lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111 11111111111111111111111 111111111111111111111111111111
lowQualScore : 1 1 6666 1111111 555555555555555555 555555555555555555555 33 111 444444444444444444444 22222 11 111 44444444 111 222222 11111 333333333333333333 11111111 3333333333333 1 111 2222222222 1 111 44444444444444 66666666666666666666666666666666666666666666666 333333333333333333333 111111 222222222222222 333333333333 11111 2222222222222222 111 2222 33333333 0000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1 1111111 1 111111 111111 111 1111 11 111111 33333333333333333 1 222222 333333 11 11111 222222222222222222222222222222222222222222222222222222 3333 1 11 222222222222 11 111 444444 11 1 11 1 1 222222222 44444444 1 1 1 3 3 1 1 11 222 33 333333333 555555555555555555555 2 5555555 2222 2 1 1 333 22 2222 5555555555 44444 2 2 1 666666666666666 333 222 2 1 1 1 22 66666666666666 2 2 11 99999999999999999999999 2222 33333333 2 111 6666666666666666666666666 1 777777777777777777777 33333333 4 1 22 333 1 2 2 8888888888888 4 2222 4444 1 99999999 1 55 44 666 4 44 55555555 777 55 777 3333 1 33 2 44444 22222 333 2 2 5555555555 2 1 555 2 3333333333333333333333333 22222 22222 33333333333 1 1 444444444444444444444444444444 1 11 222222 55555555555555555555 22 888888888888888 7777777777
lowQualScore : 7 5 6 1111 6 88 8888888 5 444444444444444444 666 3 555 3 3 6 3 333333333333333333333 3 44 555 3 555 3 555 44 777 00 3 3 222 1 0 555 444444444444444444444 999 3 3 66666 11 6 77 55 555 111 3 22222222 3 0 000 99 888888 77777 99 666666666666666666 22222222 4444444444444 7 222 7777777777 3 9 666 77777777777777 6 99999999999999999999999999999999999999999999999 66 4 88 3 444444444444444444444 000000 999999999999999 4 111111111111 55 3 4 4 00000 4 4 4 8888 4 4 99 8888888888888888 55 222 4 0 3 4 4 2222 4 22222222 4 8 4444444444444444444444444444444444444444444444444444444444444444444444444444 4444 5 5 5 5 5 0 7777777 0 333333 444444 444 7777 666 55 000000 5 66666666666666666 0 999 0 1 5 0 3 111111 888888 11 22222 333333333333333333333333333333333333333333333333333333 1111 0 33 5 8 8 999999999999 11 8 7 111 333333 66 0 33 0 0 000000000 88888888 6 3 2 3 77 1 6 7 2 3 3 44 777 77 222222222 7 000000000000000000000 0 0000000 8888 0 5 5 555 77 1111 2222222222 4 66666 0 6 3 555555555555555 0 555 111 7 6 3 2 3 6 7 3 11 0 00000000000000 2 0 0 88 66666666666666666666666 6 8888 22222222 3 777 3333333333333333333333333 3 222222222222222222222 44444444 2 0 5 22 333 5 2 0 3 5555555555555 0 0000 2222 3 5 88888888 5 55 66 111 6 0 66 00000000 000 55 000 3333 2 2 1 3 55 0 88888 88888 2 555 0 0 5555555555 0 5 555 0 9999999999999999999999999 33333 77777 6 77777777777 6 3 111111111111111111111111111111 5 88 111111 88888888888888888888 22 777777777777777 9999999999
lowQualScore : . . . .... . .. ....... . .................. ... . ... . . . . ..................... . .. ... . ... . ... .. ... .. . . ... . . ... ..................... ... . . ..... .. . .. .. ... ... . ........ . . ... .. ...... ..... .. .................. ........ ............. . ... .......... . . ... .............. . ............................................... .. . .. . ..................... ...... ............... . ............ .. . . . ..... . . . .... . . .. ................ .. ... . . . . . .... . ........ . . ............................................................................ .... . . . . . . ....... . ...... ...... ... .... ... .. ...... . ................. . ... . . . . . ...... ...... .. ..... ...................................................... .... . .. . . . ............ .. . . ... ...... .. . .. . . ......... ........ . . . . .. . . . . . . .. ... .. ......... . ..................... . ....... .... . . . ... .. .... .......... . ..... . . . ............... . ... ... . . . . . . . . .. . .............. . . . .. ....................... . .... ........ . ... ......................... . ..................... ........ . . . .. ... . . . . ............. . .... .... . . ........ . .. .. ... . . .. ........ ... .. ... .... . . . . .. . ..... ..... . ... . . .......... . . ... . ......................... ..... ..... . ........... . . .............................. . .. ...... .................... .. ............... ..........
lowQualScore : 0 0 0 0000 0 33 4444444 0 999999999999999999 444 3 888 1 1 2 1 555555555555555555555 1 22 444 1 444 1 444 22 222 44 3 3 555 8 4 888 777777777777777777777 222 3 3 66666 22 7 99 00 111 000 6 55555555 6 9 333 11 000000 00000 77 555555555555555555 66666666 9999999999999 3 444 0000000000 2 3 555 00000000000000 7 77777777777777777777777777777777777777777777777 11 0 66 6 555555555555555555555 555555 888888888888888 8 222222222222 55 6 0 0 88888 0 0 0 5555 0 0 55 2222222222222222 55 555 0 8 1 0 0 0000 0 00000000 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 8888 0 1 0 0 0 0 9999999 0 999999 444444 000 8888 666 88 666666 0 88888888888888888 8 444 8 0 6 6 8 444444 222222 00 00000 000000000000000000000000000000000000000000000000000000 5555 0 22 6 0 0 222222222222 00 0 0 555 555555 55 0 88 0 0 888888888 00000000 7 3 0 3 77 7 7 3 3 3 3 33 333 00 777777777 3 000000000000000000000 0 0000000 5555 0 5 0 000 55 0000 5555555555 0 00000 0 7 3 333333333333333 7 333 333 3 7 3 0 3 7 3 3 00 7 00000000000000 5 0 0 55 55555555555555555555555 0 0000 55555555 7 777 0000000000000000000000000 3 555555555555555555555 55555555 5 0 0 55 555 5 5 0 0 0000000000000 0 5555 5555 0 0 00000000 0 00 00 000 0 0 00 00000000 000 00 000 5555 5 5 5 0 55 0 55555 00000 5 000 0 0 0000000000 0 0 000 0 3333333333333333333333333 33333 77777 7 00000000000 0 3 555555555555555555555555555555 0 00 555555 55555555555555555555 55 000000000000000 0000000000
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCATACAGTAAGT--TAGTAAGT--A-GT--AAA-ATG---TTTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-C-A--TAT-A--T---TTC-A---A-TA---T--AAT-TTTA--CA-C-C--CGCCCCAA---CG----GA-C----T--AT--A-TG---T-CAC-TTTAAAAACAA--TCA-AC--ACAAT--AAACAA-C-TTC-T-GCGCA---T-G-TACAGTTATTT--AAAAAACAAAAAG--A-AAAT--TA-CAAGTA-NGTGGG-T---A-T-G-----TGAAG---T-A--TTTTTG--------T--CTGGTGTTAT-A-GAACT-----A--NNAATAAATGTTT--GC---AA----NTATGTCT-TAGAAAA-TTAC--A--NA--AATGT--T-T--AGAT------AA-ATAC-AG-TC--ATT-AA--T-TA-C-T------A---C--AAA-TAATTGAA------TTAT-G----TGG------CTTTCCTCAAG--N---------TT--TTTTGT-CTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AA-T--TTCGCCGC---TT-TG--TCTTGGGA--A---ATT-ACAAAACA-ATA-TT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATT-T-GATT--AT-TTTA--CATTAAG-CC--A-----AT----TTT---CAT---T-ATN-------AAA--AT---TTTCTTTG-T--CT-TTATA-A-AG-GG-ACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCA-GATTC-A-TTTCATTCGGTTCACACATAAGACNAATTCTATCCTC-GATTGG-TTC-TGC-TTTATA-TCGACCCGTTTCTATTCTTAAAAGGCAGG-----ATTCCACAA----TC--TGAA--C--ATGGCCATGGT------A---GATCT---N-----------A-ATGGTTTGGG------AATATCCAATATTACA-TA-TTTTTTCTAC-G-T------TG----TAATGT--GAT-TTTAGGATGGTGTAGGTAN----CGAAG-TTT-GG--AACATG-CTG-TAGATC--AT--T-TAA--C-ATTGTGTTTCCATATTTAATCGTAT-TTCTC-TCCTC-TGCGTGTTGTAAATTAC-AAGTTG-TG-CAA-TTTTGGTA-A-CATT--TTCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAATTNCCAGTTAAANATGGATTTGTTTGATCGCGACCGNCCCCCAGAGAAAACACCCGTTTTGTAACCAAGATCCGTCTCAGTTTTTCCCGTTATCGNATATTATACAGATTCCAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGACAG-GACGACA-TAATCCATC-ACGATCTC-CCCTGGACTGCT-AATAAC-GGGGTAA-AT-CTGATGAA--CACNAAAGGAATGTATCTTAACGCCCGGTTTTGGACCATGATCAA-AGGCAGT-ATTTTCCTTTGTATCCCCNAATCTCCGCTAGCTATAA-TCTA-A-GACAGGGNCGACGACA---GTTGACG-AATA-TTTTTCGAA-TGTTA---TGAA-TCCAACGTGATTTTAAAATTGNAATCGATTTTTGAAGTGACTGCTCCCAGNGCCCTCCCTCCAAGATTTAGCTAANTTTCCTGCGTTTCTTTTAA-TTTTCAACNTNTTTTTCGTCGAAAATTACTCCCNAAATTTGTANTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCTTNCNCNATTNTTCNATACACCAATCGTTTGAACAGGTGTTTACACNCGTNTTTTGGCAGTATCGTTCTTCACCAGAGAGCTGAGAGATTCAAGGCAAGTNTCGTCAGCGGTATCAAA---AG-TAGG--C-TT----AGGTT-GTA-ATCGT-T---GATTTTGAACCC-C--TT-----GTTTA-AAGA-TTTCCAGATGTTTAATCTACCAGAAAATTCGGTCGTATGAGAAGGGCAAACNATGTTNGNGGATTAAAATTTGGTCCACCCCTTCTGCNAGACTCCAGCGTATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( gi|2 ) : AATAAACCAATCAATTAATAAATAAATATATTCTAATTATATAGTAAGT--TAGTAAGT--A-GT--AAA-ATG---TTTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-C-A--TAT-A--T---TTC-A---A-TA---T--AAT-TCTAT-CA-C-C--GGCCCCAA---CG----AA-C----T--A---A-TG---T-CAC-TTTAAAAACAA--TCA-AC--ACAAT--AAACAA-T-TCT-T-GC-CA---A-G-TACAGTTATTT--AAAAAACAAAAAG--ACAAAT--TT-CAAGTA-TGTGGG-T---A-T-G-----TGAAG---T-A--TTTTTG--------T--C-GGTATTAT-A-GAACT-----A--ATAATGAATGTTT--GC---AT----ATATATCT-TAGAAAAGTTAC--A--CA--AATGT--T-T--AAAT------AG-ATCC-AGCTC--ATT-AA--T-TA-G-T------A---C--AA--TAATTGAA------TTATCG----TGG------CTTTCCTCAAG--G---------TT--TTTTGT-CTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AA-T--TTCGGCGC---TT-TG--TCTTGGGA--A---ATT-ACAAAACA-ATA-TT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATT-T-GATT--AT-TTTA--C-TTAAG-AC--A-----AT----TTT---CAT---T-ATA-------AAA--AT---TTTCTTTG-T--CT-TTGTA-A-AA-GG-ACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCA-GATTC-A-TTTCATTCAGTTCACACATAAGACCAATTCTATCCTC-GATT-G-TTC-T-C-TTTATA-TCGACCCGTTTCTATTCTTAAAAGGCAGG-----ATTCCACAA----TC--TGAA--C--ATGGCCATGG-------A---GATCT---A-----------ACATGTTTTGGG------AATA-CCAATATT-CA-TA-TTTTTTCTAC-G-T------TG----TAATGT--GAT-TTTAGGATGGGGTAAGTAG----CGAAG-TTT-GG--AACATG-CTG-TAGATC--AT--T-TAA--C-ATT-TGTTTCCATATTTAATCGTAT-TTCTC-TCTGCTTGCGTGTTGTAAATTACAAAGTTG-TG-CAATTTTTGGTA-G-CATT-ATTCAAAGTGTAGAG-ATCCATGATATTTTTTATTTG-ATAGTTTCCAGT---AGATTGATT-GTTTG--CGC--CCGGT--CCAAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT-CC----AT-GTATATTTAATCGATTC-AGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAG-G-TGACA-TGATCCATCCACAATCTC-CCCTGGACTGCT-AATAAA-GGGGCAA-AT-CTGATGAAACCACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAATA--CAGTGATGTTT--TTATATCAC-AAATT--CACTA-CTATAAATCTA-A-GACAGGGG-GACCACC---GTTGACAGAATAATTTTTCGAA-TGTTACTGTGAA-TC-AACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAAA----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTCTAT-CACCAATCG-TTGA-CA--TGTTTA-ACATGTGTT---GCA-TATCG-TCTTTA-----GAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTA-C-AA---AG-TAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-T--ATCTGCTAGA----T--GTT-TATGAAAAGGGCAAAAAATG-TAGGAGAT--AA--TTCGTCGA-CC---TTGCG-AACTCCAG-GT-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCAGCGTAC
gi|9 : ATATATACATGTAGT--AATCACAT-GT---T--TAG-AAGTTTA--T--AAA---------TTAT-A---TACT-GAC---ATGTA-TAATACA-TCAACA-A-TT--------------A-C-AG-TAT-TGTT---TTC-A---T-TA---CCAAAT----A--CA-C-CC-GGCCCCAC---CG----AC-C----T--A-----TAC--T-CAC-TTTGAG--CAA--TCA-AC--A-AAT--AAACAA-T-TTC-T-GCGCGTGTA-G-TACAGTCAGTT--AA
