCTTNTCGGGAAGTAT---AT----------AG-AACCGTTGCTTCC----C-TTAATC-ACCAGAATAGTCAACT
Reference ( gi|3 ) : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCTAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACTTGCTC-TGTCTCAGCAAGG-CTAAAGAGGAGATATTCTTTAAACTCTTTAA-AATT-GAGGAATGT-GGAC-AA-G-T-TTTAAAGCT--TTCT----------------T--CATAATCAT-AAACCC-TTTGTTAGAAAGGGGAA-------AA------AAAATC--ATTTA-CCAACATCTACATGTAC-ATC-AGATAAAA-TCTTGTCGAACCGG-TTT-CCA---CCTTT-A--CA------------AACA-A---ATGCTAAG-TAAAACTACCT-G-GATGCAGATTTACCC--TATAATGGCC-TATT-TTTAA-TGTTGTTTCCGC-AT-AC-C-CTGAACAAAAGC-TCACGTCTA-TCATTATGAAAGCTCCCAGTAAATCATTGTGAAA--TTGAGCC--TATTCCCACGTCTCTTTGTTAGAAAGGGG---A-----------AG-AACCGTTGCTTCCATTAC-TTAATA-ACCAGGATAGTCAACT
gi|2 : TTTACAACAAACAG-AACATCCATTTTAGGAAGAAATATCTTTTCATGAAGGTTTTATTATTA---TCCAACCAGG-T-AAATG--AAGA-GATATCCATGAGCTATTTTAAATTGCTGCTCCTGTTAACACTAACATAAATGATTCCGCTTGTT--------------CATCAGACCAAGACG------------------ATCTGAGCTAGGGCTGC-AAACAA-CAA----ACATGGAA--AAAGTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAG-TATTTAAAACAGCATGAAATAAATCTTAGAC-ACTTGCTCTTGTCTCAGCAAGGCCTAAAGAGAGAATATTCTTTAAACTCTTT-A-AATT-GAGGAATGTGGGAC-AA-T-TGTTTAAAGCTTCTTCT----------------T--CATAATCATAAAACCC-TTTGTTAGAAAGGGAAA-------AA------AATATC--ATTTA-CCAA-ATCTACATGTAC-ATCAAGATAAAAGTCTTGTCGAACCGG-TTT-CCA---CCTTT-A--CA------------AACA-A---ATGCTAAG-TAAAACTACCTCG-GATGCAGATTTACCC--TATAATGCCCTTATTCTTTAATTGTTGTTTCCGCAAT-AC-C-CTGAACAAAAGCGTCACGTCTATTCATTATGAAAGCTCCCAGTAAATCATTGTGAAA--TTGAGCC--TATTCCCACGTCTTCTTGTCGGGAAATAT---AT----------AGCAACCGTTGCTTCCAATACTTTAATAGACCAGGATAGTCAACT
gi|1 : aaccgtttctctgcgatgtattttgatcactatgcagaaaaaggctTTTACAACAAACAGCAACACCAAA---AGAAAGAAATGTTTTT-TA-AAATGTTTAAT-ATTT---TC-AATCAGGATGAGATGGAAGGA-TATATTCATGAGCTAT------GCGC-AT--CTGTTAGCACTAA-ATAaccctaatgtgattataaggagtcacttataaaatctggtcttggcaaagag
gi|9 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcaTTTACTACCATAAGCAACA--CAGAGTA-GAAAAGATGTCTTT-CT-GAAGTTTTAAC-ACTG---CC-AATCAACGTGAAA-G--AAAACGATATtgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgaacatacatgttccacttgttttaaaaacaatcatcatcagatcaaacacaagatggtattcggacaatctgatgggtacaaaacaacaacaaaacaggaaagcggaaagactggcgaaacacgtttgaaatatttaaaacagcatgtaaaacctaggtcaaggctaaaaagggtttctatccttcaaaatttaaggaatgtggacaatatttgaaagtttgaatcaacatcataaactctttgataaaaaaaaaaacccagtaaaatcctttgccaacatctacatcagaaaaaatcttgtcgaaccggttttccacctgtgacatcaatctgagaaaacggatgctaagcaaaacaacccggatgcagatttaccctacgatggttcatctataacgttttttcagcatgtcactgaacaagatctcaaatctattataatgaaagctcccagtgaatcatgatatctcgaccctactcccacgtctcgtctcaagaagtatatacatgtacatataaccattgctccccttattcaccagaa
gi|12 : ctcaactccgcacacacaaatgtaaaggggaatatgtgctgagatcactatgtaataaaagtttccaTTACAACAA-CAGCAAC-TCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTATATTC-AACCAGGGTG-AATG--AAGA-GATAT-CATGAGCTATTT-AAATTGC-GT---TGTT-ACACTAACATAattcagtagatatgtgcatttgtt
gi|1 : AACATACATG-TTCCACTTGTTTTAAAAACAATCATCATCAGATCAA-ACACAAGATGGTATTCGGACAATCTGA--TGGG--TACAAAACAA-CAACAAAACAGGAAA--GC-GGAAAGAC--TGGCG-AAA--CAC--G-TTTGAAAT------------ATTTAAAACAGCATGTAA-AA--CCTAG-------------GTC-----AAGG-CTAAAAAGGG--T-TTCT----ATCCTTCAA-AATTTAAGGAATGT-GGAC-AATA-T-TTGAAAGTT--TGAA----------------T--CAACATCAT-AAACTC-TTTGATAAAAAAA--AA-------AACCCAGTAAAATC--CTTTG-CCAACATCTACAT-------C-AGAAAAAA-TCTTGTCGAACCGG-TTTTCCA---CCTGTGA--CATCAATCTGAGAAAACG-G---ATGCTAAG-CAAAACAACCC-G-GATGCAGATTTACCC--TACGATGGTT-CATC-TATAA-CGTTTTTTCAGC-AT-GT-CACTGAACAAGATC-TCAAATCTA-TTATAATGAAAGCTCCCAGTGAATCA---TGATATCTCGACCC--TACTCCCACGTCTCGTC-TCAAGAAGTAT---ATACATGTACATAT-AACCATTGCTCCC----C-TTATTC-ACCAGAA
gi|4 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcatttacaacaaacagcaacaccaaaagaaagaaatgttttttaaaatgtttaatattttcaatcaggatgagatggaaggatatattcatgagctatgcgcatctgttagcactaaatatgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatg-ACG------------------ATCTGAGCTAGGGCTGCTAAACAAACAA----ACATGGAA--G--GTAAAGACGCT-GCGAAAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACT--CTC-TGTCTCAGCAAGG-CTAAAGAGGAGATATTCTTTAAACTCTTTAAGAATT-GAGGAATGT-GGAC-AA-G---TTTAAAGCT--TTCT----------------T--CATAATCAT-AAA-CC-TTTGTTAGAAAGGGG---------AA------AAAATC--ATTTACCCCACATCTACAT-TACAATC-AGATAAAA-TCTTGTCGAACCGG-TTT-TCA---CCTTT-A--CA------------AACAGA---ATGCTAAG-TAAAACTACCT-GAGATGCAGATTTA-CC--TATAATAGCT-AATT-TTTAA-TGTTGTTTCCGC--T-AC-C-CTAA--AAAAGC-TCACGTCTA-TCATTATG-AAGCT-CCAGTAAATCATTGTGGAA--TTGAGCCTATATTCCCA-GTCATCTTGTCGGGAAATAT---AT----------AGAAACCGTTGCTT-CATT-C-TTAAT--ACCAGGATAGTCAACT
gi|5 : -ACG------------------ATCTGAA----GGCGGCAAAACAA-CAA----AAATGGAAACG--G-AAAGACGCTGGTG-AAA--CACCGAGCTTGAAATTCATCATCAGTTATTTTAAACAGCATGTAA-AAA-CCTAGGCT--------------CAGCAAGA-CTAAA-AGGA-----TTTCTAA--TTTTCAA-AACTCAAAGAATGT-GGA------------AAAGCT--TTTT----------------T--CAAAATCAT-AAAACCATTTGATGG---GGGAAATTCAAAAAA------GAAATC--CTTTA-CCAGCATCTACAT-------C-GGATAAAA-TCTTGTCGAACCGG-TTT-CCACTTCTTTT-A--TC------------GACA-A---Aaccctatgtgtatataaggagtcacttataaaatctggtcttggcaaagaggatttggaaaactgtcgtcaatctccaatattttgtttccaagattctggtgaaatttgta
gi|10 : cAAA-AAAACCTAGGCTACTTGCTT-------AGTAAGG-TTAAAAAGGA--T-TTCT----AGTCTTCAA-AACTCGAGGATTGT-GGACAAA-A-T-TTGAAAGTT--TTTTGGGTTTTTTTTTCTTCT--CAAAATCAT-AAAGCC-TTTGgtgacatcgatcagggaaaccttgaagcaaacaacagatgctaagcaaaactacctggatgcagatttgccctatgatggtcaatctctaacgttgtttcagcacgacattggacaaaggctcaaatctatcgtgaaagctccctgtaaatcatgtaaagtcgaccctattcccacgtcttttcttaataattctatagaaccatttcttccctttattaccagaataatcaactccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : aaaaaaaaaccAACAAAG-CTAAACATAACGTATTCTTCAAA-TCTC---------GAGTAATGT-CGAC-GA-A-T-TTAAAAGCT--TT----------------------ACAATTGT-CAACCC-TT-----------GGAT-------GA------AAAATTGAA---A-CCAA-----AC-TTTAT-ATC-ATATAAAA-TATTCTCGAACTGG-TTTCCCG---CCTTT-a
gi|14 : AATGT-AGAC-AA-AAT-TTTAAGGTT--TTTT----------------TTCCA-AATCAT-AAACCC-TTTGATGG---GATAAA-------AACCGAC-AAAATT--CTTTA-CCATCAtgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaaaacggatgttatgctaaagcacttggaagcagatttgcaccatgatggtcaatatctgactccatttgtgcatgctcccaaacaagacttcaaatatttttttatggaagc
gi|8 : TC--TTTCA-CCAACATCTACACGTAT-ATC-AGATAGAA-GCTTGTCTAAACGGTTTT-CCA---CCTTT-
gi|5 : A---CCTTG-AAGCA------------AACA-ACAGATGCTAAG-CAAAACTACCT-G-GATGCAGATTTGCCC--TATGATGGTC-AATC-TCTAA-CGTTGTTTCAGC-ACGAC-A-TTGGACAAAGGC-TCAAATCTA-TC---GTGAAAGCTCCCTGTAAATCA-TGTAAAG--TCGACCC--TATTCCCACGTCT-TTTCTTAATAATTCT---AT----------AG-AACCATTTCTTCC----C-TTTATT-ACCAGAATAATCAACTttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaaaacggatgctaagcaaaactaccaggatgcagaatatccaatatgatcgtccatctataacgtagcatgccattgtac
