lowQualScore : 11111111111111111111 2222222222222222222222222222222222222222222222222222222222 111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111 2222222222222 111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 00000000000000000000 444444 2 2 2 11 3333333333333333333333333333333333333333333333333333333333 2 1 11 3333 22 1 1 22 333 22 11 444 222222222222222222222222 111 5555555555555555555555555555 2222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 333 1 222 2 3333 2 0000000000000 88888 1 2222222222222 4 44 1 222222222 4 4 77777777777777777 22 999999999 6666 4 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 1
lowQualScore : 5 22222222222222222222 111111 0 0 3 0 88 3333333333333333333333333333333333333333333333333333333333 0 66 5 88 8888 77 5 5 4 77 333 77 4 88 333 777777777777777777777777 3 2 555 8888888888888888888888888888 8 7777 77 6 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 555 3 5 777 66 0 0000 3 0 0000000000000 4 3 88888 6 7 0000000000000 0 6 66 5 6 6 999999999 0 0 77777777777777777 33 6 555555555 3333 6 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 5
lowQualScore : . .................... ...... . . . . .. .......................................................... . .. . .. .... .. . . . .. ... .. . .. ... ........................ . . ... ............................ . .... .. . . ............................................................................................................................................................................................................................................................. .. ... . . ... .. . .... . . ............. . . ..... . . ............. . . .. . . . ......... . . ................. .. . ......... .... . . ................................................................................... .
lowQualScore : 0 55555555555555555555 000000 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000 0 55 5 55 5555 55 0 5 0 55 555 55 0 55 555 000000000000000000000000 2 0 888 8888888888888888888888888888 8 7777 00 7 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00 000 0 5 000 55 0 5555 0 0 5555555555555 0 0 00000 0 0 0000000000000 0 0 00 0 0 0 000000000 0 0 00000000000000000 00 0 000000000 0000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0
consensus : NCCTAATGTTGCATTAAGNCCTTAATGTGA-CAATTNAGTTAATGGC-TGCATTTGAATACCGTCTGTATANAACCATTTATTAAACTCACATTTANCTAATGNGCTATTAATATATTATGGCAAACTACAGCATTAAACNATCAATTGACGTTTGAGATTCAANNCCATAATNGCAATACGCTAAGTGTTTACTTCCTGCTTATTTTNCAAACATGTGCATTTTGCACGTGTGTCTNTTAGTCACGCTGAGACACG-AATGCCGATACAT---TATCCGGCTCATTTTTGAAAA--AAAA-----------AAAATTAACT-GCT-A-ATAACGAGTTTAATTAT-C-TCGTCATAAC-G-TGATACTAACTA---CTA-----ATTTTAACGAGATAT-TATCATCTNTGNCNTGACGAAACTNAAACCTGATCGTT--ATA-ATTTTAAAAAAANCCATGTCTAGAATCAT--AGTTNAAAGCTTCCTCANTNAACGTGNGGGGGGGGGGGGGGGGGGGGGGGGGATCGCTANAAATGAGACCCAAAGCGGGCNGCTTTCNTACTGAANCGCNNNCGNTTTCTTTCTTTTATCTTTCCTTATCTGCTTCCGTCTTTTTTTTTCNAAAAGTNCTTAACGNNTTTANNTTGACATCTCATAAAATANTAGGGGNGGTGGGTTGGAGTTGTANNTNANTGCAACCAC----AGCATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( gi|1 ) : CCCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAGTTA-TGGCCTGCATT-AAATACCGT-TGTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTAATATCT-----CAAATCACA---TTAACCAATCA-TTAACGTTTGAGAT-CAATCCCATAATTGC-A--CGCTA--TGTTTACTTCCTGCTTATTTTTTA--CATGTGCATTTTGCAC--ATGTCTTTTAGTC--TCTGAAATACGAAAAGCCGATACATATATATCCGGCTCATTTTTGGAAA--GAAA-----------AAAATTAACT-GTTAA-ATAATGAGTTTAATTAT-C-TCGTCATAAC-ATTGATACTAACC----CTA-----ATTTCAACGAGATAT-TATCAACTTTGCCATAAGGAAGTTCAAATTTGATTGTT--ATA-ATTT-------ATTTATTTC----ATCATTTATTTTA---TTTTTTTAA-AAAAATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT---TGAG-CC---A-C---CG---TTCGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTTTCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGG-----------CTTTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTTAGTGAGAAATGCACAATGATACGAGTCCAAACCTGGGATTCGAATCCAGTTCCCTTAATCTCCCGTCGGTCCGAGTATTTAATAACTATCTAAACACCACGCTTGAAAATTATTCATGGAAAGACATTGCACCATGCTTACCAGACTTATGATTCACTCCCGGCCAGAAAATAATTACAATTTGAAAAACTCTCTTGTTAAAAATGATGAATCCCACCTCACAATTCATTCCATCAAATATCAAATAAAATATTTTAAACAGCACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATACTTGTTTACAAGTAATATGGTTGGTTGTACATGTAGAAATTATTTTTAATTTAGGCTTTACTTTTTAAAAATATATTTTAAAAATCTATATAGCTATTTATAATTGTAGAAATTTTCAGTAATTATGATATTTTTCTCCGCCCGGAACACATAATAACATGTATAAATGATAAATTTCAGCCTTGAAAGTATTACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|4 : CCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAGTTAATGGC-TGCATT-AAATATCGT-TGTATAAAACC-TTTATTAAACTCACA-TTAGTTAATGGG-----------------------ACA---TTA---AAT-------CGTTTGAGAT-CAAAACCATAA-TGCAA--CGCTA--TGTTTACTTCCTGCTTA-TTTTTA--CATGTGCA-TTTGCACGTGTGTCTATTAGTC--ACTGAAACACG-AATGCCGATACA-----ATTCGGCTCA--TTTAAAAA--AAAACCAAACAAAACAAAA--AACTCGTT---ATAACGAG-TAAATTAT-C-TTGTCACAAC-G-TGATA--AACTA---CGA-----ATTT
gi|2 : atcaacaacacattaaatttaatgtgacattaagCTAATGTTA-ATTAA-GTC------------ATTAAGTTAATGGC-TGCATTTGAATACCGTCTGTATACAACCATTTATTAA--TCACAT--ATCT--TGTGCTATTAATATATTATGGCAAACTACAGCATTAAACCATCAATTGACGTTTGAGATTCAATCCC-TAATGGC-ATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA------------ATACAT---TA-CCGGCTCATTTTTGAAGA--GAAA-----------CAAATTAAC--GCGGATATAACGAG-TTAATTAA-T-CCGTCATAAC---TGG-ACTAACT----GTA-----ATTTTCATGAGATAT-
gi|8 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgCTGGCTCATTTTGGGAAA--ATAA-----------AAAATAGATT-ACTCA-ATAACGAGT----TCGC-C-TCGTTATAAC-GATG-TAATTATT----CTT-----AT---AACGAGTTA---ATCATCTCT-TTATGACGAAA--AAAATC---TCGTT--ATA-Aacccaattcgtgatattatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|5 : tatctcgtataacgagttataagctcgGGCTCATTTTTGAAAAACAAAA-----------AAAGTTAACT-CCT---GTAAAGAGTT--AGTAT-CGTCG-CATAAC-cgtttcg
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattattctcgttataacgagatactaactcgtattaacgagatacatatcatgttaaactaactcTTAATTATTC-TCGTTATAACGA--GATACTAACT----CGT-----ATT--AACGAGATACATATCAccagccggctttcgta
gi|7 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgATTAC-C-T--TCATAA------ATACCAACCAAAACTACGTGTATTTTAGTG---TAT-TG-CATTTATGACCT---GAAACTCAAACTTAATTATC--ATATATTTTAAAAAAAACCATGTC------CAT--AGTTAAAAGCTTCCTTAT-AAACA--GGGGGGGGGGGGGGGGGGGGGGGGGGAtgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|14 : GATTGTTTCACA-ATTT-------ATTTATGTCTAGAATCA---A-TTTA---TTTTTTCAATCAAGGTGTGAAGGGGGGGGGGGGGGGGGGggg
gi|2 : GGGGGGGGGGGG----------TTGCTAA---TGAG-CCCAAA-CGGGCC---TTCCTATTAAACCGCCGATATTTTTTTTCTTTTATCTTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTT-AC-GATTTAGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAA
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtTTTATAAATGAGACC---AGC---CGGCTTTCGTACTGAAACA-ATCCGATTTCT--------------------T-----CATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCAT-AAA-AT-AGGGATGGTGGG-----------GGTAAGTGCAACTAC-----GCATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTT
gi|9 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GTATCAACGATTTATGAAATTAGATGTGACGTTTGTTGTAATGAATTAATATCTCCTTAATGTGGCATTAGTTAATCAGTTGACACAACACCGTTTAGTACACTGCTTCAACTCTCATTTGTTTATTATACACTCTCATTCCAATTAAAATCCAAGTTAATGTTTACTTTTTGTTTATCACATCGTTTGATGTATTCTGTT
Unaligned ( gi|10 ): TATAACGTGATACTGACTCGTACGTAATTTAATGAGATGATATCAACTTGTTACCACAACTTATTAATATATCATTTATCTATTTTTTTATTATTTTTTATAAATGACCCCAGCCGGCTTTCGACC
Unaligned ( gi|11 ): TTGTCTCGTTAAAACGAGGTGATCTGCTAGTTATAACTAGATCCAAACTCGATATAACGAGATGATTAACTCACACTAGCTCCTCATGACGAGACAATTAACTCGTT
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Unaligned ( gi|16 ): TTTTTTCAAAAATGAGCCCAGCTGGCTTTCGTAC
Unaligned ( gi|17 ): TTTTTTTCAAAAATGAGCCCAGCCGGCTTTCGTA
Alignments
lowQualScore : 1111111111111
lowQualScore : 11111 11 333333 222 1 555555555555555555555555555555555555555 222222222 2 1 3333 33 2222 1 222 22222222 3333 11111111 33333333333 2222 11111 2222222 11111 44444444444444444444 11 1 1 11 1 8888888888888888888888888888888888888 2222222 333 99999999999999999 11111 777777777777777777777777777 333 222 22 2 9999999999999 333333 1111111111111 1 1 222222 2 2 11 1 2 222 2 1 1 55555 22 2 4444 11 2222 222 33333333 22222 1