gi|8 : actaatcaatttttggtgttggaagtcccTACAGTAA-----AGTAAGT--A-------A-ATA---TTTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-C-AA-TAT-A--T---TTC-A---A-TA---C--AAT-TTTA--CA-C-C--CGGCCCAA---CG----GA-CC---T--AT--A-TG---T-CAC-TTTAAA--CAA--TCG-AC--ACAAT--AAAAAA-T-TTC-T-GCGCA---T-G-TACAGTTATTT--AAAAAA-AAGAAG--A-AAAT--TA-CAAGTA-AATGAG-TTACG-T-GGCTCCTGAAG---T-A--TTTTTG--------T--CTGGTGTTAT-AAGAACT-----A--TAAATAAAT-TTT--GC---A-----GTATGTCT-TAGAAAA-TTAC--A--AAC-AATAT--T-----GAT------AA-ATAC-AG-TC--ATT-AA--T-TA-C-T------A---C--AAA-TAATTGAA------TGAT-G----TGG------CTTTCCTTAAG--T---------TT--TTTTGT-CTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AA-T--TTCGttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
gi|19 : ttaaatacacaatccatgtttaccttgatacgttttattcatacgTACAGTA--T--CAG-AAGT-----T--AACTAT----TTTTATTA---T-GT-GAC---ACGT--TAATATG-TTTACA-A-TATTTTACATTTCATTA-C-AATTAT-A--T---TTC-AATTA-TA---T--AAT-GCTTTACA-C-CCGGGCCACAAACTCGA---AA-C----C--AT--A-TGTCCT-CAC-TTTTAAATCAAATTCATAC--ACA
gi|11 : gGTAAGTAGTAGTAAGT--AAGT--AAA--TG---TTTTATTA---TAGTGGAC---ATGTG-TAATACATTTTACA-ATTA--------------A-CAA--TAT-A--T---TTC-A---ACTA---T--AAT-TCTTA-CA-C-C--CGGCCCAA---CG----GACC----T--ATTTA-TG---T-CAC-TTT--AAACAAT-TCA-AC--ACAATTAAAACAA-C-TTC-T-GCGCA---T-G-TACAGTTATTT--AAAAAA-AAAAAG--A-AAAT--TTACAAGTA-AATGGGTT---ATT-G-----TGAAG---T-AATTTTTTG--------TTCT-GGTGATATCA-GAACT-----A--TAAATAAATG-TT--GC---AA----TTATGTCT-TAGAAAA--TAC--A--AAACAATGT--T-T---GAT------AA-ATAC-AG-TC--ATT-AA--T-TA-C-T------A---CAAAA--TAATTG
gi|16 : agtaagtaagtaagGTAAGT--AAGTAAGT--AAGT--AAA--TA---TTTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-CAA--TAT-A--T---TTC-A---A-TA---T--AAT-TTTA--CA-C-C--CGACCCAA---CG----GACC----T--AT--A-TG---T-CAC-TTT--AAACAA--TCG-AC--ACAAT--AAACAA-C-TTC-T-GCGCA---T-G-TACATTTATTTA-AAAAAACGAAAAG--A-AAAT--TA-CAAGTA-
gi|13 : GT--CAATAAGT--A-----AAT-ATGGTATTATATTGAACTATT-GACGATATTTG-TATTTCA-TT-ACA-A-TA-----------------------T-A--T---TTC-A---A-TA---T--AAT-TTTA--CA-CTC--GGCCC-AA---CG----GA-CC---T--AT--A-TG---T-CAC-TTTAAA--CAA--TCA-AC--ACAAT--AAACAA-T-TTA-T-GTGCA---T-G-TACAGTCATT----AATTAC-----T--ACAAATAATT-AAATGA-TGTAGC-T---T-TCT-----TTAAG---T-A--TTTTTG--------T--A-AGATTTAT-G-GGATT-----G--ATa
gi|14 : tatacatgtaatacttgccaacagaagat--TAGTAAGT--ACGTTAGAA-GTA---TGTTATT------GA-GAC---ATGTG-TAATTCA-GTTACGTA-TA--------------A---A--TAT-A--T---TT------A-TA---C--AAT-T-TA--CA-C-C--CATCCCCA---CGGCCCGA-C----T--A---GCTG---T-CAG-GCTAAGA--AA--T---GC--ACACT--AAACAA-TGTCTAT-G---A---ATG-TACAGTCATTcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|1 : AA-ATG---TTT-AGTA---TAGT-GAC---ATGTG-TAATAC---TTACAGA-TA--------------A-C-A---AT-A--A---TT--A---A-TA---T--CAT-TTTAT-CA-C-C--CGCC--AA---CG----AC-C----T--A-----TA---T-TACGTTTTGAAACAAA-TCATAC--AC--T--AAAAAA-C-TTC-T-GCGCA---T-G-TACAGT-ATTT--AAAAAACAAAAA-------AT--TA-CAAGTAATGT----T---A-T-G------GAAG---T-----TTTTG--------T--C-TGT-TTAT-G-GAACT-----ATAATAAT-AATATT---GC---AA----A---GTCTGTAGAAAA--TAC--AAACA--TATGT--T-----GAT------GA-ATAC-A---C--GTC-AG--TGTATA-T------A---C--AACATAATTGAA------TTAT-G----TG--------TTTCCTCACC--G---------TT--TTTT---CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGA-T--TTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CA-ATA-TT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC---GATT--TTGTTTA--CATTAAG-CC--A-----------TTT---C-T---T-ATT-------AA--------TTTCTTTG-T--TC-TTGTA-A-AA-GGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-A-ATTCAT-CAGTACA-ACATAAGAC-AATTCTATCCC---ATT-GGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTTAAA-GGCAGC-----AAGCCACA-----TC--TGAA--C--ATGGCCATCG-------GTATGATCTTTTA-----------A--TGGTT--GG------AATATCCTATA---CA-TA-TTT---CTAC-GGT------TG----TAATGT--GAT-TT-AGGATGGTGTAGGTAC----GGAA---TT-GG--AACATG-CTG-TAGATTTTAT--TGTAA--CCATTGTGTTTCCATATTTAATCGTATCTTCTCCTCTGCGT---TGTTG-AAATTAATAAGTTG-TG-CAAGTTTTGGTA-GACATTTATTAAAA-----------CCATGAT--TTTTTATTTGGATTATTACT--T---AGAT-GATTTGTTTGATCGCGACCGTC--CCAAAG-AA-TACC-GTTTTGTAACCAAG--TCGT-TC-GTTTTTCC----ATCGAATATTATACAGATTCCAGAGGCGTAGCATAATTCATT-CAT------AAAACTGGCAG-GATGACA--AATC-ATC-ACGAT-TC-CCCTG-AC-GCTCAATAAC-GGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAA-AGGCAGT-ATTTTTCTTTGTATCCC-CAATC--CACTAGCTATAA-TCTA-ATGTCAGGGCTGACGACA---GT-GACGCAATA-TTTTTCGAAATGTT-----GAA-CCCAACGTAA--TTAA--T-GTAATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCT-ATTTTC-TGCGTTTCTTTTA--TTTTCAACGTCTTTTTCGTCGAAAATTACTCCTAAAATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATACACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTTCA-----GAGT-GAGAGATTCAAGG-AAGTC--GTCAGCGGTA-CAAA---AG-TAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTT--ATC--CCAG-----T--ATCGTATGAGAAGGGCAAACAATGTTAGTGGATTAAA--TT-GTCCACCC---CTGCGAAACTCCAGCGTATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCAagaataccgcgtacatataaatcaccagacggaacatcagtacgtgaccgtccctaatatcactgtctggcgttacaaaataaatttttcattt
gi|25 : t---TTTTATTA---TAGT-GGC---ATGTG-TAATACA-TTTACA-A-TATTT-----------A-C-T--TTTCA--T---TAC-A---A-TA---T--ATT-TCcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|4 : caaataaaatgtaattcataaactttcaTTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-C-AA-TAT-A--T---TTC-A---A-TA---T--AAT-TTTA--CA-C-C--CGGCCCAA---CG----GA-CC---T--AT--A-TG---T-CAC-TTTAAA--CAG--TCA-ACCCACAAT--AAACAA-C-TTC-T-GC-AC---T-G-TACAGTTATTTTAAAAAAACAAAA-G--A-AAAT--TA-CAAGTA-AATGGG-TT--A-T-G-----TGAAG---T-A--TTTTTG--------T--CTGGTGTTAT-A-GAACT-----A--TAAATAAATGTT---GC---A-----ATATGTCT-TAGAAA---TAC--A--AAC-AATGT--T-----GAT------AA-ATAC-AG-TC--ATT-AA--T-TA-C-T------A---C--AAA-TAATTGAA------TTAT-G----TGG------CTTTCCTCAAG--G---------TT--TTTTGT-CTG-GT-GT-T---GTAAG-A--TTAT-A----AATA-AA-T--TTCGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAAACA-ATA-TT--AAT-AAA---TA--CAGAGTCGTC-AATCTGATT-TAGATT-------TA--CATTAAG-ACC-A-----AT----TTT---CAT---TTATT-------AAA--ATATTTTTCTTTG-TT-CT-TTATA-A-AA-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCA-GATTC-AATTTCATTCAGTTCACACATAAGACAAATTCTATCCTC-GATTGG-TTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-AAAGGCAGG-----ATTCCAC-A----TC--TGAA--C--ATGGCCATGGT------A---GATCT---T-----------A-ATGGTTTGGG------AATATCCAATATTACA-TA--TTTTTCTAC-G-T------TG----TAATGT--GAT-TTTAGGATGGTGTAGGTA-----CGAAGTTTT-GG--AACATG-CTG-TAGATC--AT--T-TAAC-C-ATTGTGTTTCCATATTTAATCGTAT-TT-TC-TCCTC-TGCGTGTTGTAAATTAC-AAGTTG-TG-CA--TTTTGGAG-A-CATT--TTCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAATaa
gi|20 : TTTATTA---TAGT-GAC---ATGTG-TAATACA-TTTACA-A-TA--------------A-CAA--TAT-A--T---TTC-A---A-TA---T--AAT-TTTA--CA-C-C--CGGCCCAA---CG----GACC----T--AT--A-TG---T-CAC-TTT--AAACAA--TCA-AC--ACAAT--AAACAA-C-TTC-T-GCGCA---T-G-TACAGTTATTT--AAAAAACAAAAAG--A-AAAT--TA-CAa
gi|18 : T-GAC---ATGTGGTAATACA-TTTACA-A-TA--------------AGC-A--TAT-A--TGGGTTCAA---A-TAGGGT--AATGGTTA--CACC-C--GGCCCCAC---CG----GA-CCCTAT--A---G-TG---TCCAC-TTT--AAACAA--T-A-ACA-ACAAT--AAACAACT-TCT-CGGCGCA---T-GTTACAGTTATTT--AAAAAAAGAAA
gi|5 : gagaggtaagcatttttgactt-TAATACA-TTTACA-A-TATTTGCATTTCAT--A-C-AA-TAT-A--T---TTC-A---A-TA---T--AAT-TTTAC-TC-C-C--GGCCA-AA---CG----GA-C----CTAA---A-TG---T-AAT-TTCAAG--CAA--TTA-AC--ACAAT--AAACAA-T-TTC-T-GC-GC---A-G-TACAGTCATT-----------AATTGCTACAAATAATT-GAATTG-TGTGAC-T---T-TCC-----TTAAGTATT-A--TTTTTG--------T--CTGGTGTCGTAA-GAATT-----A--TAAATACAT-TTT--GC---AG----CT-TGTCT-TGGGAAA-TTACAAA--CC--AATAT--TAT--AAATAC----AGTATCA-ATCTG--ATTAAA--T-TA-ACT------AAACC--AA--T--TTCAA------TTAT
gi|7 : ---A-T-G-----TGGAG---TTA--TTTTTGGTTCCTTGT--T-GGT--TAT-A-GAACTTATAAA--ATAA--AATGTTTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC--AAACA--AATGT--T-GGAAAATCATACAAG-GTTTTACCTCCCATT-AAA-T-TA-T-TCCTCTCA---C--AAATTAATTGAAATTATGTTGTCGGGTTTGGTCCTTTCCTTCCTCAAA--GGTTTTCTTTTT--TTTTGT-CTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TT-T--TTCGCCGCCAGCT-TGTTTCTTGGGA--AAATATTAACAAAACC-AT--TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATT-T-GA-A--AT-TTTA------AAG-AT---------T----TTTACCCAT---T------------AA--GC---TTTCTTTacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|12 : AGGTAC--A--GA--CATGTGAT-T--ATAT------ATTATC---GTTC--AAT-AACAT-TA-A-T------A----------TTGTTCAA------TTAT-G----TAG------TTTTATTCAAG--C---------AT--TTTCGT-CTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---A-T--TTTGCTGT---TT-T---TCTTGGCA--A---ATT-ACAAACCACATA-tatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|5 : attatacgtacatattgtataccttatacaacagaaaatgtctgtgcC-AG-TC--ATT-AA--T-TG-C-T------A---C--AAA-TAATTGAA------TTGT-G----TGA------CTTTCCTTAAGT-A---------TTATTTTTGT-CTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CA-T--TTTGCAGC----T-TG--TCTTGGGA--A---ATT-ACAAACCA-ATA-TT--A-T-AAA---TA--CAGTATCA---A-TCTGATT-A-AATT--A-----A--C--TAAA-CC--A-----AT----TTC---AAT---T-ATACATGTATAAA--ATA--TTCCTTTGTT--CT-TTATA-ACAG-GG-ATAAAT-----A-AG-TG-GGGGAAAA------A-----TTCAGGATTC-A-TTTCATTGTGTCCA-ACATATGA-CAATT-TCTCCTC-AATCGG-TTC-T-CTTTTATA-TCGACCCGTTTCTATTCGTAAAA-GCAGG-----ATTCCAC-A----TC--TGAA--C--AGGGCCATGGT------A---GATCT---C-----------A-ATGGTTTTGA------AATATCCAATTTTACA-TA-TTTGTT-TAC-G-T------TG----TAATGT--GAT-TTgataatttgatttaaatctgcattacatctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|13 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacctaaatgtaatttcaagcaattaacacaataaacaatttctgcgcagtaC-AG-TC--ATT-AA--T-TA-C-T------A---CA-AA--TAATTAAA------TGAT-G----TAG------CTTTCTTTAAG--T---------AT--TTTTGT-c
gi|11 : tatacatgtaatacttgccaacagaagatgtcaataagtaaatatggtattatattgaactattgacgatatttgtatttcattacaatatatttcaatataattttacactcggcccaacggacctatatgtcactttaaacaatcaacacaataaacaatttatgtgcatgta-AA--T-T----T------A---C--AAG-TAAATGGG------TTATTG----TG---------------AAGTAA---------TT--TTTTGTTCTG-GT-GA-T---ATCAG-AA-CTAT-A----AATA-AA-TG-TT--GCAA---TTATG--TCTTAGAA--A---A-T-ACAAAACA-ATG-TTTGA-T-AAA---TAC----AGTCATT-A-aagatttatgggattgatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|10 : agtaagtaagtaaggtaagtagtagtaagtaagtaaatgttttattatagtggacatgtgtaatacattttacaattaacaatatatttcaactataattcttacacccggcccaacggacctatttatgtcactttaaacaattcaacacaattaaaacaacttctgcgcatgtacagttatttaaaaaaaaaaagaaA--C-TA-G-T------A---T--AAAATAATCAA--------TATC----------------TACCT-AAT--T---------TT--TTTTGT-TTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGT--TT--GCTC---TC-TG--TCGTGGAT--A---ATT-G-ATGATA-ATATTT--A-C-AAA-------GAGGGT-ATA-A-TCTAA-----AATTAAAT-TTTGGTA-TTGAG-AT--ACACCTAT----TTT----GT---T-GAA-------GAA--ATCA-TTTCTTAA-C--CTATTATATA-AG-GG-GCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCT-GTTTCTA-TTTTGTTTTGATCACATAGAGCACATATTCTGTCCTCAAATG-G-TTC-A-CATTTATA-TCTGCCAGTTTCGATTCTT-AGGGGTAAA-----ACTCCGC-A----TC--TGAA--C--ATGGACAattactacaaaataattg
gi|8 : t-T------A---C--AAG-TAAATGAG------TTA-CG----TGG------CT--CCTGAAG--T---------AT--TTTTGT-CTG-GT-GT-T---ATAAG-AA-CTAT-A----AATA-AA-T--TTT-GCAG---TA-TG--TCTTAGAA--A---ATT-AC-AAACA-ATA-TTG-A-T-AAA---TAC----AGTCATT-A-aaactggcctcacattt