gi|8 : cacgatctgaaggcggcaaaacaacaaaaatggaaacggaaagacgctggtgaaacaccgagcttgaaattcatcatcagttattttaaacagcatgtaaaaacctaggctcagcaagactaaaaggatttctaattttcaaaactcaaagaatgtggaaaagcttttttcaaaatcataaaaccatttgatgggggaaattcaaaaaagaaatcctttaccagcatctacatcggataaaatcttgtcgaaccggtttccacttcttttatcgacaaagtgacatcgatcagggaaA------------AACG-G---ATGCTAAG-CAAAACTACCA-G-GATGCAGA-ATATCCAATATGATCGTC-CATC-TATAA-CGTccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : tctttcaccaacatctacacgtatatcagatagaagcttgtctaaacggttttccacctttttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaA------------AACG-G---ATGTTATGCTAAAGC-ACTT-G-GAAGCAGATTTGCAC--CATGATGGTC-AATA-TCTGA-CTCCATTTGTGC-AT-GCTC-CCAAACAAGACT-TCAAATATT-TTTTTATGGAAGCagcatgccattgtac
gi|13 : aacaaagctaaacataacgtattcttcaaatctcgagtaatgtcgacgaatttaaaagctttacaattgtcaacccttggatgaaaaattgaaaccaaactttatatcatataaaatattctcgaactggtttcccgccttttgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaTCTA-TCATTATGAAAGCTCCCAGCCTATCA-TGTGAAC--TCGACCC--TCTTCCCACGTCT-TTTCTC---AAGGTGTCTAT----------AG-AACCATCGCTCCC----C-TTATTC-ACCACACTAGTCAACT
gi|7 : -----------AG-AACCATTGCTTCC----C-TTGATC-ACCAAAATAGTCAATTcctctatc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTGGTCTTGACAAGACGCTTTTGAAAAGCTATCGTCAGTTTTCAATCTATCGTTTATTGCCAATCTGGAGAAAGTTGTGGCTAGTAGAATGGATCGTCACTCTTGATGGGATGCATTACCAAACAACATGC
Unaligned ( gi|15 ): CTTATAAAATCTGGTCTTGGCAAAGAGGATTTGGAAAACGTTTCGTCCAATCTACA
Unaligned ( gi|16 ): ATAGTCAACTCCTCTATCTAGCAAAAAGTATTTCCTTCTTTATT
Alignments
lowQualScore : 11111111111111
lowQualScore : 111 11 111 1 111 2 11111111111111 555555555555555555 1 1111 11 1111 1 11 444444444444444 3333 111 333333333333333333 1 22222222222222 333333 1 1 3333333 222222222222 11 33333333333 2222222222 11
lowQualScore : 6 44 777 8 8 1 8 444 8 3 0 0 11 8 6 000 2 0 666 3 1 3 44444444444444 8 999999999999999999 88 1 8 7777 11 2222 5 8 0 11 3 3 5 6 7 000000000000000 6 3 6 5555 9 1 66 4 5 5 111 5 7 66 666666666666666666 5 1 0 0 2 55555555555555 888888 2 5 2 1 7 5 5 5 5 1 77 8888888 5 222222222222 5 5 5 5 5 77 66 5 1 5 1 6 6 777 6 3 5 1 0 7 99 2 99 11 1 0 00000000000 6666666666 22
lowQualScore : . .. ... . . . . ... . . . . .. . . ... . . ... . . . .............. . .................. .. . . .... .. .... . . . .. . . . . . ............... . . . .... . . .. . . . ... . . .. .................. . . . . . .............. ...... . . . . . . . . . . .. ....... . ............ . . . . . .. .. . . . . . . ... . . . . . . .. . .. .. . . ........... .......... ..
lowQualScore : 0 66 666 0 0 0 0 000 0 2 8 8 00 0 5 222 0 0 222 2 0 7 00000000000000 0 000000000000000000 22 2 0 0000 00 2222 6 0 6 00 8 2 6 7 5 777777777777777 7 7 7 2222 8 7 33 0 0 0 000 0 6 99 444444444444444444 0 0 0 8 3 77777777777777 666666 8 0 5 4 1 7 7 7 7 4 99 6666666 0 888888888888 0 0 0 7 7 99 77 7 0 7 0 7 7 555 7 0 7 7 1 3 22 5 22 00 0 7 00000000000 6666666666 33
consensus : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGT--------------TCATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGG--AA--G-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTC-TGTCTCAGCAAGG-CTAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGT-GGAC-AA-A-T-TTNAAAGCT--TTCT----------------T-CANAATCAT-AAACCCTTTGATAGAAAGGG-------AAAAA------AAAATCNTTTA-CCAACATCTACATGTAC-ATC-AGATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCC-NA-TCTNTAA-CGTTGTTTCCGC-AT-AC-C-CTGAACAAAAGC-TCACGTCTA-TCATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
Reference ( family-2095 ) : TTTACAACAAACAGCAACATCCANTTTAGGAAGAAATGTCTTT-CA-GAAGGTTTNAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATCGC-GT--CTGTTAACACTAACATANATGATTCCGCTTGTTTTAAAAACAATCATCATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCAAAACAA-CAA----ACATGG--AA--G-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTC-TGTCTCAGCAAGG-CTAAAGAG-GA-ATATTCTTTAAACTCTTCAAAATTCGAGGAATGT-GGAC-AA-A-T-TTNAAAGCT--TTTT----------------T-CANAATCAT-AAACCCTTTGATAGAAAGGG-------AAAAA------AAAATCNTTTA-CCAACATCTACAT-TAC-ATC-AGATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGTC-NA-TCTNTAA-CGTTGTTTCCGC-AT-AC-C-CTGAACAAAAGC-TCAAATCTA-TCATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GACCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGAATAGTCAACT
gi|1 : TTTACAACAAACAGCAACACCAAA---AGAAAGAAATGTTTTT-TA-AAATGTTTAAT-ATTT---TC-AATCAGGATGAGATGGAAGGA-TATATTCATGAGCTAT------GCGC-AT--CTGTTAGCACTAA-ATA
gi|1 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcaAACATACATG-TTCCACTTGTTTTAAAAACAATCATCATCAGATCAA-ACACAAGATGGTATTCGGACAATCTGA--TGGG--TACAAAACAA-CAACAAAACAGGA--AA--GCGGAAAGAC--TGGCG-AAA--CAC--G-TTTGAAAT------------ATTTAAAACAGCATGTAA-AA--CCTAGGT------------------CAAGG-CTAAAAAG-GG--T-TTCT----ATCCTTCAAAATTTAAGGAATGT-GGAC-AATA-T-TTGAAAGTT--TGAA----------------T-CAACATCAT-AAACTCTTTGATAAAAAA---------AAAAACCCAGTAAAATCCTTTG-CCAACATCTACAT-------C-AGAAAAAA-TCTTGTCGAACCGG-TTTTCCAC--CTGTG------AC-ATCAATCTGAGAAAAC-GG-AT-GCTAAGCAAAACAACCC-G-GATGCAGATTTACCC--TACGATGGTT-CA-TCTATAA-CGTTTTTTCAGC-AT-GT-CACTGAACAAGATC-TCAAATCTA-TTATAATGAAAGCTCCCAGTGAATCAT---GATATCTCGACCC--TACTCCCACGTCT-CGTCTCAAGAAGTATATACATGTACATATAACCATTGCTCC-----C----CTTATT-CACCAGAAtgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgaacatacatgttccacttgttttaaaaacaatcatcatcagatcaaacacaagatggtattcggacaatctgatgggtacaaaacaacaacaaaacaggaaagcggaaagactggcgaaacacgtttgaaatatttaaaacagcatgtaaaacctaggtcaaggctaaaaagggtttctatccttcaaaatttaaggaatgtggacaatatttgaaagtttgaatcaacatcataaactctttgataaaaaaaaaaacccagtaaaatcctttgccaacatctacatcagaaaaaatcttgtcgaaccggttttccacctgtgacatcaatctgagaaaacggatgctaagcaaaacaacccggatgcagatttaccctacgatggttcatctataacgttttttcagcatgtcactgaacaagatctcaaatctattataatgaaagctcccagtgaatcatgatatctcgaccctactcccacgtctcgtctcaagaagtatatacatgtacatataaccattgctccccttattcaccagaa
gi|10 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcatttacaacaaacagcaacaccaaaagaaagaaatgttttttaaaatgtttaatattttcaatcaggatgagatggaaggatatattcatgagctatgcgcatctgttagcactaaatatgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgAAA-AAAACCTAGGCTACTTGCTT-------AGTAAGG-TTAAAAAG-GA--T-TTCT----AGTCTTCAAAACTCGAGGATTGT-GGACAAA-A-T-TTGAAAGTT--TTTTGGGTTTTTTTTTCTTCT-CAAAATCAT-AAAGCCTTTGA
gi|12 : aaaaaaaaaccTTACAACAA-CAGCAAC-TCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTATATTC-AACCAGGGTG-AATG--AAGA-GATAT-CATGAGCTATTT-AAATTGC-GT---TGTT-ACACTAACATA
gi|13 : TCTA-TCATTATGAAAGCTCCCAGCCTATCAT-GTGAACTC--GACCC--TCTTCCCACGTCTT-TTCTCAAGGTGTCTATA---G-------AACCATCGCTCC-----C----CTTATT-CACCACACTAGTCAACT
gi|14 : AATGT-AGAC-AA-AAT-TTTAAGGTT--TTTT----------------TTCCAAATCAT-AAACCCTTTGATGG---GAT-------AAAAACCGAC-AAAATTCTTTA-CCATCAcctctatc
