lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 111 11111 1111 333333 11 1 3 2222 1 222222 3333333 2222 11 1 4444 1 111 888888888888 11111 222222 11 11 111 22 1 11 1 22222 111 1 222222222 6666666666666666666 111 1 111 1 1 11 111 1111111111 111 55555555555555555555555555555555555555555555555555555555 111111 444444444444 111 111 11 11111 1 222222222 1111 3333333333333333333333 222222222 222222222222222 2222 33333333333 1 1111 33 1111111 1111 4444444444444444444444444444444 1 22 111 33333333 11 33 333 111 11111 11 2 111 222222222222222222222222 111 2 22222 11111111 11111 222222 222222 11111 22 222222 1111 22 2 777777777777777 3 2 1
lowQualScore : 9 77777 5 77 222 1 99999 7777 111111 88 6 0 0 1111 0 111111 9 2222222 2 1111 00 0 8888 0 3 111 111111111111 88888 0 3 666666 33 33 111 33 2 0 99 0 88888 777 0 3 3 777777777 1111111111111111111 111 0 777 6 0 33 3 00 999 8 5555555555 88 111 8 55555555555555555555555555555555555555555555555555555555 99 6 555555 0 000000000000 444 333 3 0 11 8 8 55555 3 6 222222222 4444 9999999999999999999999 99 666666666 6 6 333333333333333 6 6 99 6 1 6666 6 6 6 11111111111 1 99 4 99 1111 11 77 5 5 5 5 4444444 4444 66 4444444444444444444444444444444 7 00 6 111 00000000 6 6 99 6 77 66 33 5 00 5 000 7 000 77 00000 5 77 5 5 5 5 0 1 99 0 6 111 5 666666666666666666666666 6 99 6 2 111 6 6 3 1 00000 0 44444444 6 99 66666 6 888888 6 333333 6 11111 33 6 1 99 6 6 222222 0000 66 0 5 5 44 2 99 9 555555555555555 66 5 3 5 99 4 888 0 5 0 4 5 2
lowQualScore : . ..... . .. ... . ..... .... ...... .. . . . .... . ...... . ....... . .... .. . .... . . ... ............ ..... . . ...... .. .. ... .. . . .. . ..... ... . . . ......... ................... ... . ... . . .. . .. ... . .......... .. ... . ........................................................ .. . ...... . ............ ... ... . . .. . . ..... . . ......... .... ...................... .. ......... . . ............... . . .. . . .... . . . ........... . .. . .. .... .. .. . . . . ....... .... .. ............................... . .. . ... ........ . . .. . .. .. .. . .. . ... . ... .. ..... . .. . . . . . . .. . . ... . ........................ . .. . . ... . . . . ..... . ........ . .. ..... . ...... . ...... . ..... .. . . .. . . ...... .... .. . . . .. . .. . ............... .. . . . .. . ... . . . . . .
lowQualScore : 6 44444 7 99 333 0 66666 0000 555555 55 5 0 0 2222 0 555555 8 0000000 2 2222 22 0 8888 0 2 555 000000000000 55555 2 5 000000 88 00 000 88 5 0 22 0 55555 555 0 2 2 000000000 0000000000000000000 000 0 555 8 0 88 2 55 888 0 4444444444 88 888 0 33333333333333333333333333333333333333333333333333333333 22 7 000000 8 000000000000 000 444 2 8 22 0 0 00000 3 7 888888888 2222 7777777777777777777777 22 777777777 7 7 000000000000000 7 7 22 7 0 8888 7 7 7 55555555555 3 22 8 77 0000 22 99 0 0 0 0 6666666 5555 99 6666666666666666666666666666666 1 77 7 777 33333333 7 7 22 7 99 44 66 7 77 7 333 1 000 00 44444 7 99 7 7 7 7 9 4 33 0 7 777 2 555555555555555555555555 7 22 0 5 777 7 7 7 7 88888 7 33333333 7 22 77777 7 888888 7 555555 7 88888 77 7 7 22 7 7 555555 6666 99 4 0 0 22 5 99 5 999999999999999 99 0 9 0 22 6 888 4 0 0 1 0 2
consensus : GGTGTTTCAATAA---A-CA-TG--TCCCA--AATT---TACG----GTTTC-----AAAAAAA-CANTTA-TGCTTCAT----GTATA-AA--NT--GAAATTTT------TGCAA----AAATGTTTA-GA-C--CA-ATTTCATACAATT-TTAT---C------TCAAA--A--AAAGTTNGAA-T----AAA--GCTGAATTAAT-T-CATATG-TCAGACAGGCATTT-GGGGAAAAAAAG-TCA-AA--TTTTGAG---ACTGTACTC-AATTTAACGTCATTT---TA--GGTCAGATAAC----GTCGCG---ACGGC-TA-A-CTG-TTGTGGTT---TCACCATCCCCTTCA-TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-TG----CCC----CAT----AC----TG-T-------A-------------G-----AA--GTGGTC-TTTCT----TCATAAAAGTC--G----GG---TT---TTGAAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATG-------------TGCTCC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT--T-GCAA-A-AC-TT---AAACGGGAAA--GAAATGTCGGTATCTTTTAGATAN-TG-CATAAC--GGAAA-TCTT-A-TA-TGG-NAT---GAATT-T-TCAA--AATT--------CT---A-TA-CAC------A---GAACT-TATA-TGGA-AT-C-CAGT--T--T--C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTTA-G-ATAATTG---TTTTCA---C-ATTT---T-CA-AT--A-TT-TT-CA-TCCAATTTCACTG--CCCTC-TGTCTTA---TAGGCGTAT--C----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTGNTC---AAATTTA-GC-AACGA-TTCGGAAAATC---TGTTTCC--TA-A-AA-G--ATGC-----TTCAC-ATCTGGG-----TACTTCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATAGAGAGATNCTTTTTATGA-TCCATTTTC-AA----TACT--AATACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CATC-AA---AAATATTTA-TGA-CGTCATAGT-ATATTGT
Reference ( gi|3 ) : GGTGTTTCATTAA---AACA-TG--TCCCA--AACT---TGCG----GTTTC-----AAAAAAAACACTTA-TG-TTCAT----GTATA-AA--AT--GAAATTTT------TGTAA----AAATGTTTA-GATT--CA-ATTTCATACAAAT-TTAT---C-----CCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTCAGACAGGCATTT-GGGGAAAAAAAG-TCA-A---TTTTGAG---ACTGTACTC-AATTTAACGTCATTT---TA--G-TCAGATAAC----GTTACG---AC----TA-A-CTG-TTGTGGTT---TCACTATCCTCTTCA-TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-TA----CCC----CAT----AC----TG-T-------A-------------G-----AA--GTGGTC-TTTCT----TAATAAAAGTC--A----G----TT---TTGAAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATG-------------TGTTCC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T--T-GCAA-A-AC-TT---AAATGGGAAA--GAAATGCCGGTATCTTTTAGATAA-TGCCATAAC--GGAAA-TCTT-A-TA-TGG-AAC---GAATT-T-CCAA--AATT--------CT---A-TA-CAC------A---GAACT-TATA-TGGA-AT-C-CAGT--T--T--C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--G-ATAATTG--TTTTTCA---C-ATTT---T-CA-AT--A-TT-TT-CA-TCTAATTTCACTG--CC-TC-TGTCTTA---TAGGCGTAT--C----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTGGTC---AAATTTA-GC-AACGATTTCGGAAAAGC---TGTTCCT--TA-A-AA-G--ATGC-----TTCAC-ATCTGGG-----AATTTCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGATCCTTTTTATGACTCCATTTTC-AA----TACTTGAGTACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CATCAAA---AAATATTTA-TGA-CATCATAGT-ATATTGT
gi|11 : GGTGTTTCATTAA---A-CA-TG--TCCCA--ACTT---TACG----GTTT------AAAAAAACCAGTTA-TGCTTCAT----GTATA-AA--AT--GAAA-TTT------TGCAA----AAATGTTTA-GA-T--CA-ATTTCATACAATT-TTAT------------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATAT-GTCAGA
gi|9 : agGGTGTTTCAATAA---A-CA-TG--TCCC---AACT---T-CG----Gnnnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|15 : ctcatagtagtttttcaatatcaatatagagatactttttatgatccattttcaaacacctgaatacctgaccttttgatgatgccatcaaaaatatttaagacgtcatagtattttgtgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatGGTGTTTCAATAA---A-TA-TG--TCCCA--Actg
gi|16 : agGGTGTTTCAATAA---A-CA-TG--TCCCctgt
gi|2 : GTGTTTCAATAA---A-CA-TG--TCCCA--ATTT---TACG----GATTC-----ATAAAAA-CAGTTA-TGCTTCAT----GTATA-AA--CT--GAAATTTT-------GCAA----AA-TGTTTA-GAT---CA-ATTTCATACAATT-TTAT---C--------AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TCAGACAGGCATTT-GG--AAAAAAAG-TCA-A---TTTTGAG---ACTCTACTC-AATTTAACGTCATTG---TA--GGTCAGATAAC----GTCGCG---ACG---TA-A-CTG-TTGTGATT---TCACCATCCCCTTCA-TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-TG----CCC-----AT----AG----CG-T-------AACTTTGGCTAT--G-----AACAGTGGTC-TT-CT----CA-TAAAA-----A----G----TTGGGTTGAAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTG-------------TGCTTC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT--T-GCAA-A-A--TT---AAA--GGAAA--GAAATGTCGGCATC-TTTAGATAC-TG-CACAAC--GGAAATTTTT-A-TA-TGG-AAT---GAATT----CAA--AATT--------CTA--A-TT-CACAGATGAA---GAACTATAT--TGGA-AT---CAGT--TA-T--C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTTA-G-ATAATTG----TTTCA---C-CTTT---T-CA-AT--A-TTATT-CA-TCCA--TTCA-TGC-CC-TA-TGTCTTA---TA-GCGTAT--CTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTGTTC---AAATTTA-GC-AACGA-TTCGGAAAATA---AGTTCCT--AG-A-AACG--ATGC-----TTCACAATCTGGG-----TACTTCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATATAGAGATAAATTTTTAGTGATCACATTTTC-AA----------ATTACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTCAT---AAATATTGA-TGAGCA-CA-AGT-ATATTGTctgtatga
