lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 111 11111 33333333333333333333333333333333 1 666666666666666666666666666 111111 11 5555555555555555555555555555555 22222222222222 111 111111 11111111 1 2222 1 1 33 11 2222222222 222 1 222 22 9999999999 11 444444444 1 4444444 1 1 222 33 333333333333 2222 11 1 11 1 1 1 1 1 2 1 2 1 1 11 11 1 11 33333 1 1 111111 1 22 1 5555555555 1 2222 1 1 2222 1 1 1 2222 2222222222 3333333 1 1 333333333333 444444444 222 1 1 1 33 222 1 1 2 1 333 44444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 1 11 2 33333333333 9999999999999999999 2 1 1 22222222 1 444444444 55555555555 1111 8888888888888888888888888888888 111 1111111 1111111111 1111111111 11111111 22222222222222 11111 1111111111 11
lowQualScore : 777 44 000 5 3 00000 6 3 3 3 3 77 4 33333333333333333333333333333333 6 33 5 66 2 5555 3 66666 66 33 4444 3 111111111111111111111111111 111111 44 555 22 3 3 3 44 3 55555 2222222222222222222222222222222 4 5 0 33333333333333 5 000 6 6 6 3 22 88 111111 88888888 0 6 2222 4 3 3 11 7 33 8888888888 333 3 444 33 7777777777 3 0 88 333333333 3 0 3333333 3 8 3 7 333 7 7 00 999999999999 6666 6 3 88 7 3 88 3 6 3 3 3 3 0 7 0 3 3 88 7 88 3 11 6 00000 3 3 333333 7 3 00 3 5555555555 3 7777 3 0 1111 0 0 0 1111 22 2222222222 2 0 2222222 0 2 0 3 777777777777 999999999 4 444 999 5 5 2 5 00 88 999 5 7 0 5 111 88888888888 2 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 6 5 22 0 99999999999 9999999999999999999 4 0 5 5 88888888 5 000000000 99999999999 2222 0 9999999999999999999999999999999 777 7777 3 6666666 3 3 44 6 3333333333 2 1111111111 2 2 2 00000000 55 2 55555 0 2 2 2 1 1 1 44 1 1 66666666666666 22 22 333 99999999 1 44 22 44444444 3 1 22 1 1 44 1 22 33333 1 1 1 1 22 44 333 55 0000000000 2 4 11 2
lowQualScore : ... .. ... . . ..... . . . . . .. . ................................ . .. . .. . .... . ..... .. .. .... . ........................... ...... .. ... .. . . . .. . ..... ............................... . . . .............. . ... . . . . .. .. ...... ........ . . .... . . . .. . .. .......... ... . ... .. .......... . . .. ......... . . ....... . . . . ... . . .. ............ .... . . .. . . .. . . . . . . . . . . . .. . .. . .. . ..... . . ...... . . .. . .......... . .... . . .... . . . .... .. .......... . . ....... . . . . ............ ......... . ... ... . . . . .. .. ... . . . . ... ........... . .......................................................................................... ... . . .. . ........... ................... . . . . ........ . ......... ........... .... . ............................... ... .... . ....... . . .. . .......... . .......... . . . ........ .. . ..... . . . . . . . .. . . .............. .. .. ... ........ . .. .. ........ . . .. . . .. . .. ..... . . . . .. .. ... .. .......... . . .. .
lowQualScore : 000 66 555 2 3 99999 2 1 1 1 1 33 9 00000000000000000000000000000000 7 77 3 33 7 7777 3 77777 99 77 6666 3 888888888888888888888888888 666666 22 444 77 1 1 1 22 1 11111 8888888888888888888888888888888 4 0 4 88888888888888 7 000 7 0 7 5 77 33 222222 22222222 0 7 7777 7 3 3 77 3 33 3333333333 333 3 333 00 5555555555 0 7 33 333333333 3 7 3333333 3 3 3 3 333 3 3 33 000000000000 7777 0 7 33 3 3 33 3 7 3 3 3 3 0 0 0 3 3 33 3 33 3 00 7 77777 3 3 777777 3 3 77 3 0000000000 3 0000 3 0 2222 0 0 0 2222 88 8888888888 2 8 5555555 0 5 0 2 222222222222 333333333 0 000 000 5 0 5 0 55 55 000 5 0 0 0 555 55555555555 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 5 00 0 55555555555 0000000000000000000 0 0 0 0 55555555 0 000000000 55555555555 2222 6 9999999999999999999999999999999 555 7777 6 5555555 3 3 66 7 5555555555 9 0000000000 7 7 8 88888888 99 5 55555 8 5 5 4 9 9 8 33 8 8 88888888888888 44 44 000 88888888 7 11 55 33333333 3 7 33 7 7 11 7 44 66666 8 8 9 9 88 88 999 66 3333333333 4 7 22 4
consensus : CGCTAATG---CAAA--AAC--TTA-TAT---C-ATTAA-TGA-TG-CA-CCAT-CA--TAACCA--N--TN--A-TG-----AT-A--------AA-T--C-GTT--CG-C----TAATG-A-----AAAACTT-TT-TT-CA-TTA--AAG-----ACA--------------GAC-G-A--A--T---CGT--CCA-TT-A-AT--GAT-AAAACTTGAA--AT-TGGAAATT-ATGCGCA-GTGTCGT--CC-ACTAATGATAAA-AAA------AATGA---AA-A---TGTAT-TAGCGG-ATGAATTTCACATTT-ATTA--AT--GA---TATT-CTTGAA-TTTAATATGA--T-TAACANCAA-TGGAGGC-GCTTT-CATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AAGTAANCAATTTTAAAAATTTAAANAATATATT--AGAACT-AT-C-T-TTGT-ATTAATCTTTT-CGAGTCCTA-CAAATG-ATTTATTT---TGTAATATCCGT--TTGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACGGAAANGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GCTGGCATAGTTCCTTTGAAAATAAGC-AA-GT--AGTAT--GAA-ATANCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----ANCAATTGTTT--TTTATTTTTTTCTTTA-------TAC-GTATAAACTGCAA-ATAATTCAAAG---TC-------TATGTTGTG-GTGTCCTTTCCTTNACGNAGATTGCTAAGGGTCACACCTNTTGAGGGTANCACTGANTTATATAANAACACAATTTGTATTAAAGTGAGAGAAAGCCANTGTGGTATGGAGTTGNGNTGATGCAGNGTGGCTATGAGAGNACAAATTTGCACCCAAACACACCCCCCCCCTNCCCACANCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCNTNGTTTATTAAATACAGCCTCTCAAATANATTGGGGAAGAGAA-TAAGGAATGTCTGTCGTCCNTATCATGCATATCGTTTCCTCCATGCACGAAGGANAGTTATCGGTAGAGANTTCTCGTCGCATGGTGATAGTGATCAAATTTCCTTT--C-TCATT----TT-C------------------TT---TTA---TTTTTT----C-ATTA----GC-G-A-A--C-G----------A-TT-T--A-----TCA-T-TAATG--G-----TT--AT-GA--T--GGT-GC-A-TC-A-T-T--AA-T-G---AT-ATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-----T-GC-AT--T-CGT-TAA--T-G--CAAAA---TNT-ATC-ATT-A-G--T--GG---ATT--T----------T-AT-ATCA--TTA-ATGGTTGC
Reference ( gi|3 ) : CGCTAATG---CAAA--AAC--TTA-TAT---C-ATTAA-TGA-TG-CA-CCAT-CA--TGACCA--A--TT--A-TG-----AT-A--------TA-T--C-GTT--CG-C----TAATG-A-----AAAACTT-TT-TT-CA-TTA--AAG-T---CCA--------------GAC-A-A--A--T---CGT--CCA-TT-A-AT--GAT-AAAACTTGAA--AT-TGGAAATT-ATGCGCA-GTGTCGT--CC-ACTAATGATAAA-AAA------AATGA---AA-A---TGTAT-TAGTGG-ATGAATTTCACATTT-ATTA--AT--GA---TATT-CTTGAA-TTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT--CATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A-GTAAA-AATT--AAAAA---AAAAAATACATT--AGAACC-ATAT-T-TTGT-ATTAATCCTTT-CAAACTCTA-CAAAAG-ATTTATTT---TGTAATATCCGTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTG----ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTTATCCTTTTTTTTA-------TAC-GTATAAACTGCAA-ATAATTCAAAG---TC-------TATGTTGTG-GGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG----GA-TT-TGGTGATG-A-T-TGGCT----GAGC-TAA--------CCAAAT----------CTTACCC-CACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAA--AAATT-G--AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAGACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--C-TCATT----TT-C------------------TC---TTA---TTTTTT----C-ATTA----GT-G-A-A--C-G----------A-TT-T--A-----TCA-T-TAGTG--G-----TT--AT-GA--T--GGT-GC-A-TC-A-T-T--AA-T-G---AT-ACAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-----T-GC-AT--T-CGT-TAA--T-G--CAAAA---TGT-ATC-ATT-A-G--T--GG---ATT--T----------T-AT-ATCA--TTA-ATGGTTGC
gi|2 : CGCTAATG---CAAA--AA---TTG-TAT---C-ATTAA-TGA-TG-CA-CCAT-CAA-TAACCA--T--TA--A-TG-----AT-A--------AA-T--C-GTT--CG-C----TA-TG-A-----AAAACTT-TT-TTTCA-TTA--AAG-G---ACA--------------GAC-A-A--A--T---TGT--CCA-TTTA-AT--GAT-AAA-CTTTAA-----TGGAAATT-ATGCACA-GTGTCGT--CC-ACTA-TGATAAATAAA------AATGA---AATA---TGTAT-TAGTGGGATGAATTTCACATTTTATTA--AT--GA----AT--CTTGAA-TTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTT-CATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAACA-GTAAC-AATT-------TTTAAAAAATATATT--AGAACT-AT-C-T-TGGT-ATTAAGCTTTTGCGAGTCCTA-CAAATG-ATTTATTT---TA-AATATCCTTGGTTGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--T-ATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGC-AAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATTG----ATTTGAATTA-TTAACCG--AGTT-TTTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTTATCA--TGTTTTA-------TAC-GTATAAA-TGCAAGATATTTCAAAA---TC-------TATGTTGAGTGTGT---TTCCTTAAAGAAA-TTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG----GAGTT-GGGTGATGCA-G-TGGCT----GAAG-T----------CCAAAT----------CTTACCCATAGTCCCG-G-------------A-AA-A-A--AA-CCGCGTGGTTTATT-AATACAGCCTCTCAAATAGATTGG--AAGAGAA-----GAA-ATCTG---TCCATAT-ATGCATATCGTTT-CTCCATGCACGA-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-G--AG-----AAAATTCCTTT--C-TCCTT----TT-CCGGTTTTTTTTTTTTTTTTT---TTATTTTTTTTT----C-ATTA----GA-G-A-A--CTG----------ATTT-T--A-----TCA-TCTAATG--G-----TA--AG-GA--T--GGT-GT-A-TC-A-T-T--AATT-A---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-----TGGC-AT--T-CGT-TAA----G--CAAAA---TTT-ATC-GAT-A-G--T--GG---ATT--T----------TCAT-ATCAG-TTA-ATGGTTGC
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttCGCTAATG---CAAA--AAC--TTATTAT---TAATTAA-TGA-TA-CA-CCAT-CC--TTACC---A--TTAGA-TG-----ATAA--------AA-T--CAGTT--CT-C----TAATG-A-----AAAAtacaggcccttatccgtttctaacgtcacaattca
gi|1 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttattttCGCTAATAGATCAGACAAACCTTTA-TAT---CTATTAA-TGA-TGGCAACCATGTAATTAAACAC-A--TT--AATG-----AT-A--------AAAT--CTGTTA-CGGC----TAATGTA-----AAAACTT-TT-TA-CA-TTA--AAGGT---ACA--------------GACGA-A--A--T---CGT--CCAATT-A-AT--GATTAAAACTTTAA--AT--GGAAATTTATGCACAAGTGTCGT--CT-ACTAATGATAAA-AAA------A-TGACACAA-A---TGTAT-CATAAG-A-GAATTTT-CATT--ATTA--GTTTGAGTGCATT-CGTGAA-TTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AAGTAAACAATTTTAAAAAT--AAACAATATATTTTAGAACTTATACCT-TTGT-ATTAATCTTTTTCGAGTCCTA-CAAATG-CATTATTTATGTGTTATATCCGTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAATAAA--TTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAA-GTGTAGTATTAGAACATATCACT-TTGTCAT-ATATAA-GTCGAAAATCA-AA-T-TTGCT-GAATTT-ATTCTA-TTAGTATTGTA--ATT---ATTA-TTAAA-AGAAGTTATT-AAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-----TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTAC-ACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGA-TTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCC-C-CCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCC-TGTTTATTAAATACAGCCTC-CAA--ACATT-GGGAAGAG---TAAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAAGGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGAC-TCCTT----TTAC------------------TCGATTTA---TTTTTT----C-ATTA----GA-A-A-A--C-G----------A-TT-T--ATGGATTCACT-CAATGACG-----TTA-AT-GA--T--GGT-GT-A-TC-ACT-T--AA-T-AGTTAT-ATAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC--AG-----T-GA-AT--TCCGT-TAATCT-G--CAAAA---TTT-CAC-ATT-A-G--T--GG---ATT--T----------T-AT-ATCC--TAA-ATTGTTGCaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|4 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcCGCTAATG---CAAA--AAC--T-A-TAA---C-ATTAA-TGA-TG-CA-C-AT-CA--TGAC----A--TT--AATG-----AA-G--------AA-T--C-GTT--CG-CGAAATAATG-A-----AAA--CT-TT-CT-CA-TTACGAA-------CA--------------GAC-G-A--A--T---CGT--CCA-TT-A-AT--GAT-AA--CTTGAA--AAATGGAA-TT-AT-CACA-GTTCCGT--CCCACTAATGATAAA-AAT--------TGA---AA-A---TGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC-CCTT--CAT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAA-tcacacaccactt
gi|6 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttCGCTAATG---CAAA--AAC--TTA-TAT---C-ATTAA-TGA-TG-CA-CCAT-CA--TAACCA--C--TA--A-TG-----AA-G--------AA-T--C-GTT--CG-C----TAATGAA-----AAAACTT-taaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|13 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataacaaacattaatgatataaaatccactaatgagaaatgttgcattaacgaatgcatttgcgttCGCTAATG---CAAA--AAC--TTA-TAT---C-ATTA----A-TG-CA-CCAT-CA--TAACCA--T--TA--A-TG-----AT-