lowQualScore : 44 33 99999 1 8 0 33 444444 000 444 5 3 777777777777777777777777777777777777777 666666666 3 22 7 4 7777 00 6 7777 6 7 2 6 1 7 999 0 66666666 0000 7 88888888 66 11111111111 77 3333 5 11111 2222222 3 3 3 888 3 3 11111 00000000000000000000 22 1 1 77 1 5 2 1 8888 2 33 0 4444444444444444444444444444444444444 11 0 4444444 1 88 666 33333333333333333 1 0 1 00000 1 444444444444444444444444444 0 1 777 1 7 111 22 0 7 99 11 3 3333333333333 1 1 0 666666 0000000000000 5 5 3 4 999999 0 0 88 5 0 4 000 0 5 66 5 00000 77 2 0 2222 88 3 3333 000 2 44444444 77777 4 5 2
lowQualScore : .. .. ..... . . . .. ...... ... ... . . ....................................... ......... . .. . . .... .. . .... . . . . . . ... . ........ .... . ........ .. ........... .. .... . ..... ....... . . . ... . . ..... .................... .. . . .. . . . . .... . .. . ..................................... .. . ....... . .. ... ................. . . . ..... . ........................... . . ... . . ... .. . . .. .. . ............. . . . ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 55 55 88888 0 0 8 66 888888 000 888 5 2 555555555555555555555555555555555555555 333333333 7 00 3 0 0000 33 7 3333 7 3 0 7 0 3 000 7 77777777 7777 3 11111111 99 77777777777 44 4444 0 11111 5555555 6 6 1 999 6 6 77777 00000000000000000000 44 4 0 77 0 0 0 0 9999 0 88 0 0000000000000000000000000000000000000 33 7 3333333 0 55 333 33333333333333333 0 7 0 33333 0 333333333333333333333333333 7 0 333 0 3 777 00 7 3 33 77 7 7777777777777 0 0 7 333333 0000000000000 0 0 0 0 000000 0 0 00 5 0 0 555 0 5 55 5 00000 55 5 0 5555 00 0 5555 000 5 55555555 55555 0 5 5
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG-GC-ATTAATAT-T-ATGGCAAACCACA-CATTAAAC-ATCA-TTGACGTTTGAGAT-CAATCCCATAAT-GCAA--CGCTA--TGTTTACTTCCTGCTTATTTTTCA-ACATGTGCATTTTGCACGTGTGTCTTTTAGTCA--CTGAAACACGAA--GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--A-TAACG-----AGT---T-AATTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGATAN-TATCATCTNTGNCATGA-GAAACTCAAATTTGATTGTT--ATA-ATTT-------ATTTATGTC----ATCA--TANTTTA---TTTTTTTAATAAAN-GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTNCTAT--ATGAG-CCCA-A-C---CCG--TTCGTATTGAAACGCANCCGNTTTCTTTCTTCT-CCTTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----AACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTGCATTAAGNCCTTAATGTGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATANAACCATTTATTAAACTCACATTTANCTAATGNGCTATTAATATATTATGGCAAACTACAGCATTAAACNATCAATTGACGTTTGAGATTCAANNCCATAATNGCAATACGCTAAGTGTTTACTTCCTGCTTATTTTNCAAACATGTGCATTTTGCACGTGTGTCTNTTAGTCACGCTGAGACACGAAT-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--A-TAACG-----AGT---TTAATTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGATAT-TATCATCTNTGNCNTGACGAAACTNAAACCTGATCGTT--ATA-ATTTTAAAAAAANCCATGTCTAGAATCA--TAGTTNAAAGCTTCCTCANTNAAC-GTGNGGGGGGGGGGGGGGGGGGGGGGGGGATCGCTANAAATGAGACCCAAAGCGGGCNGCTTTCNTACTGAANCGCNNNCGNTTTCTTTCTTTTATCTTTCCTTATCTGCTTCCGTCTTTTTTTTTCNAAAAGTNCTTAACGNNTTTANNTTGACATCTCATAAAATANTAGGGGNGGTGGGTTGGAGTTGTANNTNANTGCAACCAC----AGCATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG-TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTAATATCT-----CAAATCACA---TTAACCAATCA-TTAACGTTTGAGAT-CAATCCCATAATTGCA---CGCTA--TGTTTACTTCCTGCTTATTTTTTA--CATGTGCATTTTGCACATGT--CTTTTAGTC--TCTGAAATACGAAAAGCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACT-GTT-A--AATAATG-----AGT---TTAATTAT-C-TCGTCATAA-CATTG-AT-A----CTAAC---C----C--TA-----ATTTCAACGAGATAT-TATCAACTTTGCCATAAGGAAGTTCAAATTTGATTGTT--ATA-ATTT-------ATTTATTTC----ATCATTTATTTTA---TTTTTTTAA-AAAA-ATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT---TGAG--CCA-------CCG--TTCGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTTTCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATAA-CG-TG-AT-A----CTGACTCGTA---CG-TA-----A-TTTAATGAGATGA-TATCAACT
gi|11 : tAACG-----AGT---T-AATTGT-C-TCGTCATGA-tgttaccacaacttattaatatatcatttatctatttttttattattttttataaatgaccccagccggctttcgacc
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatataacgagatgattaactcacactagctccGATTGTTTCACA-ATTT-------ATTTATGTCTAGAATCA----ATTTA---TTTTTTCAATCAAG-GTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : GGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTC-------------ATTAAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACAT--ATCT--TGTGCTATTAATATATTATGGCAAACTACAGCATTAAACCATCAATTGACGTTTGAGATTCAATCCC-TAATGGC-ATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC--GCG-GATA-TAACG-----AG----TTAATTAA-T-CCGTCATAA-C--TG-G--A----CTAAC---TG------TA-----ATTTTCATGAGATAT-cagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTA---ATGAG-CCCAAA-CGGGCC---TTCCTATTAAACCGCCGATATTTTTTTTCTTTTATCTTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTT-ACG-ATTTAGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAacccaattcgtgatattatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtATAA-CG-TG-AT-A----CCAAC---TC---G--TA-----A-TTTAATGAGATAA-TATC
gi|3 : cggtTATAAATGAGACC---AGC---CGGCTTTCGTACTGAAACA-ATCCGATTTCTT-------------------------CATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC-----GCATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTtactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttatttataaatgagaccagccggctttcgtactgaaacaatccgatttcttcatctttttttttcaaattcttaacgtttttacattgacatctcataaaatagggatggtgggggtaagtgcaactacgcatttgctgcattgtaataaaatgggggagggagtgttctacatgtaaattaaaggaatttgcgtaatacaaacaacactattgaatgaagtttgttttgaaacaatactctacgtgtgtctatcgtttggatataactgtt
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttattCTAATGTCACATTAAGGACTTAATGCAA-C-ATTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG-TTAATGGC-TGCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACAT-TAGTTA------------------ATGGGA--------CATTAAAT----------CGTTTGAGAT-CAAAACCATAAT-GCAA--CGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCATTT-GCACGTGTGTCTATTAGTCA--CTGAAACACGAAT-GCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGTT----A-TAACG-----AG----TAAATTAT-C-TTGTCACAA-CG-TG-AT-A------AAC---TA---C--GA-----ATTTttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTC-GTT-T--A-T-ACGATATTAGTATCTCATTTAT-C-TCGTTATAGTTA-TG-GT-ATCTGTTAAT---TATT-C--TC-----GTTATAACGAGATAC-TA
gi|5 : tacaaaagcggctg-GTT-A--A-TA-CG-----AGT---T--AGTAT-C-TCGTTATAA-CG-AGAATAA----TTAACAGATA---CCATA-----ACTATAACGAGATAactcgtattaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatt---TTAATTATTC-TCGTTATAA-CG-AG-AT-A----CTAAC---TC---G--TA--------TTAACGAGATACATATCATgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACT-CCT----G-TAAAG-----AGT---T--AGTAT-CGTCG-CATAA-CG-gttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattattctcgttataacgagatactaactcgtattaacgagatacatatcatgttaaactaactCCTTAATGTGG-CA--TTAG-TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTTAccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatctATTAC-C-T--TCATAA-------AT-A----CCAAC---CAAAAC--TACGTGTATTTTAGTG---TAT-TG-CATTTATGACCTGA---AACTCAAACTTAATTATC--ATATATTTTAAAAAAAACCATGTC------CA--TAGTTAAAAGCTTCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGttatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : --A-TAACG-----AGT---T--ATAAG-C-TCGTTATAA-CG-AG-AT-g
gi|8 : tatctcgtCTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATT-ACTCA--A-TAACG-----AGT-------TCGC-C-TCGTTATAA-C---G-AT-G-----TAAT---TA---T--T------CTTATAACGAGTTA---ATCATCTCT-TTATGACGAAA--AAAATC---TCGTT--ATA-Attttttcgtcataaagagatgattaactcgttataagaataattacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|9 : tatctcgtataacgagttataagctcgACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Alignments
lowQualScore : 22222222 11 333333 222 1 111 88888888888888888888888888888888 44444444444 1 111 22 11 444 111 333 11 333333333 3333 11111111 33333333333 2222 11111111 777777777777777777777777777777777777777777777777777777 1 3333333 11 11 11 3333333 55555555555555 111 1 11 22 1 44444444 8888888888888888888888888 222 22 1 6666666666666 333333 5555555555555 1 1 222222 1 1 11 1 1 222 1 1 1 22222 11 1 2222 11 2222 222 33333333 22222 1