gi|2 : TTTACAACAAACAG-AACATCCATTTTAGGAAGAAATATCTTTTCATGAAGGTTTTATTATTA---TCCAACCAGG-T-AAATG--AAGA-GATATCCATGAGCTATTTTAAATTGCTGCTCCTGTTAACACTAACATAAATGATTCCGCTTGT--------------TCATCAGACCAAGACG------------------ATCTGAGCTAGGGCTGC-AAACAA-CAA----ACATGGAAAA--A-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAG-TATTTAAAACAGCATGAAATAAATCTTAGAC-ACTTGCTCTTGTCTCAGCAAGGCCTAAAGAGAGA-ATATTCTTTAAACTCTTTAAA--TTGAGGAATGTGGGAC-AA-T-TGTTTAAAGCTTCTTCT----------------T-CATAATCATAAAACCCTTTGTTAGAAAGGG-------AAAAA------AATATCATTTA-CCAA-ATCTACATGTAC-ATCAAGATAAAAGTCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCTCG-GATGCAGATTTACCC--TATAATGCCCTTATTCTTTAATTGTTGTTTCCGCAAT-AC-C-CTGAACAAAAGCGTCACGTCTATTCATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTTCTTGTCGGGAAATATATA---GC------AACCGTTGCTTCCAATAC----TTTAATAGACCAGGATAGTCAACT
gi|3 : aaccgtttctctgcgatgtattttgatcactatgcagaaaaaggctTTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGT--------------TCATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCTAAACAA-CAA----ACATGG--AA--G-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACTTGCTC-TGTCTCAGCAAGG-CTAAAGAG-GAGATATTCTTTAAACTCTTTAAAATT-GAGGAATGT-GGAC-AA-G-T-TTTAAAGCT--TTCT----------------T-CATAATCAT-AAACCCTTTGTTAGAAAGGG-------GAAAA------AAAATCATTTA-CCAACATCTACATGTAC-ATC-AGATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCT-G-GATGCAGATTTACCC--TATAATGGCC-TA-TTTTTAA-TGTTGTTTCCGC-AT-AC-C-CTGAACAAAAGC-TCACGTCTA-TCATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTCTTTGTTAGAAAGGGGA-A---G-------AACCGTTGCTTC-----CATTACTTAAT-AACCAGGATAGTCAACTaccctaatgtgattataaggagtcacttataaaatctggtcttggcaaagag
gi|4 : -ACG------------------ATCTGAGCTAGGGCTGCTAAACAAACAA----ACATGG--AA--G-GTAAAGACGCT-GCGAAAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACT--CTC-TGTCTCAGCAAGG-CTAAAGAG-GAGATATTCTTTAAACTCTTTAAGAATTGAGGAATGT-GGAC-AA-G-T-TT-AAAGCT--TTCT----------------T-CATAATCAT-AAA-CCTTTGTTAGAAAGGG---------GAA------AAAATCATTTACCCCACATCTACAT-TACAATC-AGATAAAA-TCTTGTCGAACCGG-TTT-TCAC--CTTT-------AC-A------------AACAGA-AT-GCTAAGTAAAACTACCT-GAGATGCAGATTTA-CC--TATAATAGCT-AA-TTTTTAA-TGTTGTTTCCGC--T-AC-C-CTAA--AAAAGC-TCACGTCTA-TCATTATG-AAGCT-CCAGTAAATCATTGTGGAATT--GAGCCTATATTCCCA-GTCATCTTGTCGGGAAATATATA---GA------AACCGTTGCTTCAT---T----CTTAAT--ACCAGGATAGTCAACT
gi|5 : -ACG------------------ATCTGAA----GGCGGCAAAACAA-CAA----AAATGG--AAACG-G-AAAGACGCTGGTG-AAA--CACCGAGCTTGAAATTCATCATCAGTTATTTTAAACAGCATGTAA-AAA-CCTAGGCT--------------CAGCAAGA-CTAAA-AG-GA-----TTTCTAA--TTTTCAAAACTCAAAGAATGT-GGA------------AAAGCT--TTTT----------------T-CAAAATCATAAAACCATTTGATGG---GGGAAATTCAAAAAA------GAAATCCTTTA-CCAGCATC------TAC-ATC-GGATAAAA-TCTTGTCGAACCGG-TTT-CCACTTCTTTTATCG--AC-A------------AAaccctatgtgtatataaggagtcacttataaaatctggtcttggcaaagaggatttggaaaactgtcgtcaatctccaatattttgtttccaagattctggtgaaatttgta
gi|5 : c------------AAC-AG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTGCCC--TATGATGGTC-AA-TCTCTAA-CGTTGTTTCAGC-ACGAC-A-TTGGACAAAGGC-TCAAATCTA-TC---GTGAAAGCTCCCTGTAAATCA-TGTAAAGTC--GACCC--TATTCCCACGTCTT-TTCTTAATAATTCTATA---G-------AACCATTTCTTC-----C----CTTTAT-TACCAGAATAATCAACTgtgacatcgatcagggaaaccttgaagcaaacaacagatgctaagcaaaactacctggatgcagatttgccctatgatggtcaatctctaacgttgtttcagcacgacattggacaaaggctcaaatctatcgtgaaagctccctgtaaatcatgtaaagtcgaccctattcccacgtcttttcttaataattctatagaaccatttcttccctttattaccagaataatcaactccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : cacgatctgaaggcggcaaaacaacaaaaatggaaacggaaagacgctggtgaaacaccgagcttgaaattcatcatcagttattttaaacagcatgtaaaaacctaggctcagcaagactaaaaggatttctaattttcaaaactcaaagaatgtggaaaagcttttttcaaaatcataaaaccatttgatgggggaaattcaaaaaagaaatcctttaccagcatctacatcggataaaatcttgtcgaaccggtttccacttcttttatcgacaaagtgacatcgatcagggaaaccttgaagcaaacATTCTTCAAATCTCGAGTAATGT-CGAC-GA-A-T-TTAAAAGCT--TT---------------------ACAATTGT-CAACCCTTGGAT-------G-------AAAAATT----GAA-------A-CCAA-----ACTT-TAT-ATC-ATATAAAA-TATTCTCGAACTGG-TTTCCCGC--CTTT-------ccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : aacaaagctaaacataacgt-A------------AAC-GG-AT-GTTATGCTAAAGCACTT-G-GAAGCAGATTTGCAC--CATGATGGTC-AA-TATCTGA-CTCCATTTGTGC-AT-GCTC-CCAAACAAGACT-TCAAATATT-TTTTTATGGAAGCtgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaaaacggatgttatgctaaagcacttggaagcagatttgcaccatgatggtcaatatctgactccatttgtgcatgctcccaaacaagacttcaaatatttttttatggaagc
gi|7 : aacaaagctaaacataacgtattcttcaaatctcgagtaatgtcgacgaatttaaaagctttacaattgtcaacccttggatgaaaaattgaaaccaaactttatatcatataaaatattctcgaactggtttcccgccttttgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaTATGTA---G-------AACCATTGCTTC-----C----CTTGAT-CACCAAAATAGTCAATT
gi|8 : tatgaTCTTTCA-CCAACATCTACACGTAT-ATC-AGATAGAA-GCTTGTCTAAACGGTTTT-CCAC--CTTTTTCATCGACAA------------AAC-GGCATCGATCAGGAAAACcctctatcgaccagaaagtatttccttttattattattttttttcatttaaggaggcgtttgttcgacctcttctttaaaatcctggtcttgacaaagaagttttgaaaaactattgcccaatctccaatctttgttttgtttccaagactccggagaaagctgtgacaaatagaatggatagtcaccttga
gi|8 : -A------------AAC-GG-AT-GCTAAGCAAAACTACCA-G-GATGCAGA-ATATCCAATATGATCGTC-CA-TCTATAA-CGTcttgaaggaaaaaacggatgctaagcaaaactaccaggatgcagaatatccaatatgatcgtccatctataacgtagcatgccattgtac
gi|9 : tctttcaccaacatctacacgtatatcagatagaagcttgtctaaacggttttccacctttttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaTTTACTACCATAAGCAACA--CAGAGTAGAAA-AGATGTCTTT-CT-GAAGTTTTAAC-ACTG---CC-AATCAACGTGAAA-G--AAAACGATATagcatgccattgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTGGTCTTGACAAGACGCTTTTGAAAAGCTATCGTCAGTTTTCAATCTATCGTTTATTGCCAATCTGGAGAAAGTTGTGGCTAGTAGAATGGATCGTCACTCTTGATGGGATGCATTACCAAACAACATGC
Unaligned ( gi|15 ): CTTATAAAATCTGGTCTTGGCAAAGAGGATTTGGAAAACGTTTCGTCCAATCTACA
Unaligned ( gi|16 ): ATAGTCAACTCCTCTATCTAGCAAAAAGTATTTCCTTCTTTATT
Alignments
lowQualScore : 111 11 111 1 111 1 77777777777777 555555555555555555 1111 22222 1 11 444444444444444 3333 111 333333333333333333333 111 333333333333333 11111 1 3333333 222222222222 11 33333333333 2222222222 11
lowQualScore : 6 44 777 8 8 1 8 444 8 3 0 0 11 8 6 000 0 666 3 3 88888888888888 8 999999999999999999 88 8 8 7777 33333 5 8 0 11 3 3 5 6 7 000000000000000 6 3 6 5555 9 1 88 5 5 111 5 7 666666666666666666666 5 1 77 5 0 2 111 3 0 999999999999999 2 5 2 88888 5 5 5 1 77 8888888 5 222222222222 5 5 5 5 5 77 66 5 1 5 1 666 777 6 2 5 1 0 7 99 1 99 11 1 0 00000000000 6666666666 22
lowQualScore : . .. ... . . . . ... . . . . .. . . ... . ... . . .............. . .................. .. . . .... ..... . . . .. . . . . . ............... . . . .... . . .. . . ... . . ..................... . . .. . . . ... . . ............... . . . ..... . . . . .. ....... . ............ . . . . . .. .. . . . . ... ... . . . . . . .. . .. .. . . ........... .......... ..