gi|5 : tgcttaatcatgaaacgtgtgtagcaaccaataaactccactaatgacaacttttgcattaacgaatgcatttgcgatCGCTGATG---CAAA--AA---TTA-TTT---A-ATTAA-TGA-TG-CA-CCAT-CC--TAACCG--T--TC--A-TG-----AT-ACACATCTGTA-TAGC-GCT--CA-A----TAATG-ATCAAAGAAA--------T-AA-TTC--GAG-T---ACA--------------GAC-G-A--A--T---CAT--CCA-TT-A-AT--GAT-AAAA----AA-------GAA---------------------CC-A---ATGTTAAA-A-----------------A-A---TATAT-AAGTGT-ATGAATTTGACATTT-ATCA--GC--AA---TATT-CTTAAA-TTtaat
gi|15 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttCACTAATG---AAAA--AAA--T-A-TAC---C-ATTAA-TGG-TG-CA-TCAT-CA--TAA
gi|9 : tcgtttgcgatCGCTGATG---CAAA--AA-----A-CAT------TTAAATGA-TG-CA-CAAT-CA--TGACCA--T--TA--A-TG-----AT-G--------CAAT--C-GTTTTCG-C----TAATG-A-----AAAACTT-TT-TT-CATTTA--GAG----------------------GAC-A-ATGAATT---CG---CCA-TT-A-ATTGAAT-AAAACTTGAA--AT-aaaataaatgcattcgttaatgcaatatttatcatcagtggattttatattattagtggtt
gi|10 : aaccatctaaattgatataaaatccactaattgataaatttttgcagttgcgttCACTAATG----ATA--AAT--TT--TG----C-ATTAA-CGAATG-CA----T-CA--TAACCA--T--TA--A-TG-----AT-A--------AA-T--C-GTT--CG-C----TAA
gi|1 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaatcAA--AAC--TTA-TATAACT-ATTAAGTGA-TA-CA-CCAT-CA--TTAACGTCA--TTGAG-TGAATCCAT-A--------AA-T--C-GTT--TT-C----TAATG-A-----AAAA
gi|16 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttccgctaatagatcagacaaacctttatatctattaatgatggcaaccatgtaattaaacacattaatgataaaatctgttacggctaatgtaaaaactttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttatA--AAC--T-A-TAT---C-GTTAA-TGA-TG-CA-TCAT-CA--TAA----------------------------------A-T--C-GTT--CG-C----TAATG-G-----GAAAC---CT-TT-CA-TTA--GAG-A---ATA--------------GAC-G-AT-A--T----GT--ACA-TT-A-AT--GAT-AAAAA--GAA--AT-Taattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|6 : -ATTAA-TG--TG-C---CAT--A--TAACAA--ACATT--AATG-----AT-A--------TA-A--A-ATC--CA-C----TAATG-A-----GAAA--T-GT-TG-CA-TTA--A--------CG--------------AAT-G-C--A--TTTGCGT--TCG-CT-A-AT--GCA-AAAACTTATATCAT-T---AATG-ATGCAC---CATCATAACC-ACTAATGA
gi|10 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaACCA--T--TA--A-TG-----AT-A--------TA-A--A-ATC--CA-C----TAATG-A-----TAAA--T-TT-TG-CA-TTA--A--------CG--------------AAT-G-C--A--T---CATAACCA-TT-A-AT--GAT-AAAagaatcgttcgctaatgaaaaaactt
gi|2 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagca--C-GTT--CG-C----TAATGCA-----AAAACTTATTATT-AA-TTA--ATG-------A--------------TAC-ACC--A--T---CCTTACCA-TT-AGAT--GAT-AAAAT------------------------CA-GT----T--CT--CTAATGA-AAA-AAA------AATAA---AA-A---tcgttcgctaa
gi|6 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttt--C-GTT--CG-C----TAATGCA-----AAAACTT-AT-AT-CA-TTA--ATGATGCACCATCATAACCACTAATGAA-G-A--A--T---CGT--TCG-CT-A-AT--GAA-AAAACTTcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|13 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataacaaacattaatgatataaaatccactaatgagaaatgttgcattaacgaatgcatttg--C-GAT--CG-C----TAATGCA-----AAAACTT-AT-AT-CA-TTA--ATG-CA--CC------------------------A--T---CATAACCA-TT-A-AT--GAT-TAA
gi|11 : tgcttaatcatgaaacgtgtgtagcaaccaataaactccactaatgacaacttttgcattaacgaatgcatttg-A-----AACACAT-TT-AT-CA-TCA--GGG-G---AAA--------------GAC-A-A--G--T---CGT--TCA-TA-A-AT--AAT-AAAAATTGCG--AG-AGGAATAT-ATGTACA-GTGTCAT--CC-ACTAATGAT----ATA------AATGAC--AA-A---TGTAT-TTG-GG-AAGAATTTTACATTT-ATCA--t
gi|16 : aaaAT-A-A--A--T---CGT--TCG-CT-A-AT--GGG-AAACCTTTCA---T-TAGAGAAT-AGACG---ATAT-GT--AC-ATTAATGATAAA-AAG------AAtta
gi|10 : aaactatatcgttaatgatgcatcatcTGTGCA-TTGTAGCAACC-ATTAATGATATA-AAATCCACTAATGAT--AA-ATTTTGCAT-TAACGA-ATGCA--TCATAACC-ATTA--AT--GA---TAatt
gi|4 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggCGTC--AGAATA-ACCT-TCTTGTTATCAATACTTT-TGAG-TCTAACAAAAGAATTTA-TT---TGTAA-ATCCGT--TTGTTGTCA-GAA----AGT-TTGTTaatcgttcgctaa
gi|4 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttcgctaatgcaaaaactataacattaatgatgcacatcatgacattaatgaagaatcgttcgcgaaataatgaaaactttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagcTTTTCTTTC-A--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-TACA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|7 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttcgctaatgcaaaaactataacattaatgatgcacatcatgacattaatgaagaatcgttcgcgaaataatgaaaactttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttg-AA-GT--AGTAT--TAA-ATAACATTCTTGTCAT-T-A-AA-GTCGAAT-TCC-CACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAAA-G--AGTA-TT-AAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATGATTTTTTTCTCTA-------TAC-GTATAAACTGCAA-ATAATTCAAAG---TC-------TATTTTG
gi|14 : T-AAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TATGATTTTTTCTGTA-------TAC-GTATAAACTGTAA-ATAATTCAAAG---TA-------TATGTTGTG-GTGTCC
gi|16 : AATTTCTTTT--TATCATTAATGTA-CA-----------------TA---TCG---TCTATT----C-TCTA----AT-G-A-A--A-G----------G-TT-T--C-----CCA-T-TAGCG--AACGATTT--AT-GA--T--GAT-GC-A-TC-A-T-T--AA-C-G---AT-AT-A--GTTT--cgtaggggggttac
gi|8 : TCTCCTTT--C-TCATT----AT-G------------------TT---TTAACCCCCTTT----G-ATAAAAA-GG-G-ACA--C-G----------G-TC-GCAA-----CCA-T-TAATG--A-----T---AT-GA----------A-A-TCTA-C-T--AA-C-G---AT-ATA-----TT--T--TG---CA--------TTAA-C----------A-AA-----T-GC-AT--T-TGC-TGA--T-G--CAAAAAT-TGA-ATC-AT
gi|8 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTT--C-CAATT----TT-T------------------TT---TTA---TTTTTT----TTATTA----GG-G-G-A--T-A----------A-TT-T--A-----TTA-T-TAATG--G-----TT-----------------C-A-TG-A-T-T---------------CAA---TTT--T--TG---CA--------TCAG-C----------A-AA-----T-GC-AT--T-TGT-TAA--T-G--CAAAA---TAT-ATC-GTT-A-G--T--AG---ATT--T----------C-AT-ATCA--TTA-ATGGTTGC
gi|5 : ---TTA---TTTCTTTGATC-ATTA----TT-G-A-G--C-GCTATACAGATG-TG-T--A-----TCA-T-GAACG--G-----TT--AG-GA--T--GGT-GC-A-TC-A-T-T--AA-T-T---AA-ATAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGT-AA-----T-GC-AT--T-CGT-TAA--T-G--CAAAA---TTT-ACC-AAC-A-G--T--GG---ATT--T----------T-AT-ATCA--GTA-ATTGCTGCgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|1 : tttaaaaacatttttaaaaaagctcaacatgtgta---TTTTTA----C-ATTA----GCCGTA-A--CAG----------A-TT-TT-A-----TCA-T-TAATGT-G-----TTTAAT-TACAT--GGTTGCCA-TC-A-T-T--AA-TAG---AT-ATAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCG-AGAGAGTC-GC-AT--T-CGT-TAA--T-G---AAAA---TGTGAGC-ATTAA-G--CG-GG---ATT--TGGGTGTTAGAT-AT-ATTA--TTA-ATGttcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : ---TTTTTT----C-ATTA----GC-G-A-A--C-G----------A-TT-C--T-----TCA-T-TAGTG--G-----TT--AT-GA--T--GGT-GC-A-TC-A-T-T--AA-T-G---AT-ATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-----T-GC-AT--T-CGT-TAA--T-G--CAACA---TTT-CTC-ATT-A-G--T--GG---ATT--T----------T-AT-ATCA--TTA-ATGTTTGctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|2 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataaTTTTT----C-AT-A----GC-G-A-A--C-G----------A-TT-T--A-----TCA-T-TAATG--G-----TT--ATTGA--T--GGT-GC-A-TC-A-T-T--AA-T-G---AT-ACAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-------GC-AT--T-CGTGTAA--T-G--CAAAA---TTT-ATC-ATT-ACG--T--GG---ATT--T----------T-AT-ATCA--TTA-ATctt
gi|9 : TTTTT----C-ATTA----GC-G-A-AAAC-G----------A-TTGC--A-----TCA-T-TAATG--G-----TC--AT-GA--T--TGT-GC-A-TC-A-T-TTAAA-T-G----T--------TTT--T--TG---CA--------TCAG-CG--AAC--GCA-AC-----T-GC-A--------------------AAAA---TTT-ATCAATT-A-G--T--GG---ATT--T----------T-AT-ATCAATTTAGATGGTTctttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT----C-ATTATTTCGC-G-A-A--C-G----------A-TT-C--T-----TCA-T-TAATG--------TC--AT-GA--T--G-T-GC-A-TC-A-T-T--AA-T-G---TT-ATA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCA-AA-----T-GC-AT--T-CCT-TAAT-T-G--C-AAA---TTT-ATC-AGT-A-GGTT--GG---GTT--T----------T-AT-ATCA--TTA-cttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
gi|10 : TTA----GC-G-A-A--C-G----------A-TT-T--A-----TCA-T-TAATG--G-----TT--AT-GA-------T-GC-ATTC-G-T-T--AA-T-G-------CAA--AATT--T--AT---CA--------TTAG-TG--GActttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|13 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa----------A-TT-A--A-----TCA-T-TAATG--G-----TT--AT-GA--T--GGT-GC-A-T------T--AA-T-G---AT-ATAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCA-AA-----T-GC-AT--T-CGT-TAA--T-G--CAAAA---GTT-GTC-ATT-A-G--T--GG---AGT--T----------T-AT------------TGGTTGC
gi|16 : tgcttaatcatgaaacgtgtgta-TT-T--A-----TCA-T-TAATG--T-----AC--AT--A--T--CGT-CT-A-TT-C-TCT--AA-T-G---A----AA--GGTT--T--CC---CA--------TTAG-CG--AAC--G---------------AT--T-TA--TGA--T-G------A---TGC-ATC-ATT-A-
gi|12 : aaactatatcgt-T-TTGCG--A-----TT--AT-GA--TATGAT-GC-A-CC-A-T-TT-AA-T-G---GT-ATA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACA-AA-----TTGC-AT----CGT-TAA--TTG--CATA----TTT-ATC-ATC-A-G--T--GG---ATT--T----------T-TT-ATTAT-TTT-ATGGTTGCaagaaatt
gi|15 : tatccattgaaaaatcgag-----TT--AT-GA--T--GAT-GC-A-CC-A-T-T--AA-T-G---GT-ATA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATA-AA-----T-GC-AT--T-CGT-TAA--T-G--CAATA---TTT-ATC-ATC-A-G--T--GG---ATT--T----------T-AT-ATTA--TTA-GTGGTTt
gi|17 : tcgtttgcgat-TC-A-T-T--AA-T-G---AT-ATA-----TT--T--TG---CA--------------A--AAC--G-A-AT-----T-GC-AT--T-TGC-T
gi|6 : tgcacttaggcgagC-A-C-T--AA-T-G---AG-A-AA----TG--T--TG---CA--------TTAA-CG--AAT--GCA-TT-----T-GC-GT--T-CGC-TAA--T-G--CAAAAACTTAT-ATC-ATT-A-A--T--Gggatttattaatcaatttaggttgct
gi|13 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataacaaacattaatgatataaaatcC-A-C-T--AA-T-G---A---CAA---CTT--T--TG---CA--------TTAA-CG--AAT--GCA-TT-----T-GC-GA--T-CGC-TAA--T-G--CAAAAACTTAT-ATC-ATT-A-A--T--GC---ACCA-T----------C-ATAACCA--TTA-ATGATTatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|15 : tgcttaatcatgaaacgtgtgtagcaaccaataaactcC-A-C-T--GA-T-G---AT-A-AA----TA--T--TG---CA--------TTAA-CG--AAT--GCA-TT-----T-AT-TT--T-CAC-TAA--T-GAAAAAAA---TAT-ACC-ATT-A-A--T--GG-----T--G----------C-ATCATCA--TAA-ATaat
gi|10 : tcgtttgcgC-A-C-T--AA-T-G---AT-A-AA----TT--T--TG---CA--------TTAA-CG--AAT--GC---A-----T--C-ATAAC-CAT-TAA--T-G--ATAAA---Tgattttatattattagtggtt
gi|4 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaatc-T--AC-T-G---AT-A-AA-----T--T--TG---CAA-------TTAA-GG--AAT--GCA-TT-----T-GC-GT--T-CGC-TAA--T-G--CAAAAAC-TAT-AAC-ATT-A-A--T--GATGCACA--T----------C-AT-GACA--TTA-ATGcgttcgctaa
gi|5 : ttaatgatataaaacccaaccTT--T--TG---CA--------TTAA-CG--AAT--GCATTA-----C--C-GT--T-CGC-TGA--T-G--CAAAAAT-TAT-TTA-ATT-A-A--T--Gaagaatcgttcgcgaaataatgaaaactttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|17 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaa--TG---CAC-------TTAGGCG--AGA--GCA-AA-----T-GCAAT--T-CGT-T-T--T-G--CAAAA---TAT-ATC-ATT-A-A--TGAGG---ATTTAT----------T-A--ATCAATTTA---GGTTGCatgcaccatcctaaccgttcatgatacacatctgtatagcgctcaataatgatcaaagaaataattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|11 : CA-AA-----T-AC-AT--T-TGT-CAT--T------------TAT-ATC-ATT-A-G--T--GG---ATt
