lowQualScore : 2222 111 1111 2222 1 111 3333333333333333333 111 111111 22 222222 1 111 2222 1 11 1111 111111 11 111 1 44444444444444444 2222222 33333333333 1111 111 11 1111111 1111 3 2 11 1111111 33 11 11 222 1
lowQualScore : 8 0000 99 111 3 5555 3 6 6 66 0000 6 77 5 0 000 5 88 5 5 7777777777777777777 5 66 7777 2 4 000 666666 6 55 5 5 77 222222 3 1 5 5 4 0 5 5 5 6 9 555 77 6 1 6666 6 11 6 6 1111 999999 6 99 1 6 1 6 6 99 44 6 6 111 6 3 6 6 6 33333333333333333 1111111 11111111111 2222 5 000 44 99 8888888 3333 4 5 8888 5 6 44 6 99 6 6 9999999 99 6 55 6 4 6 1 6 44 11 6 99 6 0 555 5
lowQualScore : . .... .. ... . .... . . . .. .... . .. . . ... . .. . . ................... . .. .... . . ... ...... . .. . . .. ...... . . . . . . . . . . . ... .. . . .... . .. . . .... ...... . .. . . . . . .. .. . . ... . . . . . ................. ....... ........... .... . ... .. .. ....... .... . . .... . . .. . .. . . ....... .. . .. . . . . . .. .. . .. . . ... .
lowQualScore : 0 0000 22 777 0 0000 7 9 4 77 0000 0 99 7 9 000 7 00 7 7 9999999999999999999 0 99 0000 1 3 000 444444 6 00 7 7 99 111111 2 7 7 7 3 1 0 4 7 7 2 333 11 7 0 7777 0 22 7 7 3333 222222 7 55 0 7 0 7 7 22 55 7 7 777 7 3 7 7 7 44444444444444444 7777777 77777777777 1111 7 000 00 22 6666666 0000 3 7 3333 7 0 22 7 22 7 7 2222222 22 7 88 7 2 7 7 7 33 00 7 22 7 8 000 0
consensus : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTT---GTTTACG--TGTG---TNCTAGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-A-T--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTNAGTTTGCAAGCTAT---CAACACC------AGCAC-CCC-GAAATTGA-GCCCATTT--ACTTA------TCACTTTTTCAGGCA-T-ACCTTNAATTCAATATAAAG-TATA-CCAAAAGT-C-T-ATAATTTCTCA-TTACATCAAT-AT-GAAAACG-TCCGTATACA-ATCNT--GT------A-C-GTCTGCTCTTATTATTG-TCACA-T-GATAC--CTGTG-AACGT-CACCTGT-ATTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGGCAN---TTTTTGGATGGGAA-CAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTA-AT-TAA-TGAGGAA-ATCG-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
Reference ( gi|3 ) : TATCGTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTA---GTTTACG--TGTG---TTCTAGG-CTGTTTTCAGGTGTTGACTAC-GTC----ATCTC--TTTTA-CCATAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-A-T--TTTTTCC------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTAT---CAACACC------AGCA--CCC-GAAATTGA-GCCCATTT--ACTTA------TCACTTTTTTAGGCA-T-ACCTTGAATTCAATATAAAG-TATA-CGAAAAGT-T-T-GTAATGTCTCG-TAACATCAGT-AT-GAAAACG-TCCGTATACA-ATCAT--GT------A-C-ATCTGCTCTTATTATTG-TCACA-T-GATAC--CTGTG-AACGT-CACCTGT-ATTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGAT-GGAA-TAAAGGAA-T--TTA-GTTGCTTTTATAAGTAGG-CACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GT--AT-TAA-TGAGGAA-ATCA-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|4 : TATCGTCGAGTGACCAGTTTCAGTGAC
gi|2 : gtcgactgccctatttcagtgactgacctaaatcggtgaccttttgtttacgtgtgtgctaggctgttttcgggtgttgactactcctattacttttatccgtagtgctgtaacatactgggagttcgtattcaatattttttccgataatgaagcacaaagcggttagtttgaagctatcaacaccagcaccccgaattgagcccatttacttatcacttttttaggcataccttgaattcaatataagtatccaaagttctgaatgtctcattcactcagtatagaaaacgtctgagtacaatcagtacgtctgctctattattattcacatggatacctgtgacgtcacctggatttaaaaggtacaccgaaagggtgacgtcacatttccgaattcaatctgacatgtgttttcattacgacatatattcaataatggattaatagattggcagtttttggatgggaataaatgaatttagttgctttataagtaggtacattatttatttattcatccaagtaataatgaggaaatcactgttctaccactaagTATCGTCGACTGCCCTATTTCAGTGACTGACCTATATTCGGTGCTCTTTA---GTTTACG--TGTG---TTCTAGG-CTGTTT-CGGG-GTTGACTAC-ATC----ATCTC--TTTTA-CC-TAG---TGGCTTGTG-AACATA-CTGGGAGTTCGT-ATTCATATT--TTTTTTT------CCGA-TAGTATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTAT---GAACAGC------A-CAACCCC-CAAATTGA-GCCCATTTGCGCGCA------TCAC-TTTTTAGGCATT-ACTTTGAATTCAATATAAAG-T-TA-CCAAAAGTGC-T-GTAATGT-TCA-T-TCATCAGTCAT--AAAACG-TTCCTATATATAACAT--GT------A-TGGTCTGCTCTTATTATTG-TCACATT-GATAC--CTGTG-TAC-T-CACCTGTAATTT-----AAGGT-CACCGAAATAGGCTGACG-TCA-ACATT-TCC-G------------AGCTTCA-------AT-TGA-----------CAT-----TGTTTT-CATTAC---GACGATATATTC--AATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAA-TAAAGGAA-A--TTAGGTTGC--TTATTAGTAGG-TACATTA-T--TTAATATTAATTT---TCAC--TCCA-GTAAAT-T-A-TGAGGAATATCAGTTGTTTT-T--ACAACTAAAGGTC-CCAGAACCTGGTCA-TCGAca
gi|13 : taTCGTCGATTGCCCTATTTTGGTGACTGATCTAAAG-CAGTGACCTTTT---GTTTATG--CGTGAGCTTTT----TTGTTTTCGGGTGTTGACTAT-GAC----AT
gi|6 : CATCGACTGCCCTATTTCGGTGACTGACCGAAAT-CGGTGATCTTTT---GTTTACT--TGTG---TGCTTTG-TTGTTTCTGGG----GACTAT-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTG-AACATA-CTGGGAGTTCGT-ATTCA-T-T--TCTATTT------TCAA-AA--ATGAA--G-CACAAGAAGGTAAGTTTGCAAACTAT---CAACTCC------AGCAC-CCC-GAAATTAA-GCCCATTT--ATTTATCACATTCACTTTTTCAGGCA-T-ACCTTCAGTTTAATATTAAT-TATA-CCAATAGT-C-T-ATAAATTCTCA-TTCCATCAAT-AT-GAACACG-TCAGTATACA-ATCCT--GT------A-C-GTTTGCTATTATTAATG-TCACA-T-GAAACATGTGTG-AATGT-CACTTGT-ATTTAA---AAGGT-CACCGAATTAGGATGATGTTCA-ACATT-T