lowQualScore : 0 66 666 0 0 4 0 000 0 2 8 8 00 0 5 222 0 222 2 3 33333333333333 0 000000000000000000 22 8 0 0000 22222 6 0 6 00 8 2 6 7 5 777777777777777 7 7 7 2222 8 7 33 0 0 000 0 6 666666666666666666666 0 0 55 0 8 3 000 0 1 111111111111111 8 0 5 11111 7 7 7 4 99 6666666 0 888888888888 0 0 0 7 7 99 77 7 0 7 0 888 555 7 5 7 7 1 3 22 0 22 00 0 7 00000000000 6666666666 33
consensus : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
Reference ( family-2095 ) : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
gi|1 : TTTACAACAAACAGCAACACCAAA---AGAAAGAAATGTTTTT-TA-AAATGTTTAAT-ATTT---TC-AATCAGGATGAGATGGAAGGA-TATATTCATGAGCTAT------GCGC-AT--CTGTTAGCACTAA-ATA
gi|1 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcaAACATACATG-TTCCACTTGTTTTAAAAACAATCATCATCAGATCAA-ACACAAGATGGTATTCGGACAATCTGA--TGGG--TACAAAACAA-CAACAAAACAGGAAA--GC-GGAAAGAC--TGGCG-AAA--CAC--G-TTTGAAAT------------ATTTAAAACAGCATGTAA-AA--CCTAGGT------------------CAAGGC-TAAAAAG-GG--T-TTCT----ATCCTTCAAAATTTAAGGAATGTGG-AC-AATA-T-TTGAAAGTTT--GAA----------------T-CAACATCATAAA-CTC-TTTGATAAAAAA--AAA-------AACCCAGTAAAATCCTTTG-CCAACATCTACAT-------CA-GAAAAAA-TCTTGTCGAACCGG-TTTTCCAC--CTGTG------AC-ATCAATCTGAGAAAAC-GG-AT-GCTAAGCAAAACAACCC-G-GATGCAGATTTACCC--TACGATGGTTC-AT-CTATAAC-GTTTTTTCAGCA-T-GT-CACTGAACAAGATC-TCAAATCTAT-TATAATGAAAGCTCCCAGTGAATCAT---GATATCTCGACCC--TACTCCCACGTCT-CGTCTCAAGAAGTATATACATGTACATATAACCATTGCTCC-----C----CTTATT-CACCAGAAtgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgaacatacatgttccacttgttttaaaaacaatcatcatcagatcaaacacaagatggtattcggacaatctgatgggtacaaaacaacaacaaaacaggaaagcggaaagactggcgaaacacgtttgaaatatttaaaacagcatgtaaaacctaggtcaaggctaaaaagggtttctatccttcaaaatttaaggaatgtggacaatatttgaaagtttgaatcaacatcataaactctttgataaaaaaaaaaacccagtaaaatcctttgccaacatctacatcagaaaaaatcttgtcgaaccggttttccacctgtgacatcaatctgagaaaacggatgctaagcaaaacaacccggatgcagatttaccctacgatggttcatctataacgttttttcagcatgtcactgaacaagatctcaaatctattataatgaaagctcccagtgaatcatgatatctcgaccctactcccacgtctcgtctcaagaagtatatacatgtacatataaccattgctccccttattcaccagaa
gi|10 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcatttacaacaaacagcaacaccaaaagaaagaaatgttttttaaaatgtttaatattttcaatcaggatgagatggaaggatatattcatgagctatgcgcatctgttagcactaaatatgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgAAA-AAAACCTAGGCTACTTGCTT-------AGTAAGGT-TAAAAAG-GA--T-TTCT----AGTCTTCAAAACTCGAGGATTGTGG-ACAAA-A-T-TTGAAAGTTT--TTTGGGTTTTTTTTTCTTCT-CAAAATCATAAA-GCC-TTTGA
gi|12 : aaaaaaaaaccTTACAACAA-CAGCAAC-TCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTATATTC-AACCAGGGTG-AATG--AAGA-GATAT-CATGAGCTATTT-AAATTGC-GT---TGTT-ACACTAACATA
gi|13 : TCTAT-CATTATGAAAGCTCCCAGCCTATCAT-GTGAACTC--GACCC--TCTTCCCACGTCTT-TTCTCAAGGTGTCTATA---G-------AACCATCGCTCC-----C----CTTATT-CACCACACTAGTCAACT
gi|14 : AATGTAG-AC-AA-AAT-TTTAAGGTTT--TTT----------------TTCCAAATCATAAA-CCC-TTTGATGG---GATAAA-------AACCGAC-AAAATTCTTTA-CCATCAcctctatc
gi|2 : TTTACAACAAACAG-AACATCCATTTTAGGAAGAAATATCTTTTCATGAAGGTTTTATTATTA---TCCAACCAGG-T-AAATG--AAGA-GATATCCATGAGCTATTTTAAATTGCTGCTCCTGTTAACACTAACATAAATGATTCCGCTTGTT--------------CATCAGACCAAGACG------------------ATCTGAGCTAGGGCTGC-AAACAA-CAA----ACATGGAA--AAAGTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGT-ATTTAAAACAGCATGAAATAAATCTTAGAC-ACTTGCTCTTGTCTCAGCAAGGCCTAAAGAGAGA-ATATTCTTTAAACTCTTTAAA--TTGAGGAATGTGGGAC-AA-T-TGTTTAAAGCTTCTTCT----------------T-CATAATCATAAAACCC-TTTGTTAGAAAGGGAAA-------AA------AATATCATTTA-CCAA-ATCTACATGTAC-ATCAAGATAAAAGTCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCTCG-GATGCAGATTTACCC--TATAATGCCCTTATTCTTTAATTGTTGTTTCCGCAAT-AC-C-CTGAACAAAAGCGTCACGTCTATTCATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTTCTTGTCGGGAAATATATA---GC------AACCGTTGCTTCCAATAC----TTTAATAGACCAGGATAGTCAACT
gi|3 : aaccgtttctctgcgatgtattttgatcactatgcagaaaaaggctTTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCTAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAAA-TTGAGGAATGTGG-AC-AA-G-T-TTTAAAGCTT--TCT----------------T-CATAATCATAAA-CCC-TTTGTTAGAAAGGGGAA-------AA------AAAATCATTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCT-G-GATGCAGATTTACCC--TATAATGGCCT-AT-TTTTAAT-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTCTTTGTTAGAAAGGGGA-A---G-------AACCGTTGCTTC-----CATTACTTAAT-AACCAGGATAGTCAACTaccctaatgtgattataaggagtcacttataaaatctggtcttggcaaagag
gi|4 : -ACG------------------ATCTGAGCTAGGGCTGCTAAACAAACAA----ACATGGAA--G--GTAAAGACGCT-GCGAAAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACT--CTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAGAATTGAGGAATGTGG-AC-AA-G-T-TT-AAAGCTT--TCT----------------T-CATAATCATAAA--CC-TTTGTTAGAAAGGG--G-------AA------AAAATCATTTACCCCACATCTACAT-TACAATCA-GATAAAA-TCTTGTCGAACCGG-TTT-TCAC--CTTT-------AC-A------------AACAGA-AT-GCTAAGTAAAACTACCT-GAGATGCAGATTTA-CC--TATAATAGCTA-AT-TTTTAAT-GTTGTTTCCGC--T-AC-C-CTAA--AAAAGC-TCACGTCTAT-CATTATG-AAGCT-CCAGTAAATCATTGTGGAATT--GAGCCTATATTCCCA-GTCATCTTGTCGGGAAATATATA---GA------AACCGTTGCTTCAT---T----CTTAAT--ACCAGGATAGTCAACT
gi|5 : -ACG------------------ATCTGAA----GGCGGCAAAACAA-CAA----AAATGGAAACG--G-AAAGACGCTGGTG-AAA--CACCGAGCTTGAAATTCATCATCAGTTATTTTAAACAGCATGTAA-AAA-CCTAGGCT--------------CAGCAAGAC-TAAA-AG-GA-----TTTCTAA--TTTTCAAAACTCAAAGAATGTGG-A------------AAAGCTT--TTT----------------T-CAAAATCATAAA-ACCATTTGATGG---GGGAAATTCAAAAAA------GAAATCCTTTA-CCAGCATCTACAT-------CG-GATAAAA-TCTTGTCGAACCGG-TTT-CCACTTCTTTTATCG--AC-A------------AAaccctatgtgtatataaggagtcacttataaaatctggtcttggcaaagaggatttggaaaactgtcgtcaatctccaatattttgtttccaagattctggtgaaatttgta