gi|1 : TTTCAATAA-----CA-TG--TCCCAGGAATT---TTCGACTTGTTTC-----AAAAAA--CATTTA-TA-TGCATTACTGTATATAA--CT--GGAAATTT------TGCAATATCAAGTGTTTAAGAACAACAGATTTCATACAATT-TTTTTAAC-----ATTAAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TCAGACAGGCATTT-GGGAAAATAAAGCTCA-AA--TTTTGAG---ACTGTACTC-A-TTTAACGTCATGT---TA--GGTCAGATAACTCTTGT--CG---ACCGT-TA-ATCTG-TTATGGTT---TCACCAGTCCCTTCA-TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-TG----CCCATATCATTTTTAC----TT-TCT-----G-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAAGTTCGG----G----TT---TTGAAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATA-------------TAT----------GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAA-T--TTGCAA-ACAC--------AT------------TGTCGGTAT--TTTAGATGT-TGCGATAAC--GGACA-TTTT-ACTA-TGA-AAT---GATTT-TGTTAA--AATTGCATTAAGCTAAGA-TA-GAA------T---GAACTGTAT--TGGACATCC-CATT--C--T--C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGG-ATAATTG----TTTCAGCTC-CTTTCTCT-CA-AT--AGTT-TTGCATTCGGATTTTACTAGCCC-TCGTGTCTTA---TAAGCGTAT--C----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACT-GTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA-GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATATAGCGA------TTCTGT---CCTATTTTT-AGATGTTATTCAAATACC-GAATACAACT-GACC-TTTTGATAGGTGTGCAGTAAATACAAATATTGAGTAATCGTCATAGTCATATAGTgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|5 : TTCATCAATTAAACAGTGAATCC----AACTATATACG----ATTTTCGAAAAAAAAAAACACTTAATGCTTCAT----GTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA----CA-ATT-CAAACAAATATTAT---TAGTCACTCAAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATGTCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGG-TCATATAACA---GTTACGTATACAACGTAGA-CTGTTTGTGGTTCACTCAC--TCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA----CAT----CCAGCTTGAT-------A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAAGTC--AGCGTG----TT---TGGCAAATTCCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATGA-C------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGT--CGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAA-TTCT-GCCA-A-CC-AT---GA--GGGAAAATGGGATGATCGTA----TTAGATAACTG-CATAATCGGGAAA-TCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CT---ATTACCAC------AAGCAAGCTGTATA-TTG--AT-CACAGA--T--CAACGTAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT--G-CTTATTGAAGTTGCCA---CTACTT---A-GAGATTCA-TT-AC-CA--CTAA-TTCACTG--Ctgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|4 : agggctgTCAGACAGGCATTT-GAA-AAAAAAAG-TCA-A---TTTTGAG---ACTGTACTC-AATT-AACGTCATTTAGGTG--G-TAAGATAAC----GTTGCG---ACG---TA-A-CTG-TTGTGGTT---TCACGATCCTCTTCA-TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-TG----CCC-----AT----AC----TG-CTATACTGA-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA--GTC--A----GG---TT---TTGAAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATG-------------TGCTCC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT--T-GCAA-A-AC-GT---AAATGGG-AA--GAAATGCCGGTATCTTTTATA-AA-TG-CATAAC--CGAAA-TCTT-A-TA-TGG-TAT---GAATT-T-TCAA--AATT--------CT---A-TA-CAC------A---GAACG-TATATTGGA-AT-C-CAGTTCT--C--C-TAAATACA-T--TCCTTA-CATA-T--T-CGTTGGC--GTCT-CTTG-G-ATAATTG---TTTTCA---C-ATTT---T-TA-AT--A-TT-TT-CA-TCTAATTTCACTGC-CC-TC-TGTCTTAGCTTATTTGTGTTAT----T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTGGTC---AAATTTA-GC-AACGA-TTCGGAAAATC---TGTTTCC--TA-A-AA-G--ATGC-----TTCAC-ATCTGGG------ATTTTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGATTCTTTTTATGA-TCCATTTTCAAA----TACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CATC-AA---ACATATTTA-TGT-CGTCATAGT-ATATTGT
gi|13 : atagaattttgaaaattcataccatataagatttcgt--GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-TG-----TC----CAT----AC----TG-T-------GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATgtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : -------------G-----AA--GTGGTCCTTTAT----TCATGAAAGTC--G----GGTTTTT---TTTAAGTT-CCCCAGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATG-------------TCCTCC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT--T-GCAA-A-ACATTTAAAAACGGG-AA--GAAATGTCGGTATCTTTTAGATAT-TG-TATAAC--GGAAA-TTTT-A-TA-TGG-AAT---GAATT-T--CAA--AATT--------CT---A-TA-CACGGATGAA---GAACT-TATATTGGA-AT-C-CAGT--TC-T--C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTTG-G-ATAATTG---TTTTCA---C-CTTT---T-CA-AT--A-TT-TT-CA-TCCTATTTCACTG--CCTTC-TCTCTTA---TAGGCGTAT--C----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTGTTC---AAATTTA-GC-AACGA-TTCGGAAAATC---TGTTTCA--TAGA-AA-G--ATGC-----TTTAA-ATCTGGG-----TACTTCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATAT--AAAGATCCTTTTTATGA-TCCATTTCC-A-----------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CATC--A---AAATATTTA-TGA-CGTCATAGT-ACATTGTtattatcata
gi|12 : aactttctggctat-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAG-------------TGCTCC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCAT-TG-T-GCAATA-AC-TT---AAAC-GGAAA--GAAATGTTGGTATCTTTGAG---A-TGT--------------TTTT-A-TA-TGG-TGT---GAATT-T-C--A--AATC--------GT---A-T--TTC------A---AAATT-TAgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|4 : AAC--G-AAA-TCTT-A-TA-TGG-TAT---GAATT-T-TCAA--AATT--------CT---A-Tgttg
gi|7 : GAAA-TCTT-A-TA-TGG-TAT---GAATT-T-TCAA--AATT--------CT---A-TA-CAC------A---GAACG-TATA-TTGA-AT-C-CAGT--TCTT--C-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT--GGATAATTG--TTTT-CA---C-ATTT---TTCA-AT--A-TT-TT-CA-TCTAATTTCACTG--CCCTC-TGTCTTA---TAGGCGTAT--T----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTGGTC---AAATTTAAGC-AACGATT-CGGAAAATC---TGTTTCC--TA-A-AA-G--ATGC-----TTCAC-ATCTGGG-----AATTTCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGATTCTTTTTATGA-TCCATTTTCAAA----TACTGTAGTACCTGAATA---CT-GAACTTTTTGAT-GATGC-CATC-AA---ACATATTTA-TGT-CGTCATAGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|8 : ac--T-CGTCGGT--GTCT-CATA-G-ATAATTG--TCGA-CA---C-ATTT---T-CA-AT--A-TT-TT-CA-TCCAATTGCCCTG--CCCTC-TGTCTTA---TAGGCGTAT--C----T---TTTC-T----T--GTCATCAA-TAG--TCCCGTACTGTTC---AAATTTT-AT-GACAATTCCG-AAGACC---TGTTTGC--TAGA-AA-G--ATGC-----TTCAC-ATCTGAG-----TACTTCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGATCCTTTTTATCA-TCTAATTTC-A-----------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CATCAAA---AATTAATTA-TAA-TGCCATAGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|9 : CTCATAG------TAG----TTT--TTCA-AT-ATCAATATAGAGATA--CTTTTTATGA-TCCATTTTC-AA-----AC------ACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CATC-AA---AAATATTTA-AGA-CGTCATAGT-ATTTTGTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|10 : CTCATAG------TAG----TTT--T-CA-AT-ATCAA-ATA-AGAGATACTTTTTATGAATCCATTTTC-AA-----AC------ACCTGAATAC--CT-GACC--TTTGAT-GATG--CATC-AA---AAATA-TTA-AGA-CGTCATAGT-AT-TTGTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGTATGCAATACTTCAGGTGGAAAGAATATGCAGACATCTGAAGTTGGGAACATTTTATTGAAACACCCTGTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 4444444444444444 11111 111111 11 11 2222 111 111 2222 111 4444 111 11 111 111 1111 0000000000000000000000000000000000000000000000 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 2222222222 111111 1 11 33333 11 11 11 111 111 111 22222222 1111 111 111 11111 1111 111111 111 11111111111 22 1111111 666666666
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 22 7777 0 1 8 9999999999999999 33333 1 999999 11 66 8 8 6 6 8 11 8 2222 8 444 8 0 0 444 0 8 5555 444 2222 8 8 8 0 8 5 444 11 0 444 6 99 6 111 6 99 6 4444 9999999999999999999999999999999999999999999999 77 5 0 2222 6 6 6 6 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 1 999 5 0 1 5 1 777 66 8 4 4 1 9999 1 555 66 00000000 888 5 1111111111 666666 7 00 5 5 5 66666 5 5 77 5 9999 11 5 00 00 000 1 000 5 5 5 5 5 5 5 000 3 66666666 666 2222 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 77 1 4444444 8 4 4 8 111111111 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . . . ................ ..... . ...... .. .. . . . . . .. . .... . ... . . . ... . . .... ... .... . . . . . . ... .. . ... . .. . ... . .. . .... .............................................. .. . . .... . . . . ... . . .. . . .. .. . . . ...... .... ........... . ... .. ......... . . .. . . ..... . . .. . . . . .. ........ . ... . . . . . ... .. . . . . .... . ... .. ........ ... . .......... ...... . .. . . . ..... . . .. . .... .. . .. .. ... . ... . . . . . . . ... . ........ ... .... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. . ....... . . . . ......... .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 66 0000 8 4 0 8888888888888888 00000 0 000000 00 88 0 0 7 7 0 44 0 4444 0 000 0 8 8 000 8 0 0000 000 6666 0 0 0 8 0 6 000 00 8 222 7 22 7 777 7 22 7 2222 3333333333333333333333333333333333333333333333 99 7 7 1111 7 7 7 7 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 333 7 7 4 7 0 333 99 9 4 4 0 4444 9 333 11 66666666 888 7 1111111111 444444 1 77 7 7 7 00000 7 7 99 7 0000 99 0 11 77 000 3 000 7 7 7 7 7 7 7 000 0 77777777 000 1111 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 0 4444444 9 4 4 9 777777777 