lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111 1111111111111111111111 2222222222222222222222222222222222
lowQualScore : 1 111111111111 333333 666666666666666666666666666666666666666 2222222 3333 111 22222222 111 44444444444 4444444444444 222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 4 1111111 1 1 999999999999999999999 22 333333333333333333 1 22 222222222222222222222222222222222222 11 11 2222 2222 33333 9999999999999999999999999999999999999999 0000000000000000000000 222 1 1 33 222 11 111111 111 111 555555555555555555 22222222 22222222 111 1111 2222222 3333333333333333333333333333333333 1 1 11 1
lowQualScore : 4 7 777 8 2 55 7777 5 2 777777777777 1 22 66 1 999999 5 5 000000000000000000000000000000000000000 1 2 5 2222222 44 1 5 0 5 2222 1 9999 555 33333333 666 5 0 999 111 5 55555555555 5 6666666666666 000000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 0 0 5555555 3 6 0 5 3 888888888888888888888 33 333333333333333333 0 55 2 444444444444444444444444444444444444 2 33 33 1111 1111 66666 3 0 3333333333333333333333333333333333333333 4444444444444444444444 333 6 3 888 3 6 11 222 6 6 33 555555 4 3 0 444 3 222 111111111111111111 66666666 88888888 6 2 8 444 7777 0 8 8 7777777 3333333333333333333333333333333333 0 0 33 0 0 3
lowQualScore : . . ... . . .. .... . . ............ . .. .. . ...... . . ....................................... . . . ....... .. . . . . .... . .... ... ........ ... . . ... ... . ........... . ............. ...... ................................................................................................................. . . . ....... . . . . . ..................... .. .................. . .. . .................................... . .. .. .... .... ..... . . ........................................ ...................... ... . . ... . . .. ... . . .. ...... . . . ... . ... .................. ........ ........ . . . ... .... . . . ....... .................................. . . .. . . .
lowQualScore : 0 5 000 9 6 00 2222 0 6 888888888888 4 77 00 4 999999 7 7 444444444444444444444444444444444444444 0 5 0 0000000 11 6 0 1 7 3333 7 0000 666 66666666 777 7 4 666 666 0 66666666666 7 8888888888888 000000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 0 7777777 3 0 7 0 7 777777777777777777777 88 555555555555555555 0 22 0 222222222222222222222222222222222222 5 88 88 2222 2222 00000 2 2 8888888888888888888888888888888888888888 3333333333333333333333 333 7 3 777 3 7 77 555 0 7 88 888888 5 2 8 222 2 444 888888888888888888 44444444 88888888 7 2 0 000 0000 8 0 0 0000000 0000000000000000000000000000000000 0 0 88 0 2 2
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG---CG-TGCTNATCGATGGGGTCCTA--A-GCNTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AAGCTTACG-GTAC-CAAA-AT-T-TTNTATGT-TCCGAATT-----TT-AACA-A--TTGTGT-CATAANT----CTAATCATAAC-AAGGTTT-AGTTTAGT-AGAT-TTTAT-GGAGAAA---A--CTTCTT-AGAA-TGCAC-A-TTTCGTC-A-ATTTGA-A-GT-GAT-AGGGAAGGGG-GGGGGGGTATTGAC----C-AAATTTGATG-TTTATAATTCTGT-C---T--C--CAAGTT-----TATAAT------------------T-----AATACCAATAATTTCAGG----AGTAATTTG-AAGAAAAAAA-------AT--------ATATTTAAAAATTAAAATCACA-TGAAAANNAACGGGAACATTGTTTTTCCAA-CAAAAG-AGGGNGGGGGGG---GGGGG-G-GC-GNTTCTAATGTTC-AAAA---TTCTTG-----AC--AAG-CAAANAAGAAAC----------A-----------------AAC-----AAATNT--CAAA--GC----TCTA----AATAC---TAAATCGTGTGTGT----GTGGNGCTGTGTGGTTGGGGGGGGGGGNNCTCCA-GATTTAAATCAT----CGTTCCTCGAATTTTAC-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAAC-CTATAAGGNCAAAGCTGATTTACGCAAAATT--TATTTT--A-A-AACATTAAATCATA-C-GTGAGT--GAG-A---TA-T---------ATGTTCCGTTTA--TT--GAC-------ACC-CGANG-TA---CA----CATGTTTT-CGTC-AGC---A---GTGCGAAATGATTACATGTG-----AC--G-AA--GTACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( gi|1 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG---CG-TGCTAATCGATGGGGTCCTA--A-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGTAAAGCTTACG-GTAC-TAAA-ACAT-TTATATAT-TCCGAATG-----TT-CACATA--TTGTAT-CATAACT----CTAATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCAT-ATAGAAA---A--TTTCTT-AAAA-TGCAC-A-TTTCGTC-A-ATTTGA-A-GT-GAT-AGGGAAGGGG-GGGGGGG--GTGGC----C-AAATTTGATG-TTTATAATTCTG---------C--CAA--------CATAAT------------------T-----AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAATAGACATTTAAAAA-TAAAATCACATTGAAAACAAACGGGAACATTTTTTTTTCAA-CAGAGGGAGGGGGGGGGGGCGGGGGGGGGGGCGGGTTCTAATGTT--AAAA---TTCCTG-----AC--AAG-CAATCAAGAAGC----------G-----------------AAC-----AAATCT--CAAA--GC----TCTA----AATAG---TAAATCGTGTGTGT----GTGAAG----GTGGTTGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------C-AATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAA--CTATAA-ATCAAAACTGATGTACACAAAATT--TATTTT--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----TA-T---------ATGTTCCGTTTA--TT--GAC-------GCC-CGATG-TA---CA----CATGTTTT-CGTC-AGC---A---GTGTGAATTGATTACGTGTGTATGTACATGTAACTGTACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG---CG-TGCTAATCGATGGGGTCCTA--A-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AAGCTTACG-GTAC-TAAA-
gi|25 : ATTCATTTTTGCAGTTACTGCC
gi|4 : atggcTTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT---TG-TGCTTACTGATTGGGTCCTA--A-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTAT-----AGTAAAGCTTACA-GTAC-CAAA-A-----TCTGTAT-T---AAT------TT-C----A--TT-----------T----CTGTTTATAA-----GTTT-A------TAAGAT-ATCAT-GGAGAAC---A--CTTTTTAAAAA-TGTAC-T-TTTTGTC-ATGTTTGA----------AGGGAAGGGA-GGGAGGGTATTGAC----A-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTC--CAAGTTAAAGGTATGAT------------------TTTTAAGATACCAATAATTTCAG
gi|3 : TCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGG-GGAAACG-TGCTAATCGAATGGGTCCTA--A-GCATCAGATAAAA---TAGAAACAAATAGAGTATTGTAAA------CTTACGCGTACATAAA-ACAT-TATTATGT-TCCGAATT-----TA-AAGATA--TAGTAT-CATAACTACTATTAATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTAT-GGAGAAA---A---ATCAT-AGAA-TTCACTATTTTCGTC-A-A-TTGATA-GT-GAT-AGGAATGGGGAGGGGGGA--GGGGCGGGGC-AAATTTGATGTTTTATAATTCT----------C--CAA--------TATAAT------------------T-----AATA-CAAGAATTTCAGGAATCAGTAATTT----GAAAAAAA-------AT--------ATATTTAAAAATTAAAATCACA-TGAAAAcctgaaaataaaatcatgttacagtgataatatgaattaacattgtttttcgaagaggggggg