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcatacgtacagtaaagtaagtaaatattttattatagtgacatgtgtaatacatttacaataacaatatatttcaatacaattttacacccggcccaacggacctatatgtcactttaaacaatcgacacaataaaaaatttctgcgcatgtacagttatttaaaaaaaagaagaaaatTTTGT-CTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AA-TAATGCAG-AT---TG-AG--TCTTGGGG--ACA-ATT-ACAA--CA-ATA-TT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTAA-AATT--AC-T-------TTAAG-TCCAA-----AT----TTA---TAA---T-ATG-------CAA--AT------------T--CT-TTATT-C-AG-GG-ACAAAC-----T-AA-TATG----AAA------ATGTTattactacaaataattgaatgatgtggctttccttaagtttttttgtctggtgttgtaagaattataaataaatttcg
gi|3 : actaatcaatttttggtgttggaagtcccatatatacatgtagtaatcacatgtttagaagtttataaattatatactgacatgtataatacatcaacaattacagtattgttttcattaccaaatacacccggccccaccgacctatactcactttgagcaatcaacaaataaacaatttctgcgcgtgtagtacagtcagttaattacCTTGGGA--A---ATT-AC-AAACA-ATA-TTG-A-T-AAA---TGC----AGTCATCAA-TCTGATT-TAGA-------TTTA--CATTAAC-CC--A-----GTCCAATTT---CATAA-T-ATA-------GAATTTT---TTTCTTTGTT--CT-TTACA-A-AA-GG-GCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC-----TCAATTGGTTC-----T----CCGTTTATATC---------G-TT--T-C-T---------ATCCGT---CATAC-CAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATGGACATGGTA---GATCT---ACAGTGAAATGGAGATATTATGCGCGCGCAAGTATCCAATGTTACAGTACTTCTTTCTATAG-T------TACTACTAATTTTGGCTGTTTAGGAT--GGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGT-CAAACC-ATTGTCTTTCCAAATTTAAAC-TAT-TTTTC-TCCTC-TGCGTTTTGTAAATCAC-AAGTTGTTGCCAATCTTTGATATA-CATT--TTCAAAGTGTACAGAATCCATGATATTTTTTATTTG-AAA--TTCCAGTTAAATATGGATT-GTTTG--CG---CCGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTT-TCCGTTAT-GTATATTg
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATT-T-AA----AA-TTTA--C-TTAAGTCC--A-----AT----T-----CATAGAT-ATG-------AAA--------TTCTTTA-T--AT-C-----A-CG-GG-ACAGAC-----T-AAATA-G----AAA------ATGTTTTTattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|7 : ttaT---TTTTTTTG-TTCCT-TTATA-A-AAGGG-ACAAAC-----TAAA-TA-G----AAATCCATCATGTTT
gi|26 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctTTTTCTAC-G-TAATAGATC----TAGCGC--GAT-TTCAAAATGATGCAAGT-T----CGGAA-TCTCGG--AACATG-CTG-TAAGTC--AC--T-c
gi|3 : ttactacTC-AGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAG-GATGACA-TAATCCATCCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT--------------------C--TTGTATCCCCAAATTTCCGC-A-CTATAA-TCTA-A-GACAGGGGCGAT-ACA---GTTGATG----AATTTTTCGAA-TGTTA---TGAA-TCCAACA-GATTTTAAAATTGAA-TGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCCA-GATTTAGCTAAGTTTTCTGCGTT-TTTTTAA-TT-TC--CC-GTTTTTCGTCGAAAATTACT-TCTAAA----TATTTccat
gi|23 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatacacataattagacaatatttctatcctcaattggttctccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnn-GTAGCATA-TTCAGCTGA-------TGT--CGACAGAA-CGAAATTGA-CCATC--CAATTTCTCCTTGGGCTGCT-AAGATT-GGTGTGA-AA-C-GATGAAgta
gi|24 : caaagtcAATCTATA-GACAGGGT-GGCGACTAAGGTTGAC-GAATA--TTCTCGAA-TGTTA---TGAATTC-AAcgc
gi|17 : ccccgaattcccaacttatttagactTCGAAA-TTCCGCAATTTTTCTA--CACCAATCG-TTGAACAG-TGTTTACACTCGTGTTTTGGCA-TATCG-TCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATC-AATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTTCaccgattt
gi|6 : aA---AA-TAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TG-TTAATTTACTAGAAAATTCGGTT-TATGAAAA-GGCAAACCATG-TTAGGGAT--AAATTTGGTCCA-CCCTTTTGCC-GACTCCAA-Gagt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TCTTCCACACAATTTATTGAACACAAAGTGCATATTCTTTCAACAATAGGTTATCCATAACCAGTCTCTAATCTTAAAGGTAAAATACCACACCTAAACTGCGACATAATTGACCTATATTAAGGTATTTTGCCATATGCGATGTTACATAGTTTTCTCGACCAAAGGCTGATTTAAGAGAAGTCTAGTTTAGGTAC
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 111111111 333333333333333 444444444444444444444 11 22 22222222222222222222222222222222222222 111 1111 111 2222222222 33 333 11 11 111111111 11111111 333333333333333333 2222222222 11111 22222 111 1111 111 222222222 1 44444444444 222222222222222222222222222222222222222222222222 11 1 1111111 111111 111111 111 111 111 11111 111111 1 111111 33333 2222222222 333333333333333333333333333333333333 111 2222222222222222 1111 11 11 11 111 11 22 1 1 1 1 111 1 222222 2 111 2222 1 1 11111111 3333333 11111 333 333 2222 2222222222222222222222222222222222222222222222222222222 1 33333333333333 1 11 1 1 11 1 1 111 11 2 888888888888888888888 2222222222222 11111 111 2222 1 1 1 11 1 2222 11 2222 1 22 22 11 1 333333333 1 1 333 2 22 1 11 1 2 2 1 222 11 222 33 1 333 22 2 11 333 2 1 444 2 22 1 4444444 11 1 2222 11 1 11111 1 11 22222 222 1 222 777777777777777777777777 1 44 22 33333 222 1 1 2 1 1 11 1
lowQualScore : 0 99999999 1 1 888888888 3 66 444444444444444 555 3 555 2 2 5 2 777777777777777777777 66 555 555 5 555 33 33 5 5 77 77 555 9999 6 99 44 3 555 3 5 55 44 3 6 44 3 44 44 555 3 0 77 99999 1 666 5 8 4 55555555555555555555555555555555555555 777 7777 222 999 8 4 0000 4 66 5 7 000 3333333333 1 5 77 1 00 222 00 00 4 777777777 4 4 44444444 66 4 4 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 6 888 00000 66 333 4 4 6666 4 111 555555555 4 2 22222222222 888 444444444444444444444444444444444444444444444444 4 33 4 4 4 3 4444444 8 111111 222222 99 222 6 4 1 000 5 000 5 3 2 77777 5 0 0 666666 4 444444 0 11111 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 6 000 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 99 33 0 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 4 6 55555555 7 7 9999999 33333 0 7 7 777 111 8888 3333333333333333333333333333333333333333333333333333333 2 0 3 33333333333333 55 44 2 0 33 2 6 0 2 3 0 44 0 0 333 33 88 7 3 7 111111111111111111111 2 1 4444444444444 88888 111 1111 5 0 3 0 0 33 3 0 0000 6 11 4444 7 4 77 0 6 6 00 0 22 33 7 6 7 777777777 7 2 11 3 7 1 2 555 3 0 3 77 5 88 5 0 4 0 5 000 77 111 88 1 1 1 1 4 7 444 77 3 33 1 777 3 2 222 999 3 6 66 5 5555555 0 33 0 1111 22 0 88888 3 0 33 55555 111 0 111 666666666666666666666666 0 6 1 7 1 4 77 77 6 66666 000 3 6 6 3 6 3 5 88 5
lowQualScore : . ........ . . ......... . .. ............... ... . ... . . . . ..................... .. ... ... . ... .. .. . . .. .. ... .... . .. .. . ... . . .. .. . . .. . .. .. ... . . .. ..... . ... . . . ...................................... ... .... ... ... . . .... . .. . . ... .......... . . .. . .. ... .. .. . ......... . . ........ .. . . ... . . .................. . .......... . . . ..... . . . .... .. . ... ..... .. ... . . .... . ... ......... . . ........... ... ................................................ . .. . . . . ....... . ...... ...... .. ... . . . ... . ... . . . ..... . . . ...... . ...... . ..... .. .......... . . . . .................................... . . . . ... ................ ..... . . . .... .. .. .. . .. . . ... .. .. . . . . . . . ... . ...... . ... . .... . . . . . ........ . . ....... ..... . . . ... ... .... ....................................................... . . . .............. .. .. . . .. . . . . . . .. . . ... .. .. . . . ..................... . . ............. ..... ... .... . . . . . .. . . .... . .. .... . . .. . . . .. . .. .. . . . ......... . . .. . . . . ... . . . .. . .. . . . . . ... .. ... .. . . . . . . ... .. . .. . ... . . ... ... . . .. . ....... . .. . .... .. . ..... . . .. ..... ... . ... ........................ . . . . . . .. .. . ..... ... . . . . . . . .. .
lowQualScore : 2 00000000 7 7 000000000 2 99 666666666666666 888 1 444 9 9 7 9 666666666666666666666 88 000 000 7 000 99 99 7 7 33 88 444 6666 2 66 22 1 444 1 5 66 22 1 2 22 1 66 66 888 3 1 99 11111 4 444 0 0 0 55555555555555555555555555555555555555 888 0000 222 000 9 4 4444 4 99 0 6 111 6666666666 4 7 11 0 66 999 66 66 4 888888888 4 4 88888888 44 4 4 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 5 888 55555 11 999 4 4 5555 0 000 777777777 0 0 77777777777 999 666666666666666666666666666666666666666666666666 0 55 4 4 4 3 9999999 9 222222 888888 22 555 3 3 4 000 7 777 7 9 7 66666 7 1 7 444444 1 777777 3 11111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 7 777 4444444444444444 99999 7 0 7 2222 22 33 22 0 00 0 0 222 00 88 0 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 7 33333333 3 3 3333333 33333 7 3 3 333 333 0000 8888888888888888888888888888888888888888888888888888888 5 0 2 55555555555555 22 55 5 0 22 0 5 0 5 2 0 22 0 0 000 88 33 3 7 3 333333333333333333333 5 0 5555555555555 55555 000 2222 0 8 2 0 0 22 2 0 8888 5 22 6666 3 0 33 7 7 7 77 7 00 00 3 7 3 777777777 3 0 77 3 3 0 5 000 0 0 0 55 5 55 5 0 0 0 5 555 55 000 77 0 0 0 0 0 3 333 00 3 00 0 333 3 3 333 333 3 7 00 0 5555555 2 88 0 2222 55 0 55555 0 0 88 00000 000 0 000 777777777777777777777777 7 7 0 3 0 0 00 33 7 33333 333 3 7 0 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AAT---CGTACAGTAAG---T--TAGTAAG--TA-GT--AAA-ATG---TTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-AA-TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CACCC--G-NCCCAA---CG----GA-CC-TAT--A-TG---TC-ACTTTAAAA-CAA--T-CA-AC--A-CAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAAGTAN-G-----TGGG-T---A-T-G-----TGA--------AG---T-A--TTTTTG---TCTGGT--GTTAT-A-GAACT-ATAAA-TAA--A-TGTTT--GC---A----ANTATGTCT-TAGAAAA-TTACAAAC-AATGTTT-GATAA--ATACA--G-T---------CATT-AA-TTACT------AC-AA-AT-AATTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---T-ATN-------AAA--AT---TTTCTTTG-T--CT-TTATA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-A-TTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TNC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTG-TAA--C-ATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAATT-CCAGTTAGATAT-GATTTGTTTG--CGCG-CCGGCCCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCCCG------------T-ATCGN-ATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTCCCCT-GGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATC-AA-GCAGT-AT-TT--TTTGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACNACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTT--AATTG-AATGAATTTTTGAAATGACTGCTCCCAG-GCTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG--TCCGCCATTNTTC-ATACACCAATCGTT-GGACAG-TGTTTA-ACACGTGTT---GCA-TATCGTCCTT---CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTT-ATAAGA-TTTCCAG-TGTT--ATCTGCTAG-A-AT---GTT-TATGAAAAGGGCAAACAATGTTAG-GGAT--AAATTC-GTCCACCC---TTGCGAGACTCC-AGCGT-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AAT---CATACAGTAAG---T--TAGTAAG--TA-GT--AAA-ATG---TTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-A--TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CACCC--G-CCCCAA---CG----GA-C--TAT--A-TG---TC-ACTTTAAAAACAA--T-CA-AC--A-CAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAAGTAN-G-----TGGG-T---A-T-G-----TGA--------AG---T-A--TTTTTG---TCTGGT--GTTAT-A-GAACT-ANNAA-TAA--A-TGTTT--GC---A----ANTATGTCT-TAGAAAA-TTACANA--AATGTTTAGATAA--ATACA--G-T---------