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCGCG---ACG---TA-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC-T--C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTTG-GATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGATNC-------TTTTTATGA-TC-CATT-TTC-AA--------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAC-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTNGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCGCG---ACGGC-TA-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT--T--C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTTA-GATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATAGAGAGATNC-------TTTTTATGA-TC-CATT-TTC-AATAC--T--AATACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAATT-TTTTTAAC------ATT-AAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA--AATTTT-GAG---ACTGTACTC-A-TTTAACGTCATGT---TAGG-TCAGATAACTCTTGTCG-----ACCGT-TA-ATCTGTT-ATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCCATAT---CATTTTTAC----TT-TCTG-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAA-GTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACATTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCTAAGATA-GAA------T---GA------ACTGTAT--T-GGACATC-CCATTC-T--C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGATTCTGTCCTATTTTTA-GA-T---GTTATTC-A---------AATACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGATAC-------TTTTTATGAATC-CATT-TTC-AA---------ACACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT----------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT-----------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TC-------CAT----AC----TG-T--GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATtcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------C---AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA--A-TTTT-GAG---ACTCTACTC-AATTTAACGTCATTG---TAGG-TCAGATAAC----GTCGCG---ACG---TA-A-CTGTT-GTGATTTCAC-CATCCCCTTCA---TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----GCCC--------AT----AG----CG-T--AACTTTGGCTAT--G-----AACAGTGGTC-TTC------TCATAAAAAGT-TGG-GT-T--G---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATCTTT-AGAT-ACTG-C-ACAAC--GGAAATTTTTA-TA-TGGAA----TGAATT----CAA--AATT--------CTAA--TT-CAC------A---GATGAAGAACTATAT--T-GGA-ATC--AGTTA-T--C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTTA-GATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATATAGAGATAAAT-------TTTTAGTGA-TCACATT-TTC-AA--------ATTACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAAAT-TT----AT------CCCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAG--TCAGATAAC----GTTACG---AC----TA-A-CTGTT-GTGGTTTCAC-TATCCTCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TAATAAAA-GT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAATCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT--T--C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGATCC-------TTTTTATGACTC-CATT-TTC-AATAC--TTGAGTACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATT-AACGTCATTTAGGT-GG-TAAGATAAC----GTTGCG---ACG---TA-A-CTGTT-GTGGTTTCAC-GATCCTCTTCA---TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----GCCCATACTGCTAT----AC----TG----A-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA---GT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGGAA---GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-TTGGA-ATC-CAGTT--CTCC-TAAATACA-T--TCCTTA-CATATT----CGTTGGC--GTCT-CTTG-GATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTAT--T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGATTC-------TTTTTATGA-TC-CATT-TTCAAATACTGT--AGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GAC--AA----TT-CAAACAAATATT----ATTAGTCACTC-AAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGGTCATATAACA---GTTACGTATACAACGTAGA-CTGTTTGTGGTT-CACTCA-CTCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA-------CAT----CCAGCTTGAT--A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAA-GT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAATCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CTAT--TACCAC------AAGCAA------GCTGTATA-T-TG--ATCACAGAT--CAACGTAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-Cgtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc-------------G-----AA--GTGGTCCTTTAT----TCATGAAA-GT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAATTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CTA---TA-CACGGATGAA---GA------ACT-TATATT-GGA-ATC-CAGTTC-T--C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTTG-GATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATAT--AAAGATCC-------TTTTTATGA-TC-CATT-TCC-A---------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTatgcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctatGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-T-TGA-ATC-CAGTTCTT--C-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTTG-GATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGATTC-------TTTTTATGA-TC-CATT-TTCAAATACTGT--AGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CATA-GATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATCT---T---TT-C-T----T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGATCC-------TTTTTATCA-TC-TAAT-TTC-A---------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATAGAGA--TAC-------TTTTTATGA-TC-CATT-TTC-AA---------ACACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 4444444444444444 11111 111111 11 11 2222 111 111 2222 222222 111 11 111 111 1111 0000000000000000000000000000000000000000000000 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 2222222222 111111 1 11 11 11 111 111 111 22222222 1111 111 111 11111 1111 111111 111 11111111111 22 1111111 444444444
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 44 7777 0 1 8 9999999999999999 33333 1 999999 11 66 8 8 6 6 8 11 8 2222 8 444 8 0 0 444 0 8 5555 8 333333 8 8 8 8 0 8 5 444 11 0 444 6 99 6 111 6 99 6 4444 9999999999999999999999999999999999999999999999 77 5 0 2222 6 6 6 6 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 1 999 5 0 1 5 1 777 66 8 4 4 1 9999 1 555 66 00000000 888 5 1111111111 666666 7 00 5 5 5 888 5 5 5 77 5 9999 11 5 55 00 000 1 000 5 5 5 5 5 5 5 000 3 66666666 666 2222 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 22 55 4444444 4 8 4 4 7 222222222 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . . . ................ ..... . ...... .. .. . . . . . .. . .... . ... . . . ... . . .... . ...... . . . . . . . ... .. . ... . .. . ... . .. . .... .............................................. .. . . .... . . . . ... . . .. . . .. .. . . . ...... .... ........... . ... .. ......... . . .. . . ..... . . .. . . . . .. ........ . ... . . . . . ... .. . . . . .... . ... .. ........ ... . .......... ...... . .. . . . ... . . . .. . .... .. . .. .. ... . ... . . . . . . . ... . ........ ... .... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. .. ....... . . . . . ......... .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 00 0000 8 4 0 8888888888888888 00000 0 000000 00 88 0 0 7 7 0 44 0 4444 0 000 0 8 8 000 8 0 0000 0 000000 0 0 0 0 8 0 6 000 00 8 222 7 22 7 777 7 22 7 2222 3333333333333333333333333333333333333333333333 99 7 7 1111 7 7 7 7 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 333 7 7 4 7 0 333 99 9 4 4 0 4444 9 333 11 66666666 888 7 1111111111 444444 1 77 7 7 7 666 7 7 7 99 7 0000 99 0 22 77 000 3 000 7 7 7 7 7 7 7 000 0 77777777 000 1111 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 44 4444444 4 9 4 4 3 444444444 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCAA-------AGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCAA-------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAATT-TTTTTAAC------ATT-AAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA--AATTTT-GAG---ACTGTACTC-A-TTTAACGTCATGT---TAGG-TCAGATAACTCTTGTCGAC--------CGTTA-ATCTGTT-ATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCCATAT---CATTTTTAC----TT-TCTG-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAA-GTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACATTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCTAAGATA-GAA------T---GA------ACTGTAT--T-GGACATC-CCATTC--T-C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGAT-TCTGTCCTATTTTTA--GA-T---GTTATTC-A-------AATACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGAT-AC-------TTTTTA-TGAATC-CATT-TTCAA-------A-CACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT----------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT-----------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TC-------CAT----AC----TG-T--GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATtcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------C---AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA--A-TTTT-GAG---ACTCTACTC-AATTTAACGTCATTG---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGATTTCAC-CATCCCCTTCA---TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----GCCC--------AT----AG----CG-T--AACTTTGGCTAT--G-----AACAGTGGTC-TTC------TCATAAAAAGT-TGG-GT-T--G---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATCTTT-AGAT-ACTG-C-ACAAC--GGAAATTTTTA-TA-TGGAA----TGAATT----CAA--AATT--------CTAA--TT-CAC------A---GATGAAGAACTATAT--T-GGA-ATC--AGTTA--T-C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTT-AGATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATAT--AGAGATAAA-------TTTTTAGTGA-TCACATT-TTCAA-------ATTACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAAAT-TT----AT------CCCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAG--TCAGATAAC----GTTA-CG------AC-T-A-A-CTGTT-GTGGTTTCAC-TATCCTCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TAATAAAA-GT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAATCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT---T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGAT-CC-------TTTTTA-TGACTC-CATT-TTCAATACTTG-AGTACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATT-AACGTCATTTAGGT-GG-TAAGATAAC----GTTG