gi|4 : GTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTT---GTTTACG--TGTG---TGCTAGG-CTGTTTTCGGGTGTTGACTAC--TCCT--ATTAC--TTTTATCCGTAG---TG-C-TGT--AACATA-CTGGGAGTTCGT-ATTCA-A-T--ATTTTTT------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTG-AAGCTAT---CAACACC------AGCA--CCC-CGAATTGA-GCCCATTT--ACTTA------TCACTTTTTTAGGCA-T-ACCTTGAATTCAATAT-AAG-TATC-C--AAAGT-TCT-G-AATGTCTCATTCAC-TCAGT-ATAGAAAACG-TCTGAGTACA-ATCA---GT------A-C-GTCTGCTC-TATTATTATTCACA-TGGATAC--CTGTG--ACGT-CACCTGG-ATTTAA---AAGGTACACCGAAA-GGG-TGACG-TC--ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GAC-ATATATTC--AATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAA-TAAATGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA---T---TCAT--CCAA-GT--AA-TAA-TGAGGAA-ATCA-CTG--TTCT--ACCACT-AAGGTCACTG-AAACTGGTCACTCGACGATAC
gi|5 : GACTGTCCTATTTCGGTGACTGACCTAAAT-CGATGACCTGTT---GTTTTCGCTTGCG---CTTT--G-TTGTTTCCGGGTGTTGACTAC-GTC----ATCGC--TTTTG-CCGTAG---TG-CTTGTA-AATATA-CTGGGAGTTCGT-CTTCA-------------------------A--ATGAA--G-TACGAGAAGGTAAATTTGCAGACTAA---AAACACC------ACCAC-CCC-GAAATTAA-GCCCACTT--GCTTA------TGACTTTTTCAGGCA-T-ACCTTTAATTTGATATAAAG-TATA-CCAAAAGT-C-T-ATAATTTTTCA-CTATATCA
gi|1 : TTTACAGGTATGCG--TGTG---TGCTAGGGCTGTTTTCTGGTATTGACTACCGTCCCCAATCCCCTTTTTA-CCGTAGGTGTG-CTTGTA-A-CATAACTGGGAGTTCGTTATGCA-A-TATTTTTTTT------TCGA-TA--ATGAAAGG-CACAAAGCG-TTACTTTG-AAGCTATGAACAGCACA------ACCA--ACC-GAAATTGAAGCCCATTT--ACTTAT-----TCAC-TTTTCAGGCA-TCCCCTTGAATTC-ATATAACGTTATAGCCAAAAGT-C-TAATAATTTCTAA-TTACATCAATAAT-GAAAACGCTCCGTA-ACA-ATCCTTGGT------AGC-TCCTG--CTTATTATTG-TCG-A-T-GATAC--GTGTATAGCGTCCACCTGT-ATTGAA---AAGGT-CACCG--ATAGG-TGACA-TCACACATTGTCC-ACATACAAAAACCAA-TTCATTTTATCATCCGATTCCAATCGTGCAT----GTGTTTTCCATTACGGGGAAGATATATTCAAAATAATTAGGATTAATAAATATAAGATTGGCCATTTTTTTTGGATGGGAA-TAAAGGAATT--TTA-GCTGCTTTTATAAGTAGGTTGTATTATT--TT-AT-TTA--TTATATTATTCCCAA-GTA-ATATAATTGAG--A-ATCGCCTG--TT-TACACCACT-AAGGTCAC--ACAACTGGTCACTtcttgtcattgtgtgaacgtcacctgtatttaatttaaggtcaccgaaataggtgacgtcaatatttttagtatgcaatctgacaggtgttttaattacgacgatatattcaaatactggattaatagattggtattttttggatgggaacaaaggaatgtagttgctttatagatagatcttataattattattaatccaatgtaattgatgcgaaatcgctactgtcactcgacgtacatttatcaattcaaa
gi|12 : ttcaaactacctgtatagatttcgtctcatatGTTNNNNNNNNNNNNNNNN-NNN----NNNNN--NTTTG-CCGTAG---TG-CTTGTACAACATA-CT-GGAGTTT-T-ATTCATA-T--CCCCTCCCCCCCGCCGATTA--ATGAA--GACACAGAGCAGtac
gi|9 : TCCC--TTTTG-CCGTAG---TG-CTTGGA-AACATA-CTGGGAGTTCGT-ATT-A-A-T--TTTTTTT------CCGA-TA--ATGAA--C-CACAAGAAGGTTAGTTTGCAAGCTAT---CAACACC------AACAC-CCC-GAAATTGA-GCCCATTT--ATTTA------TCACTTTTT
gi|11 : GA-TA--ATGAA--A-CACAAGACAGTAAATTTGCAAGCTAT---CAACACCTGTCTGAGCA--CCCCGAAATTAA-GACCATTT--ACTTG------TCACTTTTTCAGGCA-T-ACCTTTAATTTAA-ATTAAA-TAT
gi|15 : ACTTTTTCAGGCA-T-ACCTTCAATTTAA---AAGG-TATA-CCAAAAGT-C-T-ATAAT
gi|14 : tagggacataaatT-C-T-ATAATTTCTCA-TTACATCAAT-AT-AAAAACG-TCCGTGTACA-ATCCT--GTAATCTGA-C-ATGTGTTTTCATTACGA-T-ATA-T-TATAC--CTt
gi|7 : G-TCCGTATACA-ATCAT--GT------A-C-ATCTGCTCTTCTTATTG-TCACA-T-GATAC--CTGTG-TACGT-CACCTGT-ATTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AG-TTC--------ATCTGA-----------CATGTACGTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AAATTGGCAG---TTTTTGGATGGGAA-TAAAGGAA-T--TTA-GTTGC-TTTATTAGTAG
gi|5 : TGTG-AACGT-CACCTGT-ATTTAATTTAAGGT-CACCGAAATAGG-TGACG-TCA-ATATT-TTTAG------------TA-TGCA-------ATCTGA-----------CAG----GTGTTTT-AATTAC---GACGATATATTC-AAATACT--GGATTAAT-------AGATTGGTAT---TTTTTGGATGGGAA-CAAAGGAA-T--GTA-GTTGC-TTTATAGATAG---ATCTTA-TAATT-A--TTA---T---TAAT--CCAATGTA-AT-TGA-TG-CGAA-ATCG-CT
gi|14 : gactgtcctatttcggtgactgacctaaatcgatgacctgttgttttcgcttgcgctttgttgtttccgggtgttgactacgtcatcgcttttgccgtagtgcttgtaaatatactgggagttcgtcttcaaatgaagtacgagaaggtaaatttgcagactaaaaacaccaccaccccgaaattaagcccacttgcttatgactttttcaggcatacctttaatttgatataaagtataccaaaagtctataatttttcactatatcatcttgtcattgA-------ATCTGA-----------CAT----GTGTTTT-CATT------ACGATATATTactgtcactcgacgtacatttatcaattcaaa
gi|8 : tctataatttctcattacatcaatataaaaacgtccgtgtacaatcctgt----GTATTTT-GATTAC---GATGATATATTC-AAATAAT--GGATTAAC-------AGATTGACAT---TTTTTGGATGGGAA-CAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTA-AT-TGA-TGGGGAA-ATCG-CTG--TT-T--ACCACT-AAGGTCACC-AAAACTGGTCACTCGACGACAatacct
gi|10 : -------AGATTGGCAT---TTTTGGGAT-GGGAGCAAAGGAA-TATTTG-GTTGCTTT-ATAAGTAGG-TACATTA-T--TT-GT-TTA--TT---TCAT--CCAA-GTA-AT-TAA-TGAGGAA-ACAG-CTG--TT-T--ACCGCT-AAGGTCt
gi|16 : T-T--ACCACT-AAGGTCACCG-AAACTGGTCACTTGACGATA-ATAT
Alignments
lowQualScore : 1111 1 111111 111111 222222222 1 1111 1 111111 111 1 11 111 1 333333333333 2222222 33333333333 1111 111 1111111 1 1111111 111
lowQualScore : 6 1 22 5 2 4 5 7777 1 66 5 888 5 55 5 5 0 66 999999 4 66 66 4 1 2 444444 1 66 5 222222222 2 0 5 0000 5 5 5 5 0 8 5 1 88 5 1 5 1 66 444444 5 111 1 5 2 1 0 66 11 5 5 000 5 1 5 5 5 6 444444444444 6 1111111 11111111111 2222 5 000 5 77 6666666 5 777 5 66 5 0 5 0 5 77 5 5 3333333 77 5 77 5 0 5 666 99 5 77 5 666 6
lowQualScore : . . .. . . . . .... . .. . ... . .. . . . .. ...... . .. .. . . . ...... . .. . ......... . . . .... . . . . . . . . .. . . . . .. ...... . ... . . . . . .. .. . . ... . . . . . . ............ . ....... ........... .... . ... . .. ....... . ... . .. . . . . . .. . . ....... .. . .. . . . ... .. . .. . ... .