gi|5 : c------------AAC-AG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTGCCC--TATGATGGTCA-AT-CTCTAAC-GTTGTTTCAGCA-CGAC-A-TTGGACAAAGGC-TCAAATCTAT-C---GTGAAAGCTCCCTGTAAATCA-TGTAAAGTC--GACCC--TATTCCCACGTCTT-TTCTTAATAATTCTATA---G-------AACCATTTCTTC-----C----CTTTAT-TACCAGAATAATCAACTgtgacatcgatcagggaaaccttgaagcaaacaacagatgctaagcaaaactacctggatgcagatttgccctatgatggtcaatctctaacgttgtttcagcacgacattggacaaaggctcaaatctatcgtgaaagctccctgtaaatcatgtaaagtcgaccctattcccacgtcttttcttaataattctatagaaccatttcttccctttattaccagaataatcaactccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : cacgatctgaaggcggcaaaacaacaaaaatggaaacggaaagacgctggtgaaacaccgagcttgaaattcatcatcagttattttaaacagcatgtaaaaacctaggctcagcaagactaaaaggatttctaattttcaaaactcaaagaatgtggaaaagcttttttcaaaatcataaaaccatttgatgggggaaattcaaaaaagaaatcctttaccagcatctacatcggataaaatcttgtcgaaccggtttccacttcttttatcgacaaagtgacatcgatcagggaaaccttgaagcaaacATTCTTCAAATCTCGAGTAATGTCG-AC-GA-A-T-TTAAAAGCTT--T---------------------ACAATTGTCAA-CCC-TTGGAT-------GAAA-------AATT----GAA-------A-CCAA-----AC-TTTAT-ATCA-TATAAAA-TATTCTCGAACTGG-TTTCCCGC--CTTT-------ccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : aacaaagctaaacataacgt-A------------AAC-GG-AT-GTTATGCTAAAGCACTT-G-GAAGCAGATTTGCAC--CATGATGGTCA-AT-ATCTGAC-TCCATTTGTGCA-T-GCTC-CCAAACAAGACT-TCAAATATTT-TTTTATGGAAGCtgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaaaacggatgttatgctaaagcacttggaagcagatttgcaccatgatggtcaatatctgactccatttgtgcatgctcccaaacaagacttcaaatatttttttatggaagc
gi|7 : aacaaagctaaacataacgtattcttcaaatctcgagtaatgtcgacgaatttaaaagctttacaattgtcaacccttggatgaaaaattgaaaccaaactttatatcatataaaatattctcgaactggtttcccgccttttgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaTATGTA---G-------AACCATTGCTTC-----C----CTTGAT-CACCAAAATAGTCAATT
gi|8 : tatgaTCTTTCA-CCAACATCTACACGTAT-ATCA-GATAGAA-GCTTGTCTAAACGGTTTT-CCAC--CTTTTTCATCGACAA------------AAC-GGCATCGATCAGGAAAACcctctatcgaccagaaagtatttccttttattattattttttttcatttaaggaggcgtttgttcgacctcttctttaaaatcctggtcttgacaaagaagttttgaaaaactattgcccaatctccaatctttgttttgtttccaagactccggagaaagctgtgacaaatagaatggatagtcaccttga
gi|8 : -A------------AAC-GG-AT-GCTAAGCAAAACTACCA-G-GATGCAGA-ATATCCAATATGATCGTCC-AT-CTATAAC-GTcttgaaggaaaaaacggatgctaagcaaaactaccaggatgcagaatatccaatatgatcgtccatctataacgtagcatgccattgtac
gi|9 : tctttcaccaacatctacacgtatatcagatagaagcttgtctaaacggttttccacctttttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaTTTACTACCATAAGCAACA--CAGAGTA-GAAAAGATGTCTTT-CT-GAAGTTTTAAC-ACTG---CC-AATCAACGTGAAA-G--AAAACGATATagcatgccattgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTGGTCTTGACAAGACGCTTTTGAAAAGCTATCGTCAGTTTTCAATCTATCGTTTATTGCCAATCTGGAGAAAGTTGTGGCTAGTAGAATGGATCGTCACTCTTGATGGGATGCATTACCAAACAACATGC
Unaligned ( gi|15 ): CTTATAAAATCTGGTCTTGGCAAAGAGGATTTGGAAAACGTTTCGTCCAATCTACA
Unaligned ( gi|16 ): ATAGTCAACTCCTCTATCTAGCAAAAAGTATTTCCTTCTTTATT
Alignments
lowQualScore : 111 11 111 1 111 1 77777777777777 555555555555555555 1111 22222 1 11 444444444444444 3333 111 333333333333333333333 111 333333333333333 11111 1 3333333 222222222222 11 33333333333 2222222222 11
lowQualScore : 6 44 777 8 8 1 8 444 8 3 0 0 11 8 6 000 0 666 3 3 88888888888888 8 999999999999999999 88 8 8 7777 33333 5 8 0 11 3 3 5 6 7 000000000000000 6 3 6 5555 9 1 88 5 5 111 5 7 666666666666666666666 5 1 77 5 0 2 111 3 0 999999999999999 2 5 2 88888 5 5 5 1 77 8888888 5 222222222222 5 5 5 5 5 77 66 5 1 5 1 666 777 6 2 5 1 0 7 99 1 99 11 1 0 00000000000 6666666666 22
lowQualScore : . .. ... . . . . ... . . . . .. . . ... . ... . . .............. . .................. .. . . .... ..... . . . .. . . . . . ............... . . . .... . . .. . . ... . . ..................... . . .. . . . ... . . ............... . . . ..... . . . . .. ....... . ............ . . . . . .. .. . . . . ... ... . . . . . . .. . .. .. . . ........... .......... ..
lowQualScore : 0 66 666 0 0 4 0 000 0 2 8 8 00 0 5 222 0 222 2 3 33333333333333 0 000000000000000000 22 8 0 0000 22222 6 0 6 00 8 2 6 7 5 777777777777777 7 7 7 2222 8 7 33 0 0 000 0 6 666666666666666666666 0 0 55 0 8 3 000 0 1 111111111111111 8 0 5 11111 7 7 7 4 99 6666666 0 888888888888 0 0 0 7 7 99 77 7 0 7 0 888 555 7 5 7 7 1 3 22 0 22 00 0 7 00000000000 6666666666 33
consensus : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
Reference ( family-2095 ) : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
gi|1 : TTTACAACAAACAGCAACACCAAA---AGAAAGAAATGTTTTT-TA-AAATGTTTAAT-ATTT---TC-AATCAGGATGAGATGGAAGGA-TATATTCATGAGCTAT------GCGC-AT--CTGTTAGCACTAA-ATA
gi|1 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcaAACATACATG-TTCCACTTGTTTTAAAAACAATCATCATCAGATCAA-ACACAAGATGGTATTCGGACAATCTGA--TGGG--TACAAAACAA-CAACAAAACAGGAAA--GC-GGAAAGAC--TGGCG-AAA--CAC--G-TTTGAAAT------------ATTTAAAACAGCATGTAA-AA--CCTAGGT------------------CAAGGC-TAAAAAG-GG--T-TTCT----ATCCTTCAAAATTTAAGGAATGTGG-AC-AATA-T-TTGAAAGTTT--GAA----------------T-CAACATCATAAA-CTC-TTTGATAAAAAA--AAA-------AACCCAGTAAAATCCTTTG-CCAACATCTACAT-------CA-GAAAAAA-TCTTGTCGAACCGG-TTTTCCAC--CTGTG------AC-ATCAATCTGAGAAAAC-GG-AT-GCTAAGCAAAACAACCC-G-GATGCAGATTTACCC--TACGATGGTTC-AT-CTATAAC-GTTTTTTCAGCA-T-GT-CACTGAACAAGATC-TCAAATCTAT-TATAATGAAAGCTCCCAGTGAATCAT---GATATCTCGACCC--TACTCCCACGTCT-CGTCTCAAGAAGTATATACATGTACATATAACCATTGCTCC-----C----CTTATT-CACCAGAAtgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgaacatacatgttccacttgttttaaaaacaatcatcatcagatcaaacacaagatggtattcggacaatctgatgggtacaaaacaacaacaaaacaggaaagcggaaagactggcgaaacacgtttgaaatatttaaaacagcatgtaaaacctaggtcaaggctaaaaagggtttctatccttcaaaatttaaggaatgtggacaatatttgaaagtttgaatcaacatcataaactctttgataaaaaaaaaaacccagtaaaatcctttgccaacatctacatcagaaaaaatcttgtcgaaccggttttccacctgtgacatcaatctgagaaaacggatgctaagcaaaacaacccggatgcagatttaccctacgatggttcatctataacgttttttcagcatgtcactgaacaagatctcaaatctattataatgaaagctcccagtgaatcatgatatctcgaccctactcccacgtctcgtctcaagaagtatatacatgtacatataaccattgctccccttattcaccagaa
gi|10 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcatttacaacaaacagcaacaccaaaagaaagaaatgttttttaaaatgtttaatattttcaatcaggatgagatggaaggatatattcatgagctatgcgcatctgttagcactaaatatgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgAAA-AAAACCTAGGCTACTTGCTT-------AGTAAGGT-TAAAAAG-GA--T-TTCT----AGTCTTCAAAACTCGAGGATTGTGG-ACAAA-A-T-TTGAAAGTTT--TTTGGGTTTTTTTTTCTTCT-CAAAATCATAAA-GCC-TTTGA
gi|12 : aaaaaaaaaccTTACAACAA-CAGCAAC-TCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTATATTC-AACCAGGGTG-AATG--AAGA-GATAT-CATGAGCTATTT-AAATTGC-GT---TGTT-ACACTAACATA
gi|13 : TCTAT-CATTATGAAAGCTCCCAGCCTATCAT-GTGAACTC--GACCC--TCTTCCCACGTCTT-TTCTCAAGGTGTCTATA---G-------AACCATCGCTCC-----C----CTTATT-CACCACACTAGTCAACT
gi|14 : AATGTAG-AC-AA-AAT-TTTAAGGTTT--TTT----------------TTCCAAATCATAAA-CCC-TTTGATGG---GATAAA-------AACCGAC-AAAATTCTTTA-CCATCAcctctatc