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG---CGCTG-TAGTCAGTGTGATCCTT--A-CCTTCACAT-ACA---TAGTAaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG---CG-TGGTAATCGATTGGGT-CTA--ATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AAGCTTACG-GCAC-CAAA-ATCTCTTTTATGT-TCTG-ACG-----TT-TA-ATAAGTTGTGT-CTTATAT----CTAATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTAT-GGAGAAA---A--CTTTTT-AGAA-TGTAC-A-TTTCGTC-A-A------------AT--GGAAAGGGC-GGGGGTA--TTAAC----C-AATTTTGATG-TTT-TAATTCTGTACAAGT--T--TAA--------TATAAT------------------T-----AATAC--ATAATTTAAG------GTAA-TTGGAAAAAActggaaagatacttatgatacataacaaacaatt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG---CG-TGCTAATCG----------------CATCAGATAAAA---TAGTAACAAATAG----TTGT------AAGCTTACG-GT---TAGACATGT-TTAATTATGTCCGAATT-----TTAAACAGA--TTATATGCATAACT----ATAATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGA--AATCAT-AGAATTGCAC-A-TTTCGTCAA-ATTTGA-ATGTGGATAAGGGAAGGGG-GGGGgtacttaaatgggatcaacctgtaaataaat
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG---CGTTGCTTATTGATGCGGTCC----A-GTGT------------TAATAACAAAT---AT-CTGTAGAGT-CAGCTTATT-GTAC-CAAA-AT-T-CTTTA-AT-TGTGGCTGCGTCTTT-AACA-G--TTGTGT-CATA
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG---CA-TTCTTATTGATtatctgtataaaacaaaacaaaaataa
gi|9 : atTTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG---CG-TGCTTATTGATGCGGTCCTAGTA-GTAT---------------TAACA-----AATACTGTAGAGTCAAGCTTATT-GTAC-CAAA-TTCT-TTA-ATGT-GCTGCGTT-----TT-AACAGG--TTGTGT-CATATAT----CTGTTAAAAAC-AAactatcccaa
gi|24 : aTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG---aacaaaataaggatatagtcaaactgattattaaaatagatga
gi|11 : -CATA-------CTAATCAGAAC-AAGGTTT-AGTTT------AT-T-----ATA------------TCTT---------------TTCGTCAA-ATTTAA-A-GG-AAT-GGGGAAAGGA-GGGAGGGTATTGAC----CAAAATTTGCTG--TTA-AATTCT----------CTTCAAGTT-----CATAATACATTAAATTTATACAAAC-----AATACAAATAAGTTCAGG----AGTAATTTGTAAtcct
gi|19 : c-CATAATT----TT--TTAGAAC-A---TTT-TATTT--T-ATAT-CTTAT-ACAAAAA---ACTTTTTTT-AAAA-TATAT-A-TTTC------ATTTTA-A-AT-GGC--GGGAAGGGG-AGGGGG
gi|22 : -AAGGTTT-AGTTTGGT-AGAT-TTTAT-GGAGAAA---A--TTTCTT-AGCA-TGCAT-A-TTTCGTC-A-ATTTGA-A-G------------GGGG-GGGG
gi|2 : tAACCGGAACATTGTTTTTCAAA-GAAAAAGAGGGGGG--------GGGGGGGAGC--ATTCTAATGTTC-AAAA---TTCTTG-----AC--AAG-CAAACAAGAAAC----------ATTTAACAAATACAGTATGAC-----AAATCT--CAAAACGC----TCTA----AATTC---TAAATCGCGTGTGTATACGTGGTGCTGTGTGG--GGGGGGGGGGGGGCTCCA--ATTTAAATCAT-----GTTCCTTGAATTTTAC-AATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGG-AAACCCTATAAGATCAA
gi|14 : AATGGGAACATTGTTAT--CAAACAAAAGTAGGACGGGGGGA---GGGGGCGCACGGTTTCTAATGTT--AAAA----TCTTG-----A---AAGTCAA-AAAAAAGA----------A-----------------AACTAACAAAATAT--AAAA--CCAATATCTAAAACAATAGCTCTAAATCATtttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|8 : tGGGGGCATTGGTTATTCAA-CAAAGG-AGGGAAAGGGGGT---------------CTCTAATGTT--AAAAAATTTCTTGAAAAAACAAAAG-CAAAAAAGAAACAAACAAATATA-----------------AAC-----AAATCT--CAAA--GC----TCTA----AAT-----TA-----TGTGTGT----G-GGAG----GT-GTTGG-----GGGGTCCTT---GATTTAAATCAT----CGTTCCTC--------CAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAA--C
gi|20 : GGTTCTAATGTTCGAAAA---TTATTC-----AC--AAT-TAAACAAGAAAC----------A-----------------AGC-----AAATATAACAAA--GC----TCTA----AATAC---TAAATCGTGTGTGT----c
gi|6 : -AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAAC-CTATAA-GACAAAGCTGGTGCTCATAAAa
gi|2 : TGATTTACGCAAAATTAGTTTTTT--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--TA-T---------ATGTT-CGTCTAT-TT--GAC-------ACC-CGATtaaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|12 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagtGATTTACACAAAATT--TATTTT--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----TA-T---------ATGTTCCGTTTA--TTG-GACCCGGGGGGCC-CGAAG-TA---CA----CATGTTTT-CGCC-AGC---AAAGGTGCAAA-TAATCACATGTG-----AC----AACTGTAAACGTGCATTTTGT-CGCCAACATTGT-ATTTca
gi|13 : CAAAATT--TATTTTTAA-A-AACATTAA-TCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTTT----T--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGA--GATTA-------AT-TACATG-----GTAC--GTGCA-TTTGTCCGC--ACA-TCTA
gi|15 : ttatAATT--AATTTT--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGGA-TTAAGAGAAAAGGTTCCGTT-AGGTT--GAC-------ACC-CAAAG-TATGACAATTGCATGTTTG--GTC-AGC---A---ATGTGAAATGtt
gi|18 : ATCATA-CCGTGA-T--AAG-----TA-T---------ATGTTCCGTTTA--TTTGGAC-------ACCTCGATG-TA---CA----CATGTTTTCCGTCAAGCA--A---GTGTGAA----------------------ATAA---TACA-ATGCA-TTTGT-CGC--ACC-TATA
gi|21 : tagt-CGATG-TA---CA----C--GTTTT-CGTC-AGCGCTA---GTGTGAAATAATTATATGTG--------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTT
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 111 111 22222222222222 11 222 1111111 11111 1111 11 4444444444444444 77777777777777777777777777777777777777777777777777777 222222 22222 77777777777777777777 1111 11 1 1 11 44444444444444444444 22 111 22222 1111 111 55555555555555555 222 11111111 1111 1111 2222 3333333333 33333 2222 66666666 111 1 1 222 11 11 111 55555555555555555 1111 2222222 111 1111 2222222 2222222222222222222222 11
lowQualScore : 3 55 8 1 22 4 1 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77777777777777 00 0 1 5 5 333 0 4 3333333 11111 2 4 5 2222 0 5 77 999999 11 5 777 5 5 88 4444444444444444 99 8 88 777 0 88888888888888888888888888888888888888888888888888888 5 0 777777 99999 00000000000000000000 3 0000 1 22 0 9 222 0 5 1 0 66 1 55555555555555555555 33 111 00000 4444 1 444 66666666666666666 8 1 555 88888888 7777 5555 1111 7 1 6666666666 22 11111 6 8888 44444444 777 2 0 3 0 2 555 0 11 11 8 8 1 0 000 1 66666666666666666 0000 99 6 1111111 5 1 6 111 4444 6 6 1111111 77 6 0 0 0 7777777777777777777777 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .............. .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... . . .. ................ .. . .. ... . ..................................................... . . ...... ..... .................... . .... . .. . . ... . . . . .. . .................... .. ... ..... .... . ... ................. . . ... ........ .... .... .... . . .......... .. ..... . .... ........ ... . . . . . ... . .. .. . . . . ... . ................. .... .. . ....... . . . ... .... . . ....... .. . . . . ...................... . . .. . .