gi|10 : aaaaaacacatttatcatcaggggaaagacaagtcgttcataaataataaaaattgcgagaggaatatatgtacagtgtcA-----T-GC-AT--T-CGT-TAA--T-G--CAAAA---TTT-ATC-ATT-A-G--T--GG---ATT--T----------T-AT-ATCA--TTA-ATGGTTGCggaagaattttacatttatcatta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 22222 1111111111111111 11 1111 11111 11 11111 22222222 1 11 1111 1111 1 111 1 11 111 111 1 555555555555555555555555555555555 11 2222222 2 1 22222 11 11 22222222 1 11 11 1111 1 1 1 1 1 2 2 2 11 11 1 1 111 1 1 1 1 1 11 1 22222 222 1 11111 1 1 1111 1111 11 1111 111 111 11 1 1 22 22 2 333 3333 1 22 44444 2222222222222222222 3333333333 4444 4444444444444 1 11 222 2 22 3333 33333333333333 22 2 1 33 111 333 44444444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 22222 66 5 5 5 1 7777 66 5555555555555555 5 5 11 5 0000 4 2 777 66 1 99999 4 8 66 4 4 66 4 22 5 99 3 55 3 6 6 99 6 8888 66666 3 33333333 6 6 3 6 3 1 6 99 11 7777 88 8 3 4444 1 0 444 3 0 3 55 33 2 777 777 0 555555555555555555555555555555555 1 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 2 1 7 33 4444 0 2 0 0 0 0 3 3 0 33 3 33 0 44 2 0 111 0 0 0 2 0 3 0 33 0 99999 000 0 44444 0 0 7777 8 8 8 7777 1 11 7777 44 444 8 8 0 444 11 8 8 33 2 0 1 6 1 2 7 6 1 0 00 1 44 7 3 6 111 6666 5 77 1 66666 8888888888888888888 8888888888 1 1111 7777777777777 5 88 7 222 7 3 22 1 5555 99999999999999 11 1 3 6 5 0 1 00 6 555 777 44444444444 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 33 1 2 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ..... .. . . . . .... .. ................ . . .. . .... . . ... .. . ..... . . .. . . .. . .. . .. . .. . . . .. . .... ..... . ........ . . . . . . . .. .. .... .. . . .... . . ... . . . .. .. . ... ... . ................................. . . . .. ....... . . . . . . ..... . .. .. ........ . .. . . . .. .... . . . . . . . . . .. . .. . .. . . ... . . . . . . . .. . ..... ... . ..... . . .... . . . .... . .. .... .. ... . . . ... .. . . .. . . . . . . . . . . .. . .. . . . ... .... . .. . ..... ................... .......... . .... ............. . .. . ... . . .. . .... .............. .. . . . . . . .. . ... ... ........... . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . .. . . . . . .. .. .......... . .. .. .
lowQualScore : 777 99 11111 44 7 0 0 4 8888 99 9999999999999999 0 0 99 0 6666 4 8 333 11 3 44444 4 9 11 4 4 11 4 66 0 00 2 88 3 7 7 22 7 0000 77777 5 55555555 7 7 2 7 5 7 7 22 00 8888 88 0 0 8888 0 0 555 2 0 2 00 88 5 555 555 0 555555555555555555555555555555555 0 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 0 0 0 88 8888 0 5 0 0 0 0 7 7 0 88 2 88 0 22 5 0 000 0 0 0 5 0 2 0 22 0 22222 222 0 88888 0 0 0000 0 0 0 0000 0 00 0000 00 000 0 0 8 000 00 0 0 55 5 5 0 7 0 0 3 7 0 7 77 0 77 3 7 7 333 0000 0 33 0 00000 3333333333333333333 5555555555 0 0000 0000000000000 5 55 3 333 3 7 77 0 0000 33333333333333 77 0 3 7 3 7 0 33 7 000 000 00000000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 44 0 5 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGATA---AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--AAGG--A-CAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAAT-TAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AAGT--AGTAT--GAA-ATAGCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATT--GCGATT--GATT-ATTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATATA-TAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGA-TTG--GNTGATG-A--GTGGCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTNCCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAA-ANATTGG--AAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACGA-GAAAA--TATCGGTAGAGAGTTCTCG---CATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAA--TTT-ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CANTNATGATA---AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--AAAG--A-CAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGCGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATATGA--T-TAACANCAA-TGGAGGC-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAANCAA---TTTTAAAAATTTAAANAATATATT--AGAACT---AT-CTTTGTATTAATCTTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACGGAAANGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GCTGGCATAGTTCCTTTGAAAATAAGC-AAGT--AGTAT--GAA-ATANCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATT--GCGATT--GATT-ATTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----ANCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTCCTTTCCTTNACGNAGATTGCTAAGGGTCACACCTNTTGAGGGTANCACTGANTTATATAANAACACAATTTGTATTAAAGTGAGAGAAAGCCANTGTGGTATGGAGTTGN-GNTGATGCAGNGTGGCTATGAGAGNACAAATTTGCACCCAAACACACCCCCCCCCTNCCCACANCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCNTNGTTTATTAAATACAGCCTCTCAAATANATTGGGGAAGAGAAT-AAGGAATGTCTGTCGTCCNTATCATGCATATCGTTTCCTCCATGCACGAAGGANAGTTATCGGTAGAGANTTCTCGTCGCATGGTGATAGTGATCAAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAA--TNT-ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAA--TGTGAGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTTATATCTATTAA-TGATGGCAACCATGTAA-TTAAACACATTAATGATA---AAATCTGTTA-CGGC----TAATGTAAAAACTTTTTA-CATT--AAAGGTA-CAGACGA-AATCGT--CCAATT-AAT--GATTAAAACTTT-AAAT-GGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATAAG-A-GAATTTT-CATT--AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAAT--AAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAAT--AAATTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAAGTGTAGTATTAGAACATATCACT-TTGTCA-TATATAA-GTCGAAAATC-AAA-T-TTGCT-GAATTT-ATTCT-ATTAGTATT--GTAATT---ATT-ATTAA-AAGAAG-TTATTAAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATATA-GAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGA-TTGT-GTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-CAA--ACATT-GGGAAGAG--T-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAAGGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAA--TTT-CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAAAA-TC------CA-C----TAATG-ATAAA--TTTTG-CATT--AACG--A----ATGC-A-TCATAACCA-TT-AAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAA--TTT-ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACACATTTAT-CATC--AGGGG-A-AAGACAA-G-TCGT--TCA-TA-AAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG-GG-AAGAATTTTACATTT-AT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA---TTT-ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAA--GTT-GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaTAAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATA--TTT-ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC--T-ATATC-GTTAA-TGATG-CA-TCATC--A-T--AA-----------------A-TC-GTT--CG-C----TAATG-GGAAACCTTT---CATT--AGAG--AATAGACGATA-T-GT--ACA-TT-AAT--GAT-AAAAA--G-AAATT
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAA--TAT-ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGC
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAA--TTT-ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AA---TTGTATC-ATTAA-TGATG-CA-CCATC--AAT--AAC-CATTAATGATA---AA-TC-GTT--CG-C----TA-TG-AAAAACTTTTTTTCATT--AAAGG-A-CAGACAA-A-TTGT--CCA-TTTAAT--GAT-AAA-CTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACTA-TGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----AT--CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GTAA-CAA---TTTT-------TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTA-T--TTATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGCAAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATT----GATTTGAATT-ATTAACCG--AGTTT-TTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTGT-GTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTG----GGAGTTG--GGTGATGCA--GTGGC--TGA-AGTCCAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGG--AAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACGA-GAACA--TATCGGTAGAG-TTTCTCG---CATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAA--TTT-ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--GAC-CAATTATGATA---TA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--AAAGT-C-CAGACAA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AA---TT--AAAAA---AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AAGT--AGTAT--GAA-ATAGCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATT--G--ATT--GATT-ATTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATATG-TAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG----GATTTGGTGATGAT------TGGCT----GAGC-TAA--------CCAAAT----------CTTACCC-CACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAA--AATTG---AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAGACGAAAA--TATCGGTAGAGAGTTCTCG---CATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAA--TGT-ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAA--TTT-ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC--T-ATAAC-ATTAA-TGATG-CA-C-ATC--A-T--GAC--ATTAATGAAG---AA-TC-GTT--CG-CGAAATAATG-AAAA--CTTTCT-CATT--ACGA--A-CAGACGA-A-TCGT--CCA-TT-AAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTT--GAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-T--ACATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAA--TTT-ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AA---TTATTTA-ATTAA-TGATG-CA-CCATC--C-T--AAC-------------------C-GTT--C---------ATG-ATACACATCTGT-------------A-TAG--------CGC--TCA-AT-AAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGTGT-ATGAATTTGACATTT-AT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACA--TTT-CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AAGT--AGTAT--TAA-ATAACATTCTTGTCA-TT-A-AA-GTCGAAT-TC-CCACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAA-AG--AG-TA-TTAAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAA--TAT-ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAATTGA-ATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAA--TTT-ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AA-----ACAT---TTAAATGATG-CA-CAATC--A-T--GAC-CATTAATGATGC--AA-TC-GTTTTCG-C----TAATG-AAAAACTTTTTT-CATTTAGAGG--A-CA-ATGA-ATTCG---CCA-TT-AATTGAAT-AAAACTTG-AAATcttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 22222 11 1111111 11 1111 111 1111111111 11 11111 22222222 11 1111 1111 1 11 1 11 111 111 1 4444444444 11 333333333333 11 2222222 2 1 22222 11 11 22222222 1 11 11 1 11 1 1 1 1 1 1 1 1 1 11 11 1 11111 1 1 1 1 1 11 1 3333 222 1 1111 1 1111 1111 11 1111 111 111 11 1 11 1 1 11 22222 1 1 11 222 1 222222 44444444444 11 4444444444444 1 11 11 1 111 22 1111 222 1 111 11 11 222 1 44444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 22222 66 5 5 5 1 7777 66 00 0 0 5555555 5 5 11 5 0000 4 2 222 6666666666 1 4 8 66 4 4 66 4 22 5 99 3 55 6 6 99 6 8888 66666 3 33333333 6 6 3 6 3 1 6 99 11 7777 88 8 1 4444 1 0 22 3 0 3 55 33 2 777 777 0 2222222222 22 999999999999 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 0 33 3 0 33 0 2 0 0 0 0 3 3 0 0 33 3 33 0 33 2 88888 0 0 0 2 0 3 0 33 0 9999 000 0 7777 0 8 7777 8 8 8 7777 11 7777 44 444 8 8 0 444 11 8 8 33 55 2 7 6 88 3 7 3 6 88 55555 3 1 3 88 888 3 666666 11111111111 33 88 7777777777777 5 88 7 44 7 3 7 888 6 6 00 3333 777 3 6 777 88 6 44 333 3 22222222 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 2 33 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ..... .. . . . . .... .. .. . . ....... . . .. . .... . . ... .......... . . . .. . . .. . .. . .. . .. . . .. . .... ..... . ........ . . . . . . . .. .. .... .. . . .... . . .. . . . .. .. . ... ... . .......... .. ............ . . .. ....... . . . . . . ..... . .. .. ........ . .. . .. . . .. . . . . . . . . . . .. . .. . .. . ..... . . . . . . . .. . .... ... . .... . . .... . . . .... .. .... .. ... . . . ... .. . . .. .. . . . .. . . . . .. ..... . . . .. ... . ...... ........... .. .. ............. . .. . .. . . . ... . . .. .... ... . . ... .. . .. ... . ........ . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . . .. . . . .. .. .......... . .. .. .