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-GATCCTCTTCA---TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----GCCCATACTGCTAT----AC----TG----A-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA---GT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGGAA---GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-TTGGA-ATC-CAGTTC--T-CCTAAATACA-T--TCCTTA-CATATT----CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTAT--T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCAAATACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA--CAA----TT-CAAACAAATATT----ATTAGTCACTC-AAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGGTCATATAACA---GTTA-CGTATACAACGT-AGA-CTGTTTGTGGTT-CACTCA-CTCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA-------CAT----CCAGCTTGAT--A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAA-GT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAATCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CTAT--TACCAC------AAGCAA------GCTGTATA-T-TG--ATCACAGATCAAC-G-TAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT-Ggtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc-------------G-----AA--GTGGTCCTTTAT----TCATGAAA-GT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAATTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CTA---TA-CACGGATGAA---GA------ACT-TATATT-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTT-GGATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATATA-A-AGAT-CC-------TTTTTA-TGA-TC-CATT-TCC-A-------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctatGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-T-TGA-ATC-CAGTTC--TTC-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCAAATACTGTAGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CAT-AGATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATCT---T---TT-C-T----T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGAT-CC-------TTTTTA-TCA-TC-TAAT-TTC-A-------AATACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATA--GAGAT-AC-------TTTTTA-TGA-TC-CATT-TTCAA-------A-CACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 4444444444444444 11111 111111 11 11 2222 111 111 2222 222222 111 11 111 111 1111 0000000000000000000000000000000000000000000000 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 2222222222 111111 1 11 11 11 111 111 111 22222222 1111 111 111 11111 1111 111111 111 11111111111 22 1111111 555555555
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 44 7777 0 1 8 9999999999999999 33333 1 999999 11 66 8 8 6 6 8 11 8 2222 8 444 8 0 0 444 0 8 5555 8 333333 8 8 8 8 0 8 5 444 11 0 444 6 99 6 111 6 99 6 4444 9999999999999999999999999999999999999999999999 77 5 0 2222 6 6 6 6 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 1 999 5 0 1 5 1 777 66 8 4 4 1 9999 1 555 66 00000000 888 5 1111111111 666666 7 00 5 5 5 888 5 5 5 77 5 9999 11 5 55 00 000 1 000 5 5 5 5 5 5 5 000 3 66666666 666 2222 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 22 55 4444444 4 8 4 4 333333333 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . . . ................ ..... . ...... .. .. . . . . . .. . .... . ... . . . ... . . .... . ...... . . . . . . . ... .. . ... . .. . ... . .. . .... .............................................. .. . . .... . . . . ... . . .. . . .. .. . . . ...... .... ........... . ... .. ......... . . .. . . ..... . . .. . . . . .. ........ . ... . . . . . ... .. . . . . .... . ... .. ........ ... . .......... ...... . .. . . . ... . . . .. . .... .. . .. .. ... . ... . . . . . . . ... . ........ ... .... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. .. ....... . . . . ......... .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 00 0000 8 4 0 8888888888888888 00000 0 000000 00 88 0 0 7 7 0 44 0 4444 0 000 0 8 8 000 8 0 0000 0 000000 0 0 0 0 8 0 6 000 00 8 222 7 22 7 777 7 22 7 2222 3333333333333333333333333333333333333333333333 99 7 7 1111 7 7 7 7 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 333 7 7 4 7 0 333 99 9 4 4 0 4444 9 333 11 66666666 888 7 1111111111 444444 1 77 7 7 7 666 7 7 7 99 7 0000 99 0 22 77 000 3 000 7 7 7 7 7 7 7 000 0 77777777 000 1111 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 44 4444444 4 9 4 4 222222222 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCAA-------A-TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCAA-------AGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAATT-TTTTTAAC------ATT-AAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA--AATTTT-GAG---ACTGTACTC-A-TTTAACGTCATGT---TAGG-TCAGATAACTCTTGTCGAC--------CGTTA-ATCTGTT-ATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCCATAT---CATTTTTAC----TT-TCTG-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAA-GTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACATTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCTAAGATA-GAA------T---GA------ACTGTAT--T-GGACATC-CCATTC--T-C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGAT-TCTGTCCTATTTTTA--GA-T---GTTATTCAA-------A-TACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGAT-AC-------TTTTTA-TGAATC-CATT-TTCAA-------A-CACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT----------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT-----------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TC-------CAT----AC----TG-T--GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATtcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------C---AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA--A-TTTT-GAG---ACTCTACTC-AATTTAACGTCATTG---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGATTTCAC-CATCCCCTTCA---TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----GCCC--------AT----AG----CG-T--AACTTTGGCTAT--G-----AACAGTGGTC-TTC------TCATAAAAAGT-TGG-GT-T--G---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATCTTT-AGAT-ACTG-C-ACAAC--GGAAATTTTTA-TA-TGGAA----TGAATT----CAA--AATT--------CTAA--TT-CAC------A---GATGAAGAACTATAT--T-GGA-ATC--AGTTA--T-C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTT-AGATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATAT--AGAGATAAA-------TTTTTAGTGA-TCACATT-TTCAA-------ATTACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAAAT-TT----AT------CCCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAG--TCAGATAAC----GTTA-CG------AC-T-A-A-CTGTT-GTGGTTTCAC-TATCCTCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TAATAAAA-GT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAATCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT---T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGAT-CC-------TTTTTA-TGACTC-CATT-TTCAATACTTG-AGTACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATT-AACGTCATTTAGGT-GG-TAAGATAAC----GTTG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-GATCCTCTTCA---TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----GCCCATACTGCTAT----AC----TG----A-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA---GT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGGAA---GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-TTGGA-ATC-CAGTTC--T-CCTAAATACA-T--TCCTTA-CATATT----CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTAT--T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCAAATACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA--CAA----TT-CAAACAAATATT----ATTAGTCACTC-AAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGGTCATATAACA---GTTA-CGTATACAACGT-AGA-CTGTTTGTGGTT-CACTCA-CTCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA-------CAT----CCAGCTTGAT--A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAA-GT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAATCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CTAT--TACCAC------AAGCAA------GCTGTATA-T-TG--ATCACAGATCAAC-G-TAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT-Ggtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc-------------G-----AA--GTGGTCCTTTAT----TCATGAAA-GT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAATTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CTA---TA-CACGGATGAA---GA------ACT-TATATT-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTT-GGATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATATA-A-AGAT-CC-------TTTTTA-TGA-TC-CATT-TCCAA-------A-TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctatGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-T-TGA-ATC-CAGTTC--TTC-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCAAATACTGTAGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CAT-AGATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATCT---T---TT-C-T----T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGAT-CC-------TTTTTA-TCA-TC-TAAT-TTCAA-------A-TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATA--GAGAT-AC-------TTTTTA-TGA-TC-CATT-TTCAA-------A-CACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 4444444444444444 11111 111111 11 11 2222 111 111 2222 222222 111 11 111 111 1111 0000000000000000000000000000000000000000000000 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 2222222222 111111 1 11 11 11 111 111 111 22222222 1111 111 111 11111 1111 111111 111 11111111111 22 1111111 1111111 33333333