lowQualScore : 6 00 0 0 22 4 0 9 00 8 666 1 66 1 5 888 0 0 0 0 0 33333333333333 66 4 3 7 7 999 4 4 4444444 11111 1 0 0 8888 2 0 55 555555 99 0 222 0 0 22 2222222222222222 44 0 88 222 8 44444444444444444444444444444444444444444444444444444 0 6 666666 88888 88888888888888888888 2 2222 2 55 0 8 888 2 6 4 0 88 0 55555555555555555555 00 888 00000 0000 0 000 00000000000000000 0 0 000 00000000 0000 4444 2222 3 0 3333333333 00 77777 7 3333 33333333 555 5 0 2 0 5 000 7 00 00 0 0 4 8 222 0 22222222222222222 0000 22 7 7777777 7 0 7 777 2222 7 7 0000000 33 7 7 8 8 6666666666666666666666 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--T-CTT--TTA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAGTT-AA--TATAAT------------------T-----AATACCAATAATTTCAGG----AGTAATTTG-AGGAAAAAAA-------------AT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTTTTCNAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA-----------------AAC-AAATATAA-CAAA--GC----TCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTGTGGT-GGGGGGGGGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC-A------CAATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGGTCAAAGCTGATTTACGCAAAATT--TATTTT--A-A-AACATTAAATCATA-C-GTGAGTGAG-----TAT---------ATGTTCCGTT-TA-TT--G-AC-------GCC-CGANG-TA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-------A---AACTGTA-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTNATCGATGGGGTCCTAA-GCNTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--T-TTT--NTA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATAANT----CT-----AATCATAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAGTT-----TATAAT------------------T-----AATACCAATAATTTCAGG----AGTAATTTG-AAGAAAAAAA-------------AT-A--TATTTAAAAATTAAAATC-ACAT-GAAAANNAACGGGAACATTGTTTTTCCAACAAAAG-AGGGNGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAANAA---GAAACA-----------------AAC-AAATNT---CAAA--GC----TCTA----AATA---CTAAATCGTGTGTGT----GTGGNGCTGTGTGGTTGGGGGGGGGGGNNCTCCAG-ATTTAAATCATCGT----TCCTCGAATTTTACAATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGGNCAAAGCTGATTTACGCAAAATT--TATTTT--A-A-AACATTAAATCATA-C-GTGAGTGAGA----TAT---------ATGTTCCGTT-TA-TT--G-AC-------ACC-CGANG-TA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TGATTACATGTG-------ACG-AA--GTACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATTT--ATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGG--TGGCC-AAATTTGATG-TTTATAATTCTG---------CCAA--------CATAAT------------------T-----AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTTTTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGG-GC---GGGTTCTAATGTT--AAAA--TTCCTGA-----CAA--G-CAATCAA---GAAGCG-----------------AAC-AAATCT---CAAA--GC----TCTA----AATA---GTAAATCGTGTGTGT----GTGAAG----GTGGTTGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------CAATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAAA-TCAAAACTGATGTACACAAAATT--TATTTT--A-A-AATATTAAATCATA-C-GTGAGTGAG-----TAT---------ATGTTCCGTT-TA-TT--G-AC-------GCC-CGATG-TA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGTGTGTATGTACATGTAACTGTACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--T-TCT--TTAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATTTAA-A-GG-AAT-G-----GGGAAAGGAGGGAGGGTATTGACCAAAATTTGCTG--TTA-AATTC--TC------TTCAAGTT-----CATAATACATTAAATTTATACAAAC-----AATACAAATAAGTTCAGG----AGTAATTTG-aaataa
gi|12 : cGATTTACACAAAATT--TATTTT--A-A-AATAT--AATCATA-A-GTGAGTAAG-----TAT---------ATGTTCCGTT-TA-TT--GGACCCGGGGGGCC-CGAAG-TA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACATGTG-------AC--AACTGTAAACGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTTTTAA-A-AACATTAA-TCGTATC-GTGAAACAGT----AAT---------ATGTTCCGTT-T---T--G-AC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATG-----------------GT--ACGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TTATCAAACAAAAGTAGGACGGGGGGA-----GGGGGC-GCACGGT-TTCTAATGTT--AAAA---TCTTGA------AA--GTCAAAAAAAAGAAAACT-----------------AACAAAATAT---AAAA--CCAATATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTTT--ATATAAGATTAAATCACA-T-GTGAGTGAGAAAAGGATTAAGAGAAAAGGTTCCGTTAGG-TT--G-AC-------ACC-CAAAG-TATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-TG
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-TAAG-----TAT---------ATGTTCCGTT-TA-TTTGG-AC-------ACCTCGATG-TA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA-------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TTTTA-A-AT-GGC-------GGGAAGGGGAGGGGG
gi|2 : AACCGGAACATTGTTTTTCAAAGAAAAA----GAGGGGGGG-----GGGGGGAGC----A-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAACAAATACAGTATGAC-AAATCT---CAAAACGC----TCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTGTGG--GGGGGGGGGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTACAATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCAA
gi|2 : AGTTGATTTACGCAAAATTAGTTTTTT--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTATTAT---------ATGTT-CGTC-TATTT--G-AC-------ACC-CGAtttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagat---GG-TTCTAATGTTCGAAAA--TTATTCA-----CAA--T-TAAACAA---GAAACA-----------------AGC-AAATATAA-CAAA--GC----TCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGATG-TA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATATGTG--------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TTTGA-A-G-----------------GGGGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--TTA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A--TTGATA-GT-GAT-AGGAATGGGGAGGGGGGAGGGGCG--GGGC-AAATTTGATGTTTTATAAT----TC------TCCAA--------TATAAT------------------T-----AATA-CAAGAATTTCAGGAATCAGTAATTT----GAAAAAAA-------------AT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--T-C---------TGT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTTA-AAAA-TGTAC-T-TTTTGTC-ATG-TTTGA----------A-----GGGAAGGGAGGGAGGGTATTGACA-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTCCAAGTTAAAGGTATGAT------------------TTTTAAGATACCAATAATTTCAG----------CCTG-A--AAATAAA-------------ATCA--TGTT--ACAGTGATAAT----AT-G--AATT------AACATTGTTTTTC-----GAAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCT-CTT--TTA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-A-A-------------AT--------GGAA-AGGGCGGGGGTATTAACC-AATTTTGATG-TTT-TAATTCTG--------TACAAGTTTAA--TATAAT------------------T-----AATAC--ATAATTTAAG------GTAATT----GGAAAAAA-----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAA-GACAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAATTA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TTTGA-ATGTGGATAA-----GGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTCAACAAAGG-AGGGAAAGGGGG------------------T-CTCTAATGTTA-AAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA-----------------AAC-AAATATAAACAAA--TC----TCAA----AGCT---CTAAATTATGTGTGT----G-GGAG--GTGT--T------GGGGGGTCCTT--G-ATTTAAATCATCGT----TCCTCCA-------AATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--T-CTT--TAA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 111 111 111111111 11 222 1111111 11111 1111 1 44444444444444 66666666666666666666666666666666666666666666666 222222 2222222 6666666666666666666 1111 11 1 11 44444444444444444444 22 111 22222 1111 111 111 22222 11111 333333333 1111 1111 2222 11 2222 1 3333 2222 4444444444 111 1 1 22 1 1111 11 222222222222222222 1111 11 22222222 111 1111 2222222 11111111111111111111111 11
lowQualScore : 3 55 8 1 22 4 5 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77 3 666666666 00 0 1 5 5 333 0 4 2222222 11111 1 4 5 2222 0 5 77 999999 66 0 777 5 5 88 5 22222222222222 99 8 88 777 0 66666666666666666666666666666666666666666666666 5 0 777777 8888888 7777777777777777777 3 0000 1 22 0 9 7 0 5 1 11 66 1 55555555555555555555 33 111 00000 4444 444 444 8 00000 88888 222222222 7777 5555 1111 7 88 8888 5 1111 6 8888 5555555555 777 2 0 3 0 2 44 7 00 0 99 6 0000 6 7 44 0 777 77 999999999999999999 4444 55 22222222 5 66 111 4444 6 6 1111111 77 6 0 0 22222222222222222222222 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .. . ......... .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... . . .. . .............. .. . .. ... . ............................................... . . ...... ....... ................... . .... . .. . . . . . . .. .. . .................... .. ... ..... .... ... ... . ..... ..... ......... .... .... .... . .. .... . .... . .... .......... ... . . . . . .. . .. . .. . .... . . .. . ... .. .................. .... .. ........ . .. ... .... . . ....... .. . . . ....................... . . .. . .
lowQualScore : 6 00 0 4 22 4 4 9 00 8 666 1 66 1 5 888 0 0 0 0 0 99 0 333333333 66 4 3 7 7 999 4 4 6666666 11111 0 0 0 8888 2 0 55 555555 99 0 222 0 0 22 0 11111111111111 44 0 88 222 8 88888888888888888888888888888888888888888888888 0 6 666666 8888888 0000000000000000000 2 2222 2 55 0 8 3 2 6 4 88 88 4 55555555555555555555 00 888 00000 0000 000 000 0 00000 66666 000000000 0000 4444 2222 3 33 0000 0 0000 7 3333 0000000000 555 5 0 2 0 5 77 3 55 5 22 7 8888 7 8 55 1 333 99 333333333333333333 0000 88 33333333 7 77 777 2222 7 7 0000000 33 7 8 8 88888888888888888888888 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TAT----AATTT-TA-----AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTTTTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAA-----TAT--AA-CAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTGTG-TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCC-------TC-CAATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TCTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TAT----AATT---------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTTTTCNAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAA-----TAT--AA-CAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTGTGGTGGGGGGGGGGGTCCTTCAG-ATTTAAATCATCGT----TCC-------TCACAATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGGTCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATT---TATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGG--TGGCC-AAATTTGATG-TTTATAATTCTGCC------------------AA---CAT----AATT---------AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTTTTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGG-GC---GGGTTCTAATGTT--AAAA--TTCCTGA-----CAA--G-CAATCAA---GAAGCG---AAC-AAA-----TCT-----CAAA---------GCTCTA----AATA---GTAAATCGTGTGTGT----GTGAAG--GTG-GTTGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCC-------TC-CAATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAAA-TCAAAACTGATGTACACAAAATT--TATTT-T--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-TGTA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGTGTGTATGTACATGTAACTGT-ACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--TTCT---T-TAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATTTAA-A-GG-AAT-G-----GGGAAAGGAGGGAGGGTATTGACCAAAATTTGCTG--TTA-AATTC--TC------TTCAAG-TTCATAA---TACATTAAATTTATACAAACAATACAAATAAGTTCAGG----AGTAATTTG--aaataa
gi|12 : cGATTTACACAAAATT--TATTT-T--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----T-AT---------ATGTTCCGTT-TA-TTG-GACCCGGGGGGCC-CGA-AGTA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACATGTG-AC--------AACTGTAA-ACGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTT-TTAA-A-AACATT-AATCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTT----TT--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATG-----------------GT---ACGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TTATCAAACAAAAGTAGGACGGGGGGA-----GGGGGC-GCACGGT-TTCTAATGTT--AAAA---TCTTGA------AA--GTCAAAAAAAAGAAAACT---AACAAAA-----TATAAAA-CCAA---------TATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTT-T--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGG-ATTAAGAGAAAAGGTTCCGTTAGG-TT--GAC-------ACC-CAA-AGTATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-T
