lowQualScore : 1 1111 111111 2222222 1 11 1111111 11 1 1 222 1
lowQualScore : 3 1 7 3 77 2 2 4444 2 2 7777 55555 3 55 8 4 0 4 66 66 222222 4 4 4 5 66 8888888 0 6 88 5555555 7 88 7 3 3 333 7 2 77 4
lowQualScore : . . . . .. . . .... . . .... ..... . .. . . . . .. .. ...... . . . . .. ....... . . .. ....... . .. . . . ... . . .. .
lowQualScore : 6 2 3 1 00 9 9 4444 9 9 8888 33333 1 00 0 0 8 4 11 11 888888 4 4 4 0 99 8888888 0 7 77 3333333 3 33 3 3 3 333 0 5 00 0
consensus : AAAAAATAC-CGTACGGTTTCTTCAC-GGATCACTGGNTAT-GG-G---CG-GAGC-TTN---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TG--TATATCGTNN--T--TATACACAGA-GTTCCCGCTTAT-CTAT-ACAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCNAAANNTTTCTNAACGTTTATCTTTA
Reference ( gi|1 ) : AAAAAATAC-CGTACGGTGTCTTCAC-GGATCACTGAACAT-GG-G---GG-GAGC-TTT---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TG--TATATCGTAT--T--TATACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCATACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACATTTATCTTTA
gi|8 : AAAAAATAC-CGTACGGTTTCTTCAC-GGAACACTGAACAT-GG-G---AG-GAGC-TTT---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TG--TATAT
gi|14 : AAAAAATAC-CGGTCGGTTTCTTCAC-GAATCACTGGTTAT-GG-G---CG-GAGC-TTA---TCTGCA--G-TCAT
gi|12 : aAAAAAACGC-CGGTCGGTTTCTTTAC-AGAGCACTGGTTAT-GG-G---CA-GAGC-TTA---TCTGTG--G-TCATTG
gi|3 : aAAAAATACACGTACG-T-TCTTCAC-GGACCACTGAACAT-GGCG---AGCGAGC-TTT---TTTC-A--G-TCATTGC--AATTATACCTGGAA-TTTTACT-AG--CCATCTA------G-ACTCATG-CCTTGGCTT--TATATCGTCG--T--TATACACAGACGTT-CCG-TTATCCTATCACAGTTGAATTCATTACAT-GA-AAAACAACATTCTACCTGTATGTACAGtc
gi|5 : AAAAATAC-CGTACGGTTTCTTCACGGGAACACTGAACAT-AG-GAGAAG-GAGC-TTT---TTTTCA--GTTCATTGC--AATTATACTAGGAACTTTACCT-AG--CC--CT-------G-A-TCAGGCCCTTTG-TG--TATATCAT
gi|11 : cagAAAATAT-CATATGGTTTCTTCAC-GGATCATTGAACAT-GG-G---AG-GAGC-TTT---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACtgaatagggaaccatcatgcgttgaa
gi|15 : AAAGTAC-TG---AGTTTCTTCAC-GGATCACTGATTGT-GG-G---CG-GAGC-
gi|7 : AATAC-CGTACAGTTTCTTCTC-GGATCACTGGTTAT-GG-G---CA-GAGG-TTA---TTCATG--G-TCATTGT--TATT-TACCTGGAA-TT---CT-A-------CTA------G-A-CCAAG-Catgtggatatagttgatcga
gi|13 : AATAC-AGTACGGTTTCTTCAC-GGATCGTTGGTTCT-GG-G---CG-GAGCATTTATATTTATG--G-TCATTAC--gctcttgcttttgatatacacggg
gi|2 : cATAC-CATACGGTTTCTTCAC-GGATCACTGAGTAT-GG-G---AG-GAGA-ATC---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TTAGG-CCGTTG-TG--TATATCGTTG--T--TATACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACATGGG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCAAAACATTTCTAAACATTTATCTTT