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 44 7777 0 1 8 9999999999999999 33333 1 999999 11 66 8 8 6 6 8 11 8 2222 8 444 8 0 0 444 0 8 5555 8 333333 8 8 8 8 0 8 5 444 11 0 444 6 99 6 111 6 99 6 4444 9999999999999999999999999999999999999999999999 77 5 0 2222 6 6 6 6 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 1 999 5 0 1 5 1 777 66 8 4 4 1 9999 1 555 66 00000000 888 5 1111111111 666666 7 00 5 5 5 888 5 5 5 77 5 9999 11 5 55 00 000 1 000 5 5 5 5 5 5 5 000 3 66666666 666 2222 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 22 55 4444444 4 8 4 4 4444444 66666666 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . . . ................ ..... . ...... .. .. . . . . . .. . .... . ... . . . ... . . .... . ...... . . . . . . . ... .. . ... . .. . ... . .. . .... .............................................. .. . . .... . . . . ... . . .. . . .. .. . . . ...... .... ........... . ... .. ......... . . .. . . ..... . . .. . . . . .. ........ . ... . . . . . ... .. . . . . .... . ... .. ........ ... . .......... ...... . .. . . . ... . . . .. . .... .. . .. .. ... . ... . . . . . . . ... . ........ ... .... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. .. ....... . . . . ....... ........ .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 00 0000 8 4 0 8888888888888888 00000 0 000000 00 88 0 0 7 7 0 44 0 4444 0 000 0 8 8 000 8 0 0000 0 000000 0 0 0 0 8 0 6 000 00 8 222 7 22 7 777 7 22 7 2222 3333333333333333333333333333333333333333333333 99 7 7 1111 7 7 7 7 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 333 7 7 4 7 0 333 99 9 4 4 0 4444 9 333 11 66666666 888 7 1111111111 444444 1 77 7 7 7 666 7 7 7 99 7 0000 99 0 22 77 000 3 000 7 7 7 7 7 7 7 000 0 77777777 000 1111 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 44 4444444 4 9 4 4 4444444 77777777 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAATT-TTTTTAAC------ATT-AAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA--AATTTT-GAG---ACTGTACTC-A-TTTAACGTCATGT---TAGG-TCAGATAACTCTTGTCGAC--------CGTTA-ATCTGTT-ATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCCATAT---CATTTTTAC----TT-TCTG-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAA-GTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACATTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCTAAGATA-GAA------T---GA------ACTGTAT--T-GGACATC-CCATTC--T-C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGAT-TCTGTCCTATTTTTA--GA-T---GTTATTCA-------AA--------TACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGAT-AC-------TTTTTA-TGAATC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT----------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT-----------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TC-------CAT----AC----TG-T--GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATtcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------C---AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA--A-TTTT-GAG---ACTCTACTC-AATTTAACGTCATTG---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGATTTCAC-CATCCCCTTCA---TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----GCCC--------AT----AG----CG-T--AACTTTGGCTAT--G-----AACAGTGGTC-TTC------TCATAAAAAGT-TGG-GT-T--G---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATCTTT-AGAT-ACTG-C-ACAAC--GGAAATTTTTA-TA-TGGAA----TGAATT----CAA--AATT--------CTAA--TT-CAC------A---GATGAAGAACTATAT--T-GGA-ATC--AGTTA--T-C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTT-AGATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATAT--AGAGATAAA-------TTTTTAGTGA-TCACATT-TTCA-------AAT-------TACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAAAT-TT----AT------CCCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAG--TCAGATAAC----GTTA-CG------AC-T-A-A-CTGTT-GTGGTTTCAC-TATCCTCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TAATAAAA-GT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAATCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT---T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGAT-CC-------TTTTTA-TGACTC-CATT-TTCAATACTTGAG--------TACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATT-AACGTCATTTAGGT-GG-TAAGATAAC----GTTG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-GATCCTCTTCA---TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----GCCCATACTGCTAT----AC----TG----A-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA---GT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGGAA---GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-TTGGA-ATC-CAGTTC--T-CCTAAATACA-T--TCCTTA-CATATT----CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTAT--T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA--CAA----TT-CAAACAAATATT----ATTAGTCACTC-AAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGGTCATATAACA---GTTA-CGTATACAACGT-AGA-CTGTTTGTGGTT-CACTCA-CTCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA-------CAT----CCAGCTTGAT--A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAA-GT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAATCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CTAT--TACCAC------AAGCAA------GCTGTATA-T-TG--ATCACAGATCAAC-G-TAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT-Ggtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc-------------G-----AA--GTGGTCCTTTAT----TCATGAAA-GT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAATTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CTA---TA-CACGGATGAA---GA------ACT-TATATT-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTT-GGATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATATA-A-AGAT-CC-------TTTTTA-TGA-TC-CATT-TCCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctatGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-T-TGA-ATC-CAGTTC--TTC-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CAT-AGATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATCT---T---TT-C-T----T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGAT-CC-------TTTTTA-TCA-TC-TAAT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATA--GAGAT-AC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 4444444444444444 11111 111111 11 11 2222 111 111 2222 222222 111 11 111 111 1111 0000000000000000000000000000000000000000000000 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 2222222222 111111 1 11 11 11 111 111 111 22222222 1111 111 111 11111 1111 111111 111 11111111111 22 1111111 1111111 33333333
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 44 7777 0 1 8 9999999999999999 33333 1 999999 11 66 8 8 6 6 8 11 8 2222 8 444 8 0 0 444 0 8 5555 8 333333 8 8 8 8 0 8 5 444 11 0 444 6 99 6 111 6 99 6 4444 9999999999999999999999999999999999999999999999 77 5 0 2222 6 6 6 6 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 1 999 5 0 1 5 1 777 66 8 4 4 1 9999 1 555 66 00000000 888 5 1111111111 666666 7 00 5 5 5 888 5 5 5 77 5 9999 11 5 55 00 000 1 000 5 5 5 5 5 5 5 000 3 66666666 666 2222 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 22 55 4444444 4 8 4 4 4444444 66666666 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . . . ................ ..... . ...... .. .. . . . . . .. . .... . ... . . . ... . . .... . ...... . . . . . . . ... .. . ... . .. . ... . .. . .... .............................................. .. . . .... . . . . ... . . .. . . .. .. . . . ...... .... ........... . ... .. ......... . . .. . . ..... . . .. . . . . .. ........ . ... . . . . . ... .. . . . . .... . ... .. ........ ... . .......... ...... . .. . . . ... . . . .. . .... .. . .. .. ... . ... . . . . . . . ... . ........ ... .... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. .. ....... . . . . ....... ........ .