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-g
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-T--AAG-----T-AT---------ATGTTCCGTT-TA-TTTGGAC-------ACCTCGA-TGTA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA--------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TTTTA-A-AT-GGC-------GGGAAGGGGAGGGGG
gi|2 : AACCGGAACATTGTTTTTCAAAGAAAAA----GAGGGGGGG-----GGGGGGAGC----A-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAAC-AAATACAGTAT--GA-CAAATCTCAAAACGCTCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTGTGG-GGGGGGGGGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTACAATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCA------ATTTAC------TT--TGCTTGT--C-A-AA-AT--AACCA-A-C-TTTGGT--GAT-----T-AT---------AT
gi|2 : AGTTGATTTACGCAAAATTAGTTTTT-T--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--T-AT---------ATGTT-CGTC-TATTT--GAC-------ACC-CGA-agaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagat---GG-TTCTAATGTTCGAAAA--TTATTCA-----CAA--T-TAAACAA---GAAACA---AGC-AAA-----TAT--AA-CAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGA-TGTA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATATGTG---------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TTTGA-A-G-----------------GGGGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--T-TA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A--TTGATA-GT-GAT-AGGAATGGGGAGGGGGGAGGGGCG--GGGC-AAATTTGATGTTTTATAAT----TC------TCC---------AA---TAT----AATT---------AATA-CAAGAATTTCAGGAATCAGTAATTT-----GAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--TCT-----------GT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTT--AAAAATGTAC-T-TTTTGTC-ATG-TTTGA-A-G-------------GGAAGGGAGGGAGGGTATTGACA-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTCCAAG-T---TAAAGGTAT----GATTTTTAA----GATACCAATAATTTCAG----------CCTG--A--AAATAA------------AATCA--TGTT--ACAGTGATAAT----AT-G--AAT------TAACATTGTTTTTCG-----AAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCTCTT---T-TA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-A-A-------------AT--------GGAA-AGGGCGGGGGTATTAACC-AATTTTGATG-TTT-TAATTCTG--------TACAAGTT---TAA---TAT----AATT---------AATAC--ATAATTTAAG------GTAATT-----GGAAAAAA----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAAGA-CAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAAT-TA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TTTGA-ATGTGGATAA-----GGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTCAACAAAGG-AGGGAAAGGGGG------------------T-CTCTAATGTTA-AAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA---AAC-AAA-----TAT--AAACAAA---------TCTCAA----AGCT---CTAAATTATGTGTGT----G-GGAG--GTGT--TGGGGGG-----TCCTT--G-ATTTAAATCATCGT----TCC-------TCCAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--TCTT---T-AA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 111 111 111111111 11 222 1111111 11111 1111 1 44444444444444 8888888888888888888888888888888888888888888888888 222222 2222222 6666666666666666666 1111 11 1 11 11 44444444444444444444 22 111 22222 1111 111 111 22222 222 333333333 1111 1111 2222 333333 1 3333 2222 44444444 1 111 1 1 1111 1 1111 11 222222222222222222 1111 11 22222222 111 1111 2222222 11111111111111111111111 11
lowQualScore : 3 55 8 1 22 4 5 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77 1 666666666 00 0 1 5 5 333 0 4 2222222 11111 1 4 5 2222 0 5 77 999999 66 0 777 5 5 88 5 22222222222222 99 8 88 777 0 2222222222222222222222222222222222222222222222222 5 0 777777 8888888 7777777777777777777 3 0000 1 22 0 9 7 0 5 8 22 66 1 55555555555555555555 33 111 00000 4444 444 444 8 00000 222 222222222 7777 5555 1111 7 666666 3 1111 6 8888 88888888 0 777 2 0 3 0 2 2 2222 00 0 99 6 0000 6 7 44 0 777 77 999999999999999999 4444 55 22222222 5 66 111 4444 6 6 1111111 77 6 0 0 22222222222222222222222 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .. . ......... .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... . . .. . .............. .. . .. ... . ................................................. . . ...... ....... ................... . .... . .. . . . . . . .. .. . .................... .. ... ..... .... ... ... . ..... ... ......... .... .... .... . ...... . .... . .... ........ . ... . . . . . . .... .. . .. . .... . . .. . ... .. .................. .... .. ........ . .. ... .... . . ....... .. . . . ....................... . . .. . .
lowQualScore : 6 00 0 4 22 4 4 9 00 8 666 1 66 1 5 888 0 0 0 0 0 99 0 333333333 66 4 3 7 7 999 4 4 6666666 11111 0 0 0 8888 2 0 55 555555 99 0 222 0 0 22 0 11111111111111 44 0 88 222 8 2222222222222222222222222222222222222222222222222 0 6 666666 8888888 0000000000000000000 2 2222 2 55 0 8 3 2 6 0 22 88 4 55555555555555555555 00 888 00000 0000 000 000 0 00000 888 000000000 0000 4444 2222 3 000000 3 0000 7 3333 33333333 0 555 5 0 2 0 5 5 0000 55 5 22 7 8888 7 8 55 1 333 99 333333333333333333 0000 88 33333333 7 77 777 2222 7 7 0000000 33 7 8 8 88888888888888888888888 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAA-----TATA-AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAGGTGT-T---GGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAA-----TAT--AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAGGTGTGT---GGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATT---TATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGG--TGGCC-AAATTTGATG-TTTATAATTCTGCC------------------AA---CA---TAATT------------AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTT-TTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGG-GC---GGGTTCTAATGTT--AAAA--TTCCTGA-----CAA--G-CAATCAA---GAAGCG---AAC-AAA-----TCT----CAAA---------GCTCTA----AATA---GTAAATCGTGTGTGT----GTGAAGGTGGTT---GGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------C-AATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAA-ATCAAAACTGATGTACACAAAATT--TATTT-T--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-TGTA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGTGTGTATGTACATGTAACTGT-ACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--TTCT---T-TAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATTTAA-A-GG-AAT-G-----GGGAAAGGAGGGAGGGTATTGACCAAAATTTGCTG--TTA-AATTC--TC------TTCAAG-TTCATAA---TACATTAAATTT--ATACAAACAATACAAATAAGTTCAGG----AGTAATTTG--aaataa
gi|12 : cGATTTACACAAAATT--TATTT-T--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----T-AT---------ATGTTCCGTT-TA-TTG-GACCCGGGGGGCC-CGA-AGTA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACATGTG-AC--------AACTGTAA-ACGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTT-TTAA-A-AACATT-AATCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTT----TT--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATG-----------------GT---ACGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TT-ATCAAACAAAAGTAGGACGGGGGGA-----GGGGGC-GCACGGT-TTCTAATGTT--AAAA---TCTTGA------AA--GTCAAAAAAAAGAAAACT---AACAAAA-----TATAAAACCAA---------TATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTT-T--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGG-ATTAAGAGAAAAGGTTCCGTTAGG-TT--GAC-------ACC-CAA-AGTATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-T
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-g
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-T--AAG-----T-AT---------ATGTTCCGTT-TA-TTTGGAC-------ACCTCGA-TGTA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA--------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TTTTA-A-AT-GGC-------GGGAAGGGGAGGGGG
gi|2 : AACCGGAACATTGTTT-TTCAAAGAAAAA----GAGGGGGGG-----GGGGGGAGC----A-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAAC-AAATACAGTAT--GACAAATCTCAAAACGCTCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTGTGGGGGGGGG-GGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTAC-AATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCA------ATTTAC------TT--TGCTTGT--C-A-AA-AT--AACCA-A-C-TTTGGT--GAT-----T-AT---------AT
gi|2 : TGAGAT---AGTTGATTTACGCAAAATTAGTTTTT-T--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--T-AT---------ATGTT-CGTC-TATTT--GAC-------ACC-CGA-agaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgct---GG-TTCTAATGTTCGAAAA--TTATTCA-----CAA--T-TAAACAA---GAAACA---AGC-AAA-----TAT--AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGA-TGTA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATATGTG---------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TTTGA-A-G-----------------GGGGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--T-TA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A--TTGATA-GT-GAT-AGGAATGGGGAGGGGGGAGGGGCG--GGGC-AAATTTGATGTTTTATAAT----TC------TCC---------AA---TA---TAATT------------AATA-CAAGAATTTCAGGAATCAGTAATTT-----GAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--TCT-----------GT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTT--AAAAATGTAC-T-TTTTGTC-ATG-TTTGA-A-G-------------GGAAGGGAGGGAGGGTATTGACA-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTCCAAG-T---TAAAGGTA---TGATTTTTAA-------GATACCAATAATTTCAG----------CCTG--A--AAATAA------------AATCA--TGTT--ACAGTGATAAT----AT-G--AAT------TAACATTGTTT-TTCG-----AAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCTCTT---T-TA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-A-A-------------AT--------GGAA-AGGGCGGGGGTATTAACC-AATTTTGATG-TTT-TAATTCTG--------TACAAGTT---TAA---TA---TAATT------------AATAC--ATAATTTAAG------GTAATT-----GGAAAAAA----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : -AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAAGA-CAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAAT-TA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TTTGA-ATGTGGATAA-----GGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTC-AACAAAGG-AGGGAAAGGGGG------------------T-CTCTAATGTTA-AAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA---AAC-AAA-----TATA-AACAAA---------TCTCAA----AGCT---CTAAATTATGTGTGT----G-GGAGGTGT-T-------GG-GGGGTCCTT--G-ATTTAAATCATCGT----TCCTC--------CAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--TCTT---T-AA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 111 111 111111111 11 222 1111111 11111 1111 1 44444444444444 8888888888888888888888888888888888888888888888888 222222 2222222 6666666666666666666 1111 11 1 11 11 44444444444444444444 22 111 22222 1111 111 111 333333 333333333 1111 1111 2222 11 222222 1 3333 2222 44444444 1 111 1 1 1111 1 1111 11 222222222222222222 1111 11 22222222 111 1111 2222222 11111111111111111111111 11
lowQualScore : 3 55 8 1 22 4 5 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77 1 666666666 00 0 1 5 5 333 0 4 2222222 11111 1 4 5 2222 0 5 77 999999 66 0 777 5 5 88 5 22222222222222 99 8 88 777 0 2222222222222222222222222222222222222222222222222 5 0 777777 8888888 7777777777777777777 3 0000 1 22 0 9 7 0 5 8 22 66 1 55555555555555555555 33 111 00000 4444 444 444 8 555555 222222222 7777 5555 1111 7 88 888888 3 1111 6 8888 88888888 0 777 2 0 3 0 2 2 2222 00 0 99 6 0000 6 7 44 0 777 77 999999999999999999 4444 55 22222222 5 66 111 4444 6 6 1111111 77 6 0 0 22222222222222222222222 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .. . ......... .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... . . .. . .............. .. . .. ... . ................................................. . . ...... ....... ................... . .... . .. . . . . . . .. .. . .................... .. ... ..... .... ... ... . ...... ......... .... .... .... . .. ...... . .... . .... ........ . ... . . . . . . .... .. . .. . .... . . .. . ... .. .................. .... .. ........ . .. ... .... . . ....... .. . . . ....................... . . .. . .