lowQualScore : 7 0 99 7 1 5 0 5555 6 99 0 888 0 99 0 0 0 99 444444 4 11 11 4 0 5 444444 4 99 0 111111111 2 0 9 0000 0 7 0 0 7 4 7 4 77 0 4 0 0 99 444444 0 111 4 0 5 4 0 99 11 7 7 000 7 4 7 7 7 7 222222222222 7 7777777 77777777777 1111 7 000 7 99 2222222 0 999 0 99 0 0 7 1 7 99 7 7 9999999 99 7 44 7 1 7 000 22 7 99 7 000 7
consensus : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-GAAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
Reference ( family-187 ) : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGTGTGTNCTAGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTNAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTNAATTCAATATAAAG-TATA-CCAAAAGT-CT-ATAATTTCTCATTACA-TCAAT-AT-GAAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAACAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|1 : GTATGCGTGTGTGCTAGGGCTGTTTTCTGGTATTGACTACCGTCCCCAATCCCCTTTTTA-CCGTAGGTGTG-CTTGTA-A-CATAACTGGGAGTTCGTTATGCA-ATATTTTTTTT------TCGA-TA--ATGAAAGG-CACAAAGCG-TTACTTTG-AAGCTATGAACAGC------ACAACCAACCGAAATTGAAGCCCATTTACTT--AT-----TCAC-TTTTCAGGCATCCCCTTGAATTC-ATATAACGTTATAGCCAAAAGT-CTAATAATTTCTAATTACA-TCAATAAT-GAAAACGCTCCGTA-ACA-ATCCTTGGT------AGC-T-CCTG--CTTATTATTG-TCG-AT-GATAC--GTGTATAGCGTCCACCTGTA-TTGAA---AAGGT-CACCG--ATAGG-TGACA-TCACACATTGTCC-ACATACAAAAACCAA-TTCATTTTATCATCCGATTCCAATCGTGCAT----GTGTTTTCCATTACGGGGAAGATATATTCAAAATAATTAGGATTAATAAATATAAGATTGGCCATTTTTTTTGGATGGGAATAAAGGAATT--TTA-GCTGCTTTTATAAGTAGGTTGTATTATT--TT-AT-TTA--TTATATTATTCCCAA-GTAATATAATTGAG--A-ATC-GCCTG--TT-TACACCACT-AAGGTCAC--ACAACTGGTCACT
gi|10 : ttcaaactacctgtatagatttcgtctcatattttacag-------AGATTGG-CA--TTTTTGGGATGGGAGCAAAGGAA-TATTTG-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-GT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ACA-G-CTG--TT-T--ACCGCT-AAGGTCtac
gi|11 : GA-TA--ATGAA--A-CACAAGACAGTAAATTTGCAAGCTATCAACACCTGTCTGAGCACC--CCGAAATTAA-GACCATTTACTT--G------TCACTTTTTCAGGCAT-ACCTTTAATTTAA-ATTAAA-TAT
gi|12 : GTTNNNNNNNNNNNNNNNN-NNN----NNNNN--NTTTG-CCGTAG---TG-CTTGTACAACATA-CT-GGAGTTT-T-ATTCATAT--CCCCTCCCCCCCGCCGATTA--ATGAA--GACACAGAGCAG
gi|13 : TCGTCGATTGCCCTATTTTGGTGACTGATCTAAAG-CAGTGACCTTTTGTTTATGCGTGAGCTTTT-TTGTTTTCGGGTGTTGACTAT-GAC----AT
gi|14 : T-CT-ATAATTTCTCATTACA-TCAAT-AT-AAAAACG-TCCGTGTACA-ATCCT--GTAATCTGA-C-A-TGTGTTTTCATTACGA-T-ATAT-TATAC--CT
gi|15 : ACTTTTTCAGGCAT-ACCTTCAATTTAA---AAGG-TATA-CCAAAAGT-CT-ATAATT
gi|16 : tagggacataaatT-T--ACCACT-AAGGTCACCG-AAACTGGTCACTTGACGATA-ATAT
gi|2 : TATCGTCGACTGCCCTATTTCAGTGACTGACCTATATTCGGTGCTCTTTAGTTTACGTGTGTTCTAGG-CTGTTT-CGGG-GTTGACTAC-ATC----ATCTC--TTTTA-CC-TAG---TGGCTTGTG-AACATA-CTGGGAGTTCGT-ATTCATAT--TTTTTTTT-----CCGA-TAGTATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATGAACAGC------ACAACC--CCCAAATTGA-GCCCATTTGCGCGCA------TCACTTTTT-AGGCATTACTTTGAATTCAATATAAAG-T-TA-CCAAAAGTGCT-GTAATGT-TCATT-CA-TCAGTCAT--AAAACG-TTCCTATATATAACAT--GT------A-T-GGTCTGCTCTTATTATTG-TCACATTGATAC--CTGTG-TAC-T-CACCTGTAATTTAA-----GGT-CACCGAAATAGGCTGACG-TCA-ACATT-TCC-G------------AGCTTCA-------AT-TGA-----------CAT-----TGTTTT-CATTAC---GACGATATATTC-AA-TAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-A--TTAGGTTGC--TTATTAGTAGG-TACATTA-T--TTAATATTAATTT---TCAC--TCCA-GTAAA-TTA-TGAGGAATATCAG-TTGTTTT-T--ACAACTAAAGGTC-CCAGAACCTGGTCA-TCGAtc
gi|3 : taTATCGTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTAGTTTACGTGTGTTCTAGG-CTGTTTTCAGGTGTTGACTAC-GTC----ATCTC--TTTTA-CCATAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTCC------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--C-GAAATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CGAAAAGT-TT-GTAATGTCTCGTAACA-TCAGT-AT-GAAAACG-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGAT-GGAATAAAGGAA-T--TTA-GTTGCTTTTATAAGTAGG-CACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GT-AT-TAA-TGAGGAA-ATC-A-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|4 : GTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGTGTGTGCTAGG-CTGTTTTCGGGTGTTGACTAC--TCCT--ATTAC--TTTTATCCGTAG---TG-C-TGT--AACATA-CTGGGAGTTCGT-ATTCA-AT--ATTTTTT------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTG-AAGCTATCAACACC------AGCACC--CCG-AATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATAT-AAG-TAT--CCAAAGTT-CT-G-AATGTCTCATT-CACTCAGT-ATAGAAAACG-TCTGAGTACA-ATCA---GT------A-C-G-TCTGCTC-TATTATTATTCACATGGATAC--CTGTG--ACGT-CACCTGGA-TTTAA---AAGGTACACCGAAA-GGG-TGACG-TC--ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GAC-ATATATTC--AATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAATGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA---T---TCAT--CCAA-GTAA--TAA-TGAGGAA-ATC-A-CTG--TTCT--ACCACT-AAGGTCACTG-AAACTGGTCACTCGACGATAC