CATT-AA-TTACT------AC-AA-AT-AATTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---T-ATN-------AAA--AT---TTTCTTTG-T--CT-TTATA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-A-TTTCATTCGGTTCACACATAA---G-ACNA-ATT-CTATCCTCGATTGGTTC-TGC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTANCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT--TAA--C-ATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAATTNCCAGTTAAANATGGATTTGTTTGATCGCGACCGNCCCCCAGAGAAAACACCCGTTTTGTAACCAAGATCCGTCTCAGTTTTTCCCG------------TTATCGN-ATATTATACAGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGACAGGACGACATAATCCAT-C-ACGATCTCCCCT-GGACTGCT-AATAA-CGGGGTAA-AT-CTGATGAA--CACNAAAGGAATGTATCTTAACGCCCGGTTTTGGACCATGATCAAAGGCAGT-ATTTTCCTTTGTATCCCCNAATCTCCG--CTAGCTA---T-AATCTA-A-GACAGGGN--CGACGACAGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGTGATTTTAAAATTGNAATCGATTTTTGAAGTGACTGCTCCCAGNGCCCTCCCTCCAAGATTTAGCTAANTTTCCTGCGTTTCTTTTAATTT-TCAACNTNTTTTTCGTCGAAAATTACTCCCNAA-ATTTGTANTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCTTNCNCNATTNTTCNATACACCAATCGTTTGAACAGGTGTTTACACNCGTNTTTTGGCAGTATCGTTCTTCACCAGAGAGCTGAGAGATTCAAGGCAAGTNTCGTCAGCGGTATCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATTTTGAACCC-C--TT-----GTTT-A-AAGA-TTTCCAGATGTTTAATCTACCAGAAAATTCGGTCGTATGAGAAGGGCAAACNATGTTNGNGGATTAAAATTTGGTCCACCCCTTCTGCNAGACTCC-AGCGTATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATG---TTT-AGTA---TAGTG-AC---ATGTG-TAATAC--TT-ACAGAT-A--------------A-C-A---AT--AA---TT-A---A-TA---T--CAT--T-TTATCACCC--G-CC--AA---CG----AC-C--TAT--A-TT---AC-GTTTTGAAACAAA--T-CATAC--A-C--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAA-----ACAA---AAA-----A-TTACAAGTAATG-----T----T---A-T-G------GA--------AG---T-----TTTTG---TCTG-T---TTAT-G-GAACT-AT-AA-TAATAA-TATT---GC---A----AA---GTCTGTAGAAAA-T-ACAAA--CATATGTTGATGA--ATACAC-G-T---------CAGT-GT-ATA-T------AC-AACAT-AATTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---T-ATT-------AA--------TTTCTTTG-T--TC-TTGTA-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-A-ATTCAT-CAGTACA-ACATAA---G-AC-A-ATT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTG-TAA--CCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTATTAC---TTAGAT---GATTTGTTTGATCGCGACCGTCCC--AAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC----------------ATCGA-ATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TCCCCT-G-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-ATTTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT----AAT-GTAATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTTA-TTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGC-TGCTCCATTGTTCGATACACCAATCGTTTG-ACAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT---CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTT-ATAAGA-TTGTCAGATGTT--ATC--CCAGTA-------TCGTATGAGAAGGGCAAACAATGTTAGTGGATT-AAATT--GTCCACCC---CTGCGAAACTCC-AGCGTATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---T-GAA-------GAA--ATCA-TTTCTTAA-C--CTATTATATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTA-TTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC--ACATTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA-----GTAAGGTAAG---TAGTAGTAAG--TAAGT--AAA--TG---TTTTATTA---TAGTGGAC---ATGTG-TAATACATTTTACA-ATTA--------------A-C-AA-TAT--AT---TTCA---ACTA---T--AAT--TCTTA-CACCC--G-GCCCAA---CG----GA-CC-TATTTA-TG---TC-ACTTTAAA--CAA--TTCA-AC--A-CAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----A-AA---AAAGA-AAATTTACAAGTAA-A-----TGGGTT---ATT-G-----TGA--------AG---T-AATTTTTTGT--TCTGGT--GATATCA-GAACT-ATAAA-TAA--A-TG-TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAACAATGTTT-GATAA--ATACA--G-T---------CATT-AA-TTACT------ACAAA-AT-AATTG---aaactggcctcacattt
gi|12 : agtaTACAGA--CATGT---GATTAT-ATATT--A-T---------CGTTCAA-TAAC-------AT-TA-AT-A-TTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : attatacgtacatattgtataccttatacaacagaaaatgtctgtgcaggTATACATGTAAT--ACTTGCCA-ACAG-AAGATGT--CAATAAG--TA-----AAT-ATGGTATTATATTGAACTATTG-ACGATATTTG-TATTTCATT--ACA-AT-A-----------------------T--AT---TTCA---A-TA---T--AAT--T-TTA-CACTC--G-GCCCAA---CG----GA-CC-TAT--A-TG---TC-ACTTTAAA--CAA--T-CA-AC--A-CAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATT-----ACTA---CAA-A-TAA-TTA-AATGAT-G-----TAGC-T---T-TCT-----TTA--------AG---T-A--TTTTTG---TAAGAT---TTAT-G-GGATTGATCAA-CAcatctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAG--TACGTTAGAA-GTA---TGTTATT------GAG-AC---ATGTG-TAATTCAGTT-ACGTAT-A--------------A---A--TAT--AT---TT-----A-TA---C--AAT--T-T-A-CACCC--A-TCCCCA---CGGCCCGA-C--TAG--C-TG---TC-AGGCTAAGA--AA--T----GC--A-CACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAAT-----ACCGCGTACATATAAA-TCACCAG-AC-GGAACATCAG-T---A-C-G-----TGACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A---------AAA-TAA--A-TTTTT--ctgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattgaGTAAG---T--AAGTAAG--TAAGT--AAA--TA---TTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-CAA--TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CACCC--G-ACCCAA---CG----GACC--TAT--A-TG---TC-ACTTT--AAACAA--T-CG-AC--A-CAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAA-----ACGA---AAAGA-AAA-TTACAAGTAc
gi|17 : TCGAAA-TTCCGCAATTTTTC--TACACCAATCGTT-GAACAG-TGTTTACACTCGTGTTTTGGCA-TATCGT-CTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTT-A-AAGA-TTTCa
gi|18 : aTG-AC---ATGTGGTAATACATTT-ACA-AT-A--------------AGC-A--TAT--ATGGGTTCA---AATAGGGT--AAT--GGTTA-CACCC--GGCCCCAC---CG----GA-CCCTAT--AGTG---TCCACTTTAAA--CAA--T--A-AC--AACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAA-----AAGA---AAagt
gi|19 : gagaggtaagcatttttgacttTACAGTA-----T--CAG-AAG--T---T--AACTAT----TTTTATTA---T-GTG-AC---ACGT--TAATATGTTT-ACA-AT-ATTTTACATTTCATTA-C-AATTAT--AT---TTCAATTA-TA---T--AATGCT-TTA-CACCCGGG-CCACAAACTCGA---AA-C--CAT--A-TGTCCTC-ACTTTTAAATCAAATT-CATAC--A-CA
gi|2 : gATAAATAAATATATTCTAAT---TATATAGTAAG---T--TAGTAAG--TA-GT--AAA-ATG---TTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-A--TAT--AT---TTCA---A-TA---T--AAT--T-CTATCACCG--G-CCCCAA---CG----AA-C--TA---A-TG---TC-ACTTTAAAAACAA--T-CA-AC--A-CAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAA-----ACAA---AAAGACAAA-TTTCAAGTAT-G-----TGGG-T---A-T-G-----TGA--------AG---T-A--TTTTTG---TC-GGT--ATTAT-A-GAACT-AATAA-TGA--A-TGTTT--GC---A----TATATATCT-TAGAAAAGTTACACA--AATGTTTAAATAG--ATCCA--GCT---------CATT-AA-TTAGT------AC--A-AT-AATTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---T-ATA-------AAA--AT---TTTCTTTG-T--CT-TTGTA-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-A-TTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT--TAA--C-ATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAGT---AGATTGA-TTGTTTG--CGC--CCGG--TCCAAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--CCA------------T----GT-ATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTCCCCT-GGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATC-AATACAGTGATGTT--TTTATAT-CACAAA--TTCA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTT--AATTGAAATGAATTTTTGAAATGA-TGCTCCCAG-GCTCTCCCTCCAAGATTTAGCTAAGTTT-TTGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT--CTAA-A---ATATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG--TCCGCCATTATTCTAT-CACCAATCGTT--GACA--TGTTTA-ACATGTGTT---GCA-TATCGTCTTT------AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTT-ATAAGA-TTTCC---TGT---ATCTGCTAG---AT---GTT-TATGAAAAGGGCAAAAAATG-TAGGAGAT---AATTC-GTCGACC----TTGCGA-ACTCC-AG-GT-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-AA-TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CACCC--G-GCCCAA---CG----GA-CC-TAT--A-TG---TC-ACTTTAAA--CAA--T-CA-AC--A-CAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAgcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGAT-ATG-------AAA--------TTCTTTA-T-------ATC-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCAG-CTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : ---TTTTATTA---TAGTG-GC---ATGTG-TAATACATTT-ACA-AT-ATTT-----------A-C-T--TTTC-AT---TACA---A-TA---T---AT--T-TCA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT--a
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-T-ATA-------GAATTTT---TTTCTTTGTT--CT-TTACA-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC-----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACC-ATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AATT-CCAGTTAAATATGGATT-GTTTG----CG-CCGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTC-CGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCCCCCT-GGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT---------------------CTTGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGAT-ACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-----CCCGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-AA-TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CACCC--G-GCCCAA---CG----GA-CC-TAT--A-TG---TC-ACTTTAAA--CAG--T-CA-ACCCA-CAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAA-----ACAA---AA-GA-AAA-TTACAAGTAA-A-----TGGG-TT--A-T-G-----TGA--------AG---T-A--TTTTTG---TCTGGT--GTTAT-A-GAACT-ATAAA-TAA--A-TGTT---GC---A----A-TATGTCT-TAGAAA---TACAAAC-AATGTT--GATAA--ATACA--G-T---------CATT-AA-TTACT------AC-AA-AT-AATTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-A--TTAT-A----AATA-AATTTCGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAAACAATATT--AAT-AAA---TAC--AGAGTCGTC-AATCTGATTTAGATT-------TA-CATTAAGA----CC--AAT----TTTCA-T---TTATT-------AAA--ATATTTTTCTTTG-TT-CT-TTATA-A-AAGGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-AATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT------AAA-GGCAGG-----ATTCCACA-----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-T-TCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT--TAAC-C-ATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAAT
gi|5 : -TAATACATTT-ACA-AT-ATTTGCATTTCAT--A-CAA--TAT--AT---TTCA---A-TA---T--AAT--T-TTA-CTCCC--G-GCCAAA---CG----GACC--TAA--A-TG---TA-ATTTC--AAGCAA--T-TA-AC--A-CAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT------AATTGCTACAA-------A-TAA-TTG-AATTGT-G-----TGAC-T---T-TCC-----TTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAA-GAATT-ATAAA-TAC--A-T-TTT--GC---A----GCT-TGTCT-TGGGAAA-TTACAAACCAATATT---ATAA--ATACA--G-T----------ATC-AA-TC----------------T-GATTA---AA-TTAa
gi|5 : A--GTACA--G-T---------CATT-AA-TTGCT------AC-AA-AT-AATTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---T-ATACATGTATAAA--ATA--TTCCTTTG-TT-CT-TTATA-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-A-TTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacctaaatgtaatttcaagcaattaacacaataaacaatttctgcgcTCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTA-AAGACTTTCCAG-TGTT-AATTTACTAGAAAATTCGGTT-TATGAAAAGG-CAAACCATGTTAG-GGAT--AAATTTGGTCCA-CCCTTTTGCC-GACTCCAAGCGTTTG-GTCTAAA-AAATc