lowQualScore : 6 00 0 4 22 4 4 9 00 8 666 1 66 1 5 888 0 0 0 0 0 99 0 333333333 66 4 3 7 7 999 4 4 6666666 11111 0 0 0 8888 2 0 55 555555 99 0 222 0 0 22 0 11111111111111 44 0 88 222 8 2222222222222222222222222222222222222222222222222 0 6 666666 8888888 0000000000000000000 2 2222 2 55 0 8 3 2 6 0 22 88 4 55555555555555555555 00 888 00000 0000 000 000 0 666666 000000000 0000 4444 2222 3 33 333333 3 0000 7 3333 33333333 0 555 5 0 2 0 5 5 0000 55 5 22 7 8888 7 8 55 1 333 99 333333333333333333 0000 88 33333333 7 77 777 2222 7 7 0000000 33 7 8 8 88888888888888888888888 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATT---TATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGG--TGGCC-AAATTTGATG-TTTATAATTCTGCC------------------AA---CA---TAATT------------AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTT-TTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGG-GC---GGGTTCTAATGTT--AAAA--TTCCTGA-----CAA--G-CAATCAA---GAAGCG---AAC-AAATCT--------CAAA---------GCTCTA----AATA---GTAAATCGTGTGTGT----GTGAAG--GTGGT--TGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------C-AATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAA-ATCAAAACTGATGTACACAAAATT--TATTT-T--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-TGTA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGTGTGTATGTACATGTAACTGT-ACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--TTCT---T-TAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATTTAA-A-GG-AAT-G-----GGGAAAGGAGGGAGGGTATTGACCAAAATTTGCTG--TTA-AATTC--TC------TTCAAG-TTCATAA---TACATTAAATTT--ATACAAACAATACAAATAAGTTCAGG----AGTAATTTG--aaataa
gi|12 : cGATTTACACAAAATT--TATTT-T--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----T-AT---------ATGTTCCGTT-TA-TTG-GACCCGGGGGGCC-CGA-AGTA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACATGTG-AC--------AACTGTAA-ACGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTT-TTAA-A-AACATT-AATCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTT----TT--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATG-----------------GT---ACGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TT-ATCAAACAAAAGTAGGACGGGGGGA-----GGGGGC-GCACGGT-TTCTAATGTT--AAAA---TCTTGA------AA--GTCAAAAAAAAGAAAACT---AACAAAATATAA----AACCAA---------TATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTT-T--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGG-ATTAAGAGAAAAGGTTCCGTTAGG-TT--GAC-------ACC-CAA-AGTATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-T
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-g
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-T--AAG-----T-AT---------ATGTTCCGTT-TA-TTTGGAC-------ACCTCGA-TGTA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA--------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TTTTA-A-AT-GGC-------GGGAAGGGGAGGGGG
gi|2 : AACCGGAACATTGTTT-TTCAAAGAAAAA----GAGGGGGGG-----GGGGGGAGC----A-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAAC-AAATAC-AGTATGACAAATCTCAAAACGCTCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTG-TGGGGGGGGG-GGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTAC-AATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCA------ATTTAC------TT--TGCTTGT--C-A-AA-AT--AACCA-A-C-TTTGGT--GAT-----T-AT---------AT
gi|2 : TGAGAT---AGTTGATTTACGCAAAATTAGTTTTT-T--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--T-AT---------ATGTT-CGTC-TATTT--GAC-------ACC-CGA-agaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgct---GG-TTCTAATGTTCGAAAA--TTATTCA-----CAA--T-TAAACAA---GAAACA---AGC-AAATAT------AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGA-TGTA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATATGTG---------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TTTGA-A-G-----------------GGGGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--T-TA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A--TTGATA-GT-GAT-AGGAATGGGGAGGGGGGAGGGGCG--GGGC-AAATTTGATGTTTTATAAT----TC------TCC---------AA---TA---TAATT------------AATA-CAAGAATTTCAGGAATCAGTAATTT-----GAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--TCT-----------GT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTT--AAAAATGTAC-T-TTTTGTC-ATG-TTTGA-A-G-------------GGAAGGGAGGGAGGGTATTGACA-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTCCAAG-T---TAAAGGTA---TGATTTTTAA-------GATACCAATAATTTCAG----------CCTG--A--AAATAA------------AATCA--TGTT--ACAGTGATAAT----AT-G--AAT------TAACATTGTTT-TTCG-----AAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCTCTT---T-TA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-A-A-------------AT--------GGAA-AGGGCGGGGGTATTAACC-AATTTTGATG-TTT-TAATTCTG--------TACAAGTT---TAA---TA---TAATT------------AATAC--ATAATTTAAG------GTAATT-----GGAAAAAA----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : -AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAAGA-CAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAAT-TA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TTTGA-ATGTGGATAA-----GGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTC-AACAAAGG-AGGGAAAGGGGG------------------T-CTCTAATGTTA-AAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA---AAC-AAATAT-A----AACAAA---------TCTCAA----AGCT---CTAAATTATGTGTGT----G-GGAG--GTG-T--T----GG-GGGGTCCTT--G-ATTTAAATCATCGT----TCCTC--------CAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--TCTT---T-AA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 111 111 111111111 11 222 1111111 11111 1111 1 44444444444444 8888888888888888888888888888888888888888888888888 222222 2222222 6666666666666666666 1111 11 1 11 11 44444444444444444444 22 111 22222 1111 111 111 333333 333333333 1111 1111 2222 11 222222 1 3333 2222 44444444 1 111 1 1 1111 1 1111 11 222222222222222222 1111 11 22222222 111 1111 2222222 11111111111111111111111 11
lowQualScore : 3 55 8 1 22 4 5 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77 1 666666666 00 0 1 5 5 333 0 4 2222222 11111 1 4 5 2222 0 5 77 999999 66 0 777 5 5 88 5 22222222222222 99 8 88 777 0 2222222222222222222222222222222222222222222222222 5 0 777777 8888888 7777777777777777777 3 0000 1 22 0 9 7 0 5 8 22 66 1 55555555555555555555 33 111 00000 4444 444 444 8 555555 222222222 7777 5555 1111 7 88 888888 3 1111 6 8888 88888888 0 777 2 0 3 0 2 2 2222 00 0 99 6 0000 6 7 44 0 777 77 999999999999999999 4444 55 22222222 5 66 111 4444 6 6 1111111 77 6 0 0 22222222222222222222222 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .. . ......... .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... . . .. . .............. .. . .. ... . ................................................. . . ...... ....... ................... . .... . .. . . . . . . .. .. . .................... .. ... ..... .... ... ... . ...... ......... .... .... .... . .. ...... . .... . .... ........ . ... . . . . . . .... .. . .. . .... . . .. . ... .. .................. .... .. ........ . .. ... .... . . ....... .. . . . ....................... . . .. . .
