lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111 111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 1 11111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44 666 4 11 77777 55 4 11111111111 1 33333 1 33333333333333333333 11 1 11 1 333333333 888888888888 55555 22 1111 33 33 5555555555 3 1 5555 2 1 2 000000000000000000 1 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 1111111 33 1111111 888888888888888888888888 333 4444 22 1 22 3333333 33333 1 666 444444444444444444444444444444444444444444444444444444444444444 2 33333 1 222 2222 222222 2 1
lowQualScore : 5 2 4444 3 5 44444444 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66 111 0 22 55555 55 2 44 0 6 99999999999 1 5 6 88888 3 3 99999999999999999999 3 88 7 2 88 3 6 888888888 555555555555 2 7 3 77777 2 44 3 9999 8 11 00 8888888888 6 2 3 8 1 3 6 1111 6 5 6 0 888888888888888888 6 7 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 7777777 6 6 3 77 2 8888888 1 6 666666666666666666666666 3 111 1111 11 6 7 11 444 6666666 33333 3 5 111 3 999999999999999999999999999999999999999999999999999999999999999 2 3 8 88888 3 333 2 3333 888888 0 0
lowQualScore : . . .... . . ........ ................................................................................................................................................................................... .. ... . .. ..... .. . .. . . ........... . . . ..... . . .................... . .. . . .. . . ......... ............ . . . ..... . .. . .... . .. .. .......... . . . . . . . .... . . . . .................. . . . ......................................................................................... . ....... . . . .. . ....... . . ........................ . ... .... .. . . .. ... ....... ..... . . ... . ............................................................... . . . ..... . ... . .... ...... . .
lowQualScore : 0 5 2222 6 0 55555555 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000 0 00 00000 00 5 00 0 0 22222222222 0 0 0 77777 7 3 00000000000000000000 0 55 3 0 33 3 7 333333333 777777777777 5 0 2 88888 0 00 2 5555 0 22 00 4444444444 0 5 8 0 0 3 7 7777 7 0 0 0 555555555555555555 7 3 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0000000 7 7 2 55 5 2222222 0 0 555555555555555555555555 0 555 5555 00 0 0 00 555 5555555 55555 0 0 000 0 000000000000000000000000000000000000000000000000000000000000000 5 0 5 33333 3 333 5 8888 888888 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAANATCC----G-TTTTTAGCTCACCTGAACCGAAGG--------AGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTTCTTCTCAAGAACCACTGGGCCAAATTCAA-CCACA--CTGGTACAAATCATCCTTTGGGTGAA----GGGATTCAAGTTTTGTTCAAATGAAGGACCAGGCCCCT-TCAAAGGGGAGATAATCGCGAAAA-GC--AAAAATAGGGNNNNNNNNNNNNNNNNATAGG--GGGAGATTCAAGTTTGTTCAAATCATGACCC--CCGGGGGT-ACGGTGGGGCCA-CACANTAGGG-ATCAAAGTGTCTACATNNACATGCAGGTANATAGGGAAAAATCTTTT--AAAAT-CTTCT-CTCA--G-AACCA-C-GGG--C-A-GAAGGNTAGAAATTTATAT--TGAAAGTTTCC-TGATAT-GGTGGAG-A--TTCAAGGTTTGTTTTCAAA--TCATGACCCCCGGG-GGTA-CGGTG-GGGCCA---CAATAGGGGATCAAAGTTCTAACATGCAAGCAGATATATA--AGGGAAAATCTTTTAAAATTCTTCTTC-------CAAG-AACCAC-TGGG-GC---C-------CTGA---------GAAAGTTTCCTGAT-----ATA-G--TGGAGA-A----AGTTTGTTCAAATCATGACCC-C---CAGG-G-TAATGNTGGGGC--CA---CAATAGGGGATCAAAGTTCTAACATGCAGAAGTAT-GATANGGAGAAANTCTTTNAAAAATCCTTCTCATTGAACCAAAAGAGTGGGTATTTNCNCGAAAGNTTTCCTGAATGNAGGGGNAGATTCAAGTTG-TGTTCAGATNA-TNGCCCCCACCTGACATGGGTNNGGTTNGGNCCACACGNTAGGNGCATTNTAAATCCCAAACACTNCTCTCCTTCGTGAAGCAGCTG-CG-CTCAG---GTGAGCGA--TGTGG------CCCATGGGCCTC-TTGTTTT
Reference ( gi|1 ) : AACCTATCAAATATTTTGCATCTACGTGATAGCCTCTGAACGTTCTTGGTAACATCC----A-TTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTTTCGTTCAAGAAC-ACTGTTC--AATTCAAACCACAACTTGGTACAAATTATGCTT--GGTGAAGAAGGGGATTCAAA----GTT----------ACCAGGCCCCCATCAAA--AGAGAT-ATCATGAAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAA-TTTGTTCAAGTCATGACCC--CCAGGGAC-ACGATTGGACCC-TA-AGTAGGG-ATCAAATTGTCTTTGTTAATA-----ATATATAGGGAAAAATCTTTT--AAAAT-CTTCT-CTCA--A-AACCAACAGGG--CCAGAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTGATAT-GATGGAG-AG-TTCAAGGTTTGCTTCCAAACTTCATAACCCCCGGGAGGTA-CGATG-GGCCC----CAATAGGGGA-CAAATTCTTA-CAT---AGGAGAT-TATAAAAGGGAAAATCTTTTGAAAGTCTTCTTC-------CAAA-GACCACGTGGG------C-------CAGA---------GAAAGCTTCCTGAT-----ATACA--TG----------AGTTTGTTCAAATC-TGACCC-T---CAGG-G-TAATG--GGGGC--CA---CAATAAGGGATCAGA-TATTA-CATGCAGAATTATCGTTATGGAGA--TTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGA-TAT-GGAGTATATTCAAGTTATCGTTTAGATAAATCCCCTCCCTTTGA---GGGTTGGG-TGGGGTCACA-ATTAGGGA----TTAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---G-TG-CTCAG---GTGAGCTA--TGTGG------CC-ATGGGCCTC-TTGTTTTTGTA
gi|7 : TTGGGAAAACCCTCAAA-TTTTTAGCTCACCTGAACCGAAGG--------
gi|20 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatAACATGC----AGTTTTTAGCTCACCTGAACCGAAGt
gi|3 : atgATCA----G-TTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTTCTTCTCAAGAACCACTGGGCCAAATTCAA-CCACA--CTGGTACAAATCATCCTTTGGGTGAA----GGGATTCAAGTTTTGTTCAAATGAAGGACCAGGCCCCT-TCAAAGGGGAGATAATCGCGAAAA-GC--AAAAATAGGG
gi|16 : tC----G-TTTTTAGCTCACCTGAACCGGAGG--------
gi|24 : ataatggttattaagaaataaaagttca----A-TTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|27 : actccaata----A-TTTTTAGCTCACCTGAACCAAAGG--------
gi|25 : ttaa-TTTTTAGCTCACCTGAATCGAAGG--------tt
gi|21 : taag-TTTTTAGCTCACCTGAACCGAAGG--------ttcaa
gi|17 : ctcaaacctt-TTTTTAGCTCACCTGAACCGAAGG--------t
gi|23 : tgtcatattttagtgaacaacctcaatgg-TTTTTAGCTCACCTTAACCGAAGG--------
gi|26 : ttat-TTATTAGCTCACCTGACCCGAAGG--------ttcaag
gi|4 : attagATAGG--GGGAGATTCAAGTTTGTTTAAATCATGGCCC--CC--GGGT-ATGGTGGGGCCA-CACAATAGGG-ttca