gi|5 : GACTGTCCTATTTCGGTGACTGACCTAAAT-CGATGACCTGTTGTTTTCGCTTGCGCTTTG-TTGTTTCCGGGTGTTGACTAC-GTC----ATCGC--TTTTG-CCGTAG---TG-CTTGTA-AATATA-CTGGGAGTTCGT-CTTCA-A-------------------------ATGAA--G-TACGAGAAGGTAAATTTGCAGACTAAAAACACC------ACCACC--CCGAAATTAA-GCC-------------------CACTTGCTTATG----ACTTT---TTCAG------G-CATA-CC--------T-TTAATTTGATATAAAG-T--AT-AC-CAAAA-G-TC----TATA-ATTTT--TC------A-CTA-TATCATCTTGTCATTG-T---------------GTG-AACGT-CACCTGTA-TTTAATTTAAGGT-CACCGAAATAGG-TGACG-TCA-ATATT-TTTAG------------TA-TGCA-------ATCTGA-----------CAG----GTGTTTT-AATTAC---GACGATATATTC-AAATACT--GGATTAAT-------AGATTGG-TA--TTTTTTGGATGGGAACAAAGGAA-T--GTA-GTTGC-TTTATAGATAGA-T-C-TTA-TAATT-A--TTA---T---TAAT--CCAATGTAAT-TGA-TG-CGAA-ATC-G-CT
gi|6 : CATCGACTGCCCTATTTCGGTGACTGACCGAAAT-CGGTGATCTTTTGTTTACTTGTGTGCTTTG-TTGTTTCTGGG----GACTAT-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTG-AACATA-CTGGGAGTTCGT-ATTCA-TT--TCTATTT------TCAA-AA--ATGAA--G-CACAAGAAGGTAAGTTTGCAAACTATCAACTCC------AGCACC--CCGAAATTAA-GCCCATTTATTT--ATCACATTCACTTTTTCAGGCAT-ACCTTCAGTTTAATATTAAT-TATA-CCAATAGT-CT-ATAAATTCTCATTCCA-TCAAT-AT-GAACACG-TCAGTATACA-ATCCT--GT------A-C-G-TTTGCTATTATTAATG-TCACAT-GAAACATGTGTG-AATGT-CACTTGTA-TTTAA---AAGGT-CACCGAATTAGGATGATGTTCA-ACATT-Tactgtcactcgacgtacatttatcaattcaaa
gi|7 : G-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTCTTATTG-TCACAT-GATAC--CTGTG-TACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AG-TTC--------ATCTGA-----------CATGTACGTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AAATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATTAGTAG
gi|8 : ----GTATTTT-GATTAC---GATGATATATTC-AAATAAT--GGATTAAC-------AGATTGA-CA--TTTTTTGGATGGGAACAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TGA-TGGGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACC-AAAACTGGTCACTCGACGACA
gi|9 : TCCC--TTTTG-CCGTAG---TG-CTTGGA-AACATA-CTGGGAGTTCGT-ATT-A-AT--TTTTTTT------CCGA-TA--ATGAA--C-CACAAGAAGGTTAGTTTGCAAGCTATCAACACC------AACACC--CCGAAATTGA-GCCCATTTATTT--A------TCACTTTTTt
Alignments
lowQualScore : 1111 1 111111 111111 222222222 1 1111 1 1111 111111 111 1 11 111 1 333333333333 2222222 33333333333 1111 111 1111111 1 1111111 111
lowQualScore : 6 1 11 5 2 4 5 7777 1 66 5 888 5 55 5 5 0 66 999999 4 66 66 4 0 2 444444 1 66 5 111111111 3 5 5 0000 5 5 5 66 0 8 5 1 5555 5 1 5 1 66 444444 5 111 1 5 2 1 0 66 11 5 5 000 5 1 5 5 5 6 444444444444 6 1111111 11111111111 2222 5 000 5 77 6666666 5 777 5 66 5 0 5 0 5 77 5 5 3333333 77 5 77 5 0 5 666 99 5 77 5 666 6
lowQualScore : . . .. . . . . .... . .. . ... . .. . . . .. ...... . .. .. . . . ...... . .. . ......... . . . .... . . . .. . . . . .... . . . . .. ...... . ... . . . . . .. .. . . ... . . . . . . ............ . ....... ........... .... . ... . .. ....... . ... . .. . . . . . .. . . ....... .. . .. . . . ... .. . .. . ... .
lowQualScore : 7 4 77 7 1 5 0 5555 6 99 0 888 0 99 0 0 0 99 444444 4 11 11 4 8 5 444444 4 99 0 000000000 4 0 6 0000 0 7 0 11 7 4 7 4 3333 0 4 0 0 99 444444 0 111 4 0 5 4 0 99 11 7 7 000 7 4 7 7 7 7 222222222222 7 7777777 77777777777 1111 7 000 7 99 2222222 0 999 0 99 0 0 7 1 7 99 7 7 9999999 99 7 44 7 1 7 000 22 7 99 7 000 7
consensus : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
Reference ( family-187 ) : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|1 : GTATGCGTGTGTGCTAGGGCTGTTTTCTGGTATTGACTACCGTCCCCAATCCCCTTTTTA-CCGTAGGTGTG-CTTGTA-A-CATAACTGGGAGTTCGTTATGCA-ATATTTTTTTT------TCGA-TA--ATGAAAGG-CACAAAGCG-TTACTTTG-AAGCTATGAACAGC------ACAACCAACCGAAATTGAAGCCCATTTACTT--AT-----TCAC-TTTTCAGGCATCCCCTTGAATTC-ATATAACGTTATAGCCAAAAGT-CTAATAATTTCTAATTACA-TCAATAAT-G--AAAACGCTCCGTA-ACA-ATCCTTGGT------AGC-T-CCTG--CTTATTATTG-TCG-AT-GATAC--GTGTATAGCGTCCACCTGTA-TTGAA---AAGGT-CACCG--ATAGG-TGACA-TCACACATTGTCC-ACATACAAAAACCAA-TTCATTTTATCATCCGATTCCAATCGTGCAT----GTGTTTTCCATTACGGGGAAGATATATTCAAAATAATTAGGATTAATAAATATAAGATTGGCCATTTTTTTTGGATGGGAATAAAGGAATT--TTA-GCTGCTTTTATAAGTAGGTTGTATTATT--TT-AT-TTA--TTATATTATTCCCAA-GTAATATAATTGAG--A-ATC-GCCTG--TT-TACACCACT-AAGGTCAC--ACAACTGGTCACT
gi|10 : ttcaaactacctgtatagatttcgtctcatattttacag-------AGATTGG-CA--TTTTTGGGATGGGAGCAAAGGAA-TATTTG-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-GT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ACA-G-CTG--TT-T--ACCGCT-AAGGTCtac
gi|11 : GA-TA--ATGAA--A-CACAAGACAGTAAATTTGCAAGCTATCAACACCTGTCTGAGCACC--CCGAAATTAA-GACCATTTACTT--G------TCACTTTTTCAGGCAT-ACCTTTAATTTAA-ATTAAA-TAT
gi|12 : GTTNNNNNNNNNNNNNNNN-NNN----NNNNN--NTTTG-CCGTAG---TG-CTTGTACAACATA-CT-GGAGTTT-T-ATTCATAT--CCCCTCCCCCCCGCCGATTA--ATGAA--GACACAGAGCAG
gi|13 : TCGTCGATTGCCCTATTTTGGTGACTGATCTAAAG-CAGTGACCTTTTGTTTATGCGTGAGCTTTT-TTGTTTTCGGGTGTTGACTAT-GAC----AT
gi|14 : T-CT-ATAATTTCTCATTACA-TCAAT-AT-A--AAAACG-TCCGTGTACA-ATCCT--GTAATCTGA-C-A-TGTGTTTTCATTACGA-T-ATAT-TATAC--CT
gi|15 : ACTTTTTCAGGCAT-ACCTTCAATTTAA---AAGG-TATA-CCAAAAGT-CT-ATAATT
gi|16 : tagggacataaatT-T--ACCACT-AAGGTCACCG-AAACTGGTCACTTGACGATA-ATAT