lowQualScore : 2 2 11111111 1 8 0 33 444444 000 3 3 5 3 111 55555555555555555555555555555555 00000000000 3 7 777 00 88 6 000 333 111 7 88 777777777 0000 7 88888888 66 11111111111 66 5555 1 4 4 44444444 4 333333333333333333333333333333333333333333333333333333 777 66 2 1 99 7 444 8888888 88 11 99 2222222 2 66666666666666 777 0 66 11 44 33 5 77777777 77 1 1 1111111111111111111111111 333 7 6 7 7 00 3 9999999999999 111111 0000000000000 5 5 1 1 999999 5 5 88 5 5 1 000 5 5 22 5 66666 88 1 5 4444 88 2 3333 000 1 44444444 77777 1 5 1
lowQualScore : . . ........ . . . .. ...... ... . . . . ... ................................ ........... . . ... .. .. . ... ... ... . .. ......... .... . ........ .. ........... .. .... . . . ........ . ...................................................... ... .. . . .. . ... ....... .. .. .. ....... . .............. ... . .. .. .. .. . ........ .. . . ......................... ... . . . . .. . ............. ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 5 5 44444444 0 0 8 66 888888 000 2 0 5 2 222 00000000000000000000000000000000 77777777777 3 3 777 77 33 7 777 000 000 3 33 333333333 7777 3 11111111 99 77777777777 77 2222 9 4 4 55555555 0 999999999999999999999999999999999999999999999999999999 000 11 1 7 22 5 222 9999999 77 00 00 5555555 5 22222222222222 555 0 55 00 77 33 0 33333333 33 0 0 3333333333333333333333333 333 3 7 3 3 77 3 3333333333333 777777 0000000000000 0 0 0 0 000000 0 5 00 5 5 0 555 0 5 00 5 55555 00 0 0 5555 00 5 5555 000 0 55555555 55555 0 5 0
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTT-ATG--CATTA--ATATCATGGCAAAC--CA-CATTAAA-C-ATC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTATC-TCGTCATAA-CG----TG-A-------T-A----CTAAC---TA---------C--TA-----ATT---TTA--ACGAGATANTATC--ATCTNTGNTATGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TANTTTA---TT-TTTTTAATAAAN-GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTA-ATGAG-CCAG-CGG-C-TTCGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTT-ATG-GCATTA--ATATTATGGCAAACCACA-CATTAAA-C-ATC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC-AACATGTGCATTTTGCACGTGTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTATC-TCGTCATAA-CG----TG-A-------T-A----CTAAC---TA---------C--TA-----ATT---TTA--ACGAGATANTATC--ATCTNTGNCATGA-GAAACTCAAATTTGATTGTT--ATA--ATTT-------ATTTATGTC----ATCA--TANTTTA---TT-TTTTTAATAAAN-GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTNCTATATGAGCCCAACCCG---TTCGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----AACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG-TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGCATTA--ATATC-T--CAAAT--CA-CATTAAC-CAATC-ATTAACGTTTGAGA-TCAATCCCATAATT-GC--ACGCTA--TGTTTACTTCCTGCTTATTTTTT--ACATGTGCATTTTGCAC--ATGTCTTTTAGTCT--CTGAAATACGAAAA-GCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACT-GTTAA--ATAATGA-GTTTAA--------TTATC-TCGTCATAA-CAT---TG-A-------T-A----CTAAC---C----------C--TA-----ATT---TCA--ACGAGATATTATC--AACTTTGCCATAAGGAAGTTCAAATTTGATTGTT--ATA--ATTT-------ATTTATTTC----ATCATTTATTTTA---TT-TTTTTAA-AAAA-ATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT-TGAG-CCA--CCG---TTCGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTT-TCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATAA-CG----TG-A-------T-A----CTGACTCGTA---------CG-TA-----A-T---TTA--ATGAGATGATATC--AACT-TGTTACCA-------CAACTT--ATTAAT--ATATCATTT-------ATCTATTT-------------TTTTA---TTATTTTTTATAAAT-G
gi|11 : t-GCT-A--GTG-TGA-G-TTAA--------TCATC-TCGTTATAT-CGAGTTTG-GATCTAGTT-A-----TAAC---TAGCAGATCACC--TC-----GTT---TTA--ACGAGACAaccccagccggctttcgacc
gi|11 : tAACGA-G-TTAA--------TTGTC-TCGTCATGA-tcctcatgacgagacaattaactcgtt
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatataacgagatgattaactcacactagctccGATTGTTTCACA--ATTT-------ATTTATGTCTAGAATCA----ATTTA---TT-TTTTCAATCAAG-GTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : GGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTC-------------ATTAAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACATAT-CTT-GTG-CTATTAATATATTATGGCAAACTACAGCATTAAACC-ATCAATTGACGTTTGAGATTCAATCCC-TAA-TGGCATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA-------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC--GCG-GATATAACGA-G-TTAA--------TTAAT-CCGTCATAA-C-----TG-G---------A----CTAAC---TG------------TA-----ATT---TTC--ATGAGATA-TACCCAATTCGTGATATcagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTA-ATGAGCCCAAACGGGCCTTCCTATTAAACCGCCGATATTTTTTTTCTTTTATC-TTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTTA-CGATTT-AGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAtatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtTTTATAAATGAGACCAGCCGGCT-TTCGTACTGAAACA-ATCCGATTTCTTC--------------------------ATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC----G-CATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTT
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaCTAATGTCACATTAAGGACTTAATGCAA-C-ATTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG-TTAATGGC-TGCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACATT-AGTT-A----------------ATGGGA--------CATTAAA-T----------CGTTTGAGA-TCAAAACCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCA-TTTGCACGTGTGTCTATTAGTCA--CTGAAACACG--AATGCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGTT----ATAACGA-G-TAAA--------TTATC-TTGTCACAA-CG----TG-A-------T-A------AAC---TA---------C--GA-----ATT---Tttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTC-GTT-T--AT-ACGATA-TTAGTATCTCATTTATC-TCGTTATAGTTA----TG-G-------T-ATCTGTTAAT---TATT-------C--TC-----GTT---ATA--ACGAGATACTA
gi|5 : tacaaaagcggctg-GTT-A--ATA-CGA-G-TTAG--------T-ATC-TCGTTATAA-CG----AGAA-------TAA----TTAACAGATA---------CCATA-----ACT---ATA--ACGAGATAactcgtattaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcattGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACT-CCT----GTAAAGA-G-TTAG---------TATCGTCG-CATAA-CG----AG-T-------T-AGT--TTAACA--TG---------A--TATGT--ATCTCGTTAATACGAGTTAGTATC---TCGTTATAACGA-GAAgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattaTCCTTAATGTGG-CA--TTAG-TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTT-ATccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatcA--------TTACC-T--TCATAA----------A-------T-A----CCAAC---CAAAA------C--TACGTGTATT---TTA--GTG---TATTG-C--ATTTATGACCTGA---AACTCAAACTTAATTATC--ATAT-ATTTTAAAAAAAACCATGTC------CA--TAGTTAAAAGCT-TCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGtatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : CTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATT-ACTCA--ATAACGA-G-T-----------TCGCC-TCGTTATAA-C------G-A-------T-G-----TAAT---TA---------T--T------CTT---ATA--ACGAGTTA--ATC--ATCTCT-TTATGACGAAA--AAAATC---TCGTT--ATA--A
gi|9 : tatctcgtataacgagttataagctcgACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Alignments
lowQualScore : 22222222 11 333333 222 1 111 88888888888888888888888888888888 44444444444 1 111 22 11 333 111 111 11 333333333 3333 11111111 33333333333 2222 11111111 6666666666666666666666666666666666666666666666666666 1 4444444444444444444444 11 11 2222222 55555555555555 111 1 1 3333333333 1 8888888888888888888888888 222 22 1 6666666666666 333333 5555555555555 1 1 222222 1 1 11 1 1 222 1 1 1 22222 11 1 2222 11 2222 222 33333333 22222 1
lowQualScore : 2 2 11111111 1 8 0 33 444444 000 3 3 5 3 111 44444444444444444444444444444444 00000000000 3 7 777 00 88 6 000 333 999 7 88 777777777 0000 7 88888888 66 11111111111 1 44 4444 0 4 4 33333333 3 3 3333333333333333333333333333333333333333333333333333 0 555 55 0 1 0000000000000000000000 11 11 99 88 6666666 1 22222222222222 444 8 66 1 1 3 3 1111111111 3 77 1 1 1111111111111111111111111 333 7 6 7 7 00 3 9999999999999 666666 0000000000000 5 5 1 1 999999 5 5 88 5 5 1 000 5 5 22 5 66666 88 1 5 4444 88 2 3333 000 1 44444444 77777 1 5 1