gi|7 : ---A-T-G-----TGG--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-A-GAACTTATAAAATAA--AATGTTTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTACAAACAAATGTT-GGAAAATCATACAAGG-TTTTACCTCCCATT-AAATTATTCCTCTCAC-AA-ATTAATTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---C-ATT-------AAG--CT---TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : T---TTTTTTTG-TTCCT-TTATA-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctct---CGTACAGTAA--------AGTAAG--TA-------A-ATA---TTTTATTA---TAGTG-AC---ATGTG-TAATACATTT-ACA-AT-A--------------A-C-AA-TAT--AT---TTCA---A-TA---C--AAT--T-TTA-CACCC--G-GCCCAA---CG----GA-CC-TAT--A-TG---TC-ACTTTAAA--CAA--T-CG-AC--A-CAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----A-AA---GAAGA-AAA-TTACAAGTAA-A-----TGAG-TTACG-T-GGCTCCTGA--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AAGAACT-ATAAA-TAA--A-T-TTT--GC---A-----GTATGTCT-TAGAAAA-TTACAAAC-AATATT--GATAA--ATACA--G-T---------CATT-AA-TTACT------AC-AA-AT-AATTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AAT---CACAT-GT------T--TAG-AAGTTTA--T--AAA---------TTA-TA---TACTG-AC---ATGTA-TAATACATCA-ACA-AT-T--------------A-C-AG-TATTGTT---TTCA---T-TA---CCAAA------TA-CACCCG-G-CCCCAC---CG----AC-C--TAT--A-C----TC-ACTTT--GAGCAA--T-CA-AC--A--AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---T-ATG-------CAA--AT------------T--CT-TTATT-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 3333333333333 1111 44444444444444 11 22222222222222222222222222222222222222 111 1 2222222222 111 11 111111111 222222222222222222222 11111111 333333333333333333 2222222222 11111 1111111111 111 11 111 222222222 44444444444 2222222222222222222222222222222222222222222222222 1111 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 222222222 1 1 1 111 1 222222 2 111 2222 1 1 111 22222 11 44444444 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 33 1 1 1 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 55555555 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 888888888 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 2 2 555 555 44 77 3 6 6 4 3 555 3 3 44 77 555 3 3 99 2 77 3 6 44 3 44 44 555 3 0 77 99999 44 666 5 8 4 66666666666666666666666666666666666666 777 7777 222 999 3 4 66 4 4 99 888 4444444444 0 5 111 4 4 4 4 1 99 4 66 00 4 777777777 4 4 444444444444444444444 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 77 8 4 111 555555555 888 77777777777 888 4444444444444444444444444444444444444444444444444 0000 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 3 2 88888 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 111111111 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 44444 88 55555555 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 77 3 5 3 6 3 2 333 3 0 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 33333333 7 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... . . ... ... .. .. . . . . . ... . . .. .. ... . . .. . .. . . .. . .. .. ... . . .. ..... .. ... . . . ...................................... ... .... ... ... . . .. . . .. ... .......... . . ... . . . . . .. . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .. . . ... ......... ... ........... ... ................................................. .... . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... ......... . . . . . . ... . ...... . ... . .... . . . . ... ..... .. ........ . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . . . . . ... . . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........ . . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 9 9 444 444 22 33 1 2 2 0 1 444 1 1 22 33 444 1 1 77 8 33 1 2 22 1 66 66 888 3 1 99 11111 11 444 0 0 0 66666666666666666666666666666666666666 888 0000 222 000 3 0 11 4 4 33 000 5555555555 1 0 444 4 4 4 4 9 00 4 11 66 4 888888888 4 4 444444444444444444444 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 55 0 0 000 777777777 555 55555555555 999 6666666666666666666666666666666666666666666666666 0000 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 9 7 66666 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 888888888 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 77777 33 77777777 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 55 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 00 3 0 3 7 3 0 333 3 7 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000 3 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAAGTAN-G-----TGGGTTA-T-G-------TG-A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGTTT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AA-CCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TGA-TTGTTTG--CGC--CCGG-CCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCGTT-GAC-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A---TC-GTTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GNCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAAGTAN-G-----TGGG-TA-T-G-------TG-A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGTTT--GC---A----ANTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TNC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AA-C-ATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGATATGATTTGTTTG--CGCG-CCGGCCCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACNACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC-ATA-CACCAATCGTTGGAC-AGTGTTTA-ACACGTGTT---GCA-TATCGTCCTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAGAA---T--GTTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAAT-A---AT---T---AA-T---A---T--CAT--T-TTATCACCC-G--C-CAA---CG-A-CCTA-T--A--TT---A-CGT-TTT-GAAACAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAA-----ACAA---AAA-----A-TTACAAGTAATG-----T----TA-T-G--------G-A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TATT---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT--G-ATGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---TATT-------AA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AA-CCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--GATTTGTTTGATCGCGACCG--TCCCAAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGACAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA---TC-G--TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---TGAA-------GAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAAT-AT--AT---TTC-AACT---A---T--AAT--TCTTA-CACCC-GGCC-CAA---CGGA-CCTA-TTTA--TG---T-CAC-TTT-AAA-CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----A-AA---AAAGA-AAATTTACAAGTAA-A-----TGGGTTATT-G-------TG-A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG-TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TATT--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCT-GTGCAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACTC-GGCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAA-CAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATT-----ACTA---CAA-A-TAA-TTA-AATGAT-G-----TAGC-TT-T-C-------TTTA--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--AT-AT--AT---TT---A-T---A---C--AAT--T-T-A-CACCC-ATCC-CCA---CGGC-CCGACT--AGCTG---T-CAG-GCT-AAGA-AA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAAT-----ACCGCGTACATATAAA-TCACCAG-AC-GGAACATCAG-TA-C-G-------TG-ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTTTT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GACC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAA-----ACGA---AAAGA-AAA-TTACAAGTAc
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCGTTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-Ta
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCAT-AT--ATGGGTTCAAA-T---AGGGT--AATG-G-TTA-CACCCGGCCC-CAC---CGGACCCTA-T--AG-TG---TCCAC-TTT--AAACAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAA-----AAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTAT--AT---TTC-AA-TTATA---T--AATGCT-TTA-CACCCGGGCCACAAACTCGAA-ACCA-T--A--TGTCCT-CACTTTT-AAATCAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------AC-AT-AT--AT---TTC-AA-T---A---T--AAT--T-CTATCACCG-GCCC-CAA---CGAA--CTA----A--TG---T-CAC-TTTAAAAACAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAA-----ACAA---AAAGACAAA-TTTCAAGTAT-G-----TGGG-TA-T-G-------TG-A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGTTT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTAA-ATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-----------A-AT-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---TATA-------AAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-C-ATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TGA-TTGTTTG--CGC--CCGG--TCCAAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCGTT-GAC-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A---T--GTTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----ACAA---AAAGA-AAA-TTACAgcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGATATG-------AAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAAT-AT--AT---TTC-AA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-TATA-------GAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAA-CCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATTGTTTG--CGC---CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAA-----AC-A---AAAGA-AAA-TTACAAGTAA-A-----TGGGTTA-T-G-------TG-A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG-TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---TA--CAGAGTCGTCAA-TCTGATTTAGA-------TTTA-CATTAAGA----CC--AAT----TTTCATT---TATT-------AAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACC-ATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CTCCC-GGCC-AAA---CGGA-CCTA-A--A--TG---T--AA-TTT-CAAGCAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT------AATTGCTACAA-------A-TAA-TTG-AATTGT-G-----TGAC-TT-TCC-------TT-A--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-TTT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT----ATAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : AT-AAA-CA-A-TTTCT-G-CGCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTG-TT-CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacctaaatgtaatttcaagcaattaacaca-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAGAAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-T-G-------TG-G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGTTTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTG-G-AAAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---CATT-------AAG--C---T--TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---C--AAT--T-TTA-CACCC-GGCC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAA-----A-AA---GAAGA-AAA-TTACAAGTAA-A-----TGAGTTA-C-GTGGCTCCTG-A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-TTT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAGT-ATTGTT---TTC-AT-T---A---CCAAA------TA-CACCC-GGCC-CCA---CCGA-CCTA-T--A--C----T-CAC-TTT--GAGCAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---TATG-------CAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 