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 00 0000 8 4 0 8888888888888888 00000 0 000000 00 88 0 0 7 7 0 44 0 4444 0 000 0 8 8 000 8 0 0000 0 000000 0 0 0 0 8 0 6 000 00 8 222 7 22 7 777 7 22 7 2222 3333333333333333333333333333333333333333333333 99 7 7 1111 7 7 7 7 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 333 7 7 4 7 0 333 99 9 4 4 0 4444 9 333 11 66666666 888 7 1111111111 444444 1 77 7 7 7 666 7 7 7 99 7 0000 99 0 22 77 000 3 000 7 7 7 7 7 7 7 000 0 77777777 000 1111 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 44 4444444 4 9 4 4 4444444 77777777 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAATT-TTTTTAAC------ATT-AAA--A--GGAGTTTGAACT----ATATTGCTGAATTATT-T-TATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA--AATTTT-GAG---ACTGTACTC-A-TTTAACGTCATGT---TAGG-TCAGATAACTCTTGTCGAC--------CGTTA-ATCTGTT-ATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAAGGGTTGCTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCCATAT---CATTTTTAC----TT-TCTG-------------GTCTCTGA--GTGGTC-TTTCT----TCATAAAA-GTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACATTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCTAAGATA-GAA------T---GA------ACTGTAT--T-GGACATC-CCATTC--T-C-TAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC----TATATT-CAT----T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGAT-TCTGTCCTATTTTTA--GA-T---GTTATTCA-------AA--------TACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGAT-AC-------TTTTTA-TGAATC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT----------AAA--AATAAAAATTGAA-T----AAA--GCTGAA-TAAT-T-CATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT-----------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --GC-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TC-------CAT----AC----TG-T--GATTTTCTGGCTATG-----AA--GTTGTC-TTTCT----TTATtcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------C---AAATGA--AAATTTAAAA-T----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA--A-TTTT-GAG---ACTCTACTC-AATTTAACGTCATTG---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGATTTCAC-CATCCCCTTCA---TA--GAA---------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----GCCC--------AT----AG----CG-T--AACTTTGGCTAT--G-----AACAGTGGTC-TTC------TCATAAAAAGT-TGG-GT-T--G---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--AC-A---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATCTTT-AGAT-ACTG-C-ACAAC--GGAAATTTTTA-TA-TGGAA----TGAATT----CAA--AATT--------CTAA--TT-CAC------A---GATGAAGAACTATAT--T-GGA-ATC--AGTTA--T-C-TAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTT-AGATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTTT---TT-T-C----T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATAT--AGAGATAAA-------TTTTTAGTGA-TCACATT-TTCA-------AAT-------TACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAAAT-TT----AT------CCCCAAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAG--TCAGATAAC----GTTA-CG------AC-T-A-A-CTGTT-GTGGTTTCAC-TATCCTCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TAATAAAA-GT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAATCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTT---T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGAT-CC-------TTTTTA-TGACTC-CATT-TTCAATACTTGAG--------TACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA--A-TTTT-GAG---ACTGTACTC-AATT-AACGTCATTTAGGT-GG-TAAGATAAC----GTTG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-GATCCTCTTCA---TA--GAAAAGAG----C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----GCCCATACTGCTAT----AC----TG----A-------------T-----AA--GTGGTC-TTTCTCTTCTCATAA---GT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGGAA---GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-TTGGA-ATC-CAGTTC--T-CCTAAATACA-T--TCCTTA-CATATT----CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTAT--T---TT-C-T----T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA--CAA----TT-CAAACAAATATT----ATTAGTCACTC-AAA--A--AAAGTTGGAA-CCATAAAA--GCTGAGATAATATGCATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTT---TAGGGTCATATAACA---GTTA-CGTATACAACGT-AGA-CTGTTTGTGGTT-CACTCA-CTCCTCTAAACTA--GAAAAGGGG--GC-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCA-------CAT----CCAGCTTGAT--A-------------GAT---AA--GTGG-C-TGTCA----TAATAAAA-GT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAATCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CTAT--TACCAC------AAGCAA------GCTGTATA-T-TG--ATCACAGATCAAC-G-TAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT-Ggtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc-------------G-----AA--GTGGTCCTTTAT----TCATGAAA-GT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAATTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CTA---TA-CACGGATGAA---GA------ACT-TATATT-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTT-GGATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC----T---TT-T-TTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATATA-A-AGAT-CC-------TTTTTA-TGA-TC-CATT-TCCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctatGAAATCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACG-TATA-T-TGA-ATC-CAGTTC--TTC-TAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT----T---TTTC-T----TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CAT-AGATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATCT---T---TT-C-T----T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGAT-CC-------TTTTTA-TCA-TC-TAAT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATA--GAGAT-AC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg
blockSeqs : CA C T A GAA . CTA A . CGAAAA AA G A . . . TGATCA T GCTATAT . AT . TT . T A ATTAGTCACTC AAT T CCATA . TT A G G C T GG . CAAA T TAA T AGG G A . TATACA . G . T T T AAC . G . AG T AGT C AG A AACA CATACTGTGATTTTCTGGCTATG CA C CTTC A . C G TTT C G G . T T CA A . T . AGAT CACGAGGAGAG G GAG AG CGAAGTAAG . T G T G AACAA . G TA C C T . AT TAAAAACG A AAT A G A T CC CG T . G T ACGG T GT AG ATGTG A C GGATGAA TGAAGA A AT T . A CAA T C G AA G TC AT . A TT . C . T . A . . . . GCT G TCTTT TC TTTC CT . . T . A . T . . . GA AC . . A . T . G TTTT T . C . G . A C T CAG . . C AG AA . G A A . ATACTTG TACTGTAG . A T . T T A . T . . A . A
blockSeqs : . . . . . . C A . . C G . . . . AT T T . AT . T . T . ATCCCC TGA A T . AT . . . . . GG . A . . . . . . . . . . . . . T . . G . . . . . . . . ATAGCGTAACTTTGGCTATG . . . . . . . GC T A G . . T . C . T . . G . . . . . . G T . . . . . . . . . T AAATG A A . T . C C . G . . A . T T . . T . AAGC . G A . . . A . . . . . T T . G T . A . . . . . . . . . T ATT T . . . . G . . . . . . . GA . . . . . A . . TTC . . . . . . . . G CAG . . . A A . . C . . . TACTGTAG . . . . C . . . . . . . . A
blockSeqs : . . . . . . A G . . A C . . . . CT T T . T . T . A . ATC A T T . T . . . . . A . A . . . . . . . . . . . . . T . . . . . . . . . . . CATCCAGCTTGATAGAT . . . . . . . . C G G . . A . . . A . . G . . . . . . G T . . . . . . . . . T AAATG A A . T . A C . . . . A . T T . . . . A . . A . . . C . . . . . T . . G T . A . . . . . . . . . G TT C . . . . G . . . . . . . G . . . . . T . . C . . . . . . . . A CAG . . . A C . . . . . . T . . . . C . . . . . . . . A
blockSeqs : . . . . . . T A . . A C . . . . AT . . . A . . . A . AT A G T . T . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . ATACTGCTATACTGAT . . . . . . . . . G A . . T . . . T . . G . . . . . . G T . . . . . . . . . T AAAC A A . T . A C . . . . T . T T . . . . A . . A . . . C . . . . . T . . G T . C . . . . . . . . . G T C . . . . T . . . . . . . A . . . . . A . . T . . . . . . . . A CAG . . . A T . . . . . . . . . . . T . . . . . . . . A
blockSeqs : . . . . . . A . . . . . . . . . . . . CATACTGTAG . . . . . . . . . . . . . . . . . T . . G . . . . . . . . . . . . . . . . . G AAA A A . T . C T . . . . T . T T . . . . A . . A . . . C . . . . . T . . G T . A . . . . . . . . . G T T . . . . G . . . . . . . A . . . . . T . . T . . . . . . . . T CAG . . . . C . . . . . . . . . . . C . . . . . . . . A
blockSeqs : . . . . . . A . . . . . . . . C . . . . . . . . . . . . . . . . . A GAG . . . . . T . . . . . A . T T . . . . A . . . . . . . . . . . . T . . A . . A . . . . . . . . . . T C . . . . T . . . . . . . A . . . . . . . . T . . . . . . . . A G . . . . T . . . . . . . . . . . T . . . . . . . . G
blockSeqs : . . . . . . C . . . . A . . T . . . . . . . T C . . . . C . . . . . . . . . . . C . . . . . . . . T
blockSeqs : . . . . . . C . . . T . . . . T G . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** **** A* ** **** **** ATCC************ T***** ** T* A*** **** ** *** CATACCGTAACGGATG****************************** G* T* ****** G********** G* AAACG*** A** C** T** ******** *** A* T*** G* T* *** *** TT****** C** ** N* *** A** ** ***** **** T***** *** ** CAG******** ** ******* ** C* ****
originalCons : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TT----AT------CTC-AAA--A--AAAGTTTGAA-T----AAA--GCTGAATTAAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA--AATTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGGG--GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCC-------CAT----AC----TG-T--A-------------G-----AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC----T---TT-C-T----T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
finalCons : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAATT-TTATCC------------AAA--A--AAAGTTTGAAT-----AAA--GCTGAAT-AAT-T-CATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCAA---TTTT-GAG---ACTGTACTC-AATTTAACGTCATTT---TAGG-TCAGATAAC----GTCG-CG------ACGT-A-A-CTGTT-GTGGTTTCAC-CATCCCCTTCA---TA--GAAAAGGG---GC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCCCATACCGTAACGGATG------------------------------AA--GTGGTC-TTTCT----TCATAAAA-GT-CGG-GT-TTTG---AAGTTCCCCCAGATACG-CAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGTG----------CT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTCG-GTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TTAAACG---GGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTGC--ATAAC--GGAAATCTT-A-TA-TGGNA----TGAATTT--TCAA--AATT--------CTA---TA-CAC------A---GA------ACT-TATA-T-GGA-ATC-CAGTTC--T-C-TAAATACA-T--TCCTTA-CAGATTT---CGTTGGC--GTCT-CTTG-GATAATTGT-TTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATCTT------TTC--T----T--GTCACCAA-TAG--TCAGGTACTGN-TC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTAA--AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-TT-----AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNACAG--------TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Alignments