gi|2 : TTTACAACAAACAG-AACATCCATTTTAGGAAGAAATATCTTTTCATGAAGGTTTTATTATTA---TCCAACCAGG-T-AAATG--AAGA-GATATCCATGAGCTATTTTAAATTGCTGCTCCTGTTAACACTAACATAAATGATTCCGCTTGTT--------------CATCAGACCAAGACG------------------ATCTGAGCTAGGGCTGC-AAACAA-CAA----ACATGGAA--AAAGTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGT-ATTTAAAACAGCATGAAATAAATCTTAGAC-ACTTGCTCTTGTCTCAGCAAGGCCTAAAGAGAGA-ATATTCTTTAAACTCTTTAAA--TTGAGGAATGTGGGAC-AA-T-TGTTTAAAGCTTCTTCT----------------T-CATAATCATAAAACCC-TTTGTTAGAAAGGGAAA-------AA------AATATCATTTA-CCAA-ATCTACATGTAC-ATCAAGATAAAAGTCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCTCG-GATGCAGATTTACCC--TATAATGCCCTTATTCTTTAATTGTTGTTTCCGCAAT-AC-C-CTGAACAAAAGCGTCACGTCTATTCATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTTCTTGTCGGGAAATATATA---GC------AACCGTTGCTTCCAATAC----TTTAATAGACCAGGATAGTCAACT
gi|3 : aaccgtttctctgcgatgtattttgatcactatgcagaaaaaggctTTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCTAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAAA-TTGAGGAATGTGG-AC-AA-G-T-TTTAAAGCTT--TCT----------------T-CATAATCATAAA-CCC-TTTGTTAGAAAGGGGAA-------AA------AAAATCATTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCT-G-GATGCAGATTTACCC--TATAATGGCCT-AT-TTTTAAT-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTCTTTGTTAGAAAGGGGA-A---G-------AACCGTTGCTTC-----CATTACTTAAT-AACCAGGATAGTCAACTaccctaatgtgattataaggagtcacttataaaatctggtcttggcaaagag
gi|4 : -ACG------------------ATCTGAGCTAGGGCTGCTAAACAAACAA----ACATGGAA--G--GTAAAGACGCT-GCGAAAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACT--CTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAGAATTGAGGAATGTGG-AC-AA-G-T-TT-AAAGCTT--TCT----------------T-CATAATCATAAA--CC-TTTGTTAGAAAGGG--G-------AA------AAAATCATTTACCCCACATCTACAT-TACAATCA-GATAAAA-TCTTGTCGAACCGG-TTT-TCAC--CTTT-------AC-A------------AACAGA-AT-GCTAAGTAAAACTACCT-GAGATGCAGATTTA-CC--TATAATAGCTA-AT-TTTTAAT-GTTGTTTCCGC--T-AC-C-CTAA--AAAAGC-TCACGTCTAT-CATTATG-AAGCT-CCAGTAAATCATTGTGGAATT--GAGCCTATATTCCCA-GTCATCTTGTCGGGAAATATATA---GA------AACCGTTGCTTCAT---T----CTTAAT--ACCAGGATAGTCAACT
gi|5 : -ACG------------------ATCTGAA----GGCGGCAAAACAA-CAA----AAATGGAAACG--G-AAAGACGCTGGTG-AAA--CACCGAGCTTGAAATTCATCATCAGTTATTTTAAACAGCATGTAA-AAA-CCTAGGCT--------------CAGCAAGAC-TAAA-AG-GA-----TTTCTAA--TTTTCAAAACTCAAAGAATGTGG-A------------AAAGCTT--TTT----------------T-CAAAATCATAAA-ACCATTTGATGG---GGGAAATTCAAAAAA------GAAATCCTTTA-CCAGCATCTACAT-------CG-GATAAAA-TCTTGTCGAACCGG-TTT-CCACTTCTTTTATCG--AC-A------------AAaccctatgtgtatataaggagtcacttataaaatctggtcttggcaaagaggatttggaaaactgtcgtcaatctccaatattttgtttccaagattctggtgaaatttgta
gi|5 : c------------AAC-AG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTGCCC--TATGATGGTCA-AT-CTCTAAC-GTTGTTTCAGCA-CGAC-A-TTGGACAAAGGC-TCAAATCTAT-C---GTGAAAGCTCCCTGTAAATCA-TGTAAAGTC--GACCC--TATTCCCACGTCTT-TTCTTAATAATTCTATA---G-------AACCATTTCTTC-----C----CTTTAT-TACCAGAATAATCAACTgtgacatcgatcagggaaaccttgaagcaaacaacagatgctaagcaaaactacctggatgcagatttgccctatgatggtcaatctctaacgttgtttcagcacgacattggacaaaggctcaaatctatcgtgaaagctccctgtaaatcatgtaaagtcgaccctattcccacgtcttttcttaataattctatagaaccatttcttccctttattaccagaataatcaactccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : cacgatctgaaggcggcaaaacaacaaaaatggaaacggaaagacgctggtgaaacaccgagcttgaaattcatcatcagttattttaaacagcatgtaaaaacctaggctcagcaagactaaaaggatttctaattttcaaaactcaaagaatgtggaaaagcttttttcaaaatcataaaaccatttgatgggggaaattcaaaaaagaaatcctttaccagcatctacatcggataaaatcttgtcgaaccggtttccacttcttttatcgacaaagtgacatcgatcagggaaaccttgaagcaaacATTCTTCAAATCTCGAGTAATGTCG-AC-GA-A-T-TTAAAAGCTT--T---------------------ACAATTGTCAA-CCC-TTGGAT-------GAAA-------AATT----GAA-------A-CCAA-----AC-TTTAT-ATCA-TATAAAA-TATTCTCGAACTGG-TTTCCCGC--CTTT-------ccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : aacaaagctaaacataacgt-A------------AAC-GG-AT-GTTATGCTAAAGCACTT-G-GAAGCAGATTTGCAC--CATGATGGTCA-AT-ATCTGAC-TCCATTTGTGCA-T-GCTC-CCAAACAAGACT-TCAAATATTT-TTTTATGGAAGCtgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaaaacggatgttatgctaaagcacttggaagcagatttgcaccatgatggtcaatatctgactccatttgtgcatgctcccaaacaagacttcaaatatttttttatggaagc
gi|7 : aacaaagctaaacataacgtattcttcaaatctcgagtaatgtcgacgaatttaaaagctttacaattgtcaacccttggatgaaaaattgaaaccaaactttatatcatataaaatattctcgaactggtttcccgccttttgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaTATGTA---G-------AACCATTGCTTC-----C----CTTGAT-CACCAAAATAGTCAATT
gi|8 : tatgaTCTTTCA-CCAACATCTACACGTAT-ATCA-GATAGAA-GCTTGTCTAAACGGTTTT-CCAC--CTTTTTCATCGACAA------------AAC-GGCATCGATCAGGAAAACcctctatcgaccagaaagtatttccttttattattattttttttcatttaaggaggcgtttgttcgacctcttctttaaaatcctggtcttgacaaagaagttttgaaaaactattgcccaatctccaatctttgttttgtttccaagactccggagaaagctgtgacaaatagaatggatagtcaccttga
gi|8 : -A------------AAC-GG-AT-GCTAAGCAAAACTACCA-G-GATGCAGA-ATATCCAATATGATCGTCC-AT-CTATAAC-GTcttgaaggaaaaaacggatgctaagcaaaactaccaggatgcagaatatccaatatgatcgtccatctataacgtagcatgccattgtac
gi|9 : tctttcaccaacatctacacgtatatcagatagaagcttgtctaaacggttttccacctttttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaTTTACTACCATAAGCAACA--CAGAGTA-GAAAAGATGTCTTT-CT-GAAGTTTTAAC-ACTG---CC-AATCAACGTGAAA-G--AAAACGATATagcatgccattgtac
blockSeqs : A AT TTT T T T T TAT C G . C C TTT T TCC A A . G . GC T A . AAA T A T CG A C T T A ACTTGCTCTTGTCT C A A GATA T G AC G A AA G G TTTGGGTTTTTTTTTCTTC T A AC A G AAA A TTCAAAAAA C C C GTAC A G T C TT TTCATCG A . A C C C A AA TT T T T C AT TC G C T A T . C TA TC C GC CAATAC AG
blockSeqs : A AT TTT . . T . . . G . . C TT . C A . . . . GC T . . ACG T . T . A C T . T TACTTGCTCTGTCT . G . GATA T C AA . . A . T CTTCT . A G . A AAA G AACCGAC A . C GTAC . . . . . TATCG . . . . . . . . T . T . C CG C . C . A T . G . CT G GA CATTA C
blockSeqs : T T TTT . . T . . . G . . . TT . . . . . GC A . . G T . T . A C T . T TACTCTCTGTCT . G . ATA T C AC . . T . T TTT . T C . A AAA G AATT A . C TACA . . . . . . . . . . . . . . A . T . C T C . C . A T . G . TC G G ATT A
blockSeqs : . A GAG . . A . . . . . . . . A . . . G . . . . G T . . T TACTTGCTT . G . T C C TC . . G . T TCT . T C . A . G AA A . C TTAT . . . . . . . . . . . . . . A . C . A T C . A . A T . G . T G G C T
blockSeqs : . . T . . . . . T A . . G . A TCT . T A . G . G AA C . C GTAT . . . . . . . . . . . . . . A . C . T T A . A . T . . C . T C G C C
blockSeqs : . . . . A . . TTT . A C . . . . AA T . . . . . . . . . . . . . . . . . C . A . . . G C .