gi|2 : TATCGTCGACTGCCCTATTTCAGTGACTGACCTATATTCGGTGCTCTTTAGTTTACGTGTGTTCTAGG-CTGTTT-CGGG-GTTGACTAC-ATC----ATCTC--TTTTA-CC-TAG---TGGCTTGTG-AACATA-CTGGGAGTTCGT-ATTCATAT--TTTTTTTT-----CCGA-TAGTATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATGAACAGC------ACAACC--CCCAAATTGA-GCCCATTTGCGCGCA------TCACTTTTT-AGGCATTACTTTGAATTCAATATAAAG-T-TA-CCAAAAGTGCT-GTAATGT-TCATT-CA-TCAGTCAT----AAAACG-TTCCTATATATAACAT--GT------A-T-GGTCTGCTCTTATTATTG-TCACATTGATAC--CTGTG-TAC-T-CACCTGTAATTTAA-----GGT-CACCGAAATAGGCTGACG-TCA-ACATT-TCC-G------------AGCTTCA-------AT-TGA-----------CAT-----TGTTTT-CATTAC---GACGATATATTC-AA-TAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-A--TTAGGTTGC--TTATTAGTAGG-TACATTA-T--TTAATATTAATTT---TCAC--TCCA-GTAAA-TTA-TGAGGAATATCAG-TTGTTTT-T--ACAACTAAAGGTC-CCAGAACCTGGTCA-TCGAtc
gi|3 : taTATCGTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTAGTTTACGTGTGTTCTAGG-CTGTTTTCAGGTGTTGACTAC-GTC----ATCTC--TTTTA-CCATAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTCC------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--C-GAAATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CGAAAAGT-TT-GTAATGTCTCGTAACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGAT-GGAATAAAGGAA-T--TTA-GTTGCTTTTATAAGTAGG-CACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GT-AT-TAA-TGAGGAA-ATC-A-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|4 : GTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGTGTGTGCTAGG-CTGTTTTCGGGTGTTGACTAC--TCCT--ATTAC--TTTTATCCGTAG---TG-C-TGT--AACATA-CTGGGAGTTCGT-ATTCA-AT--ATTTTTT------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTG-AAGCTATCAACACC------AGCACC--CCG-AATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATAT-AAG-TAT--CCAAAGTT-CT-G-AATGTCTCATT-CACTCAGT-ATAG--AAAACG-TCTGAGTACA-ATCA---GT------A-C-G-TCTGCTC-TATTATTATTCACATGGATAC--CTGTG--ACGT-CACCTGGA-TTTAA---AAGGTACACCGAAA-GGG-TGACG-TC--ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GAC-ATATATTC--AATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAATGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA---T---TCAT--CCAA-GTAA--TAA-TGAGGAA-ATC-A-CTG--TTCT--ACCACT-AAGGTCACTG-AAACTGGTCACTCGACGATAC
gi|5 : GACTGTCCTATTTCGGTGACTGACCTAAAT-CGATGACCTGTTGTTTTCGCTTGCGCTTTG-TTGTTTCCGGGTGTTGACTAC-GTC----ATCGC--TTTTG-CCGTAG---TG-CTTGTA-AATATA-CTGGGAGTTCGT-CTTCA-A-------------------------ATGAA--G-TACGAGAAGGTAAATTTGCAGACTAAAAACACC------ACCACC--CCGAAATTAA-GCCC----ACTT--G---------CTT--------ATGACTTT---TTCAG------G-CATA-CC--------T-TTAATTTGATATAA-----AGT-AT-ACCAAAA-G-TC----TATA-ATTTT--TC------A-CTA-TATCATCTTGTCATTG-T---------------GTG-AACGT-CACCTGTA-TTTAATTTAAGGT-CACCGAAATAGG-TGACG-TCA-ATATT-TTTAG------------TA-TGCA-------ATCTGA-----------CAG----GTGTTTT-AATTAC---GACGATATATTC-AAATACT--GGATTAAT-------AGATTGG-TA--TTTTTTGGATGGGAACAAAGGAA-T--GTA-GTTGC-TTTATAGATAGA-T-C-TTA-TAATT-A--TTA---T---TAAT--CCAATGTAAT-TGA-TG-CGAA-ATC-G-CT
gi|6 : CATCGACTGCCCTATTTCGGTGACTGACCGAAAT-CGGTGATCTTTTGTTTACTTGTGTGCTTTG-TTGTTTCTGGG----GACTAT-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTG-AACATA-CTGGGAGTTCGT-ATTCA-TT--TCTATTT------TCAA-AA--ATGAA--G-CACAAGAAGGTAAGTTTGCAAACTATCAACTCC------AGCACC--CCGAAATTAA-GCCCATTTATTT--ATCACATTCACTTTTTCAGGCAT-ACCTTCAGTTTAATATTAAT-TATA-CCAATAGT-CT-ATAAATTCTCATTCCA-TCAAT-AT-G--AACACG-TCAGTATACA-ATCCT--GT------A-C-G-TTTGCTATTATTAATG-TCACAT-GAAACATGTGTG-AATGT-CACTTGTA-TTTAA---AAGGT-CACCGAATTAGGATGATGTTCA-ACATT-Tactgtcactcgacgtacatttatcaattcaaa
gi|7 : G-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTCTTATTG-TCACAT-GATAC--CTGTG-TACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AG-TTC--------ATCTGA-----------CATGTACGTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AAATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATTAGTAG
gi|8 : ----GTATTTT-GATTAC---GATGATATATTC-AAATAAT--GGATTAAC-------AGATTGA-CA--TTTTTTGGATGGGAACAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TGA-TGGGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACC-AAAACTGGTCACTCGACGACA
gi|9 : TCCC--TTTTG-CCGTAG---TG-CTTGGA-AACATA-CTGGGAGTTCGT-ATT-A-AT--TTTTTTT------CCGA-TA--ATGAA--C-CACAAGAAGGTTAGTTTGCAAGCTATCAACACC------AACACC--CCGAAATTGA-GCCCATTTATTT--A------TCACTTTTTt
Alignments
lowQualScore : 1111 1 111111 111111 222222222 1 1111 1 1111 111111 111 1 11 111 1 333333333333 2222222 33333333333 1111 111 1111111 1 1111111 111
lowQualScore : 6 1 11 5 2 4 5 7777 1 66 5 888 5 55 5 5 0 66 999999 4 66 66 4 0 2 444444 1 66 5 111111111 3 5 5 0000 5 5 5 66 0 8 5 1 5555 5 1 5 1 66 444444 5 111 1 5 2 1 0 66 11 5 5 000 5 1 5 5 5 6 444444444444 6 1111111 11111111111 2222 5 000 5 77 6666666 5 777 5 66 5 0 5 0 5 77 5 5 3333333 77 5 77 5 0 5 666 99 5 77 5 666 6
lowQualScore : . . .. . . . . .... . .. . ... . .. . . . .. ...... . .. .. . . . ...... . .. . ......... . . . .... . . . .. . . . . .... . . . . .. ...... . ... . . . . . .. .. . . ... . . . . . . ............ . ....... ........... .... . ... . .. ....... . ... . .. . . . . . .. . . ....... .. . .. . . . ... .. . .. . ... .