lowQualScore : 1111 222222 11 11 111111 2222222 1111 11 1111 111 4444444444444444 222222 11 11 222 111 222 2222 222222 111 111 11111111 111 222222 888888888888888888888888888 1111 1111 222 11 1 111111 1111 22222222222 111 222222222 11111 11111111 33333333 111 3333333333 11 1 11111 11 11 111 111 111 2222222 111 111 111 11111 1111 111111 111 11111111111 22 1111111 1111111 33333333
lowQualScore : 55 3 3 3 666 55 777 6 4444 333333 33 1 8 11 8 8 444444 6 3333333 7777 44 8 44 7777 0 444 8 6666666666666666 777777 11 8 8 8 999 6 6 8 11 8 8 222 444 8 11 0 222 5555 8 333333 8 8 8 8 0 8 5 444 444 0 66666666 6 99 6 111 6 99 6 111111 444444444444444444444444444 4 77 5 2222 77 6 0000 000 5 1 77 6 6 00 99 1 5 1 666666 2222 55555555555 5 000 77 4 222222222 5 5 88 1 5 44444 5 5 77 5 5 5 5 77 99999999 8 77 5 55 5 1 777 66 4 4 4 4 1 9999 7 4 4 66 00000000 5 333 5 7777777777 66 7 5 5 33333 5 77 5 66 5 11 5 55 00 000 1 000 5 5 5 5 5 5 5 000 3 3333333 000 77 5 77 66 5 5 5 5 5 5 000 222 77 77 44444 5 5 5 2222 5 888888 5 000 5 5 5 0 77 5 5 1 44444444444 66 4 4 22 55 4444444 4 8 4 4 4444444 66666666 66 4 4 4 77 4 4 9999 4 4 4 4 4 1
lowQualScore : .. . . . ... .. ... . .... ...... .. . . .. . . ...... . ....... .... .. . .. .... . ... . ................ ...... .. . . . ... . . . .. . . ... ... . .. . ... .... . ...... . . . . . . . ... ... . ........ . .. . ... . .. . ...... ........................... . .. . .... .. . .... ... . . .. . . .. .. . . . ...... .... ........... . ... .. . ......... . . .. . . ..... . . .. . . . . .. ........ . .. . .. . . ... .. . . . . . .... . . . .. ........ . ... . .......... .. . . . ..... . .. . .. . .. . .. .. ... . ... . . . . . . . ... . ....... ... .. . .. .. . . . . . . ... ... .. .. ..... . . . .... . ...... . ... . . . . .. . . . ........... .. . . .. .. ....... . . . . ....... ........ .. . . . .. . . .... . . . . . .
lowQualScore : 00 6 6 6 444 55 444 0 2222 000000 66 0 0 00 0 0 000000 0 8888888 0000 66 0 00 0000 8 000 0 2222222222222222 000000 00 0 0 0 222 7 7 0 44 0 0 000 000 0 66 8 000 0000 0 000000 0 0 0 0 8 0 6 000 000 8 22222222 7 22 7 777 7 22 7 888888 999999999999999999999999999 3 99 7 1111 44 7 8888 888 2 0 77 7 7 22 22 4 7 7 444444 1111 77777777777 7 000 99 3 999999999 7 7 77 4 7 33333 7 7 99 7 7 7 7 66 11111111 4 99 7 66 7 0 333 99 4 4 4 4 0 4444 3 4 4 11 66666666 0 888 7 6666666666 33 1 7 7 11111 7 99 7 99 0 99 0 22 77 000 3 000 7 7 7 7 7 7 7 000 0 7777777 000 99 7 99 77 7 7 7 7 7 7 000 444 99 99 33333 7 7 4 1111 7 999999 7 000 7 7 7 1 99 7 7 0 66666666666 11 4 4 77 44 4444444 4 9 4 4 4444444 77777777 11 4 4 4 11 4 4 4444 4 4 4 4 4 0
consensus : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAA---TT-TT------A-TC---N--AAAAAAAGTTTGAA-T----AAA--GCTGA-AT-AAT-T-C-ATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA-AA--TTTTGAG---ACTGTACTC-AATTTAACGTCATTTTAG--GGTCAGATAAC----GTCG-CG------ACGT-A-A-CTG-TTGTGGTTTCAC-CATCCCCTTCA---TA---GAAAA-GGG--G-C-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCCCATAC--CG-TA---A-----C-----GG---ATGA--AGTGGTC-TTTCT----TCAT-AAAAGT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAA-TCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CT-A---TA-CAC------A---GAACT-TATATTGGA-ATC-CAGTTC--T-CTAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC---T---TTTCT---T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
Reference ( family-1861 ) : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--ATTTACG----GTTTC------AAAAAAA-CANTTA-T--GCTTCA-TGTATA-AAN--T--GAAATTTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAA---TT-TT------A-TC---C--AAAAAAAGTTTGAA-T----AAA--GCTGA-AT-AAT-T-C-ATATG-TC-AGACAGGCATTT-GGGGAAAAAAAG-TCA-A---TTTTGAG---ACTGTACTC-AATTTAACGTCATTTTA---GGTCAGATAAC----GTCG-CG------ACGT-A-A-CTG-TTGTGGTTTCAC-CATCCCCTTCA---TA---GAAAA-GGG--G-C-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----GCCCCATAC--CG-TA---A-----C-----GG---ATGA--AGTGGTC-TTTCT----TCAT-AAAAGT-CGG-GT-TTTG---AAGTTCCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-AC-TT---AAACGGGAAA--GAAATG-TCGGTATCTTTTAGAT-ANTG-C-ATAAC--GGAAA-TCTT-A-TA-TGGNA----TGAATT-T-TCAA--AATT--------CT-A---TA-CAC------A---GAACT-TATA-TGGA-ATC-CAGTTC--T-CTAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-CAATA-TT-TT-CATCC-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATC---T---TTTCT---T--GTCACCAA-TAG--TCAGGTACTG-NTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGTACT----TCTTT-T---T--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGNA----CAG----TTT--TACA-AT-ATCAATATA-AGAGAT-NC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-TGA-CGTCAT-AGT-ATATTGT
gi|1 : TT--TCAA-T-AA--CATGT---CCCAGGA--ATTTTCGACTTGTTTC------AAAAAA--CATTTA-TATGCATTACTGTATATAAC--T--GGAAATTT------TGCAATATCAAGTGTTTAAGAA-CAACAGATTTCATACAA---TT-TTTTTAACA-TT------AAAAGGAGTTTGAACT----ATATTGCTGA-AT-TAT-T-TTATATG-TC-AGACAGGCATTT-GGGAAAATAAAGCTCA-AA--TTTTGAG---ACTGTACTC-A-TTTAACGTCATGTTA---GGTCAGATAACTCTTGTCGAC--------CGTTA-ATCTG-TTATGGTTTCAC-CAGTCCCTTCA---TATAAAAAAA-GGGTTG-CTCAATGAT--A-C-A---GACA--ACTG-----GC-T----GCCC-ATAT--CA-TTTTTA-----CTTTCTGGTCTCTGA---GTGGTC-TTTCT----TCAT-AAAAGTTCGG-GT-TTTG---AAGTTCCCCCAGATACTGCATTG-TCCTTG--TCT-GTTGATTATGTTCCTGTTTATCCAGA----TTGAAATAT-------------------AT--GAA-----CA---------GGTTG-ATGTCCAGTTAA-AG-----AAAATGCTTT-AC--AACA-TCCAATT-TGCAA-ACAC-AT-------------------TG-TCGGTAT--TTTAGAT-GTTG-CGATAAC--GGACA-TTTT-ACTA-TGAAA----TGATTT-TGTTAA--AATTGCATTAAGCT-AAGATA-GAA------T---GAACTGTAT--TGGACATC-CCATTC--T-CTAAGTACA-T--TCTTTA-CAGATTAAT--GTTAGT--GCCTACTTAGGATAATTG--TTTCAGCTCCTTTCTCT-CAATAGTT-TTGCATTCGGATTTTACTAGCCCTCGTGTCTTA---TAAGCGTATC---TATATTCAT---T--GTCACCAAGTAGTATCAGGTACTGTCTCTAAATTCA-GCAAACAA-TTAGGAAAATCGTGTATTCGTTCTA-GCAA--GTAATGCGCCTTTCCAC-ATCTGAGGTACTAATATCTTT-T---TTCAA-AACCAGAT-TGTTCACTTAGGGT-CG-CGTAATTT-T-CAATTCTCACTGTATACTCAGGTTCTTTACTACATAT-ATCAATAT--AGCGAT-TCTGTCCTATTTTTA--GA-T---GTTATTCA-------AA--------TACC-GAATACAACT-GACC-TTTTGATAGGTGTGCA-GT-AAATACAAA-TATTGAGTAATCGTCAT-AGTCATATAGT
gi|10 : CTCATAGTA------G----TTT--T-CA-AT-ATCAA-ATA-AGAGAT-AC-------TTTTTA-TGAATC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC--TTTGAT-GATG--CA-TC-AA----AAA-TA-TTA-AGA-CGTCAT-AGT-AT-TTGTtgtgtttacactggtaaatcatatatgctggaatacattgctttcaaacgcaagttatggtaagttatacataaagagattagatgtagtggaaagctcatggattccgaagttgggacaatgtttttattgaaaac
gi|11 : GGTGTT--TCAT-T-AAA-CATGT---CCCA--A--CTTTACG----GTTTA------AAAAAAC-CAGTTA-T--GCTTCA-TGTATA-AAA--T--GAAA-TTT------TGCAA----AAATGTTTA-GAT-CAA----TTTCATACAA---TT-TT------A-TA---A--AAATAAAAATTGAA-T----AAA--GCTGA-AT-AAT-T-C-ATATG-TC-AGAgttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttaattgaaa
gi|12 : ag-GTTGAC-ATGTCC------ATCCAGA----GTGAAAAGT----------GCT-CC---ATCAGAAA--ACCA---------TAA-G-ACGTC-GTTTAA-AC-----AAG-TGTTTT-TTTAAAAA-TCCATTG-TGCAATA-AC-TT---AAAC-GGAAA--GAAATG-TTGGTATCTTTGAGAT-GT------------------TTTT-A-TA-TGGTG----TGAA-T-T-TCAA--Annnnnnnnnnnnnnnnnnnnnnnnngaaggtctcttaagctacacctttgatt
gi|13 : --G-C-CTATGAA--A-CCA---GAACT-ACTCA--ATGC-T----G-TCCATAC--TG-TG---ATTTTCT-----GGCT-ATGA--AGTTGTC-TTTCT----TTAT-tcgtatttcaaaatttagttg
gi|14 : GGTGTT--TCAA-T-AAA--ATGT---TCCC--A--ACTTtattatcata
gi|15 : agtatgcaatacttcaggtggaaagaatatgcagacatctgGGTGTT--TCAA-T-AAA-TATGT---CCCA--A--ctgtat
gi|16 : agGGTGTT--TCAA-T-AAA-CATGT---CCCctgt
gi|2 : GTGTT--TCAA-T-AAA-CATGT---CCCA--A--TTTTACG----GATTC------ATAAAAA-CAGTTA-T--GCTTCA-TGTATA-AAC--T--GAAATTTT-------GCAA----AA-TGTTTA-GAT-CAA----TTTCATACAA---TT-TT------A-TC---A--AATGAAAATTTAAAAT----AAA--GCTGA-AT-AAT-T-C-ATATG-TC-AGACAGGCATTT-GG--AAAAAAAG-TCA-A---TTTTGAG---ACTCTACTC-AATTTAACGTCATTGTA---GGTCAGATAAC----GTCG-CG------ACGT-A-A-CTG-TTGTGATTTCAC-CATCCCCTTCA---TA---GAA----------C-CTATGAT--ATCCG---GACTTCATCTA--GTGC-T----G-CCCATAG--CG-TA---A-----CTTT--GGCT-ATGAACAGTGGTC-TT--C----TCATAAAAAGT-TGG-G---TTG---AAGGTCGCCCA-ATAC-GCAT-G-TCA--G--CGTAGTT-AT-ATGTCC------ATCCAGA----GTGAATTGT----------GCT-TC---ATCAGAAA--A-CA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTC-TC--AACACTCCAATT-TGCAA-A-A--TT---AAA--GGAAA--GAAATG-TCGGCATC-TTTAGAT-ACTG-C-ACAAC--GGAAATTTTT-A-TA-TGGAA----TGAA---T-TCAA--AATT--------CTAA---TT-CACAGATGAA---GAAC--TATATTGGA-AT--CAGTTA--T-CTAACTACA-T--TCCTTA-AAGATT--T-GGTTGGC--ATCT-CTT-AGATAATTG--TTTCA---CCTTT---T-CAATA-TTATT-CATCC-A--TTCA-T-GCCCTA-TGTCTTA---TA-GCGTATCTCTT---TTTTC---T--GTCACCAA-TAG----AGGTACTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATA-AG--TTC---CTA-G-AAACG--ATGC-----TTCACAATCTG-GGTACT----TCTTTGT---C--AA-AACC---TCCGTTCAC-TAGGGCGTGACG--ATTTAT-CCATTCTCATATGA----C-------CT--TACA-ATCATC-ATAT--AGAGATAAA-------TTTTTAGTGA-TCACATT-TTCA-------AAT-------TACATGAATAC--CTAGACC-TTTTGAT-GATGT-CATTC-AT----AAA-TATTGA-TGA--G-CACAAGT-ATATTGTctgtatga