blockSeqs : . . . . . T . C . . . . . . . . . .
blockSeqs : .
blockSeqCons : TTT ** ****************** GC **** AG*** TACTTGCTCTGTCT* ATA* G** AA************* GTAC* ******* ************ C** ** TC G**********
originalCons : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAA--G--GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
finalCons : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAACAA-CAA----ACATGGAAAG---GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCTGTCT-CAGCAAGGC-TAAAGAG-GAATA-TTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AAG--T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAAAA-------------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-ACC--CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATAG----------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTGGTCTTGACAAGACGCTTTTGAAAAGCTATCGTCAGTTTTCAATCTATCGTTTATTGCCAATCTGGAGAAAGTTGTGGCTAGTAGAATGGATCGTCACTCTTGATGGGATGCATTACCAAACAACATGC
Unaligned ( gi|15 ): CTTATAAAATCTGGTCTTGGCAAAGAGGATTTGGAAAACGTTTCGTCCAATCTACA
Unaligned ( gi|16 ): ATAGTCAACTCCTCTATCTAGCAAAAAGTATTTCCTTCTTTATT
Alignments
lowQualScore : 111 11 111 1 111 1 77777777777777 555555555555555555 1111 1 1 11 444444444444444 3333 111 333333333333333333333 111 333333333333333 11111 1 3333333 222222222222 11 33333333333 2222222222 11
lowQualScore : 6 44 777 8 8 1 8 444 8 3 0 0 11 8 6 000 0 666 3 3 88888888888888 8 999999999999999999 88 8 8 7777 0 0 0 6 0 8 0 11 3 3 5 6 7 000000000000000 6 3 6 5555 9 1 88 5 5 444 5 7 666666666666666666666 5 1 77 5 0 2 111 3 0 999999999999999 2 5 2 88888 5 5 5 1 77 8888888 5 222222222222 5 5 5 5 5 77 66 5 1 5 1 666 777 6 2 5 1 0 7 99 1 99 11 1 0 00000000000 6666666666 22
lowQualScore : . .. ... . . . . ... . . . . .. . . ... . ... . . .............. . .................. .. . . .... . . . . . . . .. . . . . . ............... . . . .... . . .. . . ... . . ..................... . . .. . . . ... . . ............... . . . ..... . . . . .. ....... . ............ . . . . . .. .. . . . . ... ... . . . . . . .. . .. .. . . ........... .......... ..
lowQualScore : 0 66 666 0 0 4 0 000 0 2 8 8 00 0 5 222 0 222 2 3 33333333333333 0 000000000000000000 22 8 0 0000 8 8 8 0 6 0 6 00 8 2 6 7 5 777777777777777 7 7 7 2222 8 7 33 0 0 222 0 6 666666666666666666666 0 0 55 0 8 3 000 0 1 111111111111111 8 0 5 11111 7 7 7 4 99 6666666 0 888888888888 0 0 0 7 7 99 77 7 0 7 0 888 555 7 5 7 7 1 3 22 0 22 00 0 7 00000000000 6666666666 33
consensus : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAAC-AACAA----ACATGGAAAG-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-A-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
Reference ( family-2095 ) : TTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCNAAAC-AACAA----ACATGGAAAG-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGGCTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GA-ATATTCTTTAAACTCTTCAAAACTCGAGGAATGTGG-AC-AA-G-T-TTNAAAGCTT--TCT----------------T-CANAATCATAAA-CCC-TTTGATAGAAAGGGAAA-------AA------AAAATCNTTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-GG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTACCC--TATGATGGCCN-AT-CTNTAAC-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATC--GANCC--TATTCCCACGTCTTCTTNTCGGGAAGTATATA---G-------AACCGTTGCTTC-----C----CTTAAT-CACCAGGATAGTCAACT
gi|1 : TTTACAACAAACAGCAACACCAAA---AGAAAGAAATGTTTTT-TA-AAATGTTTAAT-ATTT---TC-AATCAGGATGAGATGGAAGGA-TATATTCATGAGCTAT------GCGC-AT--CTGTTAGCACTAA-ATA
gi|1 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcaAACATACATG-TTCCACTTGTTTTAAAAACAATCATCATCAGATCAA-ACACAAGATGGTATTCGGACAATCTGA--TGGG--TACAAAAC-AACAACAAAACA-GGAAAGCGGAAAGAC--TGGCG-AAA--CAC--G-TTTGAAAT------------ATTTAAAACAGCATGTAA-AA--CCTAGGT------------------CAAGGC-TAAAAAG-GG--T-TTCT----ATCCTTCAAAATTTAAGGAATGTGG-AC-AATA-T-TTGAAAGTTT--GAA----------------T-CAACATCATAAA-CTC-TTTGATAAAAAA--AAA-------AACCCAGTAAAATCCTTTG-CCAACATCTACAT-------CA-GAAAAAA-TCTTGTCGAACCGG-TTTTCCAC--CTGTG------AC-ATCAATCTGAGAAAAC-GG-AT-GCTAAGCAAAACAACCC-G-GATGCAGATTTACCC--TACGATGGTTC-AT-CTATAAC-GTTTTTTCAGCA-T-GT-CACTGAACAAGATC-TCAAATCTAT-TATAATGAAAGCTCCCAGTGAATCAT---GATATCTCGACCC--TACTCCCACGTCT-CGTCTCAAGAAGTATATACATGTACATATAACCATTGCTCC-----C----CTTATT-CACCAGAAtgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgaacatacatgttccacttgttttaaaaacaatcatcatcagatcaaacacaagatggtattcggacaatctgatgggtacaaaacaacaacaaaacaggaaagcggaaagactggcgaaacacgtttgaaatatttaaaacagcatgtaaaacctaggtcaaggctaaaaagggtttctatccttcaaaatttaaggaatgtggacaatatttgaaagtttgaatcaacatcataaactctttgataaaaaaaaaaacccagtaaaatcctttgccaacatctacatcagaaaaaatcttgtcgaaccggttttccacctgtgacatcaatctgagaaaacggatgctaagcaaaacaacccggatgcagatttaccctacgatggttcatctataacgttttttcagcatgtcactgaacaagatctcaaatctattataatgaaagctcccagtgaatcatgatatctcgaccctactcccacgtctcgtctcaagaagtatatacatgtacatataaccattgctccccttattcaccagaa
gi|10 : ctcaccaccgcacgtacaaaaaccgtttctctgcgatgaaaaagggaacgcgaatgtgatcactatgtggtaaaagcttccctcatttacaacaaacagcaacaccaaaagaaagaaatgttttttaaaatgtttaatattttcaatcaggatgagatggaaggatatattcatgagctatgcgcatctgttagcactaaatatgcctcatagccggtgaatgaatttgttaaatcctacaacaaaggtctcgctgaatgAAA-AAAACCTAGGCTACTTGCTT-------AGTAAGGT-TAAAAAG-GA--T-TTCT----AGTCTTCAAAACTCGAGGATTGTGG-ACAAA-A-T-TTGAAAGTTT--TTTGGGTTTTTTTTTCTTCT-CAAAATCATAAA-GCC-TTTGA
gi|12 : aaaaaaaaaccTTACAACAA-CAGCAAC-TCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTATATTC-AACCAGGGTG-AATG--AAGA-GATAT-CATGAGCTATTT-AAATTGC-GT---TGTT-ACACTAACATA
gi|13 : TCTAT-CATTATGAAAGCTCCCAGCCTATCAT-GTGAACTC--GACCC--TCTTCCCACGTCTT-TTCTCAAGGTGTCTATA---G-------AACCATCGCTCC-----C----CTTATT-CACCACACTAGTCAACT
gi|14 : AATGTAG-AC-AA-AAT-TTTAAGGTTT--TTT----------------TTCCAAATCATAAA-CCC-TTTGATGG---GATAAA-------AACCGAC-AAAATTCTTTA-CCATCAcctctatc