gi|6 : AC-CGCACGATTTCTTCAC-GGATCGCTGGTGAT-GG-G---CG-GAGC---T---TACCTACCG-TAATTGT--TATT-TACCTGGAA-TT---CT--G--CC--TTACCAAGGG-A-TCTTG-CTTTTG--A--TATA
gi|4 : aaacccTCTTCAC-GGATCACTGAATATTGG-G---GG-GACC-TTC---TTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CT--ATA------GAA-TCAGG-CCGTTG-TG--TATATCGTGT--TAATAAACACAGA-GTTCCC-TTTAT-C-AA-ATAA-TGAAT--ATT-CAT-GGAAAAAAAA---TCTACCTGTAcacag
gi|9 : catacgtgtttctTTCAC-GTATCACCGACTAT-GG-G---AG-GAAC-TTC---TTT----------------AATT-TACCTGGAT-TTTACCT-AGACCC--CTA------G-A-TCAGG-CCTTTG-TGTATATATCATATTGT--TATACACAGA-GTgt
gi|10 : ATCATCGGATAT-AG-G---CG-GGGC-TTA---TCTACA--G-TCATTGTTAGATT-TACGCGGTG-TTTACCTGAG--CA--AGA------T-A-TCAGA-CCGTTG-TG--TAGATatgcag
gi|16 : ATTTTATACCAAAATTTCCCAAAATTTTCTTAACGTTTATCTTTA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTGTTCCAGGGCTCTCTGTACTTAAACAATG
Alignments
lowQualScore : 111111 1111 11 111 11 1 11 1 1 111
lowQualScore : 3 3 555 2 1 2 444 6666 2 555 1 3 33 2 44 7 3 4 55 55 111111 4 4 4 4 0000 22 11 8 111 33 0 3 33 3 0 0 777 4 0 1 22 1 0
lowQualScore : . . ... . . . ... .... . ... . . .. . .. . . . .. .. ...... . . . . .... .. .. . ... .. . . .. . . . ... . . . .. . .
lowQualScore : 1 1 000 9 0 7 777 3333 7 000 0 6 99 9 66 3 6 0 55 55 555555 0 0 0 4 6666 00 00 0 555 22 0 2 88 2 0 0 555 0 7 0 00 0 7
consensus : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TGTATAT----CGTNGT--TATACACAGA-GTTCCCGCTTATC-TAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
Reference ( family-2081 ) : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGGNTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TGTATAT----CGTNNT--TATACACAGA-GTTCCCGCTTATC-TAT-ACAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCNAAANNTTTCTNAACGTTTATCTTTA
gi|1 : AAAAAATAC-CGTACG-GTGTCTTC---AC-GGATCACTGAACAT-GG---G---GGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TGTATAT----CGTATT--TATACACAGA-GTTCCCGCTTATC-TAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCATACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACATTTATCTTTA
gi|10 : ATCATCGGATAT-AG---G---CGGGGC-T---TATCTACA--G-TCATTGTTAGATT-TACGCGGTG-TTTACCTGAG--CA--AGA------T-A-TCAGA-CCGTTG-TGTAGAT----
gi|11 : AAAATAT-CATATG-GTTTCTTC---AC-GGATCATTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTAC
gi|12 : AAAAAACGC-CGGTCG-GTTTCTTT---AC-AGAGCACTGGTTAT-GG---G---CAGAGC-T---TATCTGTG--G-TCATTG
gi|13 : aAATAC-AGTACG-GTTTCTTC---AC-GGATCGTTGGTTCT-GG---G---CGGAGCATTTATATTTATG--G-TCATTAC--tc
gi|14 : cAAAAAATAC-CGGTCG-GTTTCTTC---AC-GAATCACTGGTTAT-GG---G---CGGAGC-T---TATCTGCA--G-TCAT
gi|15 : aAAAGTAC-TG---A-GTTTCTTC---AC-GGATCACTGATTGT-GG---G---CGGAGC-
gi|16 : ATTTTATACCAAAATTTCCCAAAATTTTCTTAACGTTTATCTTTAatgtggatatagttgatcga
gi|2 : ATAC-CATACG-GTTTCTTC---AC-GGATCACTGAGTAT-GG---G---AGGAGA-A---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TTAGG-CCGTTG-TGTATAT----CGTTGT--TATACACAGA-GTTCCCGCTTATC-TAT-GCAGTTGAAT--ATTACATGGG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCAAAACATTTCTAAACATTTATCTTT
gi|3 : AAAAATACACGTACG---TTCTTC---AC-GGACCACTGAACAT-GGCGAG---CG-AGC-T---TTTTTC-A--G-TCATTGC--AATTATACCTGGAA-TTTTACT-AG--CCATCTA------G-ACTCATG-CCTTGGCTTTATAT----CGTCGT--TATACACAGACGTTCC-G-TTATCCTATCACAGTTGAATTCATTACAT-GA-AAAACAACATTCTACCTGTATGTACAG
gi|4 : -CATACGTGTTTCTTCTTCAC-GGATCACTGAATATTGG---G---GGGACC-T---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CT--ATA------GAA-TCAGG-CCGTTG-TGTATAT----CGTGTTAATAAACACAGA-GTTCCC-TTTATC--AA-ATAA-TGAAT--ATT-CAT-GGAAAAAAAA---TCTACCTGTA
gi|5 : AAAAATAC-CGTACG-GTTTCTTC---ACGGGAACACTGAACAT-AG---GAGAAGGAGC-T---TTTTTTCA--GTTCATTGC--AATTATACTAGGAACTTTACCT-AG--CC--CT-------G-A-TCAGGCCCTTTG-TGTATAT----CATgt
gi|6 : cagAC-CGCACG-ATTTCTTC---AC-GGATCGCTGGTGAT-GG---G---CGGAGC-T---TA--CCTACCG-TAATTGT--TATT-TACCTGGAA-TT---CT--G--CC--TTACCAAGGG-A-TCTTG-CTTTTG--ATATAtgaatagggaaccatcatgcgttgaa
gi|7 : aaacccAATAC-CGTACA-GTTTCTTC---TC-GGATCACTGGTTAT-GG---G---CAGAGG-T---TATTCATG--G-TCATTGT--TATT-TACCTGGAA-TT---CT-A-------CTA------G-A-CCAAG-Ccacag
gi|8 : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGAACACTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-CCTTTG-TGTATAT----gctcttgcttttgatatacacggg
gi|9 : TTC---AC-GTATCACCGACTAT-GG---G---AGGAAC-T---TCTTT----------------AATT-TACCTGGAT-TTTACCT-AGACCC--CTA------G-A-TCAGG-CCTTTG-TGTATATATCATATTGT--TATACACAGA-GT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTTCCAGGGCTCTCTGTACTTAAACAATG
Alignments
lowQualScore : 111111 1 1 11 1 1 111
lowQualScore : 3 3 555 2 1 2 444 6666 2 555 1 3 33 2 44 7 3 4 55 55 111111 4 4 4 4 4 9999 6 6 99 8 2 99 0 3 0 3 33 3 0 0 777 1 0
lowQualScore : . . ... . . . ... .... . ... . . .. . .. . . . .. .. ...... . . . . . .... . . .. . . .. . . . . .. . . . ... . .