lowQualScore : 7 4 77 7 1 5 0 5555 6 99 0 888 0 99 0 0 0 99 444444 4 11 11 4 8 5 444444 4 99 0 000000000 4 0 6 0000 0 7 0 11 7 4 7 4 3333 0 4 0 0 99 444444 0 111 4 0 5 4 0 99 11 7 7 000 7 4 7 7 7 7 222222222222 7 7777777 77777777777 1111 7 000 7 99 2222222 0 999 0 99 0 0 7 1 7 99 7 7 9999999 99 7 44 7 1 7 000 22 7 99 7 000 7
consensus : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
Reference ( family-187 ) : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|1 : GTATGCGTGTGTGCTAGGGCTGTTTTCTGGTATTGACTACCGTCCCCAATCCCCTTTTTA-CCGTAGGTGTG-CTTGTA-A-CATAACTGGGAGTTCGTTATGCA-ATATTTTTTTT------TCGA-TA--ATGAAAGG-CACAAAGCG-TTACTTTG-AAGCTATGAACAGC------ACAACCAACCGAAATTGAAGCCCATTTACTT--AT-----TCAC-TTTTCAGGCATCCCCTTGAATTC-ATATAACGTTATAGCCAAAAGT-CTAATAATTTCTAATTACA-TCAATAAT-G--AAAACGCTCCGTA-ACA-ATCCTTGGT------AGC-T-CCTG--CTTATTATTG-TCG-AT-GATAC--GTGTATAGCGTCCACCTGTA-TTGAA---AAGGT-CACCG--ATAGG-TGACA-TCACACATTGTCC-ACATACAAAAACCAA-TTCATTTTATCATCCGATTCCAATCGTGCAT----GTGTTTTCCATTACGGGGAAGATATATTCAAAATAATTAGGATTAATAAATATAAGATTGGCCATTTTTTTTGGATGGGAATAAAGGAATT--TTA-GCTGCTTTTATAAGTAGGTTGTATTATT--TT-AT-TTA--TTATATTATTCCCAA-GTAATATAATTGAG--A-ATC-GCCTG--TT-TACACCACT-AAGGTCAC--ACAACTGGTCACT
gi|10 : ttcaaactacctgtatagatttcgtctcatattttacag-------AGATTGG-CA--TTTTTGGGATGGGAGCAAAGGAA-TATTTG-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-GT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ACA-G-CTG--TT-T--ACCGCT-AAGGTCtac
gi|11 : GA-TA--ATGAA--A-CACAAGACAGTAAATTTGCAAGCTATCAACACCTGTCTGAGCACC--CCGAAATTAA-GACCATTTACTT--G------TCACTTTTTCAGGCAT-ACCTTTAATTTAA-ATTAAA-TAT
gi|12 : GTTNNNNNNNNNNNNNNNN-NNN----NNNNN--NTTTG-CCGTAG---TG-CTTGTACAACATA-CT-GGAGTTT-T-ATTCATAT--CCCCTCCCCCCCGCCGATTA--ATGAA--GACACAGAGCAG
gi|13 : TCGTCGATTGCCCTATTTTGGTGACTGATCTAAAG-CAGTGACCTTTTGTTTATGCGTGAGCTTTT-TTGTTTTCGGGTGTTGACTAT-GAC----AT
gi|14 : T-CT-ATAATTTCTCATTACA-TCAAT-AT-A--AAAACG-TCCGTGTACA-ATCCT--GTAATCTGA-C-A-TGTGTTTTCATTACGA-T-ATAT-TATAC--CT
gi|15 : ACTTTTTCAGGCAT-ACCTTCAATTTAA---AAGG-TATA-CCAAAAGT-CT-ATAATT
gi|16 : tagggacataaatT-T--ACCACT-AAGGTCACCG-AAACTGGTCACTTGACGATA-ATAT
gi|2 : TATCGTCGACTGCCCTATTTCAGTGACTGACCTATATTCGGTGCTCTTTAGTTTACGTGTGTTCTAGG-CTGTTT-CGGG-GTTGACTAC-ATC----ATCTC--TTTTA-CC-TAG---TGGCTTGTG-AACATA-CTGGGAGTTCGT-ATTCATAT--TTTTTTTT-----CCGA-TAGTATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATGAACAGC------ACAACC--CCCAAATTGA-GCCCATTTGCGCGCA------TCACTTTTT-AGGCATTACTTTGAATTCAATATAAAG-T-TA-CCAAAAGTGCT-GTAATGT-TCATT-CA-TCAGTCAT----AAAACG-TTCCTATATATAACAT--GT------A-T-GGTCTGCTCTTATTATTG-TCACATTGATAC--CTGTG-TAC-T-CACCTGTAATTTAA-----GGT-CACCGAAATAGGCTGACG-TCA-ACATT-TCC-G------------AGCTTCA-------AT-TGA-----------CAT-----TGTTTT-CATTAC---GACGATATATTC-AA-TAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-A--TTAGGTTGC--TTATTAGTAGG-TACATTA-T--TTAATATTAATTT---TCAC--TCCA-GTAAA-TTA-TGAGGAATATCAG-TTGTTTT-T--ACAACTAAAGGTC-CCAGAACCTGGTCA-TCGAtc
gi|3 : taTATCGTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTAGTTTACGTGTGTTCTAGG-CTGTTTTCAGGTGTTGACTAC-GTC----ATCTC--TTTTA-CCATAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTCC------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--C-GAAATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CGAAAAGT-TT-GTAATGTCTCGTAACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGAT-GGAATAAAGGAA-T--TTA-GTTGCTTTTATAAGTAGG-CACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GT-AT-TAA-TGAGGAA-ATC-A-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
gi|4 : GTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGTGTGTGCTAGG-CTGTTTTCGGGTGTTGACTAC--TCCT--ATTAC--TTTTATCCGTAG---TG-C-TGT--AACATA-CTGGGAGTTCGT-ATTCA-AT--ATTTTTT------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTG-AAGCTATCAACACC------AGCACC--CCG-AATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATAT-AAG-TAT--CCAAAGTT-CT-G-AATGTCTCATT-CACTCAGT-ATAG--AAAACG-TCTGAGTACA-ATCA---GT------A-C-G-TCTGCTC-TATTATTATTCACATGGATAC--CTGTG--ACGT-CACCTGGA-TTTAA---AAGGTACACCGAAA-GGG-TGACG-TC--ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GAC-ATATATTC--AATAAT--GGATTAAT-------AGATTGG-CA--GTTTTTGGATGGGAATAAATGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA---T---TCAT--CCAA-GTAA--TAA-TGAGGAA-ATC-A-CTG--TTCT--ACCACT-AAGGTCACTG-AAACTGGTCACTCGACGATAC
gi|5 : GACTGTCCTATTTCGGTGACTGACCTAAAT-CGATGACCTGTTGTTTTCGCTTGCGCTTTG-TTGTTTCCGGGTGTTGACTAC-GTC----ATCGC--TTTTG-CCGTAG---TG-CTTGTA-AATATA-CTGGGAGTTCGT-CTTCA-A-------------------------ATGAA--G-TACGAGAAGGTAAATTTGCAGACTAAAAACACC------ACCACC--CCGAAATTAA-GCCC----ACTT--G---------CTT--------ATGACTTT---TTCAG------G-CATA-CC--------T-TTAATTTGATATAA-----AGT-AT-ACCAAAA-G-TC----TATA-ATTTT--TC------A-CTA-TATCATCTTGTCATTG-T---------------GTG-AACGT-CACCTGTA-TTTAATTTAAGGT-CACCGAAATAGG-TGACG-TCA-ATATT-TTTAG------------TA-TGCA-------ATCTGA-----------CAG----GTGTTTT-AATTAC---GACGATATATTC-AAATACT--GGATTAAT-------AGATTGG-TA--TTTTTTGGATGGGAACAAAGGAA-T--GTA-GTTGC-TTTATAGATAGA-T-C-TTA-TAATT-A--TTA---T---TAAT--CCAATGTAAT-TGA-TG-CGAA-ATC-G-CT
gi|6 : CATCGACTGCCCTATTTCGGTGACTGACCGAAAT-CGGTGATCTTTTGTTTACTTGTGTGCTTTG-TTGTTTCTGGG----GACTAT-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTG-AACATA-CTGGGAGTTCGT-ATTCA-TT--TCTATTT------TCAA-AA--ATGAA--G-CACAAGAAGGTAAGTTTGCAAACTATCAACTCC------AGCACC--CCGAAATTAA-GCCCATTTATTT--ATCACATTCACTTTTTCAGGCAT-ACCTTCAGTTTAATATTAAT-TATA-CCAATAGT-CT-ATAAATTCTCATTCCA-TCAAT-AT-G--AACACG-TCAGTATACA-ATCCT--GT------A-C-G-TTTGCTATTATTAATG-TCACAT-GAAACATGTGTG-AATGT-CACTTGTA-TTTAA---AAGGT-CACCGAATTAGGATGATGTTCA-ACATT-Tactgtcactcgacgtacatttatcaattcaaa
gi|7 : G-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTCTTATTG-TCACAT-GATAC--CTGTG-TACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AG-TTC--------ATCTGA-----------CATGTACGTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AAATTGG-CA--GTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATTAGTAG
gi|8 : ----GTATTTT-GATTAC---GATGATATATTC-AAATAAT--GGATTAAC-------AGATTGA-CA--TTTTTTGGATGGGAACAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TGA-TGGGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACC-AAAACTGGTCACTCGACGACA
gi|9 : TCCC--TTTTG-CCGTAG---TG-CTTGGA-AACATA-CTGGGAGTTCGT-ATT-A-AT--TTTTTTT------CCGA-TA--ATGAA--C-CACAAGAAGGTTAGTTTGCAAGCTATCAACACC------AACACC--CCGAAATTGA-GCCCATTTATTT--A------TCACTTTTTt
blockSeqs : T C TT . N N . CT N . T . G AC . . T . CCCCCG T GT . A C TGTCTG G . . ATCACAT C T T TATA . . G A A C C ACC . C T C . AATCTG . GG T T C T T AT T . A TTT A C T . . A . C . . GTAC . . . . . . T . AT G T . . AA A A ATTT . T T . T AG TT C . A CAG C
blockSeqs : . T AG . T T . . T . . . . G . . T . T . . . . C . C . . GCA C G C TATA . . . A A . . AG . C . A . . . TA C . C C G . A . . . . A . . . . . . . . . . . . . . . G . . . . . . . . . TT . . A . . G . . . . CGA C
blockSeqs : . T AG . T T . . T . . . . A . . . . . . . . . C . G . . G T . G TATT . . . G A . . A . C . A . . . A C . C C . . A . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . TT . . T . . A . . . . CG
blockSeqs : . T AG . T T . . A . . . . A . . . . . . . . . C . G . . A T . G ATT . . . G C . . G . T . A . . . A C . C C . . A . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . TT . . T . . A . . . . TG
blockSeqs : . C TT . C T . . G . . . . G . . . . . . . . . C . C . . A C . G TAT . . . G . . . G . A . T . . . G A . C C . . T . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . T . . T . . G . . . . CA
blockSeqs : T TT . C . . . C . . . . A . . . . . . . . . C . G . . G . . C A . . . T . . . . . C . C . . . G C . . C . . . . . . . . . . . . . . . . . . G . . . . . . . . . T . . . . . G . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . A . . A . . . . . . A . . . A . . . A C . . . . . . . T . . . .