lowQualScore : 6 00 0 4 22 4 4 9 00 8 666 1 66 1 5 888 0 0 0 0 0 99 0 333333333 66 4 3 7 7 999 4 4 6666666 11111 0 0 0 8888 2 0 55 555555 99 0 222 0 0 22 0 11111111111111 44 0 88 222 8 2222222222222222222222222222222222222222222222222 0 6 666666 8888888 0000000000000000000 2 2222 2 55 0 8 3 2 6 0 22 88 4 55555555555555555555 00 888 00000 0000 000 000 0 666666 000000000 0000 4444 2222 3 33 333333 3 0000 7 3333 33333333 0 555 5 0 2 0 5 5 0000 55 5 22 7 8888 7 8 55 1 333 99 333333333333333333 0000 88 33333333 7 77 777 2222 7 7 0000000 33 7 8 8 88888888888888888888888 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATT---TATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGG--TGGCC-AAATTTGATG-TTTATAATTCTGCC------------------AA---CA---TAATT------------AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTT-TTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGG-GC---GGGTTCTAATGTT--AAAA--TTCCTGA-----CAA--G-CAATCAA---GAAGCG---AAC-AAATCT--------CAAA---------GCTCTA----AATA---GTAAATCGTGTGTGT----GTGAAG--GTGGT--TGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------C-AATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAA-ATCAAAACTGATGTACACAAAATT--TATTT-T--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-TGTA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGTGTGTATGTACATGTAACTGT-ACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--TTCT---T-TAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATTTAA-A-GG-AAT-G-----GGGAAAGGAGGGAGGGTATTGACCAAAATTTGCTG--TTA-AATTC--TC------TTCAAG-TTCATAA---TACATTAAATTT--ATACAAACAATACAAATAAGTTCAGG----AGTAATTTG--aaataa
gi|12 : cGATTTACACAAAATT--TATTT-T--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----T-AT---------ATGTTCCGTT-TA-TTG-GACCCGGGGGGCC-CGA-AGTA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACATGTG-AC--------AACTGTAA-ACGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTT-TTAA-A-AACATT-AATCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTT----TT--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATG-----------------GT---ACGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TT-ATCAAACAAAAGTAGGACGGGGGGA-----GGGGGC-GCACGGT-TTCTAATGTT--AAAA---TCTTGA------AA--GTCAAAAAAAAGAAAACT---AACAAAATATAA----AACCAA---------TATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTT-T--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGG-ATTAAGAGAAAAGGTTCCGTTAGG-TT--GAC-------ACC-CAA-AGTATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-T
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-g
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-T--AAG-----T-AT---------ATGTTCCGTT-TA-TTTGGAC-------ACCTCGA-TGTA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA--------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TTTTA-A-AT-GGC-------GGGAAGGGGAGGGGG
gi|2 : AACCGGAACATTGTTT-TTCAAAGAAAAA----GAGGGGGGG-----GGGGGGAGC----A-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAAC-AAATAC-AGTATGACAAATCTCAAAACGCTCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTG-TGGGGGGGGG-GGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTAC-AATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCA------ATTTAC------TT--TGCTTGT--C-A-AA-AT--AACCA-A-C-TTTGGT--GAT-----T-AT---------AT
gi|2 : TGAGAT---AGTTGATTTACGCAAAATTAGTTTTT-T--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--T-AT---------ATGTT-CGTC-TATTT--GAC-------ACC-CGA-agaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgct---GG-TTCTAATGTTCGAAAA--TTATTCA-----CAA--T-TAAACAA---GAAACA---AGC-AAATAT------AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGA-TGTA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATATGTG---------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TTTGA-A-G-----------------GGGGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--T-TA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A--TTGATA-GT-GAT-AGGAATGGGGAGGGGGGAGGGGCG--GGGC-AAATTTGATGTTTTATAAT----TC------TCC---------AA---TA---TAATT------------AATA-CAAGAATTTCAGGAATCAGTAATTT-----GAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--TCT-----------GT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTT--AAAAATGTAC-T-TTTTGTC-ATG-TTTGA-A-G-------------GGAAGGGAGGGAGGGTATTGACA-AAAGTTGATG-TT--TAATTCTGTCCTTCTGTCCAAG-T---TAAAGGTA---TGATTTTTAA-------GATACCAATAATTTCAG----------CCTG--A--AAATAA------------AATCA--TGTT--ACAGTGATAAT----AT-G--AAT------TAACATTGTTT-TTCG-----AAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCTCTT---T-TA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-A-A-------------AT--------GGAA-AGGGCGGGGGTATTAACC-AATTTTGATG-TTT-TAATTCTG--------TACAAGTT---TAA---TA---TAATT------------AATAC--ATAATTTAAG------GTAATT-----GGAAAAAA----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : -AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAAGA-CAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAAT-TA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TTTGA-ATGTGGATAA-----GGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTC-AACAAAGG-AGGGAAAGGGGG------------------T-CTCTAATGTTA-AAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA---AAC-AAATAT-A----AACAAA---------TCTCAA----AGCT---CTAAATTATGTGTGT----G-GGAG--GTG-T--T----GG-GGGGTCCTT--G-ATTTAAATCATCGT----TCCTC--------CAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--TCTT---T-AA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA
blockSeqs : T AA T T GC T G T GC A CAG T AG G AGA C . C A C TC T TAATTA GG C C A TA G ACTACTA GTATA A A C AGTC C AG GAGAAA TT A TAT A T AT T GTGATAGGAAT AT A TT TAT TCTTCAAGTTCATAATACATTAAATTTATACAAAC A GAATCA TGA AATCA T AATT A CA . A A T A AA TA C GGGGGCGCACGGT CG ATT AAAAA AAG AAG TTT A AGTAT TCTCAAAAC AAAC AGCT ATAC T CT TGGGG . CA C . GAATTTTA A TTC C A A T C G TCA A AG G TAA T T TA TC GC AAAAGGATTAAGAGAAA AGG TG CCGGGGGG T CG TGA ATTG C A AAAG CA T TGACAACTGTAAA T C CA T
blockSeqs : . . C A GG . A C CA A TAG T AG G AAA . . . . . . A TTAAT T A . . AG . TAT . G . . GGT . C ACT . T A . . T . TGTGGATAA AT . T TA TGTCCTTCTGTCCAAGTTAAAGGTATGATTTTTAA C GA TG AATA T AGTG T C . T . T . AA A A GGGGGGAGCA C T . GT . . . AA . . T . . . TT . G . . . . . C . A . C G CAA G . . AT . C TA CC . TATTAT TAT G A . A . . . . GCTA C . GTA . . . .
blockSeqs : . . . A GT . T C GA A . G AG G AGA . . . . . . C ATTA T A . . GA . ATT . G . . AGT . G ATT . . A . . T . GGAATG AT . T TT TGTACAAGTTTAATATAATT C . GG G . T G . . . G . G A G T A T . G . . . A . . A . . . . . . . C G T . . . A . G T A . TAAT TA . A . A . . . . AA T . TG . . . .
blockSeqs : . . . T TG . A C GT A . T AT G A . . . . . . C TTA T A . . GG . TAT . T . . ATT . G ACT . . T . . T . ATGGC G . . T TCTCCAATATAATT . . . . A . A . . . T . . . . . . T . . C . C . T . TAT TA . A . T . . . . A T . . . . . .
blockSeqs : . . . A TG . T C AA A . T . G . . . . . . . G TAA G C . . G . ACT . T . . A . G ACT . . A . . T . AT . . A . . . C . TAT . . A . T . . . . A T .
blockSeqs : . . . T TG . T C GA . . . . . . . . . . . . C . . . . . A . TAT . T . . T . G AA . . A . . . . G C . TAT .
blockSeqs : . . . A GC . A . . . . . . . . . . . . . . TT . T . . A . . . . . . . . . . G
blockSeqs : . . . A . . G . . . . . . . A .
blockSeqs : . . . T .
blockSeqs : . .