lowQualScore : 1 1 000 9 0 7 777 3333 7 000 0 6 99 9 66 3 6 0 55 55 555555 0 0 0 0 0 4444 6 7 22 0 5 00 0 2 0 2 88 2 0 0 555 0 7
consensus : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
Reference ( family-2081 ) : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTNGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
gi|1 : AAAAAATAC-CGTACG-GTGTCTTC---AC-GGATCACTGAACAT-GG---G---GGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTATTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCATACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACATTTATCTTTA
gi|10 : ATCATCGGATAT-AG---G---CGGGGC-T---TATCTACA--G-TCATTGTTAGATT-TACGCGGTG-TTTACCTGAG--CA--AGA------T-A-TCAGA-C-CGTTG-TGTAGAT----
gi|11 : AAAATAT-CATATG-GTTTCTTC---AC-GGATCATTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTAC
gi|12 : AAAAAACGC-CGGTCG-GTTTCTTT---AC-AGAGCACTGGTTAT-GG---G---CAGAGC-T---TATCTGTG--G-TCATTG
gi|13 : aAATAC-AGTACG-GTTTCTTC---AC-GGATCGTTGGTTCT-GG---G---CGGAGCATTTATATTTATG--G-TCATTAC--tc
gi|14 : cAAAAAATAC-CGGTCG-GTTTCTTC---AC-GAATCACTGGTTAT-GG---G---CGGAGC-T---TATCTGCA--G-TCAT
gi|15 : aAAAGTAC-TG---A-GTTTCTTC---AC-GGATCACTGATTGT-GG---G---CGGAGC-
gi|16 : ATTTTATACCAAAATTTCCCAAAATTTTCTTAACGTTTATCTTTAatgtggatatagttgatcga
gi|2 : ATAC-CATACG-GTTTCTTC---AC-GGATCACTGAGTAT-GG---G---AGGAGA-A---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TTAGG-C-CGTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACATGGG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCAAAACATTTCTAAACATTTATCTTT
gi|3 : AAAAATACACGTACG---TTCTTC---AC-GGACCACTGAACAT-GGCGAG---CG-AGC-T---TTTTTC-A--G-TCATTGC--AATTATACCTGGAA-TTTTACT-AG--CCATCTA------G-ACTCATG-C-CTTGGCTTTATAT----CGTCGTT-AT--ACACAGACGTT-CCG-TTATCCTATCACAGTTGAATTCATTACAT-GA-AAAACAACATTCTACCTGTATGTACAG
gi|4 : -CATACGTGTTTCTTCTTCAC-GGATCACTGAATATTGG---G---GGGACC-T---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CT--ATA------GAA-TCAGG-C-CGTTG-TGTATAT----CGT-GTTAATAAACACAGA-GTTCCC-TTTAT-C-AA-ATAA-TGAAT--ATT-CAT-GGAAAAAAAA---TCTACCTGTA
gi|5 : AAAAATAC-CGTACG-GTTTCTTC---ACGGGAACACTGAACAT-AG---GAGAAGGAGC-T---TTTTTTCA--GTTCATTGC--AATTATACTAGGAACTTTACCT-AG--CC--CT-------G-A-TCAGGCC-CTTTG-TGTATAT----CATTGgt
gi|6 : cagAC-CGCACG-ATTTCTTC---AC-GGATCGCTGGTGAT-GG---G---CGGAGC-T---TA--CCTACCG-TAATTGT--TATT-TACCTGGAA-TT---CT--G--CC--TTACCAAGGG-A-TCTTG-C-TTTTG--ATATAaatagggaaccatcatgcgttgaa
gi|7 : aaacccAATAC-CGTACA-GTTTCTTC---TC-GGATCACTGGTTAT-GG---G---CAGAGG-T---TATTCATG--G-TCATTGT--TATT-TACCTGGAA-TT---CT-A-------CTA------G-A-CCAAG-CGCTCT--TGCTT--------TTGAT-AT--ACACGGcacag
gi|8 : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGAACACTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----g
gi|9 : TTC---AC-GTATCACCGACTAT-GG---G---AGGAAC-T---TCTTT----------------AATT-TACCTGGAT-TTTACCT-AGACCC--CTA------G-A-TCAGG-C-CTTTG-TGTATATATCATATTGTT-AT--ACACAGA-GT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTTCCAGGGCTCTCTGTACTTAAACAATG
Alignments
lowQualScore : 111111 1 1 11 1 1 111
lowQualScore : 3 3 555 2 1 2 444 6666 2 555 1 3 33 2 44 7 3 4 55 55 111111 4 4 4 4 4 9999 6 99 8 2 99 0 3 0 3 33 3 0 0 777 1 0
lowQualScore : . . ... . . . ... .... . ... . . .. . .. . . . .. .. ...... . . . . . .... . .. . . .. . . . . .. . . . ... . .