gi|2 : GTGTT--TCAACT-AAA-CATGT---CC----A--ACTT-CG----Ggtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatccgaagttggacatgtttagttgaaacact
gi|3 : gtgtttcaataaacatgtcccaattttacggattcataaaaacagttatgcttcatgtataaactgaaattttgcaaaatgtttagatcaatttcatacaattttatcaaatgaaaatttaaaataaagctgaataattcatatgtcagacaggcatttggaaaaaaagtcaattttgagactctactcaatttaacgtcattgtaggtcagataacgtcgcgacgtaactgttgtgatttcaccatccccttcatagaacctatgatatccggacttcatctagtgctgcccatagcgtaactttggctatgaacagtggtcttctcataaaaagttgggttgaaggtcgcccaatacgcatgtcagcgtagttatatgtccatccagagtgaattgtgcttcatcagaaaacatatgatgtcggttaaacaaatgtttctcaacactccaatttgcaaaattaaaggaaagaaatgtcggcatctttagatactgcacaacggaaatttttatatggaatgaattcaaaattctaattcacagatgaagaactatattggaatcagttatctaactacattccttaaagatttggttggcatctcttagataattgtttcaccttttcaatattattcatccattcatgccctatgtcttatagcgtatctcttttttctgtcaccaatagaggtactgttcaaatttagcaacgattcggaaaataagttcctagaaacgatgcttcacaatctgggtacttctttgtcaaaacctccgttcactagggcgtgacgatttatccattctcatatgaccttacaatcatcatatagagataaatttttagtgatcacattttcaaattacatgaatacctagaccttttgatgatgtcattcataaatattgatgagcacaagtatattgtgtttacaacttgtaaaacatatgctggaataaagcttgtcaaatgtcagttttgtaaagttaatagtcagttttgtggaaagatatgggacatGGTGTT--TCAT-T-AAAACATGT---CCCA--A--ACTTGCG----GTTTC------AAAAAAAACACTTA-T--G-TTCA-TGTATA-AAA--T--GAAATTTT------TGTAA----AAATGTTTA-GATTCAA----TTTCATACAA---AT-TT------A-TC---CCCAAAAAAAGTTTGAA-T----AAA--GCTGA-ATTAAT-T-C-ATATGGTC-AGACAGGCATTT-GGGGAAAAAAAG-TCA-A---TTTTGAG---ACTGTACTC-AATTTAACGTCATTTTA---G-TCAGATAAC----GTTA-CG------AC-T-A-A-CTG-TTGTGGTTTCAC-TATCCTCTTCA---TA---GAAAA-GGG--GGC-CTATGAT--A-CCG---GACCT-ACTTA--ATGC-T----ACCCCATAC--TG-TA----------------------GA--AGTGGTC-TTTCT----TAAT-AAAAGT-CAG--T-TTTG---AAGTTTCCCCAGATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGACC------ATCCAGA----GTGAAATGT----------GTT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GGTTAA-AC-----AAA-TGTTTT-TC--AACA-TTCAA-T-TGCAA-A-AC-TT---AAATGGGAAA--GAAATG-CCGGTATCTTTTAGAT-AATGCC-ATAAC--GGAAA-TCTT-A-TA-TGGAA----CGAATT-T-CCAA--AATT--------CT-A---TA-CAC------A---GAACT-TATA-TGGA-ATC-CAGTT---T-CTAAATACA-T--TCCTTA-CAGATT--T-CGTTGGC--GTCT-CTT--GATAATTGTTTTTCA---CATTT---T-CAATA-TT-TT-CATCT-AATTTCACT-G-CCTC-TGTCTTA---TAGGCGTATC-------TTTCT---T--GTCACCAA-TAG--TCAGATACTG-GTC-AAATTTA-GC-AACGATTTCGGAAAAGC-TGT-TCC---TTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-T---T--AA-AACC---T-TGTTCAC-AAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATATAGAGAGAT-CC-------TTTTTA-TGACTC-CATT-TTCAATACTTGAG--------TACCTGAATAC--CT-GACCTTTTTGAT-GATGC-CA-TCAAA----AAA-TATTTA-TGA-CATCAT-AGT-ATATTGTt
gi|4 : AAC--G-AAA-TCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CT-A---T
gi|4 : -TC-AGACAGGCATTT-GAA-AAAAAAAG-TCA-A---TTTTGAG---ACTGTACTC-AA-TTAACGTCA-TTTAGGTGGTAAGATAAC----GTTG-CG------ACGT-A-A-CTG-TTGTGGTTTCAC-GATCCTCTTCA---TA---GAAAA--GA--G-C-CTATGAT--A-CCG---GCCCT-ACTTA--ATGC-T----G-CCCATAC--TGCTAT--A-----C-----TG---AT-A--AGTGGTC-TTTCTCTTCTCAT---AAGT-CAG-GT-TTTG---AAGT--CCCCAAATAC-GCAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----ATGAAATGT----------GCT-CC---ATCAGAAA--ACCA---------TAT-G-ATGTC-GG---A-AC-----AAT-TGTTTT-TC--AACA-TTCAATT-TGCAA-A-AC-GT---AAATGGG-AA--GAAATG-CCGGTATCTTTTATA--AATG-C-ATAAC--CGAAA-TCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CT-A---TA-CAC------A---GAACG-TATATTGGA-ATC-CAGTTC--TCCTAAATACA-T--TCCTTA-CATA-T--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---T-TAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTAGCTTATTTGTGTTA--T---TTTCT---T--CTGTCCAA-TAG--TCAGGTACTG-GTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GG-ATT----TTTTT-T---T--AA-AACC---T-TGTTCAC-TA-GGT-CGACG--ATTT-TCCCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTcagacaggcatttgaaaaaaaaagtcaattttgagactgtactcaattaacgtcatttaggtggtaagataacgttgcgacgtaactgttgtggtttcacgatcctcttcatagaaaagagcctatgataccggccctacttaatgctgcccatactgctatactgataagtggtctttctcttctcataagtcaggttttgaagtccccaaatacgcatgtcctgcctgttgatatgtccatccagaatgaaatgtgctccatcagaaaaccatatgatgtcggaacaattgtttttcaacattcaatttgcaaaacgtaaatgggaagaaatgccggtatcttttataaatgcataaccgaaatcttatatggtatgaattttcaaaattctatacacagaacgtatattggaatccagttctcctaaatacattccttacatattcgttggcgtctcttggataattgttttcacatttttaatattttcatctaatttcactgccctctgtcttagcttatttgtgttattttcttctgtccaatagtcaggtactggtcaaatttagcaacgattcggaaaatctgtttcctaaaagatgcttcacatctgggatttttttttaaaaccttgttcactaggtcgacgattttcccattctcatagaacagttttacaatatcaatatagagattctttttatgatccattttcaaatactgtagtacctgaatacctgaccttttgatgatgccatcaaacatatttatgtcgtcatagtatattgtgtttacactgtaaaactattgctggaataaatgctttcaa
gi|5 : atagaattttgaaaattcataccatataagatttcgtTGTTCATCAA-TTAAA-CA-GTGAATCCA--ACTATATACG----ATTTTCGAAAAAAAAAAA-CACTTAAT--GCTTCA-TGTATC-AATGATCAGAAATTTTGCTATATATAA----TAA-GTTTA-GA--CAA----TT-CAAACAAATATTATT------AGTCACTC--AAAAAAAGTTGGAA-CCATAAAA--GCTGAGAT-AATATGC-ATATG-TCCAGAGAG-CATTTTGGGGAAAAAAAG-TCACAAATTTTTGAGTAAGCTGTACTCTAATTTAACGCCATTTTAG--GGTCATATAACA---GTTA-CGTATACAACGT-AGA-CTGTTTGTGG-TTCACTCA-CTCCTCTAAACTA---GAAAAGGGG--G-C-CTATGATAGA-ACGAGTGACCT-ACTTAAGATGCATAACAGCCACATCCAGCT-TG---A-----T-----AG---AT-A--AGTGG-C-TGTCA----TAAT-AAAAGT-CAGCGTGTTTGGC-AAATT-CCCCAGAT-C--CAT-GTTCCA-GCACCTCGTTGAT-ATG-AC------ATTGAGAAGATGCGAGAGGCCACGAGGAGAGCTGTCGAGATCAGAAAAGAACACGAAGTAAGTAT-GTATTTC--GTTAAGACAACAAAAA-TGTTCTGTC--AACA-TTCAATTCTGCCA-A-CC-AT---GA--GGGAAAATGGGATGATC-GTA----TTAGATAACTG-C-ATAATCGGGAAA-TCTTGA-TAGTGGAAACGGAGAATTGT-CCAAAGAATTATGTG---CT-AT--TACCAC------AAGCAAGCTGTATA-TTG--ATCACAGATCAAC-GTAAATACAGTAATCCTTAGCAGATT--TCCGTTGGCT-GTCT-CAT-Ggtttacactgtaaaactattgctggaataaatgctttcaa
gi|6 : agggc---ATGA--AGTGGTCCTTTAT----TCAT-GAAAGT-CGG-GT-TTTTTTTAAGTTCCCC-AGATAC-ACAT-G-TCCT-G--CCT-GTTGAT-ATGTCC------ATCCAGA----GTGAAATGT----------CCT-CC---ATCAGAAA--ACCA---------TAT-G----------------------AA-TGTTTT-TC--AACA-TCCAATT-TGCAA-A-ACATTTAAAAACGGG-AA--GAAATG-TCGGTATCTTTTAGAT-ATTG-T-ATAAC--GGAAA-TTTT-A-TA-TGGAA----TGAA-T-T-TCAA--AATT--------CT-A---TA-CACGGATGAA---GAACT-TATATTGGA-ATC-CAGTTC--T-CTAAATACA-T--TCCTTA-TAGATT--T-CGTTGCCATATCT-CTT-GGATAATTG-TTTTCA---CCTTT---T-CAATA-TT-TT-CATCC-TATTTCACT-GCCTTC-TCTCTTA---TAGGCGTATC---T---TTTTTTTCT--GTCACCAA-TAG--TCAGGTAGTG-TTC-AAATTTA-GC-AACGA-TTCGGAAAATC-TGT-TTC---ATAGA-AA--G--ATGC-----TTTAA-ATCTG-GGTACT----TCTTT-T---T--CATAACC---T-TGTTCTC-TAGGGT-CGACG--ATTT-T-CAATTGTCATAGTA----CAG----TTT--TACA-AT-ATCAATATA-A-AGAT-CC-------TTTTTA-TGA-TC-CATT-TCCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC--A----AAA-TATTTA-TGA-CGTCAT-AGT-ACATTGTcttattgaagttgccactacttagagattcattaccactaattcactgc
gi|7 : aactttctggctGAAA-TCTT-A-TA-TGGTA----TGAATT-T-TCAA--AATT--------CT-A---TA-CAC------A---GAACG-TATA-TTGA-ATC-CAGTTC--TTCTAAATACA-T--TCCTTA-CATATT--T-CGTTGGC--GTCT-CTT-GGATAATTG-TTTTCA---CATTT---TTCAATA-TT-TT-CATCT-AATTTCACT-GCCCTC-TGTCTTA---TAGGCGTATT---T---TTTCT---TCTGTCACCAA-TAG--TCAGGTACTG-GTC-AAATTTAAGC-AACGA-TTCGGAAAATC-TGT-TTC---CTA-A-AA--G--ATGC-----TTCAC-ATCTG-GGAATT----TCTTT-TTTTT--AA-AACC---T-TGTTCAC-TAGGGT-CGACG--ATTT-T-CCATTCTCATAGAA----CAG----TTT--TACA-AT-ATCAATAT--AGAGAT-TC-------TTTTTA-TGA-TC-CATT-TTCA-------AATACTGTAGTACCTGAATAC--TG-AACT-TTTTGAT-GATGC-CA-TC-AA----ACA-TATTTA-TGT-CGTCAT-AGT-ATATTGTgtttacactgtaaacatattgcaagaataaatgctttcagatgcagttattgta
gi|8 : ac--T-CGTCGGT--GTCT-CAT-AGATAATTG-TCGACA---CATTT---T-CAATA-TT-TT-CATCC-AATTGCCCT-GCCCTC-TGTCTTA---TAGGCGTATC---T---TTTCT---T--GTCATCAA-TAG--TCCCGTACTG-TTC-AAATTTT-AT-GACAA-TTCCGAAGACC-TGT-TTG---CTAGA-AA--G--ATGC-----TTCAC-ATCTG-AGTACT----TCTTT-T---TTCAA-TACC---C-TTTTCAG-TAGGTT-CGGCG--ATTT-T-CCATTTTTATAGTA----CAG----TTT--TACA-GT-ATCAATAT--AGAGAT-CC-------TTTTTA-TCA-TC-TAAT-TTCA-------AA--------TACCTGAATAC--CT-GACC-TTTTGAT-GATGT-CA-TC-AA----AAATTAATTA-TAA-TGCCAT-AGT-ATGTTGTgtttacactgtaaaacatattgctggaataaatgctttcaaa
gi|8 : T--TCAA-T-AAA-CATGT---CCCA--A--CTTgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgaagttgggacatgtttattgaa
gi|9 : tcgtcggtgtctcatagataattgtcgacacattttcaatattttcatccaattgccctgccctctgtcttataggcgtatcttttcttgtcatcaatagtcccgtactgttcaaattttatgacaattccgaagacctgtttgctagaaagatgcttcacatctgagtacttcttttttcaatacccttttcagtaggttcggcgattttccatttttatagtacagttttacagtatcaatatagagatcctttttatcatctaatttcaaatacctgaatacctgaccttttgatgatgtcatcaaaaattaattataatgccatagtatgttgtgtgtacactgtaatacatattgccgcaataaatgctttcagatgcagttattgttacgttgatatgtcacgtttgtgcaaagatatagacatccgCTCATAGTA------G----TTT--TTCA-AT-ATCAATATA--GAGAT-AC-------TTTTTA-TGA-TC-CATT-TTCA-------AA--------CACCTGAATAC--CT-GACC-TTTTGAT-GATGC-CA-TC-AA----AAA-TATTTA-AGA-CGTCAT-AGT-ATTTTGT
gi|9 : GGTGTT--TCAA-T-AAA-CATGT---CCCA--A--CTTgtttacactgtaaaacatattgcttaaataaatgctttcaaatgcagttattgtaaagttaatatgtcatgtttgtggaaagatatgagcatccgaagttgggacatgtttattgaaacaccctg