lowQualScore : . . ........ . . . .. ...... ... . . . . ... ................................ ........... . . ... .. .. . ... ... ... . .. ......... .... . ........ .. ........... . .. .... . . . ........ . . .................................................... . ... .. . . ...................... .. .. .. .. ....... . .............. ... . .. . . . . .......... . .. . . ......................... ... . . . . .. . ............. ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 5 5 44444444 0 0 8 66 888888 000 2 0 5 2 222 22222222222222222222222222222222 77777777777 3 3 777 77 33 7 333 000 000 3 33 333333333 7777 3 11111111 99 77777777777 4 66 3333 8 0 0 22222222 6 1 2222222222222222222222222222222222222222222222222222 4 888 00 1 2 0000000000000000000000 44 66 22 66 0000000 0 22222222222222 000 0 55 0 0 3 3 3333333333 3 33 0 0 3333333333333333333333333 333 3 7 3 3 77 3 3333333333333 333333 0000000000000 0 0 0 0 000000 0 5 00 5 5 0 555 0 5 00 5 55555 00 0 0 5555 00 5 5555 000 0 55555555 55555 0 5 0
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTATC-TCGTCATAA-CG----TG-A-------T-A----CTAAC---TA---------C--TA-----ATT---TTA--ACGAGATA-TATC--ATCTNTGNTACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTATC-TCGTCATAA-CG----TG-A-------T-A----CTAAC---TA---------C--TA-----ATT---TTA--ACGAGATANTATC--ATCTNTGNTATGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TANTTTA---TT-TTTTTAATAAANGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--AGC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG-TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTA--ATATC-T--CAAATCA---CATTAAC-CAATC-ATTAACGTTTGAGA-TCAATCCCATAATT-GC--ACGCTA--TGTTTACTTCCTGCTTATTTTTT--ACATGTGCATTTTGCAC--ATGTCTTTTAGTCT--CTGAAATACGAAAA-GCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACT-GTTAA--ATAATGA-GTTTAA--------TTATC-TCGTCATAA-CAT---TG-A-------T-A----CTAAC---C----------C--TA-----ATT---TCA--ACGAGATATTATC--AACTTTGCCATAAGGAAGTTCAAATTTGATTGTT--ATA--ATTT-------ATTTATTTC----ATCATTTATTTTA---TT-TTTTTAA-AAAAATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT-TGAG-CC--ACC-G----TT-CGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTT-TCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATAA-CG----TG-A-------T-A----CTGACTCGTA---------CG-TA-----A-T---TTA--ATGAGATGATATC--AACT-TGTTACCA-------CAACTT--ATTAAT--ATATCATTT-------ATCTATTT-------------TTTTA---TTATTTTTTATAAATG
gi|11 : t-GCT-A--GTG-TGA-G-TTAA--------TCATC-TCGTTATAT-CGAGTTTG-GATCTAGTT-A-----TAAC---TAGCAGATCACC--TC-----GTT---TTA--ACGAGACAaccccagccggctttcgacc
gi|11 : tAACGA-G-TTAA--------TTGTC-TCGTCATGA-tcctcatgacgagacaattaactcgtt
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatataacgagatgattaactcacactagctccGATTGTTTCACA--ATTT-------ATTTATGTCTAGAATCA----ATTTA---TT-TTTTCAATCAAGGTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : GGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTC-------------ATTAAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACATAT-CTTG-TG--CTATTAATATATTATGGCAAACTACAGCATTAAACCA-TCAATTGACGTTTGAGATTCAATCCC-TAA-TGGCATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA-------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC--GCG-GATATAACGA-G-TTAA--------TTAAT-CCGTCATAA-C-----TG-G---------A----CTAAC---TG------------TA-----ATT---TTC--ATGAGATA-TACCCAATTCGTGATATcagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTAA-TGAG-CCCAAAC-GGGCCTT-CCTATTAAACCGCCGATATTTTTTTTCTTTTATC-TTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTTA-CGATTT-AGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAtatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtATAA-CG----TG-A-------T-A----CCAAC---TC---------G--TA-----A-T---TTA--ATGAGATAATATC---T---------------ACTCG----TGATAATT--ATTT-ATTT-------ATCTATCTA----TTCA--T-TTTTA---TT-CATTTA
gi|3 : cggtTTTATAAATGAGACC--AGCCGG--CTTTCGTACTGAAACA-ATCCGATTTCTTC--------------------------ATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC----G-CATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTttttattactacttttttttttatttataaatgagaccagccggctttcgtactgaaacaatccgatttcttcatctttttttttcaaattcttaacgtttttacattgacatctcataaaatagggatggtgggggtaagtgcaactacgcatttgctgcattgtaataaaatgggggagggagtgttctacatgtaaattaaaggaatttgcgtaatacaaacaacactattgaatgaagtttgttttgaaacaatactctacgtgtgtctatcgtttggatataactgtt
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaCTAATGTCACATTAAGGACTTAATGCAA-C-ATTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG-TTAATGGC-TGCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACATT-AGTTA------------------ATGGGA--------CATTAAA-T----------CGTTTGAGA-TCAAAACCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCA-TTTGCACGTGTGTCTATTAGTCA--CTGAAACACG--AATGCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGTT----ATAACGA-G-TAAA--------TTATC-TTGTCACAA-CG----TG-A-------T-A------AAC---TA---------C--GA-----ATT---Tttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTC-GTT-T--AT-ACGATA-TTAGTATCTCATTTATC-TCGTTATAGTTA----TG-G-------T-ATCTGTTAAT---TATT-------C--TC-----GTT---ATA--ACGAGATACTA
gi|5 : tacaaaagcggctg-GTT-A--ATA-CGA-G-TTAG--------T-ATC-TCGTTATAA-CG----AGAA-------TAA----TTAACAGATA---------CCATA-----ACT---ATA--ACGAGATAactcgtattaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcattGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACT-CCT----GTAAAGA-G-TTAG---------TATCGTCG-CATAA-CG----AG-T-------T-AGT--TTAACA--TG---------A--TATGT--ATCTCGTTAATACGAGTTAGTATC---TCGTTATAACGA-GAAgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattaTCCTTAATGTGG-CA--TTAG-TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTTA-Tccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatcA--------TTACC-T--TCATAA----------A-------T-A----CCAAC---CAAAA------C--TACGTGTATT---TTA--GTG---TATTG-C--ATTTATGACCTGA---AACTCAAACTTAATTATC--ATAT-ATTTTAAAAAAAACCATGTC------CA--TAGTTAAAAGCT-TCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGtatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : AATTA--T-TCT-T--ATAACGA-G-TTAA--------TCATC-TCTTTATGA-CG----AA-A-------A-A------AAT--------------C--TC-----GTT---ATA--ACGAGCT--TATA--ACTCGTTATACGA-GAg
gi|8 : taCTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATT-ACTCA--ATAACGA-G-T-----------TCGCC-TCGTTATAA-C------G-A-------T-G-----TAAT---TA---------T--T------CTT---ATA--ACGAGTTA--ATC--ATCTCT-TTATGACGAAA--AAAATC---TCGTT--ATAacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|9 : tatctcgtataacgagttataagctcgtACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Alignments
lowQualScore : 22222222 11 333333 222 1 111 88888888888888888888888888888888 44444444444 1 111 22 11 333 111 111 11 333333333 3333 11111111 33333333333 2222 11111111 44444444444444444444444444444444444444 11111 333333333333333333333 11 11 2222222 4444444444444 111 1 1 2222222222 1 8888888888888888888888888 222 22 1 6666666666666 333333 5555555555555 1 1 222222 1 1 11 1 1 222 1 1 1 22222 11 1 2222 11 2222 222 33333333 22222 1
lowQualScore : 2 2 11111111 1 8 0 33 444444 000 3 3 5 3 111 44444444444444444444444444444444 00000000000 3 7 777 00 88 6 000 333 999 7 88 777777777 0000 7 88888888 66 11111111111 1 44 4444 0 3 3 22222222 3 3 2 33333333333333333333333333333333333333 1 1 00000 888 555555555555555555555 11 11 99 88 6666666 1 6666666666666 6 444 8 66 6 1 3 3 8888888888 3 77 1 1 1111111111111111111111111 333 7 6 7 7 00 3 9999999999999 666666 0000000000000 5 5 1 1 999999 5 5 88 5 5 1 000 5 5 22 5 66666 88 1 5 4444 88 2 3333 000 1 44444444 77777 1 5 1
lowQualScore : . . ........ . . . .. ...... ... . . . . ... ................................ ........... . . ... .. .. . ... ... ... . .. ......... .... . ........ .. ........... . .. .... . . . ........ . . . ...................................... . . ..... ... ..................... .. .. .. .. ....... . ............. . ... . .. . . . . .......... . .. . . ......................... ... . . . . .. . ............. ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 5 5 44444444 0 0 8 66 888888 000 2 0 5 2 222 22222222222222222222222222222222 77777777777 3 3 777 77 33 7 333 000 000 3 33 333333333 7777 3 11111111 99 77777777777 4 66 3333 8 6 6 11111111 3 3 9 55555555555555555555555555555555555555 0 2 88888 000 333333333333333333333 44 66 22 66 0000000 0 4444444444444 0 000 0 55 5 0 3 3 7777777777 3 33 0 0 3333333333333333333333333 333 3 7 3 3 77 3 3333333333333 333333 0000000000000 0 0 0 0 000000 0 5 00 5 5 0 555 0 5 00 5 55555 00 0 0 5555 00 5 5555 000 0 55555555 55555 0 5 0