blockSeqCons : TTA****** ATG*********** AT T** TTCCAAGTTNAATATAATTTTA*************************** GA**** A* ** A***** TG*********************
originalCons : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-A-GT-GAT-A-----GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTTATAATTCTGTC------TCCAAG-T---TAA---TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTTC-AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG-A---------AACTGT-A-ACGTGCA-TTTGT-CGC--ACA-TGTAATTT
finalCons : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTTTTA------TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TTTGA-AATG-----------GGGAAGGGGGGGGGGGTATTGACC-AAATTTGATG-TTT--AATTCTTCCAAGTTNAATATAATTTTA---------------------------AATACCAATAATTTCAGGA----GTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAGA-GGGGGGGGGGG-----GGGGGG-GC---GN-TTCTAATGTT--AAAA--TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATATA-----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACATGTG---------------------CGTGCA-TTTGT-CGC--ACA-TGTAATTT
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 111 111 111111111 11 222 1111111 11111 1111 1 11111 22222222222222222222222222222 111 11 9999999999999999999999999999999999999999999999 222222 2222222 6666666666666666666 1111 11 1 11 11 3333333333333333333 11 1111 22222 1111 111 111 33333333 333333333 1111 1111 2222 11 222222 1 3333 2222 44444444 1 111 1 1 1111 1 1111 11 222222222222222222 1111 11 22222222 111 1111 2222222 00000000000000000000 11
lowQualScore : 3 55 8 1 22 4 5 2 22 1 555 3 77 0 2 555 5 5 5 5 5 77 1 666666666 00 0 1 5 5 333 0 4 2222222 11111 1 4 5 2222 0 5 77 999999 66 0 777 11111 33333333333333333333333333333 66 99 8 8 444 11 3333333333333333333333333333333333333333333333 5 0 777777 8888888 7777777777777777777 3 0000 1 22 0 9 7 0 5 8 22 66 9999999999999999999 99 4444 00000 4444 444 444 8 00000000 222222222 7777 5555 1111 7 88 888888 3 1111 6 8888 88888888 0 777 2 0 3 0 2 2 2222 00 0 99 6 0000 6 7 44 0 777 77 999999999999999999 4444 55 22222222 5 66 111 4444 6 6 1111111 77 6 0 88 33333333333333333333 8 8 11 8 0
lowQualScore : . .. . . .. . . . .. . ... . .. . . ... . . . . . .. . ......... .. . . . . ... . . ....... ..... . . . .... . . .. ...... .. . ... ..... ............................. .. .. . . ... .. .............................................. . . ...... ....... ................... . .... . .. . . . . . . .. .. ................... .. .... ..... .... ... ... . ........ ......... .... .... .... . .. ...... . .... . .... ........ . ... . . . . . . .... .. . .. . .... . . .. . ... .. .................. .... .. ........ . .. ... .... . . ....... .. . . .. .................... . . .. . .
lowQualScore : 6 00 0 4 22 4 4 9 00 8 666 1 66 1 5 888 0 0 0 0 0 99 0 333333333 66 4 3 7 7 999 4 4 6666666 11111 0 0 0 8888 2 0 55 555555 99 0 222 00000 99999999999999999999999999999 99 44 0 0 000 00 4444444444444444444444444444444444444444444444 0 6 666666 8888888 0000000000000000000 2 2222 2 55 0 8 3 2 6 0 22 88 5555555555555555555 00 8888 00000 0000 000 000 0 22222222 000000000 0000 4444 2222 3 33 333333 3 0000 7 3333 33333333 0 555 5 0 2 0 5 5 0000 55 5 22 7 8888 7 8 55 1 333 99 333333333333333333 0000 88 33333333 7 77 777 2222 7 7 0000000 33 7 8 88 00000000000000000000 0 0 00 0 8
consensus : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TT-----T---GA----A-ATG---G--GGAAGGG--GGGGGGGGTATTGACC-AAATTTGATG-TT---TA--ATTCTG--------TCCAAGTT--TAA--TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGNGC---GN-TTCTAATGTTC-AAAA---TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACAT-GTG--------------------CGTGCA-TTTGT-CGC--ACA-TGTAATTT
Reference ( family-2092 ) : ATTCATTTTTGCAGTTACTGCCCTT-ACACCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCGTCAGATAAAA---TAGTAACAAATAGAGTATTGTAGAGT-AA-GCTTACG-GTAC-CAAA-A--TNTT---T-TA--TGT-TCCGAAT-TTT-AACA-A-TTGTGT-CATANNT----CT-----AATCANAAC-AAGGTTT-AGTTTAGT-AGAT-TTTATG-GAGAAA---ACTTCTT--AGAA-TGCAC-A-TTTCGTC-A-A-TT-----T---GA----A-ATG---G--GGAAGGG--GGGGGGGGTATTGACC-AAATTTGATG-TT---TA--ATTCT---------TCCAAGTT--NAA--TA---TAATTTT--A-------AATACCAATAATTTCAGG----AGTAATTTG--AGGAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAATAAACGGGAACATTGTTT-TTCGAACAAAAG-AGGGGGGGGGGG-----GGGGGGGC---GN-TTCTAATGTT--AAAA---TTCTTGA-----CAA--G-CAAACAA---GAAACA---AAC-AAATAT-A----AACAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----GTGGAG--GTG-T--TGGGGGG-GGGGTCCTTCAG-ATTTAAATCATCGT----TCCTC--------C-AATAT---ACCACTA-TTTAAGAAA-GAAGAGGAGCAAACCTATAAGATCAAAGCTGATTTACGCAAAATT--TATTT-T--A-A-AACATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-NGTA---CA----CATGTTTT-CGTC-AGC---A---GTGC-GAAA-TAATTACAT-GTG--------------------CGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|1 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGTGG--CG-TGCTAATCGATGGGGTCCTAA-GCATCAGATAAAA---TAGTAACAAATAGAATATTGTAAAGT-AAAGCTTACG-GTAC-TAAA-A--CATT---TATA--TAT-TCCGAAT-GTT-CACATA-TTGTAT-CATAACT----CT-----AATCATAAC-AAGGTTT-AGTTTCGT-AGAT-TTCATA-TAGAAA---ATTTCTT--AAAA-TGCAC-A-TTTCGTC-A-A-TT-----T---GA----A-GTGATAG--GGAAGGG--GGGGGGGGG--TGGCC-AAATTTGATG-TT---TATAATTCT---------GCCAA----------CA---TAATT------------AATACCAAGAATTTCAGG----AGTAATTTGGAAGAAAAAAAGAAGAAGATACTAAT-AGACATTTAAAAAT-AAAATC-ACATTGAAAACAAACGGGAACATTTTTT-TTTCAACAGAGGGAGGGGGGGGGGGCGGGGGGGGGGGC---GGGTTCTAATGTT--AAAA---TTCCTGA-----CAA--G-CAATCAA---GAAGCG---AAC-AAATCT--------CAAA---------GCTCTA----AATA---GTAAATCGTGTGTGT----GTGAAG--GTGGT--TGGGGGGTGGGGTCCTTCAATATTTAAATCATCGTACGTTCCTC--------C-AATAT---ACCACTA-TTTAGGAAA-GAAGAGGAGCAAAC-TATAA-ATCAAAACTGATGTACACAAAATT--TATTT-T--A-A-AATATTAAATCATA-C-GTGAGT--GAG-----T-AT---------ATGTTCCGTT-TA-TT--GAC-------GCC-CGA-TGTA---CA----CATGTTTT-CGTC-AGC---A---GTGT-GAAT-TGATTACGT-GTGTATGTACATGTAACTGTACACGTGCA-TTTGT-CGC--ACA-TGTAATTT
gi|10 : TTTTGGCAGCCACTCCCTTT-ACACCGGAAGTTGGGGG--CGTTGCTTATTGATGCGGTCC--A-GTGT------------TAATAACAAATA---T-CTGTAGAGT-CA-GCTTATT-GTAC-CAAA-A--TTCT---T-TAATTGTGGCTGCGTCTTT-AACA-G-TTGTGT-CATATAT----CTGTATAAAACAAAAC-AA