lowQualScore : 777 99 11111 44 7 0 0 4 8888 99 66 2 2 0000000 0 0 99 0 6666 4 8 888 0000000000 9 4 9 11 4 4 11 4 66 0 00 2 88 7 7 22 7 0000 77777 5 55555555 7 7 5 7 5 7 7 22 00 8888 88 0 0 8888 2 0 55 2 0 2 00 88 5 555 555 0 8888888888 22 000000000000 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 2 88 2 0 88 0 5 0 0 0 0 3 3 0 0 88 2 88 0 55 5 55555 0 0 0 5 0 2 0 22 0 2222 222 0 8888 0 0 0000 0 0 0 0000 00 0000 00 000 0 0 8 000 00 0 0 55 88 0 3 7 77 3 3 3 7 33 33333 3 0 3 33 000 3 000000 00000000000 55 00 0000000000000 5 55 3 00 3 3 3 333 7 7 77 7777 333 3 7 777 33 7 00 333 3 00000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 5 44 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAACTAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTG-GGTGATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAA-A-ATTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAATTAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTG-GNTGATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTNCCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAA-ANATTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAATGTG--AGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTTATATCTATTAA-TGATGGCAACCATGTAA-TTAAACACATTAATGAT---A-AAATCTGTTA-CGGC----TAATGTAAAAACTTTTTA-CATT--A-A-AGGTACAGACGA-AATCGT--CCAATT-AAT--GATTAAAACTTT-AAAT-GGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATAAG-A-GAATTTT-CATT--AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAAT-AAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAATAAA--TTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAA-GTGTAGTATTAGAACATATCACT-TTGTCAT-ATATAA-GTCGAAAATCA-AA-T-TTGCT-GAATTT-ATTCTA-TTAGTATTGTA--ATT---ATTA-TTAAA-AGAAGTTATT-AAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGATTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-C-AA-ACATTGGGA-AGAGT-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAA-GGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAAT-TT--CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAA-AA-TC------CA-C----TAATG-ATAAA--TTTTG-CATT--A-A-CG--A---ATGC-A-TCATAACCA-TT-AAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACACATTTAT-CATC--A-G-GGG-AAAGACAA-G-TCGT--TCA-TA-AAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG-GG-AAGAATTTTACATTT-AT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA-T-TT--ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAG-TT--GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaT-AAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATAT-TT--ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC--T-ATATC-GTTAA-TGATG-CA-TCATC--A-T--AA------------------A-TC-GTT--CG-C----TAATG-GGAAACCTTT---CATT--AGA-GA--ATAGACGATA-T-GT--ACA-TT-AAT--GAT-AAAAA--G-AAATT
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAAT-AT--ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGC
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAAT-TT--ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AA---TTGTATC-ATTAA-TGATG-CA-CCATC--AAT--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TA-TG-AAAAACTTTTTTTCATT--A-AAGG--ACAGACAA-A-TTGT--CCA-TTTAAT--GAT-AAA-CTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACTA-TGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----AT--CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GTAA-CAAT--TTT------TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--T-ATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGC-AAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATTG----ATTTGAATTA-TTAACCG--AGTT-TTTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTG-TGTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG---GAGTTG-GGTGATGCAGTG--GC--TGAAGTC-CAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGGAAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACG-A-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAAT-TT--ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--GAC-CAATTATGAT---A-TA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-AGT-CCAGACAA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AAT--T--AAAAA--AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTG----ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG---G-ATTT-GGTGATG-ATTG--GCT----GAGC-TAA--------CCAAAT-----------CTTACCCCACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAA-A-ATTG-AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAG-ACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-GT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAAT-TT--ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC--T-ATAAC-ATTAA-TGATG-CA-C-ATC--A-T--GAC--ATTAATGAA---G-AA-TC-GTT--CG-CGAAATAATG-AAAA--CTTTCT-CATT--A-C-GA--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTTGAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-TACA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AA---TTATTTA-ATTAA-TGATG-CA-CCATC--C-T--AAC--------------------C-GTT--C---------ATG-ATACACATCT-------------GT--ATAG--------CGC--TCA-AT-AAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGTGT-ATGAATTTGACATTT-AT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACAT-TT--CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AA-GT--AGTAT--TAA-ATAACATTCTTGTCAT-T-A-AA-GTCGAAT-TCC-CACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAAA-G--AGTA-TT-AAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAAT-AT--ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAA-TTGAATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAAT-TT--ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AA-----ACAT---TTAAATGATG-CA-CAATC--A-T--GAC-CATTAATGAT---GCAA-TC-GTTTTCG-C----TAATG-AAAAACTTTTTT-CATTTAG-A-GG--ACA-ATGA-ATTCG---CCA-TT-AATTGAAT-AAAACTTG-AAATcttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 22222 11 1111111 11 1111 111 1111111111 11 11111 22222222 11 1111 1111 1 11 1 11 111 111 1 4444444444 11 33333333333 11 2222222 2 1 22222 11 11 22222222 1 11 11 1 11 1 1 1 1 1 1 1 1 1 11 11 1 11111 1 1 1 1 1 11 1 3333 222 1 1111 1 1111 1111 11 1111 111 111 11 1 11 1 1 11 22222 1 1 11 222 1 222222 44444444444 11 4444444444444 1 11 11 1 222 22 1111 222 1 111 11 11 222 1 44444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 22222 66 5 5 5 1 7777 66 00 0 0 5555555 5 5 11 5 0000 4 2 222 6666666666 1 4 8 66 4 4 66 4 22 5 99 3 55 6 6 99 6 8888 66666 3 33333333 6 6 3 6 3 1 6 99 11 7777 88 8 1 4444 1 0 22 3 0 3 55 33 2 777 777 0 2222222222 22 88888888888 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 0 33 3 0 33 0 2 0 0 0 0 3 3 0 0 33 3 33 0 33 2 88888 0 0 0 2 0 3 0 33 0 9999 000 0 7777 0 8 7777 8 8 8 7777 11 7777 44 444 8 8 0 444 11 8 8 33 55 2 7 6 88 3 7 3 6 88 55555 3 3 88 888 3 666666 11111111111 1 88 7777777777777 5 88 7 44 7 3 222 6 6 00 3333 777 3 6 777 88 6 44 333 3 22222222 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 2 33 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ..... .. . . . . .... .. .. . . ....... . . .. . .... . . ... .......... . . . .. . . .. . .. . .. . .. . . .. . .... ..... . ........ . . . . . . . .. .. .... .. . . .... . . .. . . . .. .. . ... ... . .......... .. ........... . . .. ....... . . . . . . ..... . .. .. ........ . .. . .. . . .. . . . . . . . . . . .. . .. . .. . ..... . . . . . . . .. . .... ... . .... . . .... . . . .... .. .... .. ... . . . ... .. . . .. .. . . . .. . . . . .. ..... . . .. ... . ...... ........... . .. ............. . .. . .. . . ... . . .. .... ... . . ... .. . .. ... . ........ . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . . .. . . . .. .. .......... . .. .. .
lowQualScore : 777 99 11111 44 7 0 0 4 8888 99 66 2 2 0000000 0 0 99 0 6666 4 8 888 0000000000 9 4 9 11 4 4 11 4 66 0 00 2 88 7 7 22 7 0000 77777 5 55555555 7 7 5 7 5 7 7 22 00 8888 88 0 0 8888 2 0 55 2 0 2 00 88 5 555 555 0 8888888888 22 00000000000 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 2 88 2 0 88 0 5 0 0 0 0 3 3 0 0 88 2 88 0 55 5 55555 0 0 0 5 0 2 0 22 0 2222 222 0 8888 0 0 0000 0 0 0 0000 00 0000 00 000 0 0 8 000 00 0 0 55 88 0 3 7 77 3 3 3 7 33 33333 3 3 33 000 3 000000 00000000000 0 00 0000000000000 5 55 3 00 3 3 333 7 7 77 7777 333 3 7 777 33 7 00 333 3 00000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 5 44 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAA-TAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAA--NATTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAACTAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAA--AATTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAATGTG--AGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTTATATCTATTAA-TGATGGCAACCATGTAA-TTAAACACATTAATGAT---A-AAATCTGTTA-CGGC----TAATGTAAAAACTTTTTA-CATT--A-A-AGGTACAGACGA-AATCGT--CCAATT-AAT--GATTAAAACTTT-AAAT-GGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATAAG-A-GAATTTT-CATT--AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAAT--TTTAAAAA-TAAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAATAAA--TTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAA-GTGTAGTATTAGAACATATCACT-TTGTCAT-ATATAA-GTCGAAAATCA-AA-T-TTGCT-GAATTT-ATTCTA-TTAGTATTGTA--ATT---ATTA-TTAAA-AGAAGTTATT-AAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGATTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-CAAA--CATTGGGA-AGAGT-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAA-GGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAAT-TT--CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAA-AA-TC------CA-C----TAATG-ATAAA--TTTTG-CATT--A-A-CG--A---ATGC-A-TCATAACCA-TT-AAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACACATTTAT-CATC--A-G-GGG-AAAGACAA-G-TCGT--TCA-TA-AAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG-GG-AAGAATTTTACATTT-AT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA-T-TT--ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAG-TT--GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaT-AAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATAT-TT--ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC--T-ATATC-GTTAA-TGATG-CA-TCATC--A-T--AA------------------A-TC-GTT--CG-C----TAATG-GGAAACCTTT---CATT--AGA-GA--ATAGACGATA-T-GT--ACA-TT-AAT--GAT-AAAAA--G-AAATT
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAAT-AT--ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGC
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAAT-TT--ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AA---TTGTATC-ATTAA-TGATG-CA-CCATC--AAT--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TA-TG-AAAAACTTTTTTTCATT--A-AAGG--ACAGACAA-A-TTGT--CCA-TTTAAT--GAT-AAA-CTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACTA-TGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----AT--CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GTAA-CAAT--TTT------TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--T-ATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGC-AAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATTG----ATTTGAATTA-TTAACCG--AGTT-TTTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTG-TGTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG---GAGTTGGGT-GATGCAGTG--GC--TGAAGTC-CAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGGAAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACG-A-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAAT-TT--ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--GAC-CAATTATGAT---A-TA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-AGT-CCAGACAA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AAT--T--AAAAA--AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTG----ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG---G-ATTTGGT-GATG-ATTG--GCT----GAGC-TAA--------CCAAAT-----------CTTACCCCACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAA--AATTG-AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAG-ACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-GT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAAT-TT--ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC--T-ATAAC-ATTAA-TGATG-CA-C-ATC--A-T--GAC--ATTAATGAA---G-AA-TC-GTT--CG-CGAAATAATG-AAAA--CTTTCT-CATT--A-C-GA--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTTGAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-TACA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AA---TTATTTA-ATTAA-TGATG-CA-CCATC--C-T--AAC--------------------C-GTT--C---------ATG-ATACACATCT-------------GT--ATAG--------CGC--TCA-AT-AAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGTGT-ATGAATTTGACATTT-AT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACAT-TT--CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AA-GT--AGTAT--TAA-ATAACATTCTTGTCAT-T-A-AA-GTCGAAT-TCC-CACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAAA-G--AGTA-TT-AAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAAT-AT--ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAA-TTGAATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAAT-TT--ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AA-----ACAT---TTAAATGATG-CA-CAATC--A-T--GAC-CATTAATGAT---GCAA-TC-GTTTTCG-C----TAATG-AAAAACTTTTTT-CATTTAG-A-GG--ACA-ATGA-ATTCG---CCA-TT-AATTGAAT-AAAACTTG-AAATcttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 22222 11 1111111 11 1111 111 1111111111 11 11111 22222222 11 1111 1111 1 11 1 11 111 111 1 4444444444 11 111 11111111 11 2222222 2 1 22222 11 11 22222222 1 11 11 1 11 1 1 1 1 1 1 1 1 1 11 11 1 11111 1 1 1 1 1 11 1 3333 222 1 1111 1 1111 1111 11 1111 111 111 11 1 11 1 1 11 22222 1 1 11 222 1 222222 44444444444 11 4444444444444 1 11 11 1 11 22 1111 222 1 111 11 11 222 1 44444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 22222 66 5 5 5 1 7777 66 00 0 0 5555555 5 5 11 5 0000 4 2 222 6666666666 1 4 8 66 4 4 66 4 22 5 99 3 55 6 6 99 6 8888 66666 3 33333333 6 6 3 6 3 1 6 99 11 7777 88 8 1 4444 1 0 22 3 0 3 55 33 2 777 777 0 2222222222 22 777 44444444 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 0 33 3 0 33 0 2 0 0 0 0 3 3 0 0 33 3 33 0 33 2 88888 0 0 0 2 0 3 0 33 0 9999 000 0 7777 0 8 7777 8 8 8 7777 11 7777 44 444 8 8 0 444 11 8 8 33 55 2 7 6 88 3 7 3 6 88 55555 3 3 88 888 3 666666 11111111111 1 88 7777777777777 5 88 7 44 7 3 1 88 6 6 00 3333 777 3 6 777 88 6 44 333 3 22222222 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 2 33 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ..... .. . . . . .... .. .. . . ....... . . .. . .... . . ... .......... . . . .. . . .. . .. . .. . .. . . .. . .... ..... . ........ . . . . . . . .. .. .... .. . . .... . . .. . . . .. .. . ... ... . .......... .. ... ........ . . .. ....... . . . . . . ..... . .. .. ........ . .. . .. . . .. . . . . . . . . . . .. . .. . .. . ..... . . . . . . . .. . .... ... . .... . . .... . . . .... .. .... .. ... . . . ... .. . . .. .. . . . .. . . . . .. ..... . . .. ... . ...... ........... . .. ............. . .. . .. . . . .. . . .. .... ... . . ... .. . .. ... . ........ . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . . .. . . . .. .. .......... . .. .. .
lowQualScore : 777 99 11111 44 7 0 0 4 8888 99 66 2 2 0000000 0 0 99 0 6666 4 8 888 0000000000 9 4 9 11 4 4 11 4 66 0 00 2 88 7 7 22 7 0000 77777 5 55555555 7 7 5 7 5 7 7 22 00 8888 88 0 0 8888 2 0 55 2 0 2 00 88 5 555 555 0 8888888888 22 555 88888888 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 2 88 2 0 88 0 5 0 0 0 0 3 3 0 0 88 2 88 0 55 5 55555 0 0 0 5 0 2 0 22 0 2222 222 0 8888 0 0 0000 0 0 0 0000 00 0000 00 000 0 0 8 000 00 0 0 55 88 0 3 7 77 3 3 3 7 33 33333 3 3 33 000 3 000000 00000000000 0 00 0000000000000 5 55 3 00 3 3 0 33 7 7 77 7777 333 3 7 777 33 7 00 333 3 00000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 5 44 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAATGTG--AGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTTATATCTATTAA-TGATGGCAACCATGTAA-TTAAACACATTAATGAT---A-AAATCTGTTA-CGGC----TAATGTAAAAACTTTTTA-CATT--A-A-AGGTACAGACGA-AATCGT--CCAATT-AAT--GATTAAAACTTT-AAAT-GGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATAAG-A-GAATTTT-CATT--AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAATAAA--TTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAA-GTGTAGTATTAGAACATATCACT-TTGTCAT-ATATAA-GTCGAAAATCA-AA-T-TTGCT-GAATTT-ATTCTA-TTAGTATTGTA--ATT---ATTA-TTAAA-AGAAGTTATT-AAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGATTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-CAAACA--TTGGGA-AGAGT-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAA-GGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAAT-TT--CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAA-AA-TC------CA-C----TAATG-ATAAA--TTTTG-CATT--A-A-CG--A---ATGC-A-TCATAACCA-TT-AAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACACATTTAT-CATC--A-G-GGG-AAAGACAA-G-TCGT--TCA-TA-AAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG-GG-AAGAATTTTACATTT-AT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA-T-TT--ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAG-TT--GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaT-AAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATAT-TT--ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC--T-ATATC-GTTAA-TGATG-CA-TCATC--A-T--AA------------------A-TC-GTT--CG-C----TAATG-GGAAACCTTT---CATT--AGA-GA--ATAGACGATA-T-GT--ACA-TT-AAT--GAT-AAAAA--G-AAATT
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAAT-AT--ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGC
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAAT-TT--ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AA---TTGTATC-ATTAA-TGATG-CA-CCATC--AAT--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TA-TG-AAAAACTTTTTTTCATT--A-AAGG--ACAGACAA-A-TTGT--CCA-TTTAAT--GAT-AAA-CTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACTA-TGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----AT--CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GTAA-CAA---TTTT-----TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--T-ATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGC-AAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATTG----ATTTGAATTA-TTAACCG--AGTT-TTTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTG-TGTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG---GAGTTGGGT-GATGCAGTG--GC--TGAAGTC-CAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGGAAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACG-A-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAAT-TT--ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--GAC-CAATTATGAT---A-TA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-AGT-CCAGACAA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AA---TT--AAAAA-AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTG----ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG---G-ATTTGGT-GATG-ATTG--GCT----GAGC-TAA--------CCAAAT-----------CTTACCCCACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAAAA--TTG-AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAG-ACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-GT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAAT-TT--ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC--T-ATAAC-ATTAA-TGATG-CA-C-ATC--A-T--GAC--ATTAATGAA---G-AA-TC-GTT--CG-CGAAATAATG-AAAA--CTTTCT-CATT--A-C-GA--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTTGAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-TACA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AA---TTATTTA-ATTAA-TGATG-CA-CCATC--C-T--AAC--------------------C-GTT--C---------ATG-ATACACATCT-------------GT--ATAG--------CGC--TCA-AT-AAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGTGT-ATGAATTTGACATTT-AT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACAT-TT--CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AA-GT--AGTAT--TAA-ATAACATTCTTGTCAT-T-A-AA-GTCGAAT-TCC-CACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAAA-G--AGTA-TT-AAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAAT-AT--ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAA-TTGAATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAAT-TT--ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AA-----ACAT---TTAAATGATG-CA-CAATC--A-T--GAC-CATTAATGAT---GCAA-TC-GTTTTCG-C----TAATG-AAAAACTTTTTT-CATTTAG-A-GG--ACA-ATGA-ATTCG---CCA-TT-AATTGAAT-AAAACTTG-AAATcttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 22222 11 1111111 11 1111 111 1111111111 11 11111 22222222 11 1111 1111 1 11 1 11 111 111 1 4444444444 11 111 11111111 11 2222222 2 1 22222 11 11 22222222 1 11 11 1 11 1 1 1 1 1 1 1 1 1 11 11 1 11111 1 1 1 1 1 11 1 3333 222 1 1111 1 1111 1111 11 1111 111 111 11 1 11 1 1 11 22222 1 1 11 222 1 222222 44444444444 11 4444444444444 1 11 11 1 11 22 1111 222 1 111 11 11 222 1 44444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 22222 66 5 5 5 1 7777 66 00 0 0 5555555 5 5 11 5 0000 4 2 222 6666666666 1 4 8 66 4 4 66 4 22 5 99 3 55 6 6 99 6 8888 66666 3 33333333 6 6 3 6 3 1 6 99 11 7777 88 8 1 4444 1 0 22 3 0 3 55 33 2 777 777 0 2222222222 22 777 44444444 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 0 33 3 0 33 0 2 0 0 0 0 3 3 0 0 33 3 33 0 33 2 88888 0 0 0 2 0 3 0 33 0 9999 000 0 7777 0 8 7777 8 8 8 7777 11 7777 44 444 8 8 0 444 11 8 8 33 55 2 7 6 88 3 7 3 6 88 55555 3 3 88 888 3 666666 11111111111 1 88 7777777777777 5 88 7 44 7 3 1 88 6 6 00 3333 777 3 6 777 88 6 44 333 3 22222222 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 2 33 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ..... .. . . . . .... .. .. . . ....... . . .. . .... . . ... .......... . . . .. . . .. . .. . .. . .. . . .. . .... ..... . ........ . . . . . . . .. .. .... .. . . .... . . .. . . . .. .. . ... ... . .......... .. ... ........ . . .. ....... . . . . . . ..... . .. .. ........ . .. . .. . . .. . . . . . . . . . . .. . .. . .. . ..... . . . . . . . .. . .... ... . .... . . .... . . . .... .. .... .. ... . . . ... .. . . .. .. . . . .. . . . . .. ..... . . .. ... . ...... ........... . .. ............. . .. . .. . . . .. . . .. .... ... . . ... .. . .. ... . ........ . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . . .. . . . .. .. .......... . .. .. .
lowQualScore : 777 99 11111 44 7 0 0 4 8888 99 66 2 2 0000000 0 0 99 0 6666 4 8 888 0000000000 9 4 9 11 4 4 11 4 66 0 00 2 88 7 7 22 7 0000 77777 5 55555555 7 7 5 7 5 7 7 22 00 8888 88 0 0 8888 2 0 55 2 0 2 00 88 5 555 555 0 8888888888 22 555 88888888 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 2 88 2 0 88 0 5 0 0 0 0 3 3 0 0 88 2 88 0 55 5 55555 0 0 0 5 0 2 0 22 0 2222 222 0 8888 0 0 0000 0 0 0 0000 00 0000 00 000 0 0 8 000 00 0 0 55 88 0 3 7 77 3 3 3 7 33 33333 3 3 33 000 3 000000 00000000000 0 00 0000000000000 5 55 3 00 3 3 0 33 7 7 77 7777 333 3 7 777 33 7 00 333 3 00000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 5 44 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAATGTG--AGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTTATATCTATTAA-TGATGGCAACCATGTAA-TTAAACACATTAATGAT---A-AAATCTGTTA-CGGC----TAATGTAAAAACTTTTTA-CATT--A-A-AGGTACAGACGA-AATCGT--CCAATT-AAT--GATTAAAACTTT-AAAT-GGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATAAG-A-GAATTTT-CATT--AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAATAAA--TTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTGAAA-TAAGCTAA-GTGTAGTATTAGAACATATCACT-TTGTCAT-ATATAA-GTCGAAAATCA-AA-T-TTGCT-GAATTT-ATTCTA-TTAGTATTGTA--ATT---ATTA-TTAAA-AGAAGTTATT-AAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGATTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-CAAACA--TTGGGA-AGAGT-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAA-GGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAAT-TT--CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAA-AA-TC------CA-C----TAATG-ATAAA--TTTTG-CATT--A-A-CG--A---ATGC-A-TCATAACCA-TT-AAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACACATTTAT-CATC--A-G-GGG-AAAGACAA-G-TCGT--TCA-TA-AAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG-GG-AAGAATTTTACATTT-AT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA-T-TT--ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAG-TT--GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaT-AAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATAT-TT--ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC--T-ATATC-GTTAA-TGATG-CA-TCATC--A-T--AA------------------A-TC-GTT--CG-C----TAATG-GGAAACCTTT---CATT--AGA-GA--ATAGACGATA-T-GT--ACA-TT-AAT--GAT-AAAAA--G-AAATT
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAAT-AT--ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGC
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAAT-TT--ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AA---TTGTATC-ATTAA-TGATG-CA-CCATC--AAT--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TA-TG-AAAAACTTTTTTTCATT--A-AAGG--ACAGACAA-A-TTGT--CCA-TTTAAT--GAT-AAA-CTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACTA-TGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----AT--CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GTAA-CAA---TTTT-----TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--T-ATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGC-AAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATTG----ATTTGAATTA-TTAACCG--AGTT-TTTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTG-TGTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG---GAGTTGGGT-GATGCAGTG--GC--TGAAGTC-CAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGGAAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACG-A-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAAT-TT--ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--GAC-CAATTATGAT---A-TA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-AGT-CCAGACAA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AA---TT--AAAAA-AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTG----ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG---G-ATTTGGT-GATG-ATTG--GCT----GAGC-TAA--------CCAAAT-----------CTTACCCCACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAAAA--TTG-AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAG-ACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-GT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAAT-TT--ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC--T-ATAAC-ATTAA-TGATG-CA-C-ATC--A-T--GAC--ATTAATGAA---G-AA-TC-GTT--CG-CGAAATAATG-AAAA--CTTTCT-CATT--A-C-GA--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGTGG-ATGAATTTCG-AGCT-ATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTTGAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-TACA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AA---TTATTTA-ATTAA-TGATG-CA-CCATC--C-T--AAC--------------------C-GTT--C---------ATG-ATACACATCT-------------GT--ATAG--------CGC--TCA-AT-AAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGTGT-ATGAATTTGACATTT-AT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACAT-TT--CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AA-GT--AGTAT--TAA-ATAACATTCTTGTCAT-T-A-AA-GTCGAAT-TCC-CACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAAA-G--AGTA-TT-AAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAAT-AT--ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAA-TTGAATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAAT-TT--ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AA-----ACAT---TTAAATGATG-CA-CAATC--A-T--GAC-CATTAATGAT---GCAA-TC-GTTTTCG-C----TAATG-AAAAACTTTTTT-CATTTAG-A-GG--ACA-ATGA-ATTCG---CCA-TT-AATTGAAT-AAAACTTG-AAATcttttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
blockSeqs : . . CTT C A . . T AA . C TATAAA . . TT . GAAA . A TTT TAGAGG A T T AA . T TG . AT A GA A CG . A AA C AAAT GAACC A TTAAA T A T G A A T TA . T TA A T ACT T . G T . A CG . G . GAG G TAACCTTCTT TC TAC TTGAGTCT T . ATAT T G T C T CN T TT GT GAA . . . T . AA C C . . T . . A . A . T . . AG C TAA C . A C G T T AA . CGCG TGA A CG . T . . . . . AA . TC . . G . . . . TG GT A A G AC A A . G CA GA . C . T . ATCTT . A AC . . . A TG A T T GA G G TT ATC C . C AC . G GA . . TAG T . TTCCGGTTTTTTTTTTTT . . ACC TTT T G TTTC A CTAT AA T G TATGGAT C C TTT A T TATGA . . T T C T AGTT A AG . AA . CTATGAGC G GA CT . T A C G TC T . GA A . C GT GA . C TA AT G
blockSeqs : . . CT C . . . C G . C TGCA . . . . . . C TG AGGGG T . . . . . . . CT . TT A . . . . . AAA . A AC . . T . T A . . . T T . G T A . G T . A CG . G . . . CA C . AAAAA T . ATC T . . C A T N . . NNN . . . T . . . C . . . . . . . . . T . . AA C AA . . . C . T . A . . G . G . . . . . . . . . TT . . . . . . . TG GT . . G G . . . . . G . . . T . . . G . . A . . G . AT T . . A . G G . . GA T . . . . . . . . AAA C AC . A . TTATA . . AC C . TGG . . . . T . TA . AA . . . C . . . . G . . . T . . . . . . . . . . . AT .
blockSeqs : . . TT C . . . C A . C TAA . . . . . . T AT AGAGA C . . . . . . . CT . TT A . . . . . AAA . A A . . T . T A . . . T T . G T A . . . . . G . . . . . A A . TTT . . TA . . . . . T . . . AA . . . . . . . C . . . . . . . . . . G C TA . . . C . T . . . . G . G . . . . . . . . . TC . . . . . . . A G . . . . . . . . . . C A . . . GCAA . . . . . TGG . . . . . . G . AG . . . . . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . CT C . . . C A . C TAT . . . . . . T TT AAAGG C . . . . . . . CT . AT . . . . . . A . T A . . T . T G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A A . . . TTA . . . . . TGA . . . . . . G . AG . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . TT A . . . C A . . AGA . . . . . . C CT AAAGT C . . . . . . . CT . T . . . . . . . . A A . . . . T A . . . . . . . . . . T A . . . GTA . . . . . TGG . . . . . . G . AG . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A C . . . . . . . . . A TT AACG T . . . . . . . A . T . . . . . C A . . . GCA . . . . . TGG . . . . . . G . AG . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . T . ACGA C . . . . . . . . . . . . . . C A . . . TA . . . . . TGG . . . . . . G . T . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . GT . . . . . . . . . . . . T A . . . AA . . . . . TGG . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C A . . . TA . . . . . TGG . . . . . . G . G . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . G G . . . TA . . . . . TTG . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . G A . . . CT . . . . . TG . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . CT . . . . . TG . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . TA . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : *** ** CT*** C* A*** ** C* ** AGAGG***** NT ** A******* ** T*** **** **** **** *** *** ** ** *** C* A*** TA********* *** ** TGG**** G**** AG** ** *** ** ***** ** **********
originalCons : CGCTAATG---CAAA--AAC--TTATATC-ATTAA-TGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATT--A-A-GG--ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
finalCons : CGCTAATG---CAAA--AACT---ATATC-ATTAA-TGATG-CA-CCATCA---T--AACC-ATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAACTTTTTT-CATTAGAGG-----ACAGACGA-A-TCGT--CCA-TT-AAT--GAT-AAAACTTG-AAANTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATGA-------AA-ATGTAT-TAGTGG-ATGAATTTCACATTT-AT--TAAT--GAT---ATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-TAAA--TTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTGAAA-TAAGC-AA-GT--AGTAT--GAA-ATAGCACTCTTGTCAT-A-A-AA-GTCGAAA-TCA-CACT-TTGCTTGAATTA-ATTCTA-TTAG-ATTGCG--ATT--GATTA-TTAAA-G--AGTT-TT-AAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-GA---A--C-GAT-TTA---------TCA-T-TAATG---GTT--A-TGATGG----T-GC-A-TC-A-TT-AATG----ATA-TAAG--TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA
Alignments
lowQualScore : 111 111 11111111111 1111111 11 1111 11 11 11111 22222222 11 11 1111 1111 1 11 1 11 111 111 1 4444444444 111 11111111 11 2222222 2 1 22222 11 11 22222222 1 11 11 1111 1 1 1 1 1 1 1 2 11 11 1 1 111 1 1 1 1 1 11 1 22222 222 1 11111 1 1 1111 1111 11 1111 111 111 11 1 11 1 1 11 22222 1 1 11 222 1 222222 44444444444 11 4444444444444 1 11 11 1 11 22 1111 222 1 111 11 11 222 1 44444444 11 444444444444444444 111 1111 22222222222 111 1111 11111111 1111111111 11
lowQualScore : 111 77 000 5 1 5 5 55 11111111111 0 0 5555555 5 5 11 5 0000 0 4 77 88 4 99 66 4 8 66 8 66 99 0 5 33 3 55 6 6 99 6 8888 66666 3 33333333 6 6 00 3 1 6 99 11 7777 0 8 8 1 4444 1 0 22 3 0 3 55 33 2 777 777 0 2222222222 9 2 777 44444444 3 0 33 5555555 3 0 0 2 9 0 11111 5 33 33 33333333 0 33 0 7 33 4444 0 2 0 0 0 0 3 3 0 33 3 33 0 33 2 0 111 0 0 0 2 0 3 0 33 0 99999 000 0 44444 0 0 7777 8 8 8 7777 11 7777 44 444 8 8 0 444 11 8 8 33 55 2 7 6 88 3 7 3 6 88 55555 3 3 88 888 3 666666 11111111111 1 88 7777777777777 5 88 7 44 7 3 1 88 6 6 00 3333 777 3 6 777 88 6 44 333 3 22222222 3 11 0 999999999999999999 6 111 888 555 3 3 1111 33 9999 44 9 2 00000000000 2 2 111 88 2 4444444 2 2 2 2 5 2 66666 2 6666 33 33 444 11111111 2 55 33 66666 5 2 2 2 55 2 2 33 2 2 2 33 66 1111111111 2 33 22 2
lowQualScore : ... .. ... . . . . .. ........... . . ....... . . .. . .... . . .. .. . .. .. . . .. . .. .. . . .. . .. . . .. . .... ..... . ........ . . .. . . . .. .. .... . . . . .... . . .. . . . .. .. . ... ... . .......... . . ... ........ . . .. ....... . . . . . . ..... . .. .. ........ . .. . . .. .... . . . . . . . . . .. . .. . .. . . ... . . . . . . . .. . ..... ... . ..... . . .... . . . .... .. .... .. ... . . . ... .. . . .. .. . . . .. . . . . .. ..... . . .. ... . ...... ........... . .. ............. . .. . .. . . . .. . . .. .... ... . . ... .. . .. ... . ........ . .. . .................. . ... ... ... . . .... .. .... .. . . ........... . . ... .. . ....... . . . . . . ..... . .... .. .. ... ........ . .. .. ..... . . . . .. . . .. . . . .. .. .......... . .. .. .
lowQualScore : 777 99 000 7 7 7 0 22 99999999999 2 2 0000000 0 0 99 0 6666 1 4 22 33 4 99 33 4 9 11 9 11 00 7 7 33 2 88 7 7 22 7 0000 77777 5 55555555 7 7 22 5 7 7 22 00 8888 8 0 0 0 8888 2 0 55 2 0 2 00 88 5 555 555 0 8888888888 8 5 555 88888888 2 8 88 8888888 2 0 0 5 8 8 00000 8 88 88 55555555 0 88 2 0 88 8888 0 5 0 0 0 0 3 3 0 88 2 88 0 55 5 0 000 0 0 0 5 0 2 0 22 0 22222 222 0 88888 0 0 0000 0 0 0 0000 00 0000 00 000 0 0 8 000 00 0 0 55 88 0 3 7 77 3 3 3 7 33 33333 3 3 33 000 3 000000 00000000000 0 00 0000000000000 5 55 3 00 3 3 0 33 7 7 77 7777 333 3 7 777 33 7 00 333 3 00000000 2 00 6 222222222222222222 7 777 888 888 3 1 9999 22 4444 22 2 9 00000000000 9 9 000 44 5 8888888 5 5 5 5 0 5 88888 7 4444 77 44 444 66666666 5 99 77 22222 0 5 5 5 99 5 5 44 5 7 7 77 33 7777777777 7 77 77 7
consensus : CGCTAATG---CAAA--AAC---T-ATATC-ATTAATGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAAC-TTTTTTCA-TTAGAGG-ACAGACGA-A-TCGT--CCA-TTAAT--GAT-AAAACTTG-AAA-TGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGT-GGATGAATTTCACA-TTTAT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTG-AAATAAGC-AAGT--AGTAT--GAA-ATAGCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATTGCG--ATT--GATTA-TTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
Reference ( family-2078 ) : CGCTAATG---CAAA--AAC---T-ATATC-ATTAATGATG-CA-CCATC--A-T--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----TAATG-AAAAAC-TTTTTTCA-TTAGAGG-ACAGACGA-A-TCGT--CCA-TTAAT--GAT-AAAACTTG-AAANTGGAAATT--ATGCACA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGT-GGATGAATTTCACA-TTTAT--TAAT--GA---TATT-CTTG-AATTTAATANGA--T-TAACAACAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAAAAATATATT--AGAACT---AT-CTTTGTATTAATCCTTT-CG-AGTCCTACAAATGATTTATT-T---TGTAATATCC--GTT--TGTTATCA-GAA----TAT-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTTTG-AAATAAGC-AAGT--AGTAT--GAA-ATAGCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATTGCG--ATT--GATTA-TTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATTTTTTTCTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGTGTTCTTTCCTTAAAGAAGATTGCTAAGGGTCACACCTGTTGAGAGTAGCACTGAGTTATAT-ATAACACAATTTGTATTAAAG-GAGAGAAAGC--TTGTGG---GGATTGGGT-GATG-AGTG--GCT-TGAGAGC-CAAATCT-CACCCAAACACACCCCCCCCCTCNCCCCACCCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCGTGGTTTATTAAATACAGCCTC-CAAANA--TTGGAAGAGAAT-AAGGAA-AT-TGTC-TCCATAT-ATGCATATCGTTTCCTCCATGCACG-A-GAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-GA--AAATTTCCTTT--CTCATT------------------TT-CT---TTTA---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGC
gi|1 : ---TTTTTA---C-ATT-A----GCCGT-A-A--CAGAT-T-TT--A-----TCA-T-TAATGT--GTTTAA-TTACAT--GGTTGCCA-TC-A-TT-AATAG---ATA-TAAAGGTTTGTC--TGATCTA--------TTAG-CGG-AAC--GCGAGAGAGTC-GC-ATT-CGT-TAA--T-G-AAAATGTG--AGC-ATTAA-G--CG-GGATTTGGGTGTTAGAT-AT--ATTA--TTA-ATG
gi|1 : CGCTAATAGATCAGACAAACCTTT-ATATCTATTAATGATGGCAACCATGTAA-TTAAACACATTAATGAT---A-AAATCTGTTA-CGGC----TAATGTAAAAAC-TTTTTACA-TTAAAGGTACAGACGA-AATCGT--CCAATTAAT--GATTAAAACTTT-AAA-TGGAAATTT-ATGCACAAG-TG--TCGT-CTACTAATGATAAA-AAA-----A-TG----ACACAA-ATGTAT-CATA-AGA-GAATTTT-CA-TT-AT--TAGTTTGAGTGCATT-CGTG-AATTTAATATGA--TATAACAGCAAATGGAGGTTGCTTTCCATAAAGTAC--AGGCCTGATAAACGTATATGAT---CC-TCAGAA-AA-------GTAAACAA---TTTTAAAAATAAACAATATATTTTAGAACTTATAC-CTTTGTATTAATCTTTTTCG-AGTCCTACAAATGCATTATT-TATGTGTTATATCC--GTT--TGTGATCAAGAAATGATATATTTTGTTTTCTGTTAAAAAAAAGTTTATAACAGAAATGTGCTAATTGATATATGCAACAAAAAT--AAATTATT-ACTC-AATCTATTTCGATGCCAC-ATTGCTGGCATAGTTCCTTTG-AAATAAGCTAAGTGTAGTATTAGAACATATCACT-TTGTCA-TATATAA-GTCGAAAATC-AAA-T-TTGCT-GAATTT-ATTCT-ATTAGTATTGTA--ATT---ATTA-TTAA-AAGAAG-TTATTAAATCTTTACCATTCTTATAGGCTCGCAATTAATTGCAACTTGAGCAATTGTTT--TTTTTACATTTCTTTACTTAATTTACTGTATAAACTTCAA-ATAAT-CAAAAAATTCACTGATGTTTGTTGT-TTCTTTCCTTTACACAGATTGCTAAGG-TCACACCTTTTGAGAGTA-CACTGATTTATAT-AGAACACAATTTGTATTAAAGTGAGAGAAAGC--ATGTGGTATGGATTGTGTTGATG-AGTGTGGCTATGAGAGCACAAATTTGCACCCAAACACACCCCCCCCCTCCCCCC--CCCCGCGCCCCCCCGGATTAATAATACATTAGACCGCCT-GTTTATTAAATACAGCCTC-CAAACA--TTGGGA-AGAGT-AAGAAATGT-TATCGTCCTTATCATGCATATCGTTTCCTCCATGCACGAA-GGAAAGTTATC-GTAGA-AGTTCTCGTCGCATGGTGATAGTGATCAATTTTTCATTGACTCCTT------------------TTACTCGATTTA---TTTTTT---C-ATT-A----GA-A--A-A--C-GAT-T-T---ATGGATTCACT-CAATGAC-GTTA-A-TGA--T--GGT-GT-A-TC-ACTT-AAT-AGTTATA-TAA--GTTT--TAATT---CACTATGAGCTTAG-AT--AACCTGC-AG-----T-GA-ATTCCGT-TAATCT-GCAAAAT-TT--CAC-ATT-A-G--T--GGATTT----------T-AT--ATCC--TAA-ATTGTTGCctttttacattaaaggtacagacgaaatcgtccaattaatgattaaaactttaaatggaaatttatgcacaagtgtcgtctactaatgataaaaaaatgacacaaatgtatcataagagaattttcattattagtttgagtgcattcgtgaatttaatatgatataacagcaaatggaggttgctttccataaagtacaggcctgataaacgtatatgatcctcagaaaagtaaacaattttaaaaataaacaatatattttagaacttatacctttgtattaatctttttcgagtcctacaaatgcattatttatgtgttatatccgtttgtgatcaagaaatgatatattttgttttctgttaaaaaaaagtttataacagaaatgtgctaattgatatatgcaacaaaaataaattattactcaatctatttcgatgccacattgctggcatagttcctttgaaataagctaagtgtagtattagaacatatcactttgtcatatataagtcgaaaatcaaatttgctgaatttattctattagtattgtaattattattaaaagaagttattaaatctttaccattcttataggctcgcaattaattgcaacttgagcaattgttttttttacatttctttacttaatttactgtataaacttcaaataatcaaaaaattcactgatgtttgttgtttctttcctttacacagattgctaaggtcacaccttttgagagtacactgatttatatagaacacaatttgtattaaagtgagagaaagcatgtggtatggattgtgttgatgagtgtggctatgagagcacaaatttgcacccaaacacaccccccccctccccccccccgcgcccccccggattaataatacattagaccgcctgtttattaaatacagcctccaaacattgggaagagtaagaaatgttatcgtccttatcatgcatatcgtttcctccatgcacgaaggaaagttatcgtagaagttctcgtcgcatggtgatagtgatcaatttttcattgactccttttactcgatttattttttcattagaaaacgatttatggattcactcaatgacgttaatgatggtgtatcacttaatagttatataagttttaattcactatgagcttagataacctgcagtgaattccgttaatctgcaaaatttcacattagtggattttatatcctaaattgttgctcacacaccactt
gi|10 : cattaataatatatctaacacccaaatcccgcttaatgctcacattttcattaacgaatgcgactctctcgcgttcTG-CA-TTGTA--G-C--AAC-CATTAATGATATAA-AA-TC------CA-C----TAATG-ATAAA---TTTTGCA-TTA-----ACGAATGC-A-TCATAACCA-TTAAT--GAT-AAAtcacacaccactt
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtcgttcgctaa
gi|10 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtaTT-A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--A-TGA-------T-GC-ATTC-G-TT-AAT-G----CA--AA--ATTT--A--T----CA--------TTAG-TG--GAcataaccattaatgataaatcgttcgctaa
gi|11 : gttttgaaattgcgttgattttaactgaaaatggttcaggtcatttgtgcaaggtgtgcattgtagcaaccattaatgatataaaa-AAACAC-ATTTATCA-TCAGGGG-AAAGACAA-G-TCGT--TCA-TAAAT--AAT-AAAAATTG-CGAGAGGAATAT--ATGTACA-G-TG--TCAT-CCACTAATGAT----ATA-----AATG----AC--AA-ATGTAT-TTG--GGAAGAATTTTACA-TTTAT--CA
gi|12 : aaaG---ATT--A-TGA--TATGAT-GC-A-CC-A-TTTAAT-G---GTA-TA----TTT--T--TT---CA--------TTAG-TGGAAAT--ACAAA-----TTGC-AT--CGT-TAA--TTGCATA-T-TT--ATC-ATC-A-G--T--GGATTT----------T-TT--ATTAT-TTT-ATGGTTGCtta
gi|13 : tatccattgaaaaatcgagtttgcAT-T-A---A-----TCA-T-TAATG---GTT--A-TGA--T--GGT-GC-A-T-----T-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--ATC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAG-TT--GTC-ATT-A-G--T--GGAGTT----------T-AT-------------TGGTTGCt
gi|14 : tgcttaatcatgaaacgtgtgtaTAAATTCTT----TCTTTTTGGGCTCGCA-TTAAT-G-AA----ATAAAATGTTT--TAT----GATTTTTTCTGTA---TAC-GTATAAACTGTAA-ATAATTCAAAG---TA--T-ATGTT-GTGGTGTCC
gi|15 : TT--A-TGA--T--GAT-GC-A-CC-A-TT-AAT-G---GTA-TA---TTTT--T--TT---CA--------TTAG-TG--AAA--ATAAA-----T-GC-ATT-CGT-TAA--T-GCAATAT-TT--ATC-ATC-A-G--T--GGATTT----------T-AT--ATTA--TTA-GTGGTTcgtaggggggttac
gi|16 : tcgtttgcgatA--AAC---T-ATATC-GTTAATGATG-CA-TCATC--A-T--AA------------------A-TC-GTT--CG-C----TAATG-GGAAAC-CTTT--CA-TTAGAGA-ATAGACGATA-T-GT--ACA-TTAAT--GAT-AAAA
gi|17 : --TG---CAC-------TTAGGCG--AGA--GCAAA-----T-GCAATT-CGT-T-T--T-GCAAAAT-AT--ATC-ATT-A-A--TGAGGA-TT----------T-ATTAATCAATTTA---GGTTGCagaaatt
gi|2 : TTTTT---C-AT--A----GC-G--A-A--C-GAT-T-T---A-----TCA-T-TAATG---GTT--ATTGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA---TTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-------GC-ATT-CGTGTAA--T-GCAAAAT-TT--ATC-ATT-ACG--T--GGATTT----------T-AT--ATCA--TTA-ATt
gi|2 : CGCTAATG---CAAA--AAT---T-GTATC-ATTAATGATG-CA-CCATC--AAT--AAC-CATTAATGAT---A-AA-TC-GTT--CG-C----T-ATG-AAAAACTTTTTTTCA-TTAAAGG-ACAGACAA-A-TTGT--CCATTTAAT--GAT--AAACTTT-AA--TGGAAATT--ATGCACA-G-TG--TCGT-CCACT-ATGATAAATAAA-----AATG----A---AATATGTAT-TAGTGGGATGAATTTCACATTTTAT--TAAT--GA----A-T-CTTG-AATTTAATATGAACT-TAACATCAA-TGGAGGT-GCTTTC-ATAAAGTACGCAGGCGTGA--AAC-T---TGCT---CC-TCAGAA-CA-------GT-AACAA---TTTT-----TAAAAAATATATT--AGAACT---AT-CTTGGTATTAAGCTTTTGCG-AGTCCTACAAATGATTTATT-T---TA-AATATCCTTGGT--TGTTATCA--AA----TAA-TTTTTTTTTCTG--AAGAAAAAGTTAAACACAGAAAGGTA-T--TTATTATATGCAACAAAA-TAAAAATTATTCACTCCAAT-TATTTC-ATGCCACTAT-GC-GGCATAGTTCCTTTGAAAATAAGCAAAGT--AG-AT--GAA-AT-GCACTCTTGTCATTA-A-AACATCGAAA-TCAACACTGTTGCTTGAATTATATTCTAATTAG-ATT--G--ATTTGAATTA-TTAACCG--AGTTT-TTAAATTCTT----TCTCTTTAGGCTCGCA-TTATT-G-AA----AGCAATTGTTT--TTT----ATCATGT--TTTA---TAC-GTATAAA-TGCAAGATATTTCAAAA---TC--T-ATGTT-G-AGTG-TGTTTCCTTAAAGAA-ATTGCT-AGGGTCACACCTGTTGAAGATAACACTGAGTTATATAATAAC-CAATTTGTATTAAAG-GA-AGAAAATCATTGTGG---GAGTTGGGT-GATGCAGTG--GC--TGAAGTC-CAAATCT-TACCCActttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|2 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttAAACCGCGTGGTTTATTAA-TACAGCCTCTCAAATAGATTGGAAGAGAA-----GAA-ATCTGTC---CATAT-ATGCATATCGTTTC-TCCATGCACG-A-GAACA--TATCGGTAGAG-TTTC---TCGCATGG-GA----GA--AAATT-CCTTT--CTCCTTTTCCGGTTTTTTTTTTTTTT-TT---TTTA---TTTTTTTTTC-ATT-A----GA-G--A-A--CTGAT-T-TT--A-----TCA-TCTAATG---GTA--A-GGA--T--GGT-GT-A-TC-A-TT-AATTA---ATAATAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----TGGC-ATT-CGT-TAA----GCAAAAT-TT--ATC-GAT-A-G--T--GGATTT----------TCAT--ATCAG-TTA-ATGGTTGCtagtcccggaaaaaaaccgcgtggtttattaatacagcctctcaaatagattggaagagaagaaatctgtccatatatgcatatcgtttctccatgcacgagaacatatcggtagagtttctcgcatgggagaaaattcctttctccttttccggtttttttttttttttttttatttttttttcattagagaactgattttatcatctaatggtaaggatggtgtatcattaattaataataagtttttgcattagcgaacgcaaatggcattcgttaagcaaaatttatcgatagtggattttcatatcagttaatggttgctacaggcccttatccgtttctaacgtcacaattca
gi|3 : attaatgatataaaatccacgtaatgataaattttgcattacacgaatgctttgcgttcgctaatgcaaaaattgtatcattaatgatgcaccatcaataaccattaatgataaatcgttcgctatgaaaaactttttttcattaaaggacagacaaattgtccatttaatgataaactttaatggaaattatgcacagtgtcgtccactatgataaataaaaatgaaatatgtattagtgggatgaatttcacattttattaatgaatcttgaatttaatatgaacttaacatcaatggaggtgctttcataaagtacgcaggcgtgaaacttgctcctcagaacagtaacaatttttaaaaaatatattagaactatcttggtattaagcttttgcgagtcctacaaatgatttattttaaatatccttggttgttatcaaataatttttttttctgaagaaaaagttaaacacagaaaggtatttattatatgcaacaaaataaaaattattcactccaattatttcatgccactatgcggcatagttcctttgaaaataagcaaagtagatgaaatgcactcttgtcattaaaacatcgaaatcaacactgttgcttgaattatattctaattagattgatttgaattattaaccgagtttttaaattctttctctttaggctcgcattattgaaagcaattgttttttatcatgttttatacgtataaatgcaagatatttcaaaatctatgttgagtgtgtttccttaaagaaattgctagggtcacacctgttgaagataacactgagttatataataaccaatttgtattaaaggaagaaaatcattgtgggagttgggtgatgcagtggctgaagtccaaatcttacccatagtcccggaaaaCGCTAATG---CAAA--AAC---TTATATC-ATTAATGATG-CA-CCATC--A-T--GAC-CAATTATGAT---A-TA-TC-GTT--CG-C----TAATG-AAAAAC-TTTTTTCA-TTAAAGT-CCAGACAA-A-TCGT--CCA-TTAAT--GAT-AAAACTTG-AAATTGGAAATT--ATGCGCA-G-TG--TCGT-CCACTAATGATAAA-AAA-----AATG----A---AA-ATGTAT-TAGT-GGATGAATTTCACA-TTTAT--TAAT--GA---TATT-CTTG-AATTTAATAGGA--T-TAACAACAA-TGGAGGT-GCTT-C-ATAAAGTACGCAGGCGTGA--AACGT---TGCT---CC-TCAGAA-A--------GTAAA-AA---TT--AAAAA-AAAAAATACATT--AGAACC---ATATTTTGTATTAATCCTTT-CA-AACTCTACAAAAGATTTATT-T---TGTAATATCC--GTTGTTGTTATCA-GAA----TAT-TTTTTTTTTCTA--AAGAAAAAGTTAAACACAAAAAGGTATT--TTAATATATGCAACAAAA-T--AAATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-GC-GGCATAGTTCCTATG-AAATAAGC-AAGT--AGTAT--GAA-ATAGCACTCTTGTCA-TA-A-AA-GTCGAAA-TC-ACACT-TTGCTTGAATTA-ATTCT-ATTAG-ATTG----ATT--GATTA-TTAA-AG--AG-TT-TTAAATTCTT----TCTTTTTAGGCTCGCA-TTAAT-G-AA----AGCAATTGTTT--TTT----ATCCTTTTTTTTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATGTT-GTGGGGTTCATTCCTTAAAGAAAGTGGCTAAGGGTCACACCTGTGGAGAGTAG-ACTGAGCTATAT-GTAACACAATTTGTTTTAAAG-GAGAGAAAGC--TTGTGG---G-ATTTGGT-GATG-ATTG--GCT----GAGC-TAA--------CCAAAT-----------CTTACCCCACCCCCATG-------------ATAA-ACA--AG-CCGCG-GGTTCATTAAATACAATCTC-CAAAAA--TTG-AAGAGAATTAAGGAA-AT-TGT--TCCATAT-ATGCATATCGTTTCCTCCATGCAAG-ACGAAAA--TATCGGTAGAGAGTTC---TCGCATGG-GATAG-----AAATTTCCTTT--CTCATT------------------TT-CT---CTTA---TTTTTT---C-ATT-A----GT-G--A-A--C-GAT-T-T---A-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-CAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-GT--ATC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGGTTGCtacaggcccttatccgtttctaacgtcacaattca
gi|4 : TTTT---C-ATT-ATTTCGC-G--A-A--C-GAT-T-C---T-----TCA-T-TAATG----TC--A-TGA--T--G-T-GC-A-TC-A-TT-AAT-G---TTA-TA---GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CCT-TAAT-T-GC-AAAT-TT--ATC-AGT-A-GGTT--GGGTTT----------T-AT--ATCA--TTA-
gi|4 : CGCTAATG---CAAA--AAC---T-ATAAC-ATTAATGATG-CA--CATC--A-T--GA--CATTAATGAA---G-AA-TC-GTT--CG-CGAAATAATG-AAAA---CTTTCTCA-TTA-CGA-ACAGACGA-A-TCGT--CCA-TTAAT--GAT---AACTTGAAAAATGG-AATT--AT-CACA-G-TT--CCGTCCCACTAATGAT--A-AAA-----ATTG----A---AA-ATGTATATAGT-GGATGAATTTCG-A-GCTATTATAAT--GA---TTTTACTTGAAATTGAATAGGA--T-TAACAACCA-TAGAGGC--CCTTC-AT-AAGTA-GCAGGTGTGA--TAAGT---TGCTGAGCCGTCAGAATAACCTTCTTGTTATCAATACTTTTGAGTCTAACAAA--------AGAATT----T-ATTTGTA--AATCCGTT-TGTTGTC--AGAAA--GTTTGTTCN---NNNNNNNNNN--NNN--NNNNNNNN-NNN----CGT-TGTTTTCTTTCA--AAGAAAAAGGAAAACACGGGAAAATATT--TTAATATATGCAATAAAA-T--ACATTATT-ACTCCAAT-TATTTC-ATGCCAC-AT-Gctttctcattacgaacagacgaatcgtccattaatgataacttgaaaaatggaattatcacagttccgtcccactaatgataaaaattgaaaatgtatatagtggatgaatttcgagctattataatgattttacttgaaattgaataggattaacaaccatagaggcccttcataagtagcaggtgtgataagttgctgagccgtcagaataaccttcttgttatcaatacttttgagtctaacaaaagaatttatttgtaaatccgtttgttgtcagaaagtttgttcnnnnnnnnnnnnnnnnnnnnnnnnncgttgttttctttcaaagaaaaaggaaaacacgggaaaatattttaatatatgcaataaaatacattattactccaattatttcatgccacatg
gi|5 : ttaatgatataaaacccaacctactgataaatttgcaattaaggaatgcatttgcgttT------------------TT-CT---TTGA---TCATT------ATTGA----GC-GCTATA--CAGATGTGT---A-----TCA-T-GAACG---GTT--A-GGA--T--GGT-GC-A-TC-A-TT-AAT-T---AAA-TAA---TTT--T--TG---CA--------TCAG-CG--AAC--GGTAA-----T-GC-ATT-CGT-TAA--T-GCAAAAT-TT--ACC-AAC-A-G--T--GGATTT----------T-AT--ATCA--GTA-ATTGCTGC
gi|5 : tttaaaaacatttttaaaaaagctcaacatgtgtaCGCTGATG---CAAA--AAT---T-ATTTA-ATTAATGATG-CA-CCATC--C-T--A-------------------A-CC-GTT--C---------ATG-ATACAC-ATCT----------GT-ATAG--------CGC--TCA-ATAAT--GAT-CAAA---G-AAAT----AATTCGA-GTACA-GACGAATCAT-CCATTAATGATAAA-AAAGAACCAATGTTAAA---AA-ATATAT-AAGT-GTATGAATTTGACA-TTTAT--CAGC--AA---TATT-CTTA-AATTtaattcgagtacagacgaatcatccattaatgataaaaaagaaccaatgttaaaaaatatataagtgtatgaatttgacatttatcagcaatattcttaaatt
gi|6 : tttaaaaacatttttaaaaaagctcaacatgtgtagcagcaattactgatataaaatccactgttggtaaattttgcattaacgaatgcattaccgttTTTCT---C-ATT-A----GT-G---------GAT-T-TTATA-----TCA-T-TAATGTTTGTT--A-T-A--T--G---GC-A--C-A-TT-AAT-
gi|6 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttga---TTTTTT---C-ATT-A----GC-G--A-A--C-GAT-T-C---T-----TCA-T-TAGTG---GTT--A-TGA--T--GGT-GC-A-TC-A-TT-AAT-G---ATA-TAA--GTTT--T--TG---CA--------TTAG-CG--AAC--GCAAA-----T-GC-ATT-CGT-TAA--T-GCAACAT-TT--CTC-ATT-A-G--T--GGATTT----------T-AT--ATCA--TTA-ATGTTTGtgttgcattaacgaatgcatttgcgttcgctaatgcaaaaacttatatcattaatgatgcaccatcataaccactaatgaagaatcgttcgctaatgaaaaaactt
gi|7 : atcccttactgtagacaccaccaatcaaaatatgattatgcacgtgaatgatgtttgaattaatgtgccatataa-AAGT--AGTAT--TAA-ATAACATTCTTGTCA-TT-A-AA-GTCGAAT-TC-CCACT-TTGCTTGAATTA-CTTCC--TTAG-TTTGCGCGGTT--GATTAATTAA-AG--AG-TA-TTAAATTCTT----TCTTTTTAGGCTCGCG-TCAAT-G-AA----ATTAATTGTTTAAATG----ATTTTTTTCTCTA---TAC-GTATAAACTGCAA-ATAATTCAAAG---TC--T-ATTTT-Gctt
gi|8 : TTT--CCAATT------------------TT-TT---TTTA---TTTTTT---TTATT-A----GG-G--G-A--T-AAT-T-T---A-----TTA-T-TAATG---GTTC-A-TGA--T-----------TC-A---------------------ATTT--T--TG---CA--------TCAG-C----------AAA-----T-GC-ATT-TGT-TAA--T-GCAAAAT-AT--ATC-GTT-A-G--T--AGATTT----------C-AT--ATCA--TTA-ATGGTTGC
gi|8 : TCTCCTTT--CTCATT------------------AT-GT---TTTAACCCCCTTT---G-ATA-AAAA-GG-G--ACA--C-GGT-C-GCA-A-----CCA-T-TAATG---AT---A-TGA----------A-A-TCTA-CT-AAC-G---ATA-TA-----TT--T--TG---CA--------TTAA-C----------AAA-----T-GC-ATT-TGC-TGA--T-GCAAAAA-TTGAATC-ATgaccgtgtccctttttatcaaagggggttaaaacataatgagaaaggaga
gi|9 : tttccaatttttttttattttttttattaggggataatttattattaatggttcTTTTT---C-ATT-A----GC-G--A-AAAC-GAT-TGC---A-----TCA-T-TAATG---GTC--A-TGA--T--TGT-GC-A-TC-ATTT-AA------ATG-T-----TTT--T--TG---CA--------TCAG-CG--AAC--GCAAC-----T-GC-A----------------AAAAT-TT--ATCAATT-A-G--T--GGATTT----------T-AT--ATCAATTTAGATGGTT
gi|9 : CGCTGATG---CAAA--AAA---C-AT-TT-A--AATGATG-CA-CAATC--A-T--GAC-CATTAATGAT---GCAA-TC-GTTTTCG-C----TAATG-AAAAAC-TTTTTTCATTTAGAGG-ACA-ATGA-ATTCG---CCA-TTAATTGAAT-AAAACTTG-AAActtttttcatttagaggacaatgaattcgccattaattgaataaaacttgaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTAAGAAACTCTTGACACACCAGCATTGTAG
Unaligned ( gi|19 ): TTTACTCAGAAAATTTTTATCAGGCATTGTA