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGAT--A-TATC--ATCT--NTGNT---ACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGAT--A-TATC--ATCT--NTGNT---ACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG-TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTA--ATATC-T--CAAATCA---CATTAAC-CAATC-ATTAACGTTTGAGA-TCAATCCCATAATT-GC--ACGCTA--TGTTTACTTCCTGCTTATTTTTT--ACATGTGCATTTTGCAC--ATGTCTTTTAGTCT--CTGAAATACGAAAA-GCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACT-GTTAA--ATAATGA-GTTTAA--------TTAT-C-TCGTCATAA-CATTG-AT-A----CTAAC---C----C--TA-----ATTTCAACGAGAT--ATTATC--AACT--TTGCC---ATAAGGAAGTTCAAATTTGATTGTT--ATA--ATTT-------ATTTATTTC----ATCATTTATTTTA---TT-TTTTTAA-AAAAATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT-TGAG-CC--ACC-G----TT-CGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTT-TCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATAA-CG-TG-AT-A----CTGACTCGTA---CG-TA-----A-TTTAATGAGATG-A-TATC--AACT---TGTT---ACCA-------CAACTT--ATTAAT--ATATCATTT-------ATCTATTT-------------TTTTA---TTATTTTTTATAAATG
gi|11 : t-GCT-A--GTG-TGA-G-TTAA--------TCAT-C-TCGTTATAT-CG-AG-TT-------TGGA---T----C--TA-----GTTATAACTAG-C--A-GATC--ACCT--C-GTTTTAACGA-GAaccccagccggctttcgacc
gi|11 : ttgAACGA-G-TTAA--------TTGT-C-TCGTCATGA-tcctcatgacgagacaattaactcgtt
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatataacgagatgattaactcacactagctccGATTGTTTCACA--ATTT-------ATTTATGTCTAGAATCA---ATTT-A---TT-TTTTCAATCAAGGTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : GGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTC-------------ATTAAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACATAT-CTTG-TG--CTATTAATATATTATGGCAAACTACAGCATTAAACCA-TCAATTGACGTTTGAGATTCAATCCC-TAA-TGGCATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA-------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC--GCG-GATATAACGA-G-TTAA--------TTAA-T-CCGTCATAA-C--TG-G--A----CTAAC---TG------TA-----ATTTTCATGAGAT--A-TACCCAATTC--GTGAT---Acagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTAA-TGAG-CCCAAAC-GGGCCTT-CCTATTAAACCGCCGATATTTTTTTTCTTTTATC-TTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTTA-CGATTT-AGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAttatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtATAA-CG-TG-AT-A----CCAAC---TC---G--TA-----A-TTTAATGAGAT--A--AT---ATCT------------------ACTCG----TGATAATT--ATTT-ATTT-------ATCTATCTA----TTCA--T-TTTTA---TT-CATTTA
gi|3 : cggtTTTATAAATGAGACC--AGCCGG--CTTTCGTACTGAAACA-ATCCGATTTCTTC--------------------------ATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC----G-CATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTttttattactacttttttttttatttataaatgagaccagccggctttcgtactgaaacaatccgatttcttcatctttttttttcaaattcttaacgtttttacattgacatctcataaaatagggatggtgggggtaagtgcaactacgcatttgctgcattgtaataaaatgggggagggagtgttctacatgtaaattaaaggaatttgcgtaatacaaacaacactattgaatgaagtttgttttgaaacaatactctacgtgtgtctatcgtttggatataactgtt
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaCTAATGTCACATTAAGGACTTAATGCAA-C-ATTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG-TTAATGGC-TGCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACATT-AGTTA------------------ATGGGA--------CATTAAA-T----------CGTTTGAGA-TCAAAACCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCA-TTTGCACGTGTGTCTATTAGTCA--CTGAAACACG--AATGCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGTT----ATAACGA-G-TAAA--------TTAT-C-TTGTCACAA-CG-TG-AT-A------AAC---TA---C--GA-----ATTTttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTC-GTT-T--AT-ACGATA-TTAGTATCTCATTTAT-C-TCGTTATAGTTA-TG-GT-ATCTGTTAAT---TATT-C--TC-----GTTATAACGAGAT--A-
gi|5 : tacaaaagcggctg-GTT-A--ATA-CGA-G-TTAG--------T-AT-C-TCGTTATAA-CG-AGAATAA----TTAACAGATA---CCATA-----ACTATAACGAGAT--A-AATctaactcgtattaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctc-G-TTAA--------TTATTC-TCGTTATAA-CG-AG-AT-A----CTAAC---TC---G--TA--------TTAACGAGATACA-TATC--ATgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACT-CCT----GTAAAGA-G-TTAG---------TAT-CGTCG-CATAA-CG---------------------A---G--TT-----AGTTTAACATGAT--A-TGT---ATCTCGTTAAT---ACGA-Ggttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattattctcgttataacgagatactaaTCCTTAATGTGG-CA--TTAG-TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTTA-Tccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatcA--------TTAC-C-T--TCATAA-------AT-A----CCAAC---CAAAAC--TACGTGTATTTTAGTG---T--A-TTGC--ATTT--ATG-----ACCT-GAAACTCAAACTTAATTATC--ATAT-ATTTTAAAAAAAACCATGTC------CA--TAGTTAAAAGCT-TCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGtatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : AATTA--T-TCT-T--ATAACGA-G-TTAA--------TCAT-C-TCTTTATGA-CG-AA-AA-A------AAT--------C--TC-----GTTATAACGAGCT----TATA--ACTC--GTTAT---ACGA-GAg
gi|8 : taCTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATT-ACTCA--ATAACGA-G-T-----------TCGC-C-TCGTTATAA-C---G-AT-G-----TAAT---TA---T--T------CTTATAACGAGTT--A--ATC--ATCT--CT-TT---ATGACGAAA--AAAATC---TCGTT--ATAacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|9 : tatctcgtataacgagttataagctcgtACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Alignments
lowQualScore : 22222222 11 333333 222 1 111 88888888888888888888888888888888 44444444444 1 111 22 11 333 111 111 11 333333333 3333 11111111 33333333333 2222 11111111 44444444444444444444444444444444444444 11111 333333333333333333333 11 11 2222222 4444444444444 111 1 1 2222222222 1 8888888888888888888888888 222 22 1 6666666666666 333333 5555555555555 1 1 222222 1 1 11 1 1 222 1 1 1 22222 11 1 2222 11 2222 222 33333333 22222 1
lowQualScore : 2 2 11111111 1 8 0 33 444444 000 3 3 5 3 111 44444444444444444444444444444444 00000000000 3 7 777 00 88 6 000 333 999 7 88 777777777 0000 7 88888888 66 11111111111 1 44 4444 0 3 3 22222222 3 3 2 33333333333333333333333333333333333333 1 1 00000 888 555555555555555555555 11 11 99 88 6666666 1 6666666666666 6 444 8 66 6 1 3 3 8888888888 3 77 1 1 1111111111111111111111111 333 7 6 7 7 00 3 9999999999999 666666 0000000000000 5 5 1 1 999999 5 5 88 5 5 1 000 5 5 22 5 66666 88 1 5 4444 88 2 3333 000 1 44444444 77777 1 5 1
lowQualScore : . . ........ . . . .. ...... ... . . . . ... ................................ ........... . . ... .. .. . ... ... ... . .. ......... .... . ........ .. ........... . .. .... . . . ........ . . . ...................................... . . ..... ... ..................... .. .. .. .. ....... . ............. . ... . .. . . . . .......... . .. . . ......................... ... . . . . .. . ............. ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 5 5 44444444 0 0 8 66 888888 000 2 0 5 2 222 22222222222222222222222222222222 77777777777 3 3 777 77 33 7 333 000 000 3 33 333333333 7777 3 11111111 99 77777777777 4 66 3333 8 6 6 11111111 3 3 9 55555555555555555555555555555555555555 0 2 88888 000 333333333333333333333 44 66 22 66 0000000 0 4444444444444 0 000 0 55 5 0 3 3 7777777777 3 33 0 0 3333333333333333333333333 333 3 7 3 3 77 3 3333333333333 333333 0000000000000 0 0 0 0 000000 0 5 00 5 5 0 555 0 5 00 5 55555 00 0 0 5555 00 5 5555 000 0 55555555 55555 0 5 0
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGAT--A-TATC--ATCT--NTGNT---ACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGAT--A-TATC--ATCT--NTGNT---ACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG-TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTA--ATATC-T--CAAATCA---CATTAAC-CAATC-ATTAACGTTTGAGA-TCAATCCCATAATT-GC--ACGCTA--TGTTTACTTCCTGCTTATTTTTT--ACATGTGCATTTTGCAC--ATGTCTTTTAGTCT--CTGAAATACGAAAA-GCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACT-GTTAA--ATAATGA-GTTTAA--------TTAT-C-TCGTCATAA-CATTG-AT-A----CTAAC---C----C--TA-----ATTTCAACGAGAT--ATTATC--AACT--TTGCC---ATAAGGAAGTTCAAATTTGATTGTT--ATA--ATTT-------ATTTATTTC----ATCATTTATTTTA---TT-TTTTTAA-AAAAATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT-TGAG-CC--ACC-G----TT-CGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTT-TCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATAA-CG-TG-AT-A----CTGACTCGTA---CG-TA-----A-TTTAATGAGATG-A-TATC--AACT---TGTT---ACCA-------CAACTT--ATTAAT--ATATCATTT-------ATCTATTT-------------TTTTA---TTATTTTTTATAAATG