blockSeqs : . . . .
blockSeqCons : **** ** *** ** ** ** A******** G* ** A* ************ ******* *********** *** ** ******* G** TT***** ** T* G** ** CG*
originalCons : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CA--NTTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCACCGAAAACTGGTCACTCGACGATACATAT
finalCons : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTTA--------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CTG-TAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTGA-ACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGG-CAG--TTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTATT-----TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATCG--CTG--TT-T--ACCACT-AAGGTCACCG-AAACTGGTCACTCGACGATACATAT
Alignments
lowQualScore : 1111 1 111111 111111 222222222 1 1111 1 1111 111111 111 1 11 111 1 333333333333 2222222 33333333333 1111 111 1111111 1111 1 1111111 1111
lowQualScore : 6 1 11 5 2 4 5 7777 1 66 5 888 5 55 5 5 0 66 999999 4 66 66 4 0 2 444444 1 66 5 111111111 3 5 5 0000 5 5 5 66 0 8 5 1 5555 5 1 5 1 66 444444 5 111 1 5 2 1 0 66 11 5 5 000 5 1 5 5 5 6 444444444444 6 1111111 11111111111 2222 5 000 5 77 6666666 0000 5 66 5 0 5 0 5 77 5 5 3333333 77 5 77 5 0 5 666 99 5 77 5 1111 6
lowQualScore : . . .. . . . . .... . .. . ... . .. . . . .. ...... . .. .. . . . ...... . .. . ......... . . . .... . . . .. . . . . .... . . . . .. ...... . ... . . . . . .. .. . . ... . . . . . . ............ . ....... ........... .... . ... . .. ....... .... . .. . . . . . .. . . ....... .. . .. . . . ... .. . .. . .... .
lowQualScore : 7 4 77 7 1 5 0 5555 6 99 0 888 0 99 0 0 0 99 444444 4 11 11 4 8 5 444444 4 99 0 000000000 4 0 6 0000 0 7 0 11 7 4 7 4 3333 0 4 0 0 99 444444 0 111 4 0 5 4 0 99 11 7 7 000 7 4 7 7 7 7 222222222222 7 7777777 77777777777 1111 7 000 7 99 2222222 1111 0 99 0 0 7 1 7 99 7 7 9999999 99 7 44 7 1 7 000 22 7 99 7 2222 7
consensus : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCAC-CG-AAACTGGTCACTCGACGATACATAT
Reference ( family-187 ) : TATCGTCGACTGCCCTATTTCGGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGCGTGTGCTNGG-CTGTTTTCGGGTGTTGACTAC-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTTT------CCGA-TA--ATGAA--G-CACAAGGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--CCGAAATTGA-GCCCATTTACTT--A------TCACTTTTTCAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CCAAAAGT-CT-GTAATTTCTCATTACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCNT--GT------A-C-G-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCAC-CG-AAACTGGTCACTCGACGATACATAT
gi|1 : GTATGCGTGTGTGCTAGGGCTGTTTTCTGGTATTGACTACCGTCCCCAATCCCCTTTTTA-CCGTAGGTGTG-CTTGTA-A-CATAACTGGGAGTTCGTTATGCA-ATATTTTTTTT------TCGA-TA--ATGAAAGG-CACAAAGCG-TTACTTTG-AAGCTATGAACAGC------ACAACCAACCGAAATTGAAGCCCATTTACTT--AT-----TCAC-TTTTCAGGCATCCCCTTGAATTC-ATATAACGTTATAGCCAAAAGT-CTAATAATTTCTAATTACA-TCAATAAT-G--AAAACGCTCCGTA-ACA-ATCCTTGGT------AGC-T-CCTG--CTTATTATTG-TCG-AT-GATAC--GTGTATAGCGTCCACCTGTA-TTGAA---AAGGT-CACCG--ATAGG-TGACA-TCACACATTGTCC-ACATACAAAAACCAA-TTCATTTTATCATCCGATTCCAATCGTGCAT----GTGTTTTCCATTACGGGGAAGATATATTCAAAATAATTAGGATTAATAAATATAAGATTGGCCATTTTTTTTGGATGGGAATAAAGGAATT--TTA-GCTGCTTTTATAAGTAGGTTGTATTATT--TT-AT-TTA--TTATATTATTCCCAA-GTAATATAATTGAG--A-ATC-GCCTG--TT-TACACCACT-AAGGTCACAC---AACTGGTCACT
gi|10 : ttcaaactacctgtatagatttcgtctcatattttacag-------AGATTGGCAT---TTTTGGGATGGGAGCAAAGGAA-TATTTG-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-GT-TTA--TT---TCAT--CCAA-GTAAT-TAA-TGAGGAA-ACA-G-CTG--TT-T--ACCGCT-AAGGTCtac
gi|11 : GA-TA--ATGAA--A-CACAAGACAGTAAATTTGCAAGCTATCAACACCTGTCTGAGCACC--CCGAAATTAA-GACCATTTACTT--G------TCACTTTTTCAGGCAT-ACCTTTAATTTAA-ATTAAA-TAT
gi|12 : GTTNNNNNNNNNNNNNNNN-NNN----NNNNN--NTTTG-CCGTAG---TG-CTTGTACAACATA-CT-GGAGTTT-T-ATTCATAT--CCCCTCCCCCCCGCCGATTA--ATGAA--GACACAGAGCAG
gi|13 : TCGTCGATTGCCCTATTTTGGTGACTGATCTAAAG-CAGTGACCTTTTGTTTATGCGTGAGCTTTT-TTGTTTTCGGGTGTTGACTAT-GAC----AT
gi|14 : T-CT-ATAATTTCTCATTACA-TCAAT-AT-A--AAAACG-TCCGTGTACA-ATCCT--GTAATCTGA-C-A-TGTGTTTTCATTACGA-T-ATAT-TATAC--CT
gi|15 : ACTTTTTCAGGCAT-ACCTTCAATTTAA---AAGG-TATA-CCAAAAGT-CT-ATAATT
gi|16 : tagggacataaatT-T--ACCACT-AAGGTCAC-CG-AAACTGGTCACTTGACGATA-ATAT