lowQualScore : 1 1 000 9 0 7 777 3333 7 000 0 6 99 9 66 3 6 0 55 55 555555 0 0 0 0 0 4444 7 22 0 5 00 0 2 0 2 88 2 0 0 555 0 7
consensus : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
Reference ( family-2081 ) : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
gi|1 : AAAAAATAC-CGTACG-GTGTCTTC---AC-GGATCACTGAACAT-GG---G---GGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTATTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCATACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACATTTATCTTTA
gi|10 : ATCATCGGATAT-AG---G---CGGGGC-T---TATCTACA--G-TCATTGTTAGATT-TACGCGGTG-TTTACCTGAG--CA--AGA------T-A-TCAGA-C-CGTTG-TGTAGAT----
gi|11 : AAAATAT-CATATG-GTTTCTTC---AC-GGATCATTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTAC
gi|12 : AAAAAACGC-CGGTCG-GTTTCTTT---AC-AGAGCACTGGTTAT-GG---G---CAGAGC-T---TATCTGTG--G-TCATTG
gi|13 : aAATAC-AGTACG-GTTTCTTC---AC-GGATCGTTGGTTCT-GG---G---CGGAGCATTTATATTTATG--G-TCATTAC--tc
gi|14 : cAAAAAATAC-CGGTCG-GTTTCTTC---AC-GAATCACTGGTTAT-GG---G---CGGAGC-T---TATCTGCA--G-TCAT
gi|15 : aAAAGTAC-TG---A-GTTTCTTC---AC-GGATCACTGATTGT-GG---G---CGGAGC-
gi|16 : ATTTTATACCAAAATTTCCCAAAATTTTCTTAACGTTTATCTTTAatgtggatatagttgatcga
gi|2 : ATAC-CATACG-GTTTCTTC---AC-GGATCACTGAGTAT-GG---G---AGGAGA-A---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TTAGG-C-CGTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACATGGG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCAAAACATTTCTAAACATTTATCTTT
gi|3 : AAAAATACACGTACG---TTCTTC---AC-GGACCACTGAACAT-GGCGAG---CG-AGC-T---TTTTTC-A--G-TCATTGC--AATTATACCTGGAA-TTTTACT-AG--CCATCTA------G-ACTCATG-C-CTTGGCTTTATAT----CGTCGTT-AT--ACACAGACGTT-CCG-TTATCCTATCACAGTTGAATTCATTACAT-GA-AAAACAACATTCTACCTGTATGTACAG
gi|4 : -CATACGTGTTTCTTCTTCAC-GGATCACTGAATATTGG---G---GGGACC-T---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CT--ATA------GAA-TCAGG-C-CGTTG-TGTATAT----CG-TGTTAATAAACACAGA-GTTCCC-TTTAT-C-AA-ATAA-TGAAT--ATT-CAT-GGAAAAAAAA---TCTACCTGTA
gi|5 : AAAAATAC-CGTACG-GTTTCTTC---ACGGGAACACTGAACAT-AG---GAGAAGGAGC-T---TTTTTTCA--GTTCATTGC--AATTATACTAGGAACTTTACCT-AG--CC--CT-------G-A-TCAGGCC-CTTTG-TGTATAT----CATTGgt
gi|6 : cagAC-CGCACG-ATTTCTTC---AC-GGATCGCTGGTGAT-GG---G---CGGAGC-T---TA--CCTACCG-TAATTGT--TATT-TACCTGGAA-TT---CT--G--CC--TTACCAAGGG-A-TCTTG-C-TTTTG--ATATAaatagggaaccatcatgcgttgaa
gi|7 : aaacccAATAC-CGTACA-GTTTCTTC---TC-GGATCACTGGTTAT-GG---G---CAGAGG-T---TATTCATG--G-TCATTGT--TATT-TACCTGGAA-TT---CT-A-------CTA------G-A-CCAAG-CGCTCT--TGCTT--------TTGAT-AT--ACACGGcacag