gi|11 : t-GCT-A--GTG-TGA-G-TTAA--------TCAT-C-TCGTTATAT-CG-AG-TT-------TGGA---T----C--TA-----GTTATAACTAG-C--A-GATC--ACCT--C-GTTTTAACGA-GAaccccagccggctttcgacc
gi|11 : ttgAACGA-G-TTAA--------TTGT-C-TCGTCATGA-tcctcatgacgagacaattaactcgtt
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatataacgagatgattaactcacactagctccGATTGTTTCACA--ATTT-------ATTTATGTCTAGAATCA---ATTT-A---TT-TTTTCAATCAAGGTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : GGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTC-------------ATTAAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACATAT-CTTG-TG--CTATTAATATATTATGGCAAACTACAGCATTAAACCA-TCAATTGACGTTTGAGATTCAATCCC-TAA-TGGCATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA-------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC--GCG-GATATAACGA-G-TTAA--------TTAA-T-CCGTCATAA-C--TG-G--A----CTAAC---TG------TA-----ATTTTCATGAGAT--A-TACCCAATTC--GTGAT---Acagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTAA-TGAG-CCCAAAC-GGGCCTT-CCTATTAAACCGCCGATATTTTTTTTCTTTTATC-TTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTTA-CGATTT-AGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAttatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtATAA-CG-TG-AT-A----CCAAC---TC---G--TA-----A-TTTAATGAGAT--A--AT---ATCT------------------ACTCG----TGATAATT--ATTT-ATTT-------ATCTATCTA----TTCA--T-TTTTA---TT-CATTTA
gi|3 : cggtTTTATAAATGAGACC--AGCCGG--CTTTCGTACTGAAACA-ATCCGATTTCTTC--------------------------ATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC----G-CATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTttttattactacttttttttttatttataaatgagaccagccggctttcgtactgaaacaatccgatttcttcatctttttttttcaaattcttaacgtttttacattgacatctcataaaatagggatggtgggggtaagtgcaactacgcatttgctgcattgtaataaaatgggggagggagtgttctacatgtaaattaaaggaatttgcgtaatacaaacaacactattgaatgaagtttgttttgaaacaatactctacgtgtgtctatcgtttggatataactgtt
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaCTAATGTCACATTAAGGACTTAATGCAA-C-ATTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG-TTAATGGC-TGCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACATT-AGTTA------------------ATGGGA--------CATTAAA-T----------CGTTTGAGA-TCAAAACCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCA-TTTGCACGTGTGTCTATTAGTCA--CTGAAACACG--AATGCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGTT----ATAACGA-G-TAAA--------TTAT-C-TTGTCACAA-CG-TG-AT-A------AAC---TA---C--GA-----ATTTttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTC-GTT-T--AT-ACGATA-TTAGTATCTCATTTAT-C-TCGTTATAGTTA-TG-GT-ATCTGTTAAT---TATT-C--TC-----GTTATAACGAGAT--A-
gi|5 : tacaaaagcggctg-GTT-A--ATA-CGA-G-TTAG--------T-AT-C-TCGTTATAA-CG-AGAATAA----TTAACAGATA---CCATA-----ACTATAACGAGAT--A-AATctaactcgtattaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctc-G-TTAA--------TTATTC-TCGTTATAA-CG-AG-AT-A----CTAAC---TC---G--TA--------TTAACGAGATACA-TATC--ATgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACT-CCT----GTAAAGA-G-TTAG---------TAT-CGTCG-CATAA-CG---------------------A---G--TT-----AGTTTAACATGAT--A-TGT---ATCTCGTTAAT---ACGA-Ggttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattattctcgttataacgagatactaaTCCTTAATGTGG-CA--TTAG-TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTTA-Tccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatcA--------TTAC-C-T--TCATAA-------AT-A----CCAAC---CAAAAC--TACGTGTATTTTAGTG---T--A-TTGC--ATTT--ATG-----ACCT-GAAACTCAAACTTAATTATC--ATAT-ATTTTAAAAAAAACCATGTC------CA--TAGTTAAAAGCT-TCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGtatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : AATTA--T-TCT-T--ATAACGA-G-TTAA--------TCAT-C-TCTTTATGA-CG-AA-AA-A------AAT--------C--TC-----GTTATAACGAGCT----TATA--ACTC--GTTAT---ACGA-GAg
gi|8 : taCTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATT-ACTCA--ATAACGA-G-T-----------TCGC-C-TCGTTATAA-C---G-AT-G-----TAAT---TA---T--T------CTTATAACGAGTT--A--ATC--ATCT--CT-TT---ATGACGAAA--AAAATC---TCGTT--ATAacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|9 : tatctcgtataacgagttataagctcgtACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
blockSeqs : C G CAACAT A C T TGACAC TTA T C A A TGT TGCTATTAATATATTATGGCAAACTACAG CCATCAATTG T A TG AT AG C CAA CA GTG T CG CACGAAT T T GACGAAAT AC CCAAACAAAAC A TC GAT T . TATCTCAT T G T GAGAATAATTAACAGATACCATAAC T A ACAT CCA ATGACCTGAAACT AC TG TC TC TAAAAAA T CTAGAATCAA T AAG A AT T C A A CAAACGGGC T GC G T CTTTTATCTTTCCTTATCTGCTTC AAG A G T A AT T TTGGAGTTGTACT AA . G G A T TGCGTA . . TG A . T TGG . A CT T . . G . . CA A GTTC GGG C CCTGTAGT TTTAA T T C
blockSeqs : C G TGACA A . T TG CT T A A A TC ATGGGA T . . T A . . . T A . . . . . . . . A C CA . . . . . . ATGGTATCTGTTAATTATTCTCGT A A GAT C CTTTATGACGAAA AA TA . T . G ATTCAT T . . AT G A . . AGCCGG . A T A . . . G . A . . GG G
blockSeqs : . G TGGCA T . . A T . . . . AG . . . C T A . . . . . . ATACCAACCAAAACTACGTGTAT T A AG C TGTTACCA AA . . T . C CCATA A . . T C
blockSeqs : AT T . . . . . A T T . . . . . . GTGATACTGACTCGTACGTAA T A AT C ACT . . . . . G . . . .
blockSeqs : . . . A T A . . . . . . GTGATACCAACTCGTAA T A AA C .
blockSeqs : . . . . T . . . . . . GTGATAAACTACGAAT A A AT A
blockSeqs : . . . . . . . . . GAGATACTAACTCGTA A A AT C
blockSeqs : . . . . . . . GAGTTTGGATCTAGT T C A .
blockSeqs : . . . . . . TGGACTAACTGTAAT T T T .
blockSeqs : . . . . . . GAAAAAAATCTCGT T . A
blockSeqs : . . . . GATGTAATTATTCT A .
blockSeqs : . GAGTTAG A
blockSeqs : .
blockSeqCons : CGACA*** ** N*** GNGATACTAACTCGTA********************** AT*** CGTACA*************** ** T* CCA**********
originalCons : NCCTAATGTTACATTAAGTCCTTAATGCGA-CAATTNAG-TTAATGGC-TGCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCT-A--ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CG-TG-AT-A----CTAAC---TA---C--TA-----ATTTTAACGAGAT--A-TATC--ATCT--NTGNT---ACGA-GAAACTCAAATTTGATTGTT--ATAT-ATTT-------ATCTATNTC----ATCA--TATTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
finalCons : NCCTAATGTTACATTAAGTCCTTAATGCGACA---TNAG-TTAATGGC--GCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACT-GCTN---ATAACGA-G-TTAA--------TTAT-C-TCGTCATAA-CGNGATACTAACTCGTA----------------------TTTAACGAGATAT---ATC--ATCTCGTACA---------------CAAATT--ATTGTT--ATAT-ATTT-------ATCTATNTCCA----------TTTTA---TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT
Alignments
lowQualScore : 11111111 11 22 333333 222 1 111 88888888888888888888888888888888 44444444444 1 111 22 11 333 111 111 11 333333333 3333 11111111 33333333333 222 11111111 222222222222222222222222222222 1111 11111 3333333333333 22222222 11 2222222 55555555555555 1111 1 1 2222222222 1 8888888888888888888888888 222 22 1 6666666666666 333333 5555555555555 1 1 222222 1 1 11 1 1 222 1 1 1 22222 11 1 2222 11 2222 222 33333333 22222 1
lowQualScore : 2 2 0 11111111 3 11 0 77 444444 000 3 3 5 3 111 44444444444444444444444444444444 00000000000 3 7 777 00 88 6 000 333 999 7 88 777777777 0000 7 88888888 66 11111111111 1 33 000 4 4 44444444 3 3 1 555 44 333333333333333333333333333333 3 1 6666 00000 7777 3 3333333333333 0 88888888 2 77 88 6666666 99999999999999 7777 8 66 6 1 3 3 8888888888 3 77 1 1 1111111111111111111111111 333 7 6 7 7 00 3 9999999999999 666666 0000000000000 5 5 1 1 999999 5 5 88 5 5 1 000 5 5 22 5 66666 88 1 5 4444 88 2 3333 000 1 44444444 77777 1 5 1
lowQualScore : . . . ........ . .. . .. ...... ... . . . . ... ................................ ........... . . ... .. .. . ... ... ... . .. ......... .... . ........ .. ........... . .. ... . . ........ . . . ... .. .............................. . . .... ..... .... . ............. . ........ . .. .. ....... .............. .... . .. . . . . .......... . .. . . ......................... ... . . . . .. . ............. ...... ............. . . . . ...... . . .. . . . ... . . .. . ..... .. . . .... .. . .... ... . ........ ..... . . .