gi|2 : tttatcGGA-ATTCAAGTTTGTTCAAATCATGACCC--TAGGGGGTAACGATGAGGCCC-CA-ATTAGGG-ATCAAA--GTT----TTAACATGCAGATATATAGAG--AAATTCTTTAAAAAAT-CTT-T-TTCATTG-AACCA------------AAAGAGTGGGTATTT---TCCTG-AAGTTTCC-TG--AT-GA-GGAGTAGATTTAAG--TTGGTTCattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaagaattttagaaatttatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|4 : atagtGGAGA--CAAGTTTGTTCAAATCATGACCC--CCAGGGGT-ACagataatgcctccacctgacataggttagatttagcttacagtggtacattctaaatcccaaacactgctcttcttagtgaagcagctgtgctcaggtgagcgatgtgatgtggcccatgggcctcttgttttaatagttacaaaatgtttttatttctag
gi|12 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaagaattttagaaatttatattaaagtttctgatatagtGGAGATCCAAGTTTGTTCAAATCATGACCC--CCAGGGc
gi|8 : agaattttagaaatttatattaaagtttcctgatatagtTTGTTAAAATCATGAACCATCT---GAT-ACAGTGGGGCCAGTACAGTAGGGGATCAAAGT-TCTACATGCA-A-----GTAGATAGGGAAAA-TCTTTT--AAATT-CTTCT--TAA--G-AACCACTGGGGGCCCAGgta
gi|4 : AAAT-TTCT--AAAATTCTTCTTCTCA--AGAACCA-CTGGA--C-ACGAAAGCT-GAAATTTATAC---GAAAGCTTCCTGAATATAGGGGGAG-A--TTCAA-GTTTGTTT--AAA--TCATGGCCCCCG---GGTA-TGGTG-GGGCCACA-CAATAGGGGA-TAAAgggggtattctagtttctt
gi|4 : TAGAAATTTATAT--T-AAAGTTTC--TGATAT-AGTGGAG-A----CAA-GTTTG--TTCAAA--TCATGACCCCCAGG-GGTA-Catattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|12 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaagaatttTAGAAATTTATAT--T-AAAGTTTCC-TGATAT-AGTGGAG-A--TCCAA-GTTTG--TTCAAA--TCATGACCCCCAGG-GGTA-c
gi|2 : agaatttG-AA-TTCAAG-TTTGTT--CAAA--TCATGACCCTAGGG-GGTAACGATGAGGCCC----CAATTAGGGATCAAAGTTTTAACAT----GCAGATATATA---GAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGA----GTGGGTATTTTC-------CTGA------------AGTTTCCTGATGAGGAGTAGATTTA----------AGTTGGTTCAGAT
gi|8 : atagtgGATA-CAGTG-GGGCCAGTACAGTAGGGGATCAAAGTTCTA-CATGCAAGTAGAT-------AGGGAAAATCTTTT-AAATTCTTCTT---------AAG-AACCAC-TGGGGGC---C-------CAGG---------Gaatgcctccacctgacataggttagatttagcttacagtggtacattctaaatcccaaacactgctcttcttagtgaagcagctgtgctcaggtgagcgatgtgatgtggcccatgggcctcttgttttaatagttacaaaatgtttttatttctag
gi|4 : ttgttaaaatcatgaaccatctAAAT-TTCTAAAATTCTTCTTCT------CAAG-AACCAC-TGGA------CACGAAAGCTGAAATTTATACGAAAGCTTCCTGA------ATATA--GGGGGAGATTCAAGTTTGTTTAAATCATGGCCC-C---C-GG-G-T-ATGGTGGGGCCACA---CAATAGGGGATgggtattctagtttctt
gi|4 : tttAAAGTTTC-TGAT-----ATA-G--TGGAGACA----AGTTTGTTCAAATCATGACCC-C---CAGG-G-atattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|12 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaagaattttagaaatttatattAAAGTTTCCTGAT-----ATA-G--TGGAGATCCA--AGTTTGTTCAAATCATGACCC-C---CAGG-G-gtacc
gi|2 : agaattttagaaatttatatt----------AGTTTGTTCAAATCATGACCC-T---AGGG-GGTAACGATGAGGC--CC---CAATTAGGGATCAAAGTTTTAACATGCAGA--TAT----ATAGAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTG--AAGTTTCCTGA-TGA-GGAGTAGATTTAAGTTG--GTTCAGATAA--TGCCTCCACCTGACATAGGTTAGATTTAGCTTACA-GT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTG-TG-CTCAG---GTGAGCGA--TGTGATGTGGCCC-ATGGGCCTC-TTGTTTTgta
gi|19 : atagtggaattcaTTTGTTCAAATCATGACAT-TAATCAGG-G-TAATGT-GGGGC--CA---CAAaatagttacaaaatgtttttatttctag
gi|8 : TTGTTAAAATCATGAACCAT---CTGATA-CAGTG--GGG-C--CAGTACAGTAGGGGATCAAAGTTCTA-CATGC--AAGTA--GATAGGGAAA--ATCTTTT--AAATTCTTCTTA
gi|4 : ATTTATACGAAAGC-TTCCTGAATATAGGGGGAGATTCAAGTT--TGTTTAAATCA-TGGCCCCC---------GGGTATGG-TGGGGCCACACAATAGGGG----ATAAagaaccactgggggcccaggggggtattctagtttctt
gi|5 : tCTTCTTTCCTTCATG-AACA---GGCGACTCAG---GTGA--TAATTGTGG------CCTATGGGTCTC-TTGTTTttcagctttcgtgtccagtggttcttgagaagaagaattttagaaatttatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|14 : gatttatactcgtagtgtcccaaatgttttaac-TG-CTCAGAATGTGAGC-G--TGTGG------CC-CTGGGCCTCTTTATTTTgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|22 : aGCGA--TGTGG------CCCATGGGCCTC-TTATTTaataattgtattatcttttgatttttagg
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ACTCTACATTTTACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCTAACAACATCCCGCGTACTAAGAATTTTCTATAGCGTCTGGTATAGGGATCACAGGTTTGTTCCAAGATCCAGGCCCGCCCTTCAAAGGGCAGACTAAATAATCACA
Unaligned ( gi|9 ): GAACTTGGGCCAGTTTTCAAATCAAGCTTGGCACATAATCATCTTTTCGGGTGGTTAAGAGGAATCTAGTTTTCTTCAGAATGAAGGGGCAATCCCTCCTAAAGAGAAGAAAAAAGACACAAATA
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|11 ): AAATTCAACCCCACGAATAAAGGGACAAGGTTCAAGTCTTGTTCGAAATGGTGAAGTGACCACGACCCAATCAAAGGGGAG
Unaligned ( gi|13 ): TAAGTTGGTTCAGACCTAATTGCCTAGGAACCAACATGGTTAGAATTTTAGTCCCACAGTGGTACCAACTCAAAA
Unaligned ( gi|15 ): AGTTTTATTGAAATAAAGGGCTATGCCCCTTCCAAAGGGAATTAATTGGGGAAAAATTAAAGATA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA
Unaligned ( gi|29 ): AGTAGATTTAAGTTGGTTCAGATAATGCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 111111111111111
lowQualScore : 1111 11111111 2 2 444444444444444444444444444444444444444444444444 2 3333 22222 33333 1 1111 11 11 11 3333333 44444444444 111 2222 222222222222222 111111 1111111111111111 11 11 1111111111111111 55 4 11 1 5555 1 111111111111111 1 2 2 2 333333333 1 1 111 3333 11 1 1 111 11 1111 11 11 11 222 11 1 2 222 1 5555555 2 11 2 33 1 2 7777777 2222 1 2 11 1111 444444444444 11 4444 555555555 33 11 2 222 1 66666666666666 222 1 111 2222222
lowQualScore : 1 5555 33333333 0 0 666666666666666666666666666666666666666666666666 3 0000 33333 33333 0 6666 33 00 99 8 0000000 8 88 44 00000000000 444 5555 0 6 3 222222222222222 6 6 555555 1 9999999999999999 00 33 6666666666666666 55 0 6 6 22 6 5 6 2222 1 5 666666666666666 1 5 0 0 0 444444444 0 0 444 3 2222 22 0 0 444 77 3333 11 11 33 6 333 88 7 5 8 000 0 1111111 3 3 77 0 00 7 6 0 4444444 7 9999 3 7 00 9999 4 777777777777 88 1 55 6 2 4 2 1 77 2222 666666666 1 0 77 44 7 6 3 111 22 5 1 77 99999999999999 2 4 7 1 0 6 6 888 0 0 777 4444444 0 8
lowQualScore : . .... ........ . . ................................................ . .... ..... ..... . .... .. .. .. . ....... . .. .. ........... ... .... . . . ............... . . ...... . ................ .. .. ................ .. . . . .. . . . .... . . ............... . . . . . ......... . . ... . .... .. . . ... .. .... .. .. .. . ... .. . . . ... . ....... . . .. . .. . . . ....... . .... . . .. .... . ............ .. . .. . . . . . .. .... ......... . . .. .. . . . ... .. . . .. .............. . . . . . . . ... . . ... ....... . .