gi|8 : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGAACACTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----g
gi|9 : TTC---AC-GTATCACCGACTAT-GG---G---AGGAAC-T---TCTTT----------------AATT-TACCTGGAT-TTTACCT-AGACCC--CTA------G-A-TCAGG-C-CTTTG-TGTATATATCATATTGTT-AT--ACACAGA-GT
blockSeqs : A T TTC G A T CGA AGAA A TTA A A CC T TA A C G AC AT CCAAGG A C C G C ATCA A AA C C GC C T C T TC A G A CAT T
blockSeqs : . . . . A . . C . . T C . . . A . . . . . . . . . . . . . . C G . T . T . A . . .
blockSeqs : . . . . T . . A . . A G . . . . . . . . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . T . . C . . A A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . C . . A G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . C . . C C . . . . . . . . . . . . . . .
blockSeqs : . . . . G . . C . . T C . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . A . . C C . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . C . . T T . . . . . . . . . . . . . .
blockSeqs : . . . . A . . G . . A C . . . . .
blockSeqs : . . . . T . . C . . A A . . .
blockSeqs : . . . . T . . C . . T C . .
blockSeqs : . . A . . A . . C . . .
blockSeqs : C . . A .
blockSeqCons :
originalCons : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
finalCons : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTTCCAGGGCTCTCTGTACTTAAACAATG
Alignments
lowQualScore : 111111 1 1 11 1 1 111
lowQualScore : 3 3 555 2 1 2 444 6666 2 555 1 3 33 2 44 7 3 4 55 55 111111 4 4 4 4 4 9999 6 99 8 2 99 0 3 0 3 33 3 0 0 777 1 0
lowQualScore : . . ... . . . ... .... . ... . . .. . .. . . . .. .. ...... . . . . . .... . .. . . .. . . . . .. . . . ... . .
lowQualScore : 1 1 000 9 0 7 777 3333 7 000 0 6 99 9 66 3 6 0 55 55 555555 0 0 0 0 0 4444 7 22 0 5 00 0 2 0 2 88 2 0 0 555 0 7
consensus : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
Reference ( family-2081 ) : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGATCACTGANTAT-GG---G---CGGAGC-T---TNTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCNTACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACGTTTATCTTTA
gi|1 : AAAAAATAC-CGTACG-GTGTCTTC---AC-GGATCACTGAACAT-GG---G---GGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----CGTATTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACAT-GG-AAAAAAA---TCTACCTGTATGTACAGGCATACTGCGATTTTACTACTTTCGATCATTTTATACCAAAATTTCCCAAAATTTTCTAAACATTTATCTTTA
gi|10 : ATCATCGGATAT-AG---G---CGGGGC-T---TATCTACA--G-TCATTGTTAGATT-TACGCGGTG-TTTACCTGAG--CA--AGA------T-A-TCAGA-C-CGTTG-TGTAGAT----
gi|11 : AAAATAT-CATATG-GTTTCTTC---AC-GGATCATTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTAC
gi|12 : AAAAAACGC-CGGTCG-GTTTCTTT---AC-AGAGCACTGGTTAT-GG---G---CAGAGC-T---TATCTGTG--G-TCATTG
gi|13 : aAATAC-AGTACG-GTTTCTTC---AC-GGATCGTTGGTTCT-GG---G---CGGAGCATTTATATTTATG--G-TCATTAC--tc
gi|14 : cAAAAAATAC-CGGTCG-GTTTCTTC---AC-GAATCACTGGTTAT-GG---G---CGGAGC-T---TATCTGCA--G-TCAT
gi|15 : aAAAGTAC-TG---A-GTTTCTTC---AC-GGATCACTGATTGT-GG---G---CGGAGC-
gi|16 : ATTTTATACCAAAATTTCCCAAAATTTTCTTAACGTTTATCTTTAatgtggatatagttgatcga
gi|2 : ATAC-CATACG-GTTTCTTC---AC-GGATCACTGAGTAT-GG---G---AGGAGA-A---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TTAGG-C-CGTTG-TGTATAT----CGTTGTT-AT--ACACAGA-GTTCCCGCTTAT-CTAT-GCAGTTGAAT--ATTACATGGG-AAAAAAA---TCTACCTGTATGTACAGGCTTACTGCGATTTTACTACTTTCGATCATTTTATACCAAGATTTCCAAAACATTTCTAAACATTTATCTTT
gi|3 : AAAAATACACGTACG---TTCTTC---AC-GGACCACTGAACAT-GGCGAG---CG-AGC-T---TTTTTC-A--G-TCATTGC--AATTATACCTGGAA-TTTTACT-AG--CCATCTA------G-ACTCATG-C-CTTGGCTTTATAT----CGTCGTT-AT--ACACAGACGTT-CCG-TTATCCTATCACAGTTGAATTCATTACAT-GA-AAAACAACATTCTACCTGTATGTACAG
gi|4 : -CATACGTGTTTCTTCTTCAC-GGATCACTGAATATTGG---G---GGGACC-T---TCTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CT--ATA------GAA-TCAGG-C-CGTTG-TGTATAT----CG-TGTTAATAAACACAGA-GTTCCC-TTTAT-C-AA-ATAA-TGAAT--ATT-CAT-GGAAAAAAAA---TCTACCTGTA
gi|5 : AAAAATAC-CGTACG-GTTTCTTC---ACGGGAACACTGAACAT-AG---GAGAAGGAGC-T---TTTTTTCA--GTTCATTGC--AATTATACTAGGAACTTTACCT-AG--CC--CT-------G-A-TCAGGCC-CTTTG-TGTATAT----CATTGgt
gi|6 : cagAC-CGCACG-ATTTCTTC---AC-GGATCGCTGGTGAT-GG---G---CGGAGC-T---TA--CCTACCG-TAATTGT--TATT-TACCTGGAA-TT---CT--G--CC--TTACCAAGGG-A-TCTTG-C-TTTTG--ATATAaatagggaaccatcatgcgttgaa
gi|7 : aaacccAATAC-CGTACA-GTTTCTTC---TC-GGATCACTGGTTAT-GG---G---CAGAGG-T---TATTCATG--G-TCATTGT--TATT-TACCTGGAA-TT---CT-A-------CTA------G-A-CCAAG-CGCTCT--TGCTT--------TTGAT-AT--ACACGGcacag
gi|8 : AAAAAATAC-CGTACG-GTTTCTTC---AC-GGAACACTGAACAT-GG---G---AGGAGC-T---TTTTTCTA--G-TCATTGC--AATT-TACCTGGAA-TTTACCT-AG--CC--CTA------G-A-TCAGG-C-CTTTG-TGTATAT----g
gi|9 : TTC---AC-GTATCACCGACTAT-GG---G---AGGAAC-T---TCTTT----------------AATT-TACCTGGAT-TTTACCT-AGACCC--CTA------G-A-TCAGG-C-CTTTG-TGTATATATCATATTGTT-AT--ACACAGA-GT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGTTCCAGGGCTCTCTGTACTTAAACAATG