lowQualScore : 5 5 8 44444444 8 00 8 00 888888 000 2 0 5 2 222 22222222222222222222222222222222 77777777777 3 3 777 77 33 7 333 000 000 3 33 333333333 7777 3 11111111 99 77777777777 4 11 333 0 0 55555555 6 6 8 444 11 555555555555555555555555555555 1 4 9999 22222 1111 6 7777777777777 1 99999999 3 99 66 0000000 00000000000000 0000 0 55 5 0 3 3 7777777777 3 33 0 0 3333333333333333333333333 333 3 7 3 3 77 3 3333333333333 333333 0000000000000 0 0 0 0 000000 0 5 00 5 5 0 555 0 5 00 5 55555 00 0 0 5555 00 5 5555 000 0 55555555 55555 0 5 0
consensus : NCCTAATGTTACATTAAGTCCTTAATGCGA-CA--TTAG--TTAATGGCC-GCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACTNCT--TATAACGA-G-TTAA--------TTAT-C-TCGTCATA---ACG-AGA--TACTAA-----CT-CGT-----A--TTT-AACGAGAT-A-TATC--ANCT----CG-T--A-CA-------CAAATT--A-----TCGTT--ATAT-ATTT-------ATCTATTTC---A-TCA-T-TTTA----TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Reference ( family-1935 ) : NCCTAATGTTACATTAAGTCCTTAATGCGA-CA--TNAG--TTAATGGC--GCATTTG----AATACCGTCT-GTATAAAACCATTTATTAAACTCACATTTANTTA-TG--C-ATTA--ATATCATGGCAAACCA---CATTAAA-CA-TC-ATTGACGTTTGAGA-TCAATCCCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTTC--ACATGTGCATTTTGCAC--GTGTCTTTTAGTCA--CTGAAACACG--AA-GCCGATACAT---TATCCGGCTCATTTTTGAA--------AA--AAAA-----------AAAATTAACTGCT--NATAACGA-G-TTAA--------TTAT-C-TCGTCATA---ACG-NGA--TACTAA-----CT-CGT-----A--TTT-AACGAGAT-A-TATC--ATCT----CG-T--A-CA-------CAAATT--A-----TTGTT--ATAT-ATTT-------ATCTATNTC------CA-T-TTTA----TT-TTTTTAATAAACGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTNTAA-TGAG-CC--ANC-GG--CTT-CGTATTGAAACGCANCCGNTTTCTTTCTTCT-CC-TTTCCTT-TCT-----TATTTTTTTTTTTCTAA---TTCTTAACGTTTTTAGTTTGATATCTCATAAAATAA-AGGGATGG-GGGCTGG---------TTATTGCAACTAC----GACATTTGCTGCATTGTAATTAAGTAACACAAAAAAATGGGGGAGGGAGCGTTCTACATGTANATTAGAGGAANTTGCGTAGTACAAACAACCACTATTAGAATGAAGTTTGTCTTGAAGCAATATCTCTACGTGTGNCTATCGTTTGGGTACACACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCATNNTGAAAGATAAAAAAAAATAATCCTGAACTTCANCTCGTAACATATAATTCATCTGACGAGGTTCTATGGGTCCTANAACCTGTAGTATTAGTTTAAAGNATCATTTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
gi|1 : CCTAATGTTACATTAA-TCCTTAATGTGAACAATTCAG--TTA-TGGCCTGCATT-A----AATACCGT-T-GTATAAAACC-TTTATTAAACTCACATTTAGTTAATGAGC-ATTA--ATATC-T--CAAATCA---CATTAAC-CAATC-ATTAACGTTTGAGA-TCAATCCCATAATT-GC--ACGCTA--TGTTTACTTCCTGCTTATTTTTT--ACATGTGCATTTTGCAC--ATGTCTTTTAGTCT--CTGAAATACGAAAA-GCCGATACATATATATCCGGCTCATTTTTGGA--------AA--GAAA-----------AAAATTAACTGTTA-AATAATGA-GTTTAA--------TTAT-C-TCGTCATA---ACATTGA--TACTAA-----CC-CTA-----A--TTTCAACGAGAT-ATTATC--AACTTTGCCA-T--A--AGGAAGTTCAAATTTGA-----TTGTT--ATA--ATTT-------ATTTATTTCATCATTTA-T-TTTA----TT-TTTTTAA-AAAAATGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTTAT-TGAG-CC--ACC-G----TT-CGTATTGAAACACAACCGCTTTCTTTCTTCT-CCTTTTTTTT-TCT-----TATTTTTTTTTTTTTAA---TTCTTAAC-TTTTTAGTTTGATATCTCAT-AAATAA-AGGGATGG-GGGCT-----------TTATTGCAACTACATAAAACATTTACTGCATTGAAATTAAGTAACACAAAAAAAT-GGAGAGGGAGC-TTCTACATGTACATTAGAGAAAAT------GTACAAACAACCACTATTAGAATGAAGTT--TCTTG-AGTAATATTTCTACGTGTGATTATCATT---GTACACACTGTT
gi|1 : cACAGTC-TAATGAAAGA-AAAAAAAAATAATCCTGAACTTCATCTCGTAACATATAATT--TCTGACAAG----TAT---TCCTAAAA--------ATTAG-----AGAA-CATTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattacagtctaatgaaagaaaaaaaaaataatcctgaacttcatctcgtaacatataatttctgacaagtattcctaaaaattagagaacatttcacccccccccccccccccccccccccccccc
gi|10 : ccctaatgttacattaatccttaatgtgaacaattcagttatggcctgcattaaataccgttgtataaaacctttattaaactcacatttagttaatgagcattaatatctcaaatcacattaaccaatcattaacgtttgagatcaatcccataattgcacgctatgtttacttcctgcttattttttacatgtgcattttgcacatgtcttttagtctctgaaatacgaaaagccgatacatatatatccggctcatttttggaaagaaaaaaattaactgttaaataatgagtttaattatctcgtcataacattgatactaaccctaatttcaacgagatattatcaactttgccataaggaagttcaaatttgattgttataatttatttatttcatcatttattttatttttttaaaaaaatgggggggggggggggggggggggggggatttttattgagccaccgttcgtattgaaacacaaccgctttctttcttctcctttttttttcttatttttttttttttaattcttaactttttagtttgatatctcataaataaagggatgggggctttattgcaactacataaaacatttactgcattgaaattaagtaacacaaaaaaatggagagggagcttctacatgtacattagagaaaatgtacaaacaaccactattagaatgaagtttcttgagtaatatttctacgtgtgattatcattgtacacactgttagtgagaaatgcacaatgatacgagtccaaacctgggattcgaatccagttcccttaatctcccgtcggtccgagtatttaataactatctaaacaccacgcttgaaaattattcatggaaagacattgcaccatgcttaccagacttatgattcactcccggccagaaaataattacaatttgaaaaactctcttgttaaaaatgatgaatcccacctcacaattcattccatcaaatatcaaataaaatattttaaacagcacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatacttgtttacaagtaatatggttggttgtacatgtagaaattatttttaatttaggctttactttttaaaaatatattttaaaaatctatatagctatttataattgtagaaattttcagtaattatgatatttttctccgcccggaacacataataacatgtataaatgataaatttcagccttgaaagtattATA---ACG-TGA--TACTGA-----CT-CGTACGTAA--TTT-AATGAGATGA-TATC--AACT----TGTT--ACCA-------CAACTT--A-----TTAAT--ATATCATTT-------ATCTATTT----------T-TTTA----TTATTTTTTATAAATG
gi|11 : tAACGA-G-GTGA--------TCTG-C-TAGTTATA---ACT-AGA--TCCAAA-----CT-CG------A--TAT-AACGAGAT-G--ATT--AACT----C-----A-CA-------Caccccagccggctttcgacc
gi|11 : ttgtctcgttaaAACGA-G-TTAA--------TTGT-C-TCGTCATG---AGG-AG-----CTA----------GT-----G--T------GAGTT-A--ATC--ATCT----CG-T--tagctcctcatgacgagacaattaactcgtt
gi|14 : ttgtctcgttaaaacgaggtgatctgctagttataactagatccaaactcgatata--A-----TTGTTTCACA--ATTT-------ATTTATGTCTAGAATCA-A-TTTA----TT-TTTTCAATCAAGGTGTGAAGGGGGGGGGGGGGGGGGG
gi|16 : gGGCTCATTTTTGAA--------AA--AA
gi|17 : GGCTCATTTTTGAA--------AA--AAAcagctggctttcgtac
gi|2 : CTAATGTTA-ATTAAGTCATTAA-------------G--TTAATGGCT-GCATTTG----AATACCGTCT-GTATACAACCATTTATTAA--TCACATAT-CTTG-TG--CTATTAATATATTATGGCAAACTACAGCATTAAACCA-TCAATTGACGTTTGAGATTCAATCCC-TAA-TGGCATACGCTAAGTGTTTACTTCCTG-TTATTTTACAAACATGTG--TTTTGCAC--ATGTCTTT--GTCACGCTGAGA-------------ATACAT---TA-CCGGCTCATTTTTGAA--------GA--GAAA-----------CAAATTAAC-GCGGATATAACGA-G-TTAA--------TTAA-T-CCGTCATA---ACT-GG----ACTAA-----CT--GT-----AATTTT-CATGAGAT-A-TACCCAAT-T----CG-T--cagccggctttcgta
gi|2 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgGGGGGGGGGGGGTTGCTAA-TGAG-CCCAAAC-GGGCCTT-CCTATTAAACCGCCGATATTTTTTTTCTTTTATC-TTTCCTTATCTGCTTCTGTTTTTTTTTTTCTAAAAGTGCTTA-CGATTT-AGTTTGATATCTCATAAAATAATAGGGGGGG-GGGTTGGAGTTGTACTTTATTGCAACCAC----AACATTTGCTGCATTGTAAgatattatccaatgtggggggggggggttgctaatgagcccaaacgggccttcctattaaaccgccgatattttttttcttttatctttccttatctgcttctgtttttttttttctaaaagtgcttacgatttagtttgatatctcataaaataataggggggggggttggagttgtactttattgcaaccacaacatttgctgcattgtaa
gi|3 : gcaggacccggttgtttatacaaacaccacaattaaaattataattagcatttgctaatgttaattaagtcattaagttaatggctgcatttgaataccgtctgtatacaaccatttattaatcacatatcttgtgctattaatatattatggcaaactacagcattaaaccatcaattgacgtttgagattcaatccctaatggcatacgctaagtgtttacttcctgttattttacaaacatgtgttttgcacatgtctttgtcacgctgagaatacattaccggctcatttttgaagagaaacaaattaacgcggatataacgagttaattaatccgtcataactggactaactgtaattttcatgagatatacccaattcgtgatattatccaatgtATA---ACG-TGA--TACCAA-----CT-CGTA----A--TTT-AATGAGATAA-TATC--TACT----CG-T--G--A-------T-AATT--A-----T--TT--ATTT-ATCT-------ATCTATT--------CATT-TTTA----TT-CATTTA
gi|3 : cggtTTTATAAATGAGACC--AGCCGG--CTTTCGTACTGAAACA-ATCCGATTTCTTC--------------------------ATCTTTTTTTTTCAAA---TTCTTAACGTTTTTACATTGACATCTCATAAAATA---GGGATGGTGGG--GG---------TAAGTGCAACTAC----G-CATTTGCTGCATTGTAAT-------------AAAATGGGGGAGGGAGTGTTCTACATGTAAATTAAAGGAATTTGCGTAATACAAACAA-CACTATT-GAATGAAGTTTGTTTTGAAACAATA-CTCTACGTGTGTCTATCGTTTGGATATA-ACTGTTttttattactacttttttttttatttataaatgagaccagccggctttcgtactgaaacaatccgatttcttcatctttttttttcaaattcttaacgtttttacattgacatctcataaaatagggatggtgggggtaagtgcaactacgcatttgctgcattgtaataaaatgggggagggagtgttctacatgtaaattaaaggaatttgcgtaatacaaacaacactattgaatgaagtttgttttgaaacaatactctacgtgtgtctatcgtttggatataactgtt
gi|4 : cggtataacgtgataccaactcgtaatttaatgagataatatctactcgtgataattatttatttatctatctattcatttttattcatttattttattactacttttttttttaCTAATGTCACATTAAGGACTTAATGCAA-CA--TTAGGCTTAATGTC--ACATT
gi|4 : atcaacaacacattaaatttCCTAATGTTGCATTAAGTCCTTAATGTGA-CA--TTAG--TTAATGGCT-GCATT-A----AATATCGT-T-GTATAAAACC-TTTATTAAACTCACATT-AGTTA------------------ATGGGA--------CATTAAA-T----------CGTTTGAGA-TCAAAACCATAA-T-GCA-ACGCTA--TGTTTACTTCCTGCTTATTTTT---ACATGTGCA-TTTGCACGTGTGTCTATTAGTCA--CTGAAACACG--AATGCCGATACA-----ATTCGGCTCA--TTTAAA--------AA--AAAACCAAACAAAACAAAA--AACTCGT--TATAACGA-G-TAAA--------TTAT-C-TTGTCACA---ACG-TGA--TA--AA-----CTACGA-----A--TTT-ttaatggctgcattaaatatcgttgtataaaacctttattaaactcacattagttaatgggacattaaatcgtttgagatcaaaaccataatgcaacgctatgtttacttcctgcttatttttacatgtgcatttgcacgtgtgtctattagtcactgaaacacgaatgccgatacaattcggctcatttaaaaaaaaaccaaacaaaacaaaaaactcgttataacgagtaaattatcttgtcacaacgtgataaactacgaattt
gi|5 : atcaacaacacattaaatttaatgtgacattaagGGCTCATTTTTGAAGACGAAATAA--AAAA-----------AACATTACTCGTT--TAT-ACGATA-TTAGTATCTCATTTAT-C-TCGTTATAGTTATG-GTATCTGTTAATTATTCT-CGT--------TAT-AACGAG---A-TACT--AACT----CG-T--A-
gi|5 : tacaaaagcggctg-G-TTAA--------TTATTC-TCGTTATA---ACG-AGA--TACTAA-----CT-CGT-----A---TT-AACGAGAT-A-CAT---ATCA----TG-T-------------TAAACT--AAC---TCGTT--ATttaacgagatacatatcatgttaaactaactcgttatgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|5 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctGGCTCATTTTTGAA--------AAACAAAA-----------AAAGTTAACTCCT--G-TAAAGA-G-TTAG---------TAT-CGTCG-CATA---ACG-AGT--TA--------------------G--TTT-AACATGAT-A-TGT---ATCT----CG-TTAA-TA-------CGAGTT--AGTATCTCGTT--ATAgcgacgatactaactctttacaggagttaactttttttgtttttcaaaaatgagccccagccggctttcgta
gi|6 : tacaaaagcggctgggctcatttttgaagacgaaataaaaaaaacattactcgtttatacgatattagtatctcatttatctcgttatagttatggtatctgttaattattctcgtTCCTTAATGTGG-CA--TTAG--TTAAT------CAGTTGACACAACACCGTTTAGTA------CACTGCTTCAACTCTCATTTGTTTA-Tccagccggctttcgta
gi|7 : gtatcaacgatttatgaaattagatgtgacgtttgttgtaatgaattaatatc--A-CT-------CAAACTTAA-----TTATC--ATAT-ATTTTAAAAAAAACCATGTC------CA-TAGTTAAAAGCT-TCCTTA-TAAACAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGtatacactctcattccaattaaaatccaagttaatgtttactttttgtttatcacatcgtttgatgtattctgtt
gi|8 : attaccttcataaataccaaccaaaactacgtgtattttagtgtattgcatttatgacctgaaTAT-C-TCGT-ATA---ACG-AGT--TATAAG-----CT-CGT--------TAT-AACGAGAT-----TT--TTTT----CG-T----CA-------TAAAg
gi|8 : AATTA--TTCT--TATAACGA-G-TTAA--------TCAT-C-TCTTTATG---ACG-AAA--AA--AAT----CT-CGT--------TAT-AACGAGCT---TATA--A-CT----CG-T--gagatgattaactcgttataagaataattacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|8 : tatctcgtataCTGGCTCATTTTGGGA--------AA--ATAA-----------AAAATAGATTACTC-AATAACGA-G-T-----------TCGC-C-TCGTTATA---ACG-ATG--TAATTA-----TT-CTT-----A----T-AACGAGTT-A--ATC--ATCT----Cacatcgttataacgaggcgaactcgttattgagtaatctattttttattttcccaaaatgagccagcgtttcg
gi|9 : tatctcgtataacgagttataagctcgttataacgagatttttttcgtcataaaACAGTCATCTTGAAAAATAAAAAAAAAT-----TGA--TTCAGTT-GTAACA----ATTCATCTAAAGAGGTTCTATGGGTCTTACAACCTGTAGTATTAGTTTAAAGTATCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcgtttcg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGAGATTCGAAATTACACTAATCGTTTTAGGGAACGTTACCATTCATCTAACCAGAAGTGTCCCAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
Unaligned ( gi|13 ): CATGTAACTACATGTAACTCTTTGTAACAAGTTAACGTTTTTTACTTGCTCAAAAATAAACCCATCCGACGTTCGTACAT
Unaligned ( gi|15 ): CGTAATAAAACACACTGATTTCCTAATTATCAAATTAACGT