gi|2 : TTTACAACAAACAG-AACATCCATTTTAGGAAGAAATATCTTTTCATGAAGGTTTTATTATTA---TCCAACCAGG-T-AAATG--AAGA-GATATCCATGAGCTATTTTAAATTGCTGCTCCTGTTAACACTAACATAAATGATTCCGCTTGTT--------------CATCAGACCAAGACG------------------ATCTGAGCTAGGGCTGC-AAAC-AACAA----ACATGGAAAAAGTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGT-ATTTAAAACAGCATGAAATAAATCTTAGAC-ACTTGCTCTTGTCTCAGCAAGGCCTAAAGAGAGA-ATATTCTTTAAACTCTTTAAA--TTGAGGAATGTGGGAC-AA-T-TGTTTAAAGCTTCTTCT----------------T-CATAATCATAAAACCC-TTTGTTAGAAAGGGAAA-------AA------AATATCATTTA-CCAA-ATCTACATGTAC-ATCAAGATAAAAGTCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCTCG-GATGCAGATTTACCC--TATAATGCCCTTATTCTTTAATTGTTGTTTCCGCAAT-AC-C-CTGAACAAAAGCGTCACGTCTATTCATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTTCTTGTCGGGAAATATATA---GC------AACCGTTGCTTCCAATAC----TTTAATAGACCAGGATAGTCAACT
gi|3 : aaccgtttctctgcgatgtattttgatcactatgcagaaaaaggctTTTACAACAAACAGCAACATCCATTTTAGGAAGAAATATCTTT-CA-GAAGGTTTTAT-ATTA---TC-AACCAGGGTGAAATG--AAGA-GATATCCATGAGCTATTT-AAATTGC-GT--CTGTTAACACTAACATAAATG-TTCCGCTTGTT--------------CATCAGACCAA-ACG------------------ATCTGAGCTAGGGCTGCTAAAC-AACAA----ACATGGAA-G-GTAAAGACGCTGGCG-AAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACTTGCTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAAA-TTGAGGAATGTGG-AC-AA-G-T-TTTAAAGCTT--TCT----------------T-CATAATCATAAA-CCC-TTTGTTAGAAAGGGGAA-------AA------AAAATCATTTA-CCAACATCTACATGTAC-ATCA-GATAAAA-TCTTGTCGAACCGG-TTT-CCAC--CTTT-------AC-A------------AAC-AA-AT-GCTAAGTAAAACTACCT-G-GATGCAGATTTACCC--TATAATGGCCT-AT-TTTTAAT-GTTGTTTCCGCA-T-AC-C-CTGAACAAAAGC-TCACGTCTAT-CATTATGAAAGCTCCCAGTAAATCATTGTGAAATT--GAGCC--TATTCCCACGTCTCTTTGTTAGAAAGGGGA-A---G-------AACCGTTGCTTC-----CATTACTTAAT-AACCAGGATAGTCAACTaccctaatgtgattataaggagtcacttataaaatctggtcttggcaaagag
gi|4 : -ACG------------------ATCTGAGCTAGGGCTGCTAAACAAACAA----ACATGG-AAG-GTAAAGACGCT-GCGAAAATGCAC--AACTTGAAATCCATCATCAGTTATTTAAAACAGCATGAAA-AAATCCTAGACTACT--CTCT-GTCTCAGCAAGGC-TAAAGAG-GAGATATTCTTTAAACTCTTTAAGAATTGAGGAATGTGG-AC-AA-G-T-TT-AAAGCTT--TCT----------------T-CATAATCATAAA--CC-TTTGTTAGAAAGGG--G-------AA------AAAATCATTTACCCCACATCTACAT-TACAATCA-GATAAAA-TCTTGTCGAACCGG-TTT-TCAC--CTTT-------AC-A------------AACAGA-AT-GCTAAGTAAAACTACCT-GAGATGCAGATTTA-CC--TATAATAGCTA-AT-TTTTAAT-GTTGTTTCCGC--T-AC-C-CTAA--AAAAGC-TCACGTCTAT-CATTATG-AAGCT-CCAGTAAATCATTGTGGAATT--GAGCCTATATTCCCA-GTCATCTTGTCGGGAAATATATA---GA------AACCGTTGCTTCAT---T----CTTAAT--ACCAGGATAGTCAACT
gi|5 : -ACG------------------ATCTGAA----GGCGGCAAAAC-AACAA----AAATGGAAAC-GGAAAGACGCTGGTG-AAA--CACCGAGCTTGAAATTCATCATCAGTTATTTTAAACAGCATGTAA-AAA-CCTAGGCT--------------CAGCAAGAC-TAAA-AG-GA-----TTTCTAA--TTTTCAAAACTCAAAGAATGTGG-A------------AAAGCTT--TTT----------------T-CAAAATCATAAA-ACCATTTGATGG---GGGAAATTCAAAAAA------GAAATCCTTTA-CCAGCATCTACAT-------CG-GATAAAA-TCTTGTCGAACCGG-TTT-CCACTTCTTTTATCG--AC-A------------AAaccctatgtgtatataaggagtcacttataaaatctggtcttggcaaagaggatttggaaaactgtcgtcaatctccaatattttgtttccaagattctggtgaaatttgta
gi|5 : c------------AAC-AG-AT-GCTAAGCAAAACTACCT-G-GATGCAGATTTGCCC--TATGATGGTCA-AT-CTCTAAC-GTTGTTTCAGCA-CGAC-A-TTGGACAAAGGC-TCAAATCTAT-C---GTGAAAGCTCCCTGTAAATCA-TGTAAAGTC--GACCC--TATTCCCACGTCTT-TTCTTAATAATTCTATA---G-------AACCATTTCTTC-----C----CTTTAT-TACCAGAATAATCAACTgtgacatcgatcagggaaaccttgaagcaaacaacagatgctaagcaaaactacctggatgcagatttgccctatgatggtcaatctctaacgttgtttcagcacgacattggacaaaggctcaaatctatcgtgaaagctccctgtaaatcatgtaaagtcgaccctattcccacgtcttttcttaataattctatagaaccatttcttccctttattaccagaataatcaactccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : cacgatctgaaggcggcaaaacaacaaaaatggaaacggaaagacgctggtgaaacaccgagcttgaaattcatcatcagttattttaaacagcatgtaaaaacctaggctcagcaagactaaaaggatttctaattttcaaaactcaaagaatgtggaaaagcttttttcaaaatcataaaaccatttgatgggggaaattcaaaaaagaaatcctttaccagcatctacatcggataaaatcttgtcgaaccggtttccacttcttttatcgacaaagtgacatcgatcagggaaaccttgaagcaaacATTCTTCAAATCTCGAGTAATGTCG-AC-GA-A-T-TTAAAAGCTT--T---------------------ACAATTGTCAA-CCC-TTGGAT-------GAAA-------AATT----GAA-------A-CCAA-----AC-TTTAT-ATCA-TATAAAA-TATTCTCGAACTGG-TTTCCCGC--CTTT-------ccatcgaccagaaggtctttccttccttatttaaggaggcacttggttggcctttaaaaaccttgtcttcgcagagagg
gi|6 : aacaaagctaaacataacgt-A------------AAC-GG-AT-GTTATGCTAAAGCACTT-G-GAAGCAGATTTGCAC--CATGATGGTCA-AT-ATCTGAC-TCCATTTGTGCA-T-GCTC-CCAAACAAGACT-TCAAATATTT-TTTTATGGAAGCtgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaaaacggatgttatgctaaagcacttggaagcagatttgcaccatgatggtcaatatctgactccatttgtgcatgctcccaaacaagacttcaaatatttttttatggaagc
gi|7 : aacaaagctaaacataacgtattcttcaaatctcgagtaatgtcgacgaatttaaaagctttacaattgtcaacccttggatgaaaaattgaaaccaaactttatatcatataaaatattctcgaactggtttcccgccttttgtcatggacattgtgacatcgatcagtgaaactttgaagtgaaTATGTA---G-------AACCATTGCTTC-----C----CTTGAT-CACCAAAATAGTCAATT
gi|8 : tatgaTCTTTCA-CCAACATCTACACGTAT-ATCA-GATAGAA-GCTTGTCTAAACGGTTTT-CCAC--CTTTTTCATCGACAA------------AAC-GGCATCGATCAGGAAAACcctctatcgaccagaaagtatttccttttattattattttttttcatttaaggaggcgtttgttcgacctcttctttaaaatcctggtcttgacaaagaagttttgaaaaactattgcccaatctccaatctttgttttgtttccaagactccggagaaagctgtgacaaatagaatggatagtcaccttga
gi|8 : -A------------AAC-GG-AT-GCTAAGCAAAACTACCA-G-GATGCAGA-ATATCCAATATGATCGTCC-AT-CTATAAC-GTcttgaaggaaaaaacggatgctaagcaaaactaccaggatgcagaatatccaatatgatcgtccatctataacgtagcatgccattgtac
gi|9 : tctttcaccaacatctacacgtatatcagatagaagcttgtctaaacggttttccacctttttcatcgacaaaacggcatcgatcaggaaaaccttgaaggaaaTTTACTACCATAAGCAACA--CAGAGTA-GAAAAGATGTCTTT-CT-GAAGTTTTAAC-ACTG---CC-AATCAACGTGAAA-G--AAAACGATATagcatgccattgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTGGTCTTGACAAGACGCTTTTGAAAAGCTATCGTCAGTTTTCAATCTATCGTTTATTGCCAATCTGGAGAAAGTTGTGGCTAGTAGAATGGATCGTCACTCTTGATGGGATGCATTACCAAACAACATGC
Unaligned ( gi|15 ): CTTATAAAATCTGGTCTTGGCAAAGAGGATTTGGAAAACGTTTCGTCCAATCTACA
Unaligned ( gi|16 ): ATAGTCAACTCCTCTATCTAGCAAAAAGTATTTCCTTCTTTATT