lowQualScore : 0 6666 22222222 0 0 000000000000000000000000000000000000000000000000 7 0000 00000 33333 0 0000 88 55 00 0 0000000 0 88 66 88888888888 000 0000 8 7 2 000000000000000 7 7 555555 0 1111111111111111 22 88 0000000000000000 00 0 0 0 00 0 0 0 0000 0 0 000000000000000 0 0 0 0 0 555555555 0 0 000 2 0000 55 0 0 000 55 4444 00 00 00 7 333 33 3 0 5 555 5 5555555 0 0 55 0 00 0 0 0 0000000 3 3333 3 0 00 5555 0 555555555555 55 0 00 0 5 0 5 0 00 5555 000000000 0 7 00 33 0 0 0 000 00 5 0 00 55555555555555 5 0 3 0 7 7 7 777 7 0 555 2222222 8 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CCT-G-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAAA--TAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAA-TTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTA-AGTAGGGATCAAATTGTCTTTGTTAATA-----ATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TGA-TAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGCCA---CA--ATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCC---TCGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGNTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGGAGGAGTAGATTTAAGTTG--GTTCAGAT-AAT-GCCTCCNCCTGACATGGGTTGGGTTNGGNTCACA-GTTAGGNACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
Reference ( family-1843 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAANATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA--CT-G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAAA--TAGGGNNNNNNNNNNNNNNNNATAGG--GGGAGATTCAAGTTTGTTCAAATCATGACCCCCGGGGGTACGGTGGGGCCACACANTAGGGATCAAAGTGTCTACATNNACATGCAGGTANATAGGGAAAAATCTTTTAAAAT-CTTCT-CTCA-GAACC-AC-GGG--CA-G-AAGGNTAGAAATTTATAT--TGAAAGTTTCC-TGA-TAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGCCA---CA--ATAGGGGATCAAAGTTCTAACATGCAAGCAGA-TATATAAGGGAAAATCTTTTAAAATTCTTCTTCCAAGAACCAC-TGGGGCCCTGAGAAAGTTTCCTGATATA-GTGGAG--AAAGTTTGTTCAAATCATGACCC---CCAGGG-TAATGNTGGGGCCACAATAGGGGATCAAAGTTCTAACATGCAGAAGTAT-GATANGGAGAAANTCTTTNAAAAATCCTTCTCATTGAACCAAAAGAGTGGGTATTTNCNCGAAAGNTTTCCTGA-ATGNAGGGGNAGATTCAAGTTGT-GTTCAGAT-NATNGCCCCCACCTGACATGGGTNNGGTTNGGNCCACACGNTAGGNGCATTNTAAATCCCAAACACTNCTCTCCTTCGTGAAGCAGCTGCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
gi|1 : TTGGTAACATCC----ATTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTT--TC-GTTCA-----AGAA-C-AC-TGT--TC---AATTC--AAACCACAACTT-G-GTACA-AATTATGCTT-----------GGTG---AAGAAGGGGATTCA-AA----GTT----------------A-CCA-GGCCC---CCATCAAAAG--AG-----ATA-TCATG--AAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAA-TTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTA-AGTAGGGATCAAATTGTCTTTGTTAATA-----ATATATAGGGAAAAATCTTTTAAAAT-CTTCT-CTCA-AAACCAAC-AGGGCCA-GAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTGA-TAT-GATGGAGAGTTCAAGGTTTGCTTCCAAACTTCATAACCC--CCGGGAGGTACGAT-GGGCCC---CA--ATAGGGGA-CAAA-TTCTTACAT---AGGAGATTATAAAAGGGAAAATCTTTTGAAAGTCTTCTTCCAAAGACCACGTGGG--CCAGAGAAAGCTTCCTGATATACATG-------AGTTTGTTCAAATC-TGACCC---TCAGGG-TAATG--GGGGCCACAATAAGGGATCAGA--TATTACATGCAGAATTATCGTTATGGAG--ATTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGATATGGA---GTATATTCAAGTTATCGTTTAGATAAATCCCCTCCCTTTGA---GGGTTGGG-TGGGGTCACA-ATTAGGG--AT--TAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---GTG-CTCAG---GTGAGC-----TATGTGG-CCATGGGCCTC-TTGTTTT
gi|11 : aacctatcaaatattttgcatctacgtgatagcctctgaacgttc-AAATTC--AA-CCCCA--C----GAATA-AA----------G--------GGAC---AAG----G--TTCA-AGTCTTGTTCG-AAATGGTGAAGTGA-CCACGACCC---AA-TCAAAGGGGAG-----tgta
gi|12 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTCC-TGA-TAT-AGTGGAGA-TCCAA-GTTTG--TTCAAA--TCATGACCC--CCAGG-GGTA
gi|14 : G-CTCAGAATGTGAGC-----G-TGTGGCCC-TGGGCCTCTTTATTTT
gi|15 : at-AGTTTTATTGA-AA----TAAAG-GG-CTA-TGCCC---CT-TCCAAAGGGAA-----TTAATTGGGGAAAAA-TTAAAGA--TAaataattgtattatcttttgatttttagg
gi|16 : C----GTTTTTAGCTCACCTGAACCGGAGG--------
gi|17 : ataatggttattaagaaataaaagttca----GTTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|19 : tgtcatattttagtgaacaacctcaatgTTTGTTCAAATCATGACATTAATCAGGG-TAATG-TGGGGCCACAA
gi|2 : ATA-GTGGAATTCAAGTTTGTTCAAATCATGACCC---TAGGGGGTAACGATGAGGCCCCAATTAGGGATCAAAGTTTTAACATGCAGA--TAT--ATA--GAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTGAA--GTTTCCTGA--TG-AGGAGTAGATTTAAGTTG--GTTCAGAT-AAT-GCCTCCACCTGACATAGGTTAGATTTAGCTTACA-GT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTGTG-CTCAG---GTGAGCGATGTGATGTGGCCCATGGGCCTC-TTGTTTT
gi|20 : GAACATGCA---GTTTTTAGCTCACCTGAACCGAAGaatagttacaaaatgtttttatttctag
gi|21 : atTTTTTAGCTCACCTGAACCGAAGG--------
gi|22 : ctcaaaccttGC-----GATGTGGCCCATGGGCCTC-TTATTTt
gi|23 : TTTTTAGCTCACCTTAACCGAAGG--------atagttac
gi|24 : ttatTTTTTAGCTCACCTGAACCGAAGG--------ttcaag
gi|25 : actccaataa----GTTTTTAGCTCACCTGAATCGAAGG--------
gi|26 : taa----GTTATTAGCTCACCTGACCCGAAGG--------ttcaa
gi|27 : attaTTTTTAGCTCACCTGAACCAAAGG--------ttca
gi|29 : ttaaaGTAGATTTAAGTTG--GTTCAGAT-AAT-GCCtt
gi|3 : aATCA----GTTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA--CT-G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAAA--TAGGG
gi|4 : tAAAT-TTCTAAAATTCTTCTTCTCAAGAACC-ACTGGA--CACG-AAAGCT-GAAATTTATAC---GAAAGCTTCC-TGAATATAGGGGGAGA-TTCAAG-TTTGTTT--AAA--TCATGGCCC--CCGGG---TATGGTGGGGCCA---CACAATAGGGGATAAA
gi|4 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTC--TGA-TAT-AGTGGAGA---CAAG-TTTGTT--CAAA--TCATGACCC--CCAGG-GGTACatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|5 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaAAC-CTTCTTTCCTTCATGAA-CAG--GCGACTCAG---GTGATA-----ATTGTGGCCTATGGGTCTC-TTGTTTc
gi|6 : gatttatactcgtagtgtcccaaatgttttACTCT--ACATTTT-----ACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCT-AA-CAACATCCC-GCGTACT-AAGAATTTTCT-ATAGCGTCTGGTA---TAG----GGAT-CACAGGTTTGTTCC-AA----------GATCCA-GGCCCGCCCT-TCAAAGGGCAGACTAAATAATCACgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|7 : TTGGGAAAACCCTCAAATTTTTAGCTCACCTGAACCGAAGG--------a
gi|8 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatTTAAAA--TCATGAACCATCTGA----TACAGTGGGGCCAGTACA--GTAGGGGATCAAAGTTCT-ACATGCAAGTAGA-T-----AGGGAAAATCTTTT-AAATTCTTCTT--AAGAACCAC-TGGGGGCCt
gi|9 : ttgGAA-CT---TGG--GCC-AGTTTTCAAA-TCAAG--CTTG-GCACATAATCATCTTTTCG--------GGTGGTTAAGA---GGAATCT-AGTTTTCTTCAGAA----TGAAG-GG-GCA-ATCCC---TC-CTAAAGAGAAG-----A-AA-------AAAG-ACACAAA--TAcaggggggtattctagtttctt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|13 ): TAAGTTGGTTCAGACCTAATTGCCTAGGAACCAACATGGTTAGAATTTTAGTCCCACAGTGGTACCAACTCAAAA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111 11111111 1 1 1111111111111 22 3333 22222 33333 1 1111 11 11 11 222222 4444444444444444444444444 222222222222222 111111 1111111111111111 11 11 1 1 1 1 1 111111 1 1 22222 11 1 1 111 11 1111 11 11 1111 3333333 1 1 222 333333 1 11 2222 1 3333333 222 1 22 11 11 2222 11 2222 55555 11 11 22 33333333333333333 33333 33 1111 222 1 111 2222222
lowQualScore : 5555 33333333 5 5 7777777777777 00 0000 33333 33333 0 6666 33 00 99 8 444444 8 88 44 5555555555555555555555555 0 6 3 222222222222222 6 6 555555 1 9999999999999999 00 33 5 5 5 5 5 999999 0 0 222 3 66666 22 0 0 444 77 3333 11 11 2222 6 0000000 7 5 5 000 1 000000 5 1 77 3333 5 2222222 7 333 0 3 0 00 1 88 1 1 88 8888 88 22 1 1 1 1 4444 11111 33 33 33 55555555555555555 0 11111 1 1 00 1 5555 2 1 7 6 555 0 0 777 4444444 0 8
lowQualScore : .... ........ . . ............. .. .... ..... ..... . .... .. .. .. . ...... . .. .. ......................... . . . ............... . . ...... . ................ .. .. . . . . . ...... . . ... . ..... .. . . ... .. .... .. .. .... . ....... . . . ... . ...... . . .. .... . ....... . ... . . . .. . .. . . .. .... .. .. . . . . .... ..... .. .. .. ................. . ..... . . .. . .... . . . . ... . . ... ....... . .
lowQualScore : 6666 22222222 5 0 5555555555555 00 0000 00000 33333 0 0000 88 55 00 0 222222 0 88 66 4444444444444444444444444 8 7 2 000000000000000 7 7 555555 0 1111111111111111 22 88 0 5 5 0 5 000000 0 0 888 2 88888 55 0 0 000 55 4444 00 00 6666 7 7777777 3 0 5 555 0 555555 0 0 55 5555 0 5555555 3 333 7 3 7 77 0 00 0 0 55 5555 55 00 0 0 0 0 0000 55555 88 88 88 00000000000000000 7 33333 0 0 77 0 7777 5 0 3 7 000 7 0 555 2222222 8 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTTG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATAT-GAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
Reference ( family-1843 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CCTG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGNTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCNCCTGACATGGGTTGGG---TTNGGNTCACAGTTAGGNACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
gi|1 : TTGGTAACATCC----ATTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTT--TC-GTTCA-----AGAA-C-AC-TGT--TC---AATTC--AAACCACAACTTG-GTACA-AATTATGCTT-----------GGTG---AAGAAGGGGATTCA-AA----GTT----------------A-CCA-GGCCC---CCATCAAAAG--AG-----ATA-TCATG--AAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTTTAAAA-TCTTC-TCTCAA-AACCAAC-AGGGCCA-GAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTG-ATAT-GATGGAGAGTTCAAGGTTTGCTTCCAAACTTCATAACCC--CCGGGAGGTACGAT-GGGC--CC---CAATAGGGGA-CAAA-TTCTTACAT---AGGAGATTATAAAAGGGAAAATCTTTTGAAAGTCTTCTTCCAAAGACCACGT--GGGCCAGAGAAAGCTTCCTGATATACATG-------AGTTTGTTCAAATC-TGACCCT---CAGGG-TAATG--GGGGCCACAATAAGGGATCAGA--TATTACATGCAGAATTATCGTTATGGAG--ATTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGATAT---GGAGTATATTCAAGTTATCGTTTAGA--TAAATCCCCT-----CCCTTTGA---GGGTTGGG----TGGGGTCACAATTAGGGA----TTAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---GTG-CTCAG---GTGAGC-----TATGTGG-CCATGGGCCTC-TTGTTTT
gi|11 : aacctatcaaatattttgcatctacgtgatagcctctgaacgttc-AAATTC--AA-CCCCA-C----GAATA-AA----------G--------GG------ACA---AGGTTCA-AGTCTTGTTCG-AAATGGTGAAGTGA-CCACGACCC---AA-TCAAAGGGGAG-----tgta
gi|12 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTCC-TG-ATAT-AGTGGAGA-TCCAA-GTTTG--TTCAAA--TCATGACCC--CCAGG-GGTA
gi|13 : TAAGTTG--GTTCAGACCTAAT-TGCCTAGGAACCA----ACAT-GGTTAGAATTTTAGTCCCACAGT--GGTAC
gi|14 : G-CTCAGAATGTGAGC-----G-TGTGGCCC-TGGGCCTCTTTATTTTcaactcaaaa
gi|15 : at-AGTTTTATTGA-AA----TAAAG-GG-CTA-TGCCC---CT-TCCAAAGGGAA-----TTAATTGGGGAAAAA-TTAAAG--ATAaataattgtattatcttttgatttttagg
gi|16 : C----GTTTTTAGCTCACCTGAACCGGAGG--------
gi|17 : ataatggttattaagaaataaaagttca----GTTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|19 : tgtcatattttagtgaacaacctcaatgTTTGTTCAAATCATGACATTAATCAGGG-TAATG-TGGGGCCACAA
gi|2 : ATA-GTGGAATTCAAGTTTGTTCAAATCATGACCCT---AGGGGGTAACGATGAGGCCCCAATTAGGGATCAAAGTTTTAACATGCAGA--TAT----ATAGAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTGAA--GTTTCCTGAT---GAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATAGGTTAGA---TTTAGCTTACAGT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTGTG-CTCAG---GTGAGCGATGTGATGTGGCCCATGGGCCTC-TTGTTTT
gi|20 : GAACATGCA---GTTTTTAGCTCACCTGAACCGAAGaatagttacaaaatgtttttatttctag
gi|21 : atTTTTTAGCTCACCTGAACCGAAGG--------
gi|22 : ctcaaaccttGC-----GATGTGGCCCATGGGCCTC-TTATTTt
gi|23 : TTTTTAGCTCACCTTAACCGAAGG--------atagttac
gi|24 : ttatTTTTTAGCTCACCTGAACCGAAGG--------ttcaag
gi|25 : actccaataa----GTTTTTAGCTCACCTGAATCGAAGG--------
gi|26 : taa----GTTATTAGCTCACCTGACCCGAAGG--------ttcaa
gi|27 : attaTTTTTAGCTCACCTGAACCAAAGG--------ttca
gi|29 : ttaaaAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCtt
gi|3 : ATCA----GTTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-C-TG-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGG
gi|4 : tAAAT-TTCTAAAATTCTTCTTCTCAAGAACC-ACTGGA--CACG-AAAGCT-GAAATTTATA---CGAAAGCTTCC-TGAATATAGGGGGAGA-TTCAA-GTTTGTTT--AAA--TCATGGCCC--CC--G-GGTATGGTGGGGCCACA---CAATAGGGGATAAA
gi|4 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTC--TG-ATAT-AGTGGAGA---CAAG-TTTGTT--CAAA--TCATGACCC--CCAGG-GGTACatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|5 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaAAC-CTTCTTTCCTTCATGAA-CAG--GCGACTCAG---GTGATA-----ATTGTGGCCTATGGGTCTC-TTGTTTc
gi|6 : gatttatactcgtagtgtcccaaatgttttACTCT--ACATTTT-----ACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCT-AA-CAACATCCCGCGTACT-AAGAATTTTCT-ATAGCGTCTGGTA---TAG----GGAT-CACAGGTTTGTTCC-AA----------GATCCA-GGCCCGCCCT-TCAAAGGGCAGACTAAATAATCACgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|7 : TTGGGAAAACCCTCAAATTTTTAGCTCACCTGAACCGAAGG--------a
gi|8 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatTTAAAA--TCATGAACCATCTGA----TACAGTGGGGC--CAGTACAGTAGGGGATCAAAGTTC-TACATGCAAGTAGAT------AGGGAAAATCTTTT-AAATTCTTCTT--AAGAACCAC-TGGGGGCCt
gi|9 : ttgGAA-CT---TGG--GCC-AGTTTTCAAA-TCAAG-CTTG-GCACATAATCATCTTTTCG--------GGTGGTTAAGA---GGAATCT-AGTTTTCTTCAGAA----TGAAG-GG-GCA-ATCCC---TC-CTAAAGAGAAG-----A-AA-------AAAG-ACACAA--ATAcaggggggtattctagtttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111 11111111 1 1 1111111111111 22 3333 22222 33333 1 1111 11 11 11 222222 4444444444444444444444444 222222222222222 111111 1111111111111111 11 11 1 1 1 1 1 111111 1 1 22222 11 1 1 111 11 1111 11 11 1111 3333333 1 1 222 333333 1 11 2222 1 3333333 222 1 22 11 11 2222 11 2222 3333 11 11 22 33333 222222222 3333 11 1111 222 1 111 2222222
lowQualScore : 5555 33333333 5 5 7777777777777 00 0000 33333 33333 0 6666 33 00 99 8 111111 8 88 44 5555555555555555555555555 0 6 3 222222222222222 6 6 555555 1 9999999999999999 00 33 5 5 5 5 5 999999 0 0 222 3 66666 22 0 0 444 77 3333 11 11 2222 6 0000000 7 5 5 000 1 000000 5 1 77 3333 5 2222222 7 333 0 3 0 00 1 88 1 1 88 3333 88 22 1 1 1 1 4444 6666 33 33 33 33333 000000000 0000 1 88 5555 2 1 7 6 555 0 0 777 4444444 0 8
lowQualScore : .... ........ . . ............. .. .... ..... ..... . .... .. .. .. . ...... . .. .. ......................... . . . ............... . . ...... . ................ .. .. . . . . . ...... . . ... . ..... .. . . ... .. .... .. .. .... . ....... . . . ... . ...... . . .. .... . ....... . ... . . . .. . .. . . .. .... .. .. . . . . .... .... .. .. .. ..... ......... .... . .. .... . . . . ... . . ... ....... . .
lowQualScore : 6666 22222222 5 0 5555555555555 00 0000 00000 33333 0 0000 88 55 00 0 444444 0 88 66 4444444444444444444444444 8 7 2 000000000000000 7 7 555555 0 1111111111111111 22 88 0 5 5 0 5 000000 0 0 888 2 88888 55 0 0 000 55 4444 00 00 6666 7 7777777 3 0 5 555 0 555555 0 0 55 5555 0 5555555 3 333 7 3 7 77 0 00 0 0 55 5555 55 00 0 0 0 0 0000 5555 88 88 88 33333 777777777 7777 0 33 7777 5 0 3 7 000 7 0 555 2222222 8 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTCG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
Reference ( family-1843 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTTG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
gi|1 : TTGGTAACATCC----ATTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTT--TC-GTTCA-----AGAA-C-AC-TGT--TC---AATTC--AAACCACAACTTG-GTACA-AATTATGCTT-----------GGTG---AAGAAGGGGATTCA-AA----GTT----------------A-CCA-GGCCC---CCATCAAAAG--AG-----ATA-TCATG--AAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTTTAAAA-TCTTC-TCTCAA-AACCAAC-AGGGCCA-GAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTG-ATAT-GATGGAGAGTTCAAGGTTTGCTTCCAAACTTCATAACCC--CCGGGAGGTACGAT-GGGC--CC---CAATAGGGGA-CAAA-TTCTTACAT---AGGAGATTATAAAAGGGAAAATCTTTTGAAAGTCTTCTTCCAAAGACCACGT--GGGCCAGAGAAAGCTTCCTGATATACATG-------AGTTTGTTCAAATC-TGACCCT---CAGGG-TAATG--GGGGCCACAATAAGGGATCAGA--TATTACATGCAGAATTATCGTTATGGAG--ATTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGATAT--GGAGTATATTCAAGTTATCGTTTAGA--TAAATCCCCT-----CCCTTTGA---GGGTTGGG----TGGGGTCACAATTAGGGA----TTAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---GTG-CTCAG---GTGAGC-----TATGTGG-CCATGGGCCTC-TTGTTTT
gi|11 : aacctatcaaatattttgcatctacgtgatagcctctgaacgttc-AAATTC--AA-CCCCA-C----GAATA-AA----------G--------GG------ACA---AGGTTCA-AGTCTTGTTCG-AAATGGTGAAGTGA-CCACGACCC---AA-TCAAAGGGGAG-----tgta
gi|12 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTCC-TG-ATAT-AGTGGAGA-TCCAA-GTTTG--TTCAAA--TCATGACCC--CCAGG-GGTA
gi|13 : TAAGTTG--GTTCAGACCTAAT-TGCCTAGGAACCA----ACAT-GGTTAGAATTTTAGTCCCACAGT--GGTAC
gi|14 : G-CTCAGAATGTGAGC-----G-TGTGGCCC-TGGGCCTCTTTATTTTcaactcaaaa
gi|15 : at-AGTTTTATTGA-AA----TAAAG-GG-CTA-TGCCC---CT-TCCAAAGGGAA-----TTAATTGGGGAAAAA-TTAAAG--ATAaataattgtattatcttttgatttttagg
gi|16 : C----GTTTTTAGCTCACCTGAACCGGAGG--------
gi|17 : ataatggttattaagaaataaaagttca----GTTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|19 : tgtcatattttagtgaacaacctcaatgTTTGTTCAAATCATGACATTAATCAGGG-TAATG-TGGGGCCACAA
gi|2 : ATA-GTGGAATTCAAGTTTGTTCAAATCATGACCCT---AGGGGGTAACGATGAGGCCCCAATTAGGGATCAAAGTTTTAACATGCAGA--TAT----ATAGAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTGAA--GTTTCCTGAT--GAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATAGGTTAGA---TTTAGCTTACAGT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTGTG-CTCAG---GTGAGCGATGTGATGTGGCCCATGGGCCTC-TTGTTTT
gi|20 : GAACATGCA---GTTTTTAGCTCACCTGAACCGAAGaatagttacaaaatgtttttatttctag
gi|21 : atTTTTTAGCTCACCTGAACCGAAGG--------
gi|22 : ctcaaaccttGC-----GATGTGGCCCATGGGCCTC-TTATTTt
gi|23 : TTTTTAGCTCACCTTAACCGAAGG--------atagttac
gi|24 : ttatTTTTTAGCTCACCTGAACCGAAGG--------ttcaag
gi|25 : actccaataa----GTTTTTAGCTCACCTGAATCGAAGG--------
gi|26 : taa----GTTATTAGCTCACCTGACCCGAAGG--------ttcaa
gi|27 : attaTTTTTAGCTCACCTGAACCAAAGG--------ttca
gi|29 : ttaaaAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCtt
gi|3 : ATCA----GTTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CT-G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGG
gi|4 : tAAAT-TTCTAAAATTCTTCTTCTCAAGAACC-ACTGGA--CACG-AAAGCT-GAAATTTATA---CGAAAGCTTCC-TGAATATAGGGGGAGA-TTCAA-GTTTGTTT--AAA--TCATGGCCC--CC--G-GGTATGGTGGGGCCACA---CAATAGGGGATAAA
gi|4 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTC--TG-ATAT-AGTGGAGA---CAAG-TTTGTT--CAAA--TCATGACCC--CCAGG-GGTACatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|5 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaAAC-CTTCTTTCCTTCATGAA-CAG--GCGACTCAG---GTGATA-----ATTGTGGCCTATGGGTCTC-TTGTTTc
gi|6 : gatttatactcgtagtgtcccaaatgttttACTCT--ACATTTT-----ACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCT-AA-CAACATCCCGCGTACT-AAGAATTTTCT-ATAGCGTCTGGTA---TAG----GGAT-CACAGGTTTGTTCC-AA----------GATCCA-GGCCCGCCCT-TCAAAGGGCAGACTAAATAATCACgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|7 : TTGGGAAAACCCTCAAATTTTTAGCTCACCTGAACCGAAGG--------a
gi|8 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatTTAAAA--TCATGAACCATCTGA----TACAGTGGGGC--CAGTACAGTAGGGGATCAAAGTTC-TACATGCAAGTAGAT------AGGGAAAATCTTTT-AAATTCTTCTT--AAGAACCAC-TGGGGGCCt
gi|9 : ttgGAA-CT---TGG--GCC-AGTTTTCAAA-TCAAG-CTTG-GCACATAATCATCTTTTCG--------GGTGGTTAAGA---GGAATCT-AGTTTTCTTCAGAA----TGAAG-GG-GCA-ATCCC---TC-CTAAAGAGAAG-----A-AA-------AAAG-ACACAA--ATAcaggggggtattctagtttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111 11111111 1 1 1111111111111 22 3333 22222 33333 1 1111 11 11 11 222222 4444444444444444444444444 222222222222222 111111 1111111111111111 11 11 1 1 1 1 1 111111 1 1 22222 11 1 1 111 11 1111 11 11 1111 3333333 1 1 222 333333 1 11 2222 1 3333333 222 1 22 11 11 2222 11 2222 3333 11 11 22 33333 222222222 3333 11 1111 222 1 111 2222222
lowQualScore : 5555 33333333 5 5 7777777777777 00 0000 33333 33333 0 6666 33 00 99 8 444444 8 88 44 5555555555555555555555555 0 6 3 222222222222222 6 6 555555 1 9999999999999999 00 33 5 5 5 5 5 999999 0 0 222 3 66666 22 0 0 444 77 3333 11 11 2222 6 0000000 7 5 5 000 1 000000 5 1 77 3333 5 2222222 7 333 0 3 0 00 1 88 1 1 88 3333 88 22 1 1 1 1 4444 6666 33 33 33 33333 000000000 0000 1 88 5555 2 1 7 6 555 0 0 777 4444444 0 8
lowQualScore : .... ........ . . ............. .. .... ..... ..... . .... .. .. .. . ...... . .. .. ......................... . . . ............... . . ...... . ................ .. .. . . . . . ...... . . ... . ..... .. . . ... .. .... .. .. .... . ....... . . . ... . ...... . . .. .... . ....... . ... . . . .. . .. . . .. .... .. .. . . . . .... .... .. .. .. ..... ......... .... . .. .... . . . . ... . . ... ....... . .
lowQualScore : 6666 22222222 5 0 5555555555555 00 0000 00000 33333 0 0000 88 55 00 0 222222 0 88 66 4444444444444444444444444 8 7 2 000000000000000 7 7 555555 0 1111111111111111 22 88 0 5 5 0 5 000000 0 0 888 2 88888 55 0 0 000 55 4444 00 00 6666 7 7777777 3 0 5 555 0 555555 0 0 55 5555 0 5555555 3 333 7 3 7 77 0 00 0 0 55 5555 55 00 0 0 0 0 0000 5555 88 88 88 33333 777777777 7777 0 33 7777 5 0 3 7 000 7 0 555 2222222 8 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTCG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
Reference ( family-1843 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTCG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
gi|1 : TTGGTAACATCC----ATTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTT--TC-GTTCA-----AGAA-C-AC-TGT--TC---AATTC--AAACCACAACTTG-GTACA-AATTATGCTT-----------GGTG---AAGAAGGGGATTCA-AA----GTT----------------A-CCA-GGCCC---CCATCAAAAG--AG-----ATA-TCATG--AAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTTTAAAA-TCTTC-TCTCAA-AACCAAC-AGGGCCA-GAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTG-ATAT-GATGGAGAGTTCAAGGTTTGCTTCCAAACTTCATAACCC--CCGGGAGGTACGAT-GGGC--CC---CAATAGGGGA-CAAA-TTCTTACAT---AGGAGATTATAAAAGGGAAAATCTTTTGAAAGTCTTCTTCCAAAGACCACGT--GGGCCAGAGAAAGCTTCCTGATATACATG-------AGTTTGTTCAAATC-TGACCCT---CAGGG-TAATG--GGGGCCACAATAAGGGATCAGA--TATTACATGCAGAATTATCGTTATGGAG--ATTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGATAT--GGAGTATATTCAAGTTATCGTTTAGA--TAAATCCCCT-----CCCTTTGA---GGGTTGGG----TGGGGTCACAATTAGGGA----TTAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---GTG-CTCAG---GTGAGC-----TATGTGG-CCATGGGCCTC-TTGTTTT
gi|11 : aacctatcaaatattttgcatctacgtgatagcctctgaacgttc-AAATTC--AA-CCCCA-C----GAATA-AA----------G--------GG------ACA---AGGTTCA-AGTCTTGTTCG-AAATGGTGAAGTGA-CCACGACCC---AA-TCAAAGGGGAG-----tgta
gi|12 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTCC-TG-ATAT-AGTGGAGA-TCCAA-GTTTG--TTCAAA--TCATGACCC--CCAGG-GGTA
gi|13 : TAAGTTG--GTTCAGACCTAAT-TGCCTAGGAACCA----ACAT-GGTTAGAATTTTAGTCCCACAGT--GGTAC
gi|14 : G-CTCAGAATGTGAGC-----G-TGTGGCCC-TGGGCCTCTTTATTTTcaactcaaaa
gi|15 : at-AGTTTTATTGA-AA----TAAAG-GG-CTA-TGCCC---CT-TCCAAAGGGAA-----TTAATTGGGGAAAAA-TTAAAG--ATAaataattgtattatcttttgatttttagg
gi|16 : C----GTTTTTAGCTCACCTGAACCGGAGG--------
gi|17 : ataatggttattaagaaataaaagttca----GTTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|19 : tgtcatattttagtgaacaacctcaatgTTTGTTCAAATCATGACATTAATCAGGG-TAATG-TGGGGCCACAA
gi|2 : ATA-GTGGAATTCAAGTTTGTTCAAATCATGACCCT---AGGGGGTAACGATGAGGCCCCAATTAGGGATCAAAGTTTTAACATGCAGA--TAT----ATAGAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTGAA--GTTTCCTGAT--GAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATAGGTTAGA---TTTAGCTTACAGT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTGTG-CTCAG---GTGAGCGATGTGATGTGGCCCATGGGCCTC-TTGTTTT
gi|20 : GAACATGCA---GTTTTTAGCTCACCTGAACCGAAGaatagttacaaaatgtttttatttctag
gi|21 : atTTTTTAGCTCACCTGAACCGAAGG--------
gi|22 : ctcaaaccttGC-----GATGTGGCCCATGGGCCTC-TTATTTt
gi|23 : TTTTTAGCTCACCTTAACCGAAGG--------atagttac
gi|24 : ttatTTTTTAGCTCACCTGAACCGAAGG--------ttcaag
gi|25 : actccaataa----GTTTTTAGCTCACCTGAATCGAAGG--------
gi|26 : taa----GTTATTAGCTCACCTGACCCGAAGG--------ttcaa
gi|27 : attaTTTTTAGCTCACCTGAACCAAAGG--------ttca
gi|29 : ttaaaAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCtt
gi|3 : ATCA----GTTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CT-G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGG
gi|4 : tAAAT-TTCTAAAATTCTTCTTCTCAAGAACC-ACTGGA--CACG-AAAGCT-GAAATTTATA---CGAAAGCTTCC-TGAATATAGGGGGAGA-TTCAA-GTTTGTTT--AAA--TCATGGCCC--CC--G-GGTATGGTGGGGCCACA---CAATAGGGGATAAA
gi|4 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTC--TG-ATAT-AGTGGAGA---CAAG-TTTGTT--CAAA--TCATGACCC--CCAGG-GGTACatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|5 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaAAC-CTTCTTTCCTTCATGAA-CAG--GCGACTCAG---GTGATA-----ATTGTGGCCTATGGGTCTC-TTGTTTc
gi|6 : gatttatactcgtagtgtcccaaatgttttACTCT--ACATTTT-----ACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCT-AA-CAACATCCCGCGTACT-AAGAATTTTCT-ATAGCGTCTGGTA---TAG----GGAT-CACAGGTTTGTTCC-AA----------GATCCA-GGCCCGCCCT-TCAAAGGGCAGACTAAATAATCACgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|7 : TTGGGAAAACCCTCAAATTTTTAGCTCACCTGAACCGAAGG--------a
gi|8 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatTTAAAA--TCATGAACCATCTGA----TACAGTGGGGC--CAGTACAGTAGGGGATCAAAGTTC-TACATGCAAGTAGAT------AGGGAAAATCTTTT-AAATTCTTCTT--AAGAACCAC-TGGGGGCCt
gi|9 : ttgGAA-CT---TGG--GCC-AGTTTTCAAA-TCAAG-CTTG-GCACATAATCATCTTTTCG--------GGTGGTTAAGA---GGAATCT-AGTTTTCTTCAGAA----TGAAG-GG-GCA-ATCCC---TC-CTAAAGAGAAG-----A-AA-------AAAG-ACACAA--ATAcaggggggtattctagtttctt
blockSeqs : TCAA TTCAAGTG . . NNNNNNNNNNNNC TC C ATCTC TCGAC A CACA AG CT CA . TCCCGC T TC CC TATAGCGTCTGGTATAG C T CGAAATGGTGAAGT T C GCCCT G TTAATTGGGGA T . . T T G . TGGA C . TTT A TT C A A TC G TTT . AT AGG G CAGTA T G . GCA T . . T . TGG . GAATTCA A AAT G AT T GT T A . . AA AA G A G T GT GA . CC T AGGAA CCTGACATA ATTT A . CATT C A A G GCT A AAT GATGTGA T
blockSeqs : A . . . CT . . CAC . C T . CTTG . GA TT TCGGGTGGTTAAGA . T CAGAATGAAG . . AA G ATAATCGCG G . . . AGC A CG C . . TT G TT . . AGG G CACA T A . . T . . . . ACAT T T . . . G . . GA .
blockSeqs : . . . T . C . . CTG . TC CT TGGGTGAAG . T GAAATAAAG . . CT G AAA A . . . TTT . TT . . . . G TT . . GA . . . . . AT .
blockSeqs : . . . . C . . . GGGACA . G CAAATGAAG . . CT C . . G G .
blockSeqs : . . . T CCAA . . TC A
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : CCG*** TGGGTGAAG**************** CGAATGAAG****** CT**** ** GG**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA-CTCG-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTCA-AA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGGG-GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACACCG---GTACA-AATCATCCTTTGGGTGAAG----------------GGATTCA-AGTTTTGTTCGAATGAAG------GA-CCA-GGCCCCT----TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCC--CCGG--GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111 11111111 1 1 1111111111111 22 3333 22222 33333 1 1111 11 11 11 33333333 44444444444 111 2222 222222222222222 111111 1111111111111111 11 11 1 1 1 1 1 111111 1 1 22222 11 1 1 111 11 1111 11 22222 3333333 1 1 222 333333 1 11 2222 1 3333333 222 1 22 11 11 2222 11 2222 3333 11 11 22 33333 222222222 3333 11 1111 222 1 111 2222222
lowQualScore : 5555 33333333 5 5 7777777777777 00 0000 33333 33333 0 6666 33 00 99 8 44444444 8 88 44 00000000000 444 5555 0 6 3 444444444444444 6 6 555555 1 9999999999999999 00 33 5 5 5 5 5 999999 0 0 222 3 66666 22 0 0 444 77 3333 11 77777 6 0000000 7 5 5 000 1 000000 5 1 77 3333 5 2222222 7 333 0 3 0 00 1 88 1 1 88 3333 88 22 1 1 1 1 4444 6666 33 33 33 33333 000000000 0000 1 88 5555 2 1 7 6 555 0 0 777 4444444 0 8
lowQualScore : .... ........ . . ............. .. .... ..... ..... . .... .. .. .. . ........ . .. .. ........... ... .... . . . ............... . . ...... . ................ .. .. . . . . . ...... . . ... . ..... .. . . ... .. .... .. ..... . ....... . . . ... . ...... . . .. .... . ....... . ... . . . .. . .. . . .. .... .. .. . . . . .... .... .. .. .. ..... ......... .... . .. .... . . . . ... . . ... ....... . .
lowQualScore : 6666 22222222 5 0 5555555555555 00 0000 00000 33333 0 0000 88 55 00 0 44444444 0 88 66 88888888888 000 0000 8 7 2 222222222222222 7 7 555555 0 1111111111111111 22 88 0 5 5 0 5 000000 0 0 888 2 88888 55 0 0 000 55 4444 00 00000 7 7777777 3 0 5 555 0 555555 0 0 55 5555 0 5555555 3 333 7 3 7 77 0 00 0 0 55 5555 55 00 0 0 0 0 0000 5555 88 88 88 33333 777777777 7777 0 33 7777 5 0 3 7 000 7 0 555 2222222 8 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA--CCT-G-GTACA-AATCATCCTTT-G--------GGTG---AAGA---GGATTCA-AGTTTTGTTC-GAA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCCCCAGG--GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
Reference ( family-1843 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAACATCC----GTTTTTAGCTCACCTGAACCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT------------CGTTAACTTT-CACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA--CC--G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTC-GAA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTCTAAAATTCTTCTTCTCAAGAACCAACTGGGGCCA-G-AANNTTAGAAATTTATAT--TGAAAGCTTCC-TG-ATAT-GGTGGAGA-TTCAAGGTTTGTTTTCAAA--TCATGACCCCC-GG--GGTACGGTGGGGC--CA---CAATAGGGGATCAAAGTTCTTACATGCAAGNAGATTATAAAAGGGAAAATCTTTTGAAANTCTTCTTCCAAGGACCACGTGGGGGCCAGAGAAAGCTTCCTGATATACGTGGAATTCAAGTTTGTTCAAATCATGACCCT---CGGGG-TAACG-TGGGGCCACAATNAGGGATCAGAGTTNTNACATGCAGAATTATCGTTATGGAGAAATTCTTTNNAGAATCTTTCTCATTNGACCAGANGAGTGNGTATTTNCCTGAAAAGTCTCCTGATATGAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATGGGTTAGA---TTNGGCTCACAGT--GGTACATTCTAAGTCGCNAACACTGCTCTTCTTAGTGAAGCAG--GCG-CTCAG---GTGAGC-----GATGTGGCCCATGGGCCTC-TTGTTTT
gi|1 : TTGGTAACATCC----ATTTTTAGCTCACCTGAAGCGAAGG--------AGCTTTTACTGCATCGCCTTGTTGGGTCTGATCCGTCTGTCTCGTCCTGTCT-------------GTTAACTTT-CACATTTTTTACGGCTT--TC-GTTCA-----AGAA-C-AC-TGT--TC---AATTC--AAACCACA--ACTTG-GTACA-AATTATGCTT-----------GGTG---AAGAAGGGGATTCA-AA----GTT----------------A-CCA-GGCCC---CCATCAAAAG--AG-----ATA-TCATG--AAAATGCAAAAAAATAGGGTGGTGTCATTTGCATCATAGGTGGGGAGATTCAATTTGTTCAAGTCATGACCCCCAGGGACACGATTGGACCCTAAGTAGGGATCAAATTGTCTTTGTTAATAATATATAGGGAAAAATCTTTTAAAA-TCTTC-TCTCAA-AACCAAC-AGGGCCA-GAAAAGGTAGAAATTTATATACTGAAAGCTTCCTTG-ATAT-GATGGAGAGTTCAAGGTTTGCTTCCAAACTTCATAACCCCC-GGGAGGTACGAT-GGGC--CC---CAATAGGGGA-CAAA-TTCTTACAT---AGGAGATTATAAAAGGGAAAATCTTTTGAAAGTCTTCTTCCAAAGACCACGT--GGGCCAGAGAAAGCTTCCTGATATACATG-------AGTTTGTTCAAATC-TGACCCT---CAGGG-TAATG--GGGGCCACAATAAGGGATCAGA--TATTACATGCAGAATTATCGTTATGGAG--ATTCTTTTTAGAATCTTTCTCATTTGACCAGATGAGTGTATATTTACCTGAAAAG-CTCCTGATAT--GGAGTATATTCAAGTTATCGTTTAGA--TAAATCCCCT-----CCCTTTGA---GGGTTGGG----TGGGGTCACAATTAGGGA----TTAAGTTGCTACTACTGCTCTTCTTAGTGTAGCA---GTG-CTCAG---GTGAGC-----TATGTGG-CCATGGGCCTC-TTGTTTT
gi|11 : aacctatcaaatattttgcatctacgtgatagcctctgaacgttc-AAATTC--AA-CCCCA--C-----GAATA-AA----------G--------GGAC---AAG----G--TTCA-AGTCTTGTTC-GAAATGGTGAAGTGA-CCACGACCC---AA-TCAAAGGGGAG-----tgta
gi|12 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTCC-TG-ATAT-AGTGGAGA-TCCAA-GTTTG--TTCAAA--TCATGACCCCCAGG--GGTA
gi|13 : TAAGTTG--GTTCAGACCTAAT-TGCCTAGGAACCA----ACAT-GGTTAGAATTTTAGTCCCACAGT--GGTAC
gi|14 : G-CTCAGAATGTGAGC-----G-TGTGGCCC-TGGGCCTCTTTATTTTcaactcaaaa
gi|15 : at-AGTTTTATTG-AAA----TAAAG-GG-CTA-TGCCC---CT-TCCAAAGGGAA-----TTAATTGGGGAAAAA-TTAAAG--ATAaataattgtattatcttttgatttttagg
gi|16 : C----GTTTTTAGCTCACCTGAACCGGAGG--------
gi|17 : ataatggttattaagaaataaaagttca----GTTTTTAGCTCACCTGAACCGAAGG--------ttca
gi|19 : tgtcatattttagtgaacaacctcaatgTTTGTTCAAATCATGACATTAATCAGGG-TAATG-TGGGGCCACAA
gi|2 : ATA-GTGGAATTCAAGTTTGTTCAAATCATGACCCT---AGGGGGTAACGATGAGGCCCCAATTAGGGATCAAAGTTTTAACATGCAGA--TAT----ATAGAGAAATTCTTTAAAAAATCTTTTTCATTGAACCAAAAGAGTGGGTATTTTCCTGAA--GTTTCCTGAT--GAGGAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCT-----CCACCTGACATAGGTTAGA---TTTAGCTTACAGT--GGTACATTCTAAATCCCAAACACTGCTCTTCTTAGTGAAGCAGCTGTG-CTCAG---GTGAGCGATGTGATGTGGCCCATGGGCCTC-TTGTTTT
gi|20 : GAACATGCA---GTTTTTAGCTCACCTGAACCGAAGaatagttacaaaatgtttttatttctag
gi|21 : atTTTTTAGCTCACCTGAACCGAAGG--------
gi|22 : ctcaaaccttGC-----GATGTGGCCCATGGGCCTC-TTATTTt
gi|23 : TTTTTAGCTCACCTTAACCGAAGG--------atagttac
gi|24 : ttatTTTTTAGCTCACCTGAACCGAAGG--------ttcaag
gi|25 : actccaataa----GTTTTTAGCTCACCTGAATCGAAGG--------
gi|26 : taa----GTTATTAGCTCACCTGACCCGAAGG--------ttcaa
gi|27 : attaTTTTTAGCTCACCTGAACCAAAGG--------ttca
gi|29 : ttaaaAGTAGATTTAAGTTG--GTTCAGA--TAA--TGCCtt
gi|3 : ATCA----GTTTTTAGCTCACCTGAACCGAAGGTTCAAGTGAGCTTTT-CTG-ATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAACTTTTCACATTTT---CGACTT--CT-TCTCA-----AGAA-CCAC-TGG--GCC-AAATTC--AA-CCACA--CT--G-GTACA-AATCATCCTTT-G--------GGTG---AAG----GGATTCA-AGTTTTGTTC-AAA----TGAAG-GA-CCA-GGCCC---CT-TCAAAGGGGAG-----ATAATCGCG--AAAA-GCAAAA--ATAGGG
gi|4 : tAAAT-TTCTAAAATTCTTCTTCTCAAGAACC-ACTGGA--CACG-AAAGCT-GAAATTTATA---CGAAAGCTTCC-TGAATATAGGGGGAGA-TTCAA-GTTTGTTT--AAA--TCATGGCCCCC--G--GGTATGGTGGGGCCACA---CAATAGGGGATAAA
gi|4 : A-G-AATTTTAGAAATTTATAT--T-AAAGTTTC--TG-ATAT-AGTGGAGA---CAAG-TTTGTT--CAAA--TCATGACCCCCAGG--GGTACatattaaagtttctgatatagtggagacaagtttgttcaaatcatgacccccaggggtacc
gi|5 : tttatcccctattgtgtggccccaccatacccgggggccatgatttaaacaaacttgaatctccccctatattcaggaagctttcgtataaatttcagctttcgtgtccagtggttcttgagaagaAAC-CTTCTTTCCTTCATGAA-CAG--GCGACTCAG---GTGATA-----ATTGTGGCCTATGGGTCTC-TTGTTTc
gi|6 : gatttatactcgtagtgtcccaaatgttttACTCT--ACATTTT-----ACTTATCTCTCTCATCGACAGAAACCACATAGAGGCCTAAATTCT-AA-CAACATCCC--GCGTACT-AAGAATTTTCT-ATAGCGTCTGGTA---TAG----GGAT-CACAGGTTTGTTC-CAA----------GATCCA-GGCCCGCCCT-TCAAAGGGCAGACTAAATAATCACgaatctaagtttattttaatagaagacaaattttactttcagggaacacctactcaagtacagcagcctta
gi|7 : TTGGGAAAACCCTCAAATTTTTAGCTCACCTGAACCGAAGG--------a
gi|8 : gggcttgaaattaactcatgtccatcagtccatgactggttattatcctggcggactgactgatgtttgtcccaatcagtccgaccagactggtagaatatttttaaactttatgatTTAAAA--TCATGAACCAT-CT--GATACAGTGGGGC--CAGTACAGTAGGGGATCAAAGTTC-TACATGCAAGTAGAT------AGGGAAAATCTTTT-AAATTCTTCTT--AAGAACCAC-TGGGGGCCt
gi|9 : ttgGAA-CT---TGG--GCC-AGTTTTCAAA-TCAAG--CTT-G-GCACATAATCATCTTTTCG--------GGTGGTTAAGA---GGAATCT-AGTTTTCTTCAGAA----TGAAG-GG-GCA-ATCCC---TC-CTAAAGAGAAG-----A-AA-------AAAG-ACACAA--ATAcaggggggtattctagtttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGGCCCATGGGTCTCTTGTTGAAAAAGTGGATTTCAAGCATGAATACAATTTTTCTTTTCAGTCCTAAGGCACGAACAGCAGCCTCA
Unaligned ( gi|18 ): GGCTTGAAATTAACTAATGTTCGTCAGTCCGTGACTGGTTATTATCCTGG
Unaligned ( gi|28 ): TGTTCCGAACACACAAGTCTCATCTCCTTCA