gi|11 : t-CATA-------CT-----AATCAGAAC-AAGGTTT-AGTTTA---------TTATA-------------TCTT----------------TTCGTC-A-AATT-----TAAAGG----A-ATG---G--GGAAAGG--AGGGAGGGTATTGACCAAAATTTGCTG-TT---AA--ATTCTC--------TTCAAGTTCATAA--TACATTAAATTT--ATACAAACAATACAAATAAGTTCAGG----AGTAATTTG--aaataa
gi|12 : cGATTTACACAAAATT--TATTT-T--A-A-AATAT--AATCATA-A-GTGAGT--AAG-----T-AT---------ATGTTCCGTT-TA-TTG-GACCCGGGGGGCC-CGA-AGTA---CA----CATGTTTT-CGCC-AGC---AAAGGTGC--AAA-TAATCACAT-GTGACAACTGTAAA---------CGTGCATTTTGT-CGCCAACATTGT-ATTTtaa
gi|13 : CAAAATT--TATTT-TTAA-A-AACATT-AATCGTATC-GTGAAA--CAG-----TAAT---------ATGTTCCGTT----TT--GAC-------ACC-CGACGGTA---CA----CATGTTTT-CGTC-AGC---A---GTGCAGAGATTAATTACATGGTA--------------------CGTGCA-TTTGTCCGC--ACA-TCTA
gi|14 : ttatAATGGGAACATTG-TT-ATCAAACAAAAGTAGGACGGGGGGA-----GGGGGCGCACGGT-TTCTAATGTT--AAAA----TCTTGA------AA--GTCAAAAAAAAGAAAACT---AACAAAATATAA----AACCAA---------TATCTAAAACAATAGCTCTAAATCATtt
gi|15 : tAATT--AATTT-T--ATATAAGATTAAATCACA-T-GTGAGT--GAGAAAAGG-ATTAAGAGAAAAGGTTCCGTTAGG-TT--GAC-------ACC-CAA-AGTATGACAATTGCATGTTTG--GTC-AGC---A---ATGT-GAAA-T
gi|16 : ATTCATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGGGGG--CG-TGCTAATCGATGGGGTCCTAA-GCATTAGCTAAAA---TAGTAAC----AGAGTATTGTAAATT-AA-GCTTACG-GTAC-TAAA-g
gi|17 : CGTTTTTGTAGTTTCTCCCCTT-ACACCGGAAGTAGTGGG--CGCTG-TAGTCAGTGTGATCCTTA-CCTTCACAT-ACA---TAGTA
gi|18 : ATCATA-CCGTGA-T--AAG-----T-AT---------ATGTTCCGTT-TA-TTTGGAC-------ACCTCGA-TGTA---CA----CATGTTTTCCGTCAAGCA--A---GTGT-GAAA-TAA-TACA--------------------------ATGCA-TTTGT-CGC--ACC-TATAActggaaagatacttatgatacataacaaacaatt
gi|19 : tagt-CATAATT----TT-------TTAGAAC-A---TTT-TATTT--T-ATAT-CTTATA-CAAAAA---ACTTTTTTTAAAA-TATAT-A-TTTC------A-TT-----T---TA----A-ATG---GCGGGAAGGG--GAGGGGG
gi|2 : AACCGGAACATTGTTT-TTCAAAGAAAAA---GAGGGGGGGG-----GGGGGAGC----A-TTCTAATGTTC-AAAA---TTCTTGA-----CAA--G-CAAACAA---GAAACATTTAAC-AAATAC-AGTATGACAAATCTCAAAACGCTCTA----AATT---CTAAATCGCGTGTGTATACGTGGTGCTGTG-TGGGGGGGGG-GGGGGGCTCCA--ATTTAAATCAT-GT----TCCTTGAATTTTAC-AATAT---TTCA-TC-TCTAAG-AA-GAAGAGGGGAAACCCTATAAGATCA------ATTTAC------TT--TGCTTGT--C-A-AA-AT--AACCA-A-C-TTTGGT--GAT-----T-AT---------AT
gi|2 : TGAGAT---AGTTGATTTACGCAAAATTAGTTTTT-T--A-A-AACATTAAATCATA-C-GTGAGTGCGAGTAT--T-AT---------ATGTT-CGTC-TATTT--GAC-------ACC-CGA-agaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgcttgagatagttgatttacgcaaaattagttttttaaaacattaaatcatacgtgagtgcgagtattatatgttcgtctatttgacacccgatca
gi|20 : aaccggaacattgtttttcaaagaaaaagagggggggggggggagcattctaatgttcaaaattcttgacaagcaaacaagaaacatttaacaaatacagtatgacaaatctcaaaacgctctaaattctaaatcgcgtgtgtatacgtggtgctgtgtgggggggggggggggctccaatttaaatcatgttccttgaattttacaatatttcatctctaagaagaagaggggaaaccctataagatcaatttactttgcttgtcaaaataaccaactttggtgattatatagaaatagttagcattgccggtagagtctctctctctctctctctctcatgtgttttgataattgtttttttgtgttgtttgaatgct---GG-TTCTAATGTTCGAAAA---TTATTCA-----CAA--T-TAAACAA---GAAACA---AGC-AAATAT-A----A-CAAA---------GCTCTA----AATA---CTAAATCGTGTGTGT----tca
gi|21 : -CGA-TGTA---CA----C--GTTTT-CGTC-AGCGCTA---GTGT-GAAA-TAATTATAT-GTG--------------------CGTGCA-TTTGT-CGC--ACA-TGTAGTTa
gi|22 : cacccgatcgg-AAGGTTT-AGTTTGGT-AGAT-TTTATG-GAGAAA---ATTTCTT--AGCA-TGCAT-A-TTTCGTC-A-A-TT-----T---GA----A--------------GGG--GGGGGG
gi|23 : tTTTTTGCAGTTACTCCCCTT-ACACCAAAAGTTGAGGG--CA-TTCTTATTGAT
gi|24 : atTTTTGCAGTTACTGCCCTT-GCACTGGTAGTAGGGGG--actatcccaa
gi|25 : ATTCATTTTTGCAGTTACTGCCtcct
gi|3 : atggcTCATTTT-GCAGTTACTGCCCTT-ACATCGGAAGTAGGGGAAACG-TGCTAATCGAATGGGTCCTAA-GCATCAGATAAAA---TAGAAACAAATAGAGTATT-----GT-AA-ACTTACGCGTACATAAA-A--CATTA--T-TA--TGT-TCCGAAT-TTA-AAGATA-TAGTAT-CATAACTACTATT-----AATCATAGC-AAGGTTTCAGTTTAGT-AAATCTTTATG-GAGAAA---AA-TCAT--AGAA-TTCACTATTTTCGTC-A-A-TTGATAGT---GATAGGA-ATG---G--GG-AGGG--GGGAGGGGCG--GGGC-AAATTTGATG-TTTTATA--ATTCT---------CC---------AA--TA---TAATT------------AATA-CAAGAATTTCAGGAATCAGTAATTT-----GAAAAAA------------AAT-A--TATTTAAAAATTAAAATC-ACAT-GAAAA
gi|4 : TTTATTTTTGCAGTCACTGCCCAT-ACACCAGAAGTAGGGGT--TG-TGCTTACTGATTGGGTCCTAA-GTTTCAGTTAAAACAGTAGTAACAAAGAGAGTATAGTA-----AA-GCTTACA-GTAC-CAAA-A--TCT-----------GT------AT-T------A-A-TT---T-CAT--TT----CT-----GTTTATAA-----GTTT-A---TA---AGAT-ATCATG-GAGAAC---ACTTTTT--AAAAATGTAC-T-TTTTGTC-ATG-TT-----T---GA----A-------G--GGAAGGG--AGGGAGGGTATTGACA-AAAGTTGATG-TT---TA--ATTCTGTCCTTCTGTCCAAGTT--AAAGGTA---TGATTTTTAA-------GATACCAATAATTTCAG----------CCTG--A--AAATAA------------AATCA--TGTT--ACAGTGATAAT----AT-G--AAT------TAACATTGTTT-TTCG-----AAG-AGGGGGGGaatt
gi|5 : ATTTTTGCAGTTACTGCCCTT-ACATCGGAAGTAGAGGG--CG-TGGTAATCGATTGGGT-CTAATGCTTCAAATAAAATAGTAGTAACAAATAGATTATTGT----T-AA-GCTTACG-GCAC-CAAA-ATCTCTT---T-TA--TGT-TCTGACG-TTT-AATA-AGTTGTGT-CTTATAT----CT-----AATCATAACAAAAGTTT-AGTTTATT-AAAA-TGTATG-GAGAAA---ACTTTTT--AGAA-TGTAC-A-TTTCGTC-----------------A----A-ATG---G-----AAAG--GGCGGGGGTATTAACC-AATTTTGATGTTT---TA--ATTCTG--------TACAAGTT--TAA--TA---TAATT------------AATAC--ATAATTTAAG------GTAATT-----GGAAAAAA----------------G--TACTTAAA---TGGGATCAACCT-GTAAATAAA
gi|6 : -AATATTTCACCACTAATTGAAAAAA-GAAGAGGAGCAAACCTATAAGA-CAAAGCTGGTt
gi|7 : ATTTTTGCAGTTACTGCCCTT-ACATTGGAAGTAGGGGG--CG-TGCTAATCG--------------CATCAGATAAAA---TAGTAACAAATAG----TT-----GT-AA-GCTTACG-GT---TAGACA--TGTTTAAT-TA--TG--TCCGAAT-TTTAAACAGA-TTATATGCATAACT----AT-----AATCATAAC-AAGG-TT-AGTTTAGTCAGAT-TTTATGAGAGAAAGAGAAATCAT--AGAATTGCAC-A-TTTCGTCAA-A-TT-----T---GA----ATGTG---G--ATAAGGGAAGGGGGGGGgctcataaataaccaactttgcttgtaatttctagggagggagaaatagtgctttgttggaagaaaaggggccaattccctccctctcatctctcactttttacgtgcttgaataattatttttatgttatgcttcgggtaagttgatataccaaacttcattttgaaagattagtaaacgtgtgtagtaatcagattttcagcaagaaaga
gi|8 : GGGGGCATTGGTTATTC-AACAAAGG-AGGGAAAGGGGG-----------------T-CTCTAATGTT--AAAAAATTTCTTGAAAAAACAAAAG-CAAAAAA---GAAACA---AAC-AAATAT-A----AACAAA---------TCTCAA----AGCT---CTAAATTATGTGTGT----G-GGAG--GTG-T--T----GG-GGGGTCCTT--G-ATTTAAATCATCGT----TCCTC--------CAAATAT---ACCACTA-TTTGAGAAATGAAGAGGAGCAAACC
gi|9 : TTTTGCAGTCACTTCCCTTTACACCGGAAGTTGGGGG--CG-TGCTTATTGATGCGGTCCTA----GT-------AG---TATTAACAAA-----TACTGTAGAGTCAA-GCTTATT-GTAC-CAAA-T--TCTT---T-AA--TGT-GCTGCGT-TTT-AACAGG-TTGTGT-CATATAT----CT-----GTTAAAAAC-AA