3333333333333 1111 44444444444444 11 1111111 333333333333333333333333333 111 1 1111 1111111111 111 11 111111111 222222222222222222222 11111111 333333333333333333 2222222222 11111 1111111111 111 11 111 222222222 44444444444 2222222222222222222222222222222222222222222222222 1111 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 1111 1 1 1 111 1 222222 2 111 2222 1 1 111 2222 1 11 11 22 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 11 1 1 111 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 44444444444 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 888888888 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 2 2 555 555 44 77 3 6 3 3 3 555 3 3 44 77 555 3 3 99 2 77 3 6 44 3 44 44 555 3 0 77 999999 888 4 777 8888888 333 4 000000000000000000000000000 777 7777 222 999 3 4 66 4 4 2222 666 9999999999 4 666 4 4 4 4 1 99 4 66 00 4 777777777 4 4 444444444444444444444 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 77 8 4 111 555555555 888 77777777777 888 4444444444444444444444444444444444444444444444444 0000 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 3 2 66666 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 9999 2 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 4444 3 88 88 77 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 88 3 3 666 6 3 2 333 3 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 11111111111 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... . . ... ... .. .. . . . . . ... . . .. .. ... . . .. . .. . . .. . .. .. ... . . .. ...... ... . ... ....... ... . ........................... ... .... ... ... . . .. . . .... ... .......... . ... . . . . . .. . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .. . . ... ......... ... ........... ... ................................................. .... . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... .... . . . . . . . ... . ...... . ... . .... . . . . ... .... . .. .. .. . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . ... . . . ... . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........... . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 9 9 444 444 22 33 1 2 1 1 1 444 1 1 22 33 444 1 1 77 8 33 1 2 22 1 66 66 888 3 1 99 555555 888 0 000 9999999 888 4 222222222222222222222222222 888 0000 222 000 3 0 11 0 0 0000 333 2222222222 4 222 4 4 4 4 9 00 4 11 66 4 888888888 4 4 444444444444444444444 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 55 0 0 000 777777777 555 55555555555 999 6666666666666666666666666666666666666666666666666 0000 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 9 7 33333 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 8888 5 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 0000 3 33 33 00 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 22 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 33 3 3 777 7 3 0 333 3 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000000 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TACAAGTAAG-----TGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCG-CCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TACAAGTANG-----TGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGGCCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAAT-A---AT---T---AA-T---A---T--CAT--T-TTATCACCC-G---C-CAA---CG-A-CCTA-T--A--TT---A-CGT-TTT-GAAACAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAAACAA---AAA-----A-T---TACAAGTAA------TG--TTA-TG--------G---------A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TAT--T---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT--G-ATGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---TATT-------AA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AACCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--G-ATTTGTTTGATCGCGACCG-TCCCAAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA----TCG---TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---TGAA-------GAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAAT-AT--AT---TTC-AACT---A---T--AAT--TCTTA-CACCC-GG-CC-CAA---CGGA-CCTA-TTTA--TG---T-CAC-TTT-AAA-CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---AAAGA-AAATT---TACAAGTAAA-----TGGGTTATTG-------TG---------A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG---TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TAT--T--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCT-GTGCAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACTC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAA-CAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATTACTA---CAA-A-TAA-T---TA-AATGATG-----TAGCTTT-CT-------TT---------A--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--AT-AT--AT---TT---A-T---A---C--AAT--T-T-A-CACCC-AT-CC-CCA---CGGC-CCGACT--AGCTG---T-CAG-GCT-AAGA-AA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAATACCGCGTACATATAAA-T---CACCAG-ACGGAACATCAG-TA-CG-------TG---------ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTT--TT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GA-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAAACGA---AAAGA-AAA-T---TACAAGTAc
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCG-TTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-Ta
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCAT-AT--ATGGGTTCAAA-T---AGGGT--AATG-G-TTA-CACCC-GGCCC-CAC---CGGACCCTA-T--AG-TG---TCCAC-TTT--AAACAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAAAAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTAT--AT---TTC-AA-TTATA---T--AATGCT-TTA-CACCCGGG-CCACAAACTCGAA-ACCA-T--A--TGTCCT-CACTTTT-AAATCAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACA-T-AT--AT---TTC-AA-T---A---T--AAT--T-CTATCACCG-GC-CC-CAA---CGAA--CTA----A--TG---T-CAC-TTTAAAAACAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAAACAA---AAAGACAAA-T---TTCAAGTATG-----TGGG-TA-TG-------TG---------A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGT--TT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTAA-ATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-----------A-AT-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---TATA-------AAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-CATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TG-ATT-GTTTG--CGC--CCGG-TCCAAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCG-TTGA-C-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A----T-G-TTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TACAgcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGATATG-------AAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAAT-AT--AT---TTC-AA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-TATA-------GAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATT-GTTTG--CGC--CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAAAC-A---AAAGA-AAA-T---TACAAGTAAA-----TGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG---TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---TA--CAGAGTCGTCAA-TCTGATTTAGA-------TTTA-CATTAAGA----CC--AAT----TTTCATT---TATT-------AAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACCATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CTCCC-GG-CC-AAA---CGGA-CCTA-A--A--TG---T--AA-TTT-CAAGCAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT----------------------AA-TTGCTACAAATAAT-----TGAATTG-TG-------TGACTTTCCTTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-T--TT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT----ATAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : -TAAA-TGTAATT--TC---A----AGCA---AT-TAACACA---AT-AAA-CA-A-TTTCT-G-CGCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTG-TT-CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacc-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAG-AAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-TG-------TG---------G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGT--TTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTG-G-AAAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---CATT-------AAG--C---T--TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---C--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---GAAGA-AAA-T---TACAAGTAAA-----TGAGTTA-CGTGGCTCCTG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-T--TT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAGT-ATTGTT---TTC-AT-T---A---CCAAA------TA-CACCC-GG-CC-CCA---CCGA-CCTA-T--A--C----T-CAC-TTT--GAGCAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---TATG-------CAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 3333333333333 1111 44444444444444 22 11 333333333333333333333333333 111 1 1111 1111111111 111 11 111111111 222222222222222222222 11111111 333333333333333333 2222222222 11111 1111111111 111 11 111 222222222 44444444444 2222222222222222222222222222222222222222222222222 1111 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 1111 1 1 1 111 1 222222 2 111 2222 1 1 111 2222 1 11 11 11 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 11 1 1 111 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 44444444444 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 888888888 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 2 2 555 555 44 77 3 6 3 3 3 555 3 3 44 77 555 3 3 33 77 3 6 44 3 44 44 555 3 0 77 999999 888 4 777 777 66 333 55 000000000000000000000000000 777 7777 222 999 3 4 66 4 4 2222 666 9999999999 4 666 4 4 4 4 1 99 4 66 00 4 777777777 4 4 444444444444444444444 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 77 8 4 111 555555555 888 77777777777 888 4444444444444444444444444444444444444444444444444 0000 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 3 2 66666 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 9999 2 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 4444 3 88 88 77 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 88 3 3 666 6 3 2 333 3 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 11111111111 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... . . ... ... .. .. . . . . . ... . . .. .. ... . . .. .. . . .. . .. .. ... . . .. ...... ... . ... ... .. ... .. ........................... ... .... ... ... . . .. . . .... ... .......... . ... . . . . . .. . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .. . . ... ......... ... ........... ... ................................................. .... . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... .... . . . . . . . ... . ...... . ... . .... . . . . ... .... . .. .. .. . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . ... . . . ... . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........... . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 9 9 444 444 22 33 1 2 1 1 1 444 1 1 22 33 444 1 1 55 33 1 2 22 1 66 66 888 3 1 99 555555 888 0 000 000 33 888 11 222222222222222222222222222 888 0000 222 000 3 0 11 0 0 0000 333 2222222222 4 222 4 4 4 4 9 00 4 11 66 4 888888888 4 4 444444444444444444444 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 55 0 0 000 777777777 555 55555555555 999 6666666666666666666666666666666666666666666666666 0000 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 9 7 33333 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 8888 5 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 0000 3 33 33 00 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 22 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 33 3 3 777 7 3 0 333 3 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000000 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCG-NCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT-AAAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-GTGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCG-CCCCAAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAAT-A---AT---T---AA-T---A---T--CAT--T-TTATCACCC-G---C-CAA---CG-A-CCTA-T--A--TT---A-CGT-TTT-GAAACAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAAACAA---AAA-----A-T---TAC---AAGTAA--TG--TTA-TG--------G---------A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TAT--T---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT--G-ATGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---TATT-------AA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AACCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--G-ATTTGTTTGATCGCGACCG-TCCCAAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA----TCG---TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---TGAA-------GAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAAT-AT--AT---TTC-AACT---A---T--AAT--TCTTA-CACCC-GG-CC-CAA---CGGA-CCTA-TTTA--TG---T-CAC-TTT-AAA-CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---AAAGA-AAATT---TAC---AAGTAA-ATGGGTTATTG-------TG---------A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG---TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TAT--T--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCT-GTGCAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACTC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATTACTA---CAA-A-TAA-T---T-----AAATGATGTAGCTTT-CT-------TT---------A--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--AT-AT--AT---TT---A-T---A---C--AAT--T-T-A-CACCC-AT-CC-CCA---CGGC-CCGACT--AGCTG---T-CAG-GCT-AAGA-AA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAATACCGCGTACATATAAA-T---CACCAGACGGAACATCAG-TA-CG-------TG---------ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTT--TT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GA-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAAACGA---AAAGA-AAA-T---TAC---AAGTAA-c
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCG-TTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-T
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCAT-AT--ATGGGTTCAAA-T---AGGGT--AATG-G-TTA-CACCC-GGCCC-CAC---CGGACCCTA-T--AG-TG---TCCAC-TTT--AAACAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAAAAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTAT--AT---TTC-AA-TTATA---T--AATGCT-TTA-CACCCGGG-CCACAAACTCGAA-ACCA-T--A--TGTCCT-CACTTTT-AAATCAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACA-T-AT--AT---TTC-AA-T---A---T--AAT--T-CTATCACCG-GC-CC-CAA---CGAA--CTA----A--TG---T-CAC-TTTAAAAACAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAAACAA---AAAGACAAA-T---TTC---AAGTAT-GTGGG-TA-TG-------TG---------A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGT--TT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTAA-ATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-----------A-AT-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---TATA-------AAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-CATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TG-ATT-GTTTG--CGC--CCG-GTCCAAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCG-TTGA-C-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A----T-G-TTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---Agcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGATATG-------AAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAAT-AT--AT---TTC-AA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-TATA-------GAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATT-GTTTG--CGC--CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAAAC-A---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG---TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---TA--CAGAGTCGTCAA-TCTGATTTAGA-------TTTA-CATTAAGA----CC--AAT----TTTCATT---TATT-------AAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACCATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAAT-AT--AT---TTC-AA-T---A---T--AAT--T-TTA-CTCCC-GG-CC-AAA---CGGA-CCTA-A--A--TG---T--AA-TTT-CAAGCAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT----------------------AA-TTGCTAC---AAATAA-TTGAATTG-TG-------TGACTTTCCTTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-T--TT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT----ATAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : -TAAA-TGTAATT--TC---A----AGCA---AT-TAACACA---AT-AAA-CA-A-TTTCT-G-CGCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTG-TT-CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacc-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAG-AAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-TG-------TG---------G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGT--TTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTG-G-AAAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---CATT-------AAG--C---T--TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-AT--AT---TTC-AA-T---A---C--AAT--T-TTA-CACCC-GG-CC-CAA---CGGA-CCTA-T--A--TG---T-CAC-TTT--AAACAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---GAAGA-AAA-T---TAC---AAGTAA-ATGAGTTA-CGTGGCTCCTG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-T--TT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAGT-ATTGTT---TTC-AT-T---A---CCAAA------TA-CACCC-GG-CC-CCA---CCGA-CCTA-T--A--C----T-CAC-TTT--GAGCAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---TATG-------CAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 3333333333333 1111 44444444444444 11 333333333333333333333333333 111 1 1111 1111111111 111 11 111111111 222222222222222222222 11111111 333333333333333333 2222222222 11111 1111111111 111 11 111 222222222 44444444444 2222222222222222222222222222222222222222222222222 1111 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 1111 1 1 1 111 1 222222 2 111 2222 1 1 111 2222 1 11 11 1 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 11 1 1 111 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 44444444444 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 888888888 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 5 555 555 44 7777 6 3 3 555 3 3 3 44 77 555 3 3 77 3 77 3 6 44 3 44 44 555 3 0 77 999999 888 4 777 777 33 333 55 000000000000000000000000000 777 7777 222 999 3 4 66 4 4 2222 666 9999999999 4 666 4 4 4 4 1 99 4 66 00 4 777777777 4 4 444444444444444444444 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 77 8 4 111 555555555 888 77777777777 888 4444444444444444444444444444444444444444444444444 0000 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 3 2 66666 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 9999 2 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 4444 3 88 88 1 3 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 88 3 3 666 6 3 2 333 3 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 11111111111 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... . ... ... .. .... . . . ... . . . .. .. ... . . .. . .. . . .. . .. .. ... . . .. ...... ... . ... ... .. ... .. ........................... ... .... ... ... . . .. . . .... ... .......... . ... . . . . . .. . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .. . . ... ......... ... ........... ... ................................................. .... . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... .... . . . . . . . ... . ...... . ... . .... . . . . ... .... . .. .. . . . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . ... . . . ... . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........... . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 7 444 444 22 0000 2 1 1 444 1 1 1 22 33 444 1 1 33 1 33 1 2 22 1 66 66 888 3 1 99 555555 888 0 000 000 00 888 11 222222222222222222222222222 888 0000 222 000 3 0 11 0 0 0000 333 2222222222 4 222 4 4 4 4 9 00 4 11 66 4 888888888 4 4 444444444444444444444 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 55 0 0 000 777777777 555 55555555555 999 6666666666666666666666666666666666666666666666666 0000 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 9 7 33333 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 8888 5 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 0000 3 33 33 0 3 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 22 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 33 3 3 777 7 3 0 333 3 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000000 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGNCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAAT-A-A--T---T--AA-T---A---T--CAT--T-TTATCACCC-G--C-CAA---C-G-ACC-TA-T--A--TT---AC-GT-TTTG-AAA-CAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAAACAA---AAA-----A-T---TAC---AAGTAA--TG--TTA-TG--------G---------A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TAT--T---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT--G-ATGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---TATT-------AA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AACCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--G-ATTTGTTTGATCGCGACCGTCCC-AAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA----TCG---TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---TGAA-------GAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAAT-ATA--T---TTCAACT---A---T--AAT--TCTTA-CACCC-GGCC-CAA---C-GGACC-TA-TTTA--TG---TC-AC-TTT--AAA-CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---AAAGA-AAATT---TAC---AAGTAA-ATGGGTTATTG-------TG---------A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG---TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TAT--T--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCT-GTGCAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACTC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATTACTA---CAA-A-TAA-T---T-----AAATGATGTAGCTTT-CT-------TT---------A--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--AT-ATA--T---TT--A-T---A---C--AAT--T-T-A-CACCC-ATCC-CCA---C-GGCCC-GACT--AGCTG---TC-AG-GCT--AAG-AAA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAATACCGCGTACATATAAA-T---CACCAGACGGAACATCAG-TA-CG-------TG---------ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTT--TT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GACC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAAACGA---AAAGA-AAA-T---TAC---AAGTAA-c