gi|2 : TATCGTCGACTGCCCTATTTCAGTGACTGACCTATATTCGGTGCTCTTTAGTTTACGTGTGTTCTAGG-CTGTTT-CGGG-GTTGACTAC-ATC----ATCTC--TTTTA-CC-TAG---TGGCTTGTG-AACATA-CTGGGAGTTCGT-ATTCATAT--TTTTTTTT-----CCGA-TAGTATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATGAACAGC------ACAACC--CCCAAATTGA-GCCCATTTGCGCGCA------TCACTTTTT-AGGCATTACTTTGAATTCAATATAAAG-T-TA-CCAAAAGTGCT-GTAATGT-TCATT-CA-TCAGTCAT----AAAACG-TTCCTATATATAACAT--GT------A-T-GGTCTGCTCTTATTATTG-TCACATTGATAC--CTGTG-TAC-T-CACCTGTAATTTAA-----GGT-CACCGAAATAGGCTGACG-TCA-ACATT-TCC-G------------AGCTTCA-------AT-TGA-----------CAT-----TGTTTT-CATTAC---GACGATATATTC-AA-TAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAATAAAGGAA-A--TTAGGTTGC--TTATTAGTAGG-TACATTA-T--TTAATATTAATTT---TCAC--TCCA-GTAAA-TTA-TGAGGAATATCAG-TTGTTTT-T--ACAACTAAAGGTCCC-AG-AACCTGGTCA-TCGAtc
gi|3 : taTATCGTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTAGTTTACGTGTGTTCTAGG-CTGTTTTCAGGTGTTGACTAC-GTC----ATCTC--TTTTA-CCATAG---TG-CTTGTA-AACATA-CTGGGAGTTCGT-ATTCA-AT--TTTTTCC------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTGCAAGCTATCAACACC------AGCACC--C-GAAATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATATAAAG-TATA-CGAAAAGT-TT-GTAATGTCTCGTAACA-TCAGT-AT-G--AAAACG-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTATTATTG-TCACAT-GATAC--CTGTG-AACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGAT-GGAATAAAGGAA-T--TTA-GTTGCTTTTATAAGTAGG-CACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GT-AT-TAA-TGAGGAA-ATC-A-CTG--TT-T--ACCACT-AAGGTCAC-CGAAAACTGGTCACTCGACGATACATAT
gi|4 : GTCGACTGCCCTATTTCAGTGACTGACCTAAAT-CGGTGACCTTTTGTTTACGTGTGTGCTAGG-CTGTTTTCGGGTGTTGACTAC--TCCT--ATTAC--TTTTATCCGTAG---TG-C-TGT--AACATA-CTGGGAGTTCGT-ATTCA-AT--ATTTTTT------CCGA-TA--ATGAA--G-CACAAAGCGGTTAGTTTG-AAGCTATCAACACC------AGCACC--CCG-AATTGA-GCCCATTTACTT--A------TCACTTTTTTAGGCAT-ACCTTGAATTCAATAT-AAG-TAT--CCAAAGTT-CT-G-AATGTCTCATT-CACTCAGT-ATAG--AAAACG-TCTGAGTACA-ATCA---GT------A-C-G-TCTGCTC-TATTATTATTCACATGGATAC--CTGTG--ACGT-CACCTGGA-TTTAA---AAGGTACACCGAAA-GGG-TGACG-TC--ACATT-TCC-G------------AA-TTCA-------ATCTGA-----------CAT----GTGTTTT-CATTAC---GAC-ATATATTC--AATAAT--GGATTAAT-------AGATTGGCAG---TTTTTGGATGGGAATAAATGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA---T---TCAT--CCAA-GTAA--TAA-TGAGGAA-ATC-A-CTG--TTCT--ACCACT-AAGGTCAC-TG-AAACTGGTCACTCGACGATAC
gi|5 : GACTGTCCTATTTCGGTGACTGACCTAAAT-CGATGACCTGTTGTTTTCGCTTGCGCTTTG-TTGTTTCCGGGTGTTGACTAC-GTC----ATCGC--TTTTG-CCGTAG---TG-CTTGTA-AATATA-CTGGGAGTTCGT-CTTCA-A-------------------------ATGAA--G-TACGAGAAGGTAAATTTGCAGACTAAAAACACC------ACCACC--CCGAAATTAA-GCCC----ACTT--G---------CTT--------ATGACTTT---TTCAG------G-CATA-CC--------T-TTAATTTGATATAA-----AGT-AT-ACCAAAA-G-TC----TATA-ATTTT--TC------A-CTA-TATCATCTTGTCATTG-T---------------GTG-AACGT-CACCTGTA-TTTAATTTAAGGT-CACCGAAATAGG-TGACG-TCA-ATATT-TTTAG------------TA-TGCA-------ATCTGA-----------CAG----GTGTTTT-AATTAC---GACGATATATTC-AAATACT--GGATTAAT-------AGATTGGTAT---TTTTTGGATGGGAACAAAGGAA-T--GTA-GTTGC-TTTATAGATAGA-T-C-TTA-TAATT-A--TTA---T---TAAT--CCAATGTAAT-TGA-TG-CGAA-ATC-G-CT
gi|6 : CATCGACTGCCCTATTTCGGTGACTGACCGAAAT-CGGTGATCTTTTGTTTACTTGTGTGCTTTG-TTGTTTCTGGG----GACTAT-GTC----ATCCC--TTTTG-CCGTAG---TG-CTTGTG-AACATA-CTGGGAGTTCGT-ATTCA-TT--TCTATTT------TCAA-AA--ATGAA--G-CACAAGAAGGTAAGTTTGCAAACTATCAACTCC------AGCACC--CCGAAATTAA-GCCCATTTATTT--ATCACATTCACTTTTTCAGGCAT-ACCTTCAGTTTAATATTAAT-TATA-CCAATAGT-CT-ATAAATTCTCATTCCA-TCAAT-AT-G--AACACG-TCAGTATACA-ATCCT--GT------A-C-G-TTTGCTATTATTAATG-TCACAT-GAAACATGTGTG-AATGT-CACTTGTA-TTTAA---AAGGT-CACCGAATTAGGATGATGTTCA-ACATT-Tactgtcactcgacgtacatttatcaattcaaa
gi|7 : G-TCCGTATACA-ATCAT--GT------A-C-A-TCTGCTCTTCTTATTG-TCACAT-GATAC--CTGTG-TACGT-CACCTGTA-TTTAA---AAGGT-CACCGAAATAGG-TGACG-TCA-ACATT-TCC-G------------AG-TTC--------ATCTGA-----------CATGTACGTGTTTT-CATTAC---GACGATATATTC-AAATAAT--GGATTAAT-------AAATTGGCAG---TTTTTGGATGGGAATAAAGGAA-T--TTA-GTTGC-TTTATTAGTAG
gi|8 : ----GTATTTT-GATTAC---GATGATATATTC-AAATAAT--GGATTAAC-------AGATTGACAT---TTTTTGGATGGGAACAAAGGAA-T--TTA-GTTGC-TTTATAAGTAGG-TACATTA-T--TT-AT-TTA--TT---TCAT--CCAA-GTAAT-TGA-TGGGGAA-ATC-G-CTG--TT-T--ACCACT-AAGGTCAC-CA-AAACTGGTCACTCGACGACA
gi|9 : TCCC--TTTTG-CCGTAG---TG-CTTGGA-AACATA-CTGGGAGTTCGT-ATT-A-AT--TTTTTTT------CCGA-TA--ATGAA--C-CACAAGAAGGTTAGTTTGCAAGCTATCAACACC------AACACC--CCGAAATTGA-GCCCATTTATTT--A------TCACTTTTTt