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCG-TTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-T
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCAT-ATA--TGGGTTCAAAT---AGGGT--AAT--GGTTA-CACCC-GGCC-CCA---CCGGACCCTA-T--AG-TG---TCCAC-TTT--AAA-CAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAAAAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTATA--T---TTCAA-TTATA---T--AATGCT-TTA-CACCCGGGCCACAAACTC-GAAAC-CA-T--A--TGTCCTC-ACTTTT--AAATCAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------AC-AT-ATA--T---TTCAA-T---A---T--AAT--T-CTATCACCG-GCCC-CAA---C-GAA-C-TA----A--TG---TC-AC-TTTAAAAA-CAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAAACAA---AAAGACAAA-T---TTC---AAGTAT-GTGGG-TA-TG-------TG---------A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGT--TT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTAA-ATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-----------A-AT-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---TATA-------AAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-CATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TG-ATT-GTTTG--CGC--CCGGTCC-AAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCG-TTGA-C-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A----T-G-TTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---Agcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGATATG-------AAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAAT-ATA--T---TTCAA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-TATA-------GAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATT-GTTTG--CGC--CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAAAC-A---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG---TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---TA--CAGAGTCGTCAA-TCTGATTTAGA-------TTTA-CATTAAGA----CC--AAT----TTTCATT---TATT-------AAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACCATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CTCCC-GGCC-AAA---C-GGACC-TA-A--A--TG---TA-AT-TTC--AAG-CAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT----------------------AA-TTGCTAC---AAATAA-TTGAATTG-TG-------TGACTTTCCTTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-T--TT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT----ATAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : -TAAA-TGTAATT--TC---A----AGCA---AT-TAACACA---AT-AAA-CA-A-TTTCT-G-CGCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTG-TT-CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacc-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAG-AAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-TG-------TG---------G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGT--TTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTG-G-AAAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---CATT-------AAG--C---T--TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---C--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---GAAGA-AAA-T---TAC---AAGTAA-ATGAGTTA-CGTGGCTCCTG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-T--TT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAGT-ATTGTT---TTCAT-T---A---CCAAAT------A-CACCC-GGCC-CCA---C-CGACC-TA-T--A--C----TC-AC-TTT--GAG-CAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---TATG-------CAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 3333333333333 1111 44444444444444 11 333333333333333333333333333 111 1 1111 1111111111 111 11 111111111 222222222222222222222 11111111 333333333333333333 2222222222 11111 1111111111 111 11 111 222222222 44444444444 2222222222222222222222222222222222222222222222222 1111 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 1111 1 1 1 111 1 222222 2 111 2222 1 1 111 2222 1 11 11 1 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 11 1 1 111 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 44444444444 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 888888888 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 5 555 555 44 7777 6 3 3 555 3 3 3 44 77 555 3 3 77 3 77 3 6 44 3 44 44 555 3 0 77 999999 888 4 777 777 33 333 55 000000000000000000000000000 777 7777 222 999 3 4 66 4 4 2222 666 9999999999 4 666 4 4 4 4 1 99 4 66 00 4 777777777 4 4 444444444444444444444 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 77 8 4 111 555555555 888 77777777777 888 4444444444444444444444444444444444444444444444444 0000 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 3 2 66666 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 9999 2 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 4444 3 88 88 3 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 88 3 3 666 6 3 2 333 3 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 11111111111 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... . ... ... .. .... . . . ... . . . .. .. ... . . .. . .. . . .. . .. .. ... . . .. ...... ... . ... ... .. ... .. ........................... ... .... ... ... . . .. . . .... ... .......... . ... . . . . . .. . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .. . . ... ......... ... ........... ... ................................................. .... . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... .... . . . . . . . ... . ...... . ... . .... . . . . ... .... . .. .. . . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . ... . . . ... . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........... . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 7 444 444 22 0000 2 1 1 444 1 1 1 22 33 444 1 1 33 1 33 1 2 22 1 66 66 888 3 1 99 555555 888 0 000 000 00 888 11 222222222222222222222222222 888 0000 222 000 3 0 11 0 0 0000 333 2222222222 4 222 4 4 4 4 9 00 4 11 66 4 888888888 4 4 444444444444444444444 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 55 0 0 000 777777777 555 55555555555 999 6666666666666666666666666666666666666666666666666 0000 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 9 7 33333 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 8888 5 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 0000 3 33 33 3 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 22 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 33 3 3 777 7 3 0 333 3 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000000 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAAT-A-A--T---T--AA-T---A---T--CAT--T-TTATCACCC-G--C-CAA---C-G-ACC-TA-T--A--TT---AC-GT-TTTG-AAA-CAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAAACAA---AAA-----A-T---TAC---AAGTAA--TG--TTA-TG--------G---------A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TAT--T---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT--G-ATGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--TAC-TAGA----TC-G-TTCAATC--GATTT--TGTTTA-CATTAAG-----CC--A------TTTC--T---TATT-------AA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AACCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--G-ATTTGTTTGATCGCGACCGTCCC-AAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA----TCG---TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATTT-A-C-AAA---GA----GGGT-ATA-A-TCTAA----AATTAAAT-TTTGGTATTGAGATACACC--TAT----TTT-G-T---TGAA-------GAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCTG-TTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAAT-ATA--T---TTCAACT---A---T--AAT--TCTTA-CACCC-GGCC-CAA---C-GGACC-TA-TTTA--TG---TC-AC-TTT--AAA-CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---AAAGA-AAATT---TAC---AAGTAA-ATGGGTTATTG-------TG---------A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG---TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TAT--T--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCT-GTGCAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---TA-------------A-TTTGATTT-AA--A----TCTG-CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACTC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATTACTA---CAA-A-TAA-T---T-----AAATGATGTAGCTTT-CT-------TT---------A--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : --TAGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--AT-ATA--T---TT--A-T---A---C--AAT--T-T-A-CACCC-ATCC-CCA---C-GGCCC-GACT--AGCTG---TC-AG-GCT--AAG-AAA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAATACCGCGTACATATAAA-T---CACCAGACGGAACATCAG-TA-CG-------TG---------ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTT--TT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : ACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GACC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAAACGA---AAAGA-AAA-T---TAC---AAGTAA-c
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCG-TTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-T
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCAT-ATA--TGGGTTCAAAT---AGGGT--AAT--GGTTA-CACCC-GGCC-CCA---CCGGACCCTA-T--AG-TG---TCCAC-TTT--AAA-CAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAAAAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTATA--T---TTCAA-TTATA---T--AATGCT-TTA-CACCCGGGCCACAAACTC-GAAAC-CA-T--A--TGTCCTC-ACTTTT--AAATCAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------AC-AT-ATA--T---TTCAA-T---A---T--AAT--T-CTATCACCG-GCCC-CAA---C-GAA-C-TA----A--TG---TC-AC-TTTAAAAA-CAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAAACAA---AAAGACAAA-T---TTC---AAGTAT-GTGGG-TA-TG-------TG---------A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGT--TT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTAA-ATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-----------A-AT-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAT-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-C-TTAAG-----AC--AAT----TTTCA-T---TATA-------AAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-CATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TG-ATT-GTTTG--CGC--CCGGTCC-AAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCG-TTGA-C-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A----T-G-TTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---Agcgtac
gi|22 : --A-T-AAA---TGTACAGAATCATC-AATCTGATTT-AA--A--A-TTTA-C-TTAAGT----CC--AAT----T--CA-TAGATATG-------AAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAAT-ATA--T---TTCAA-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---TGC----AGTCATCAA-TCTGATTTAGA-------TTTA-CATTAAC-----CC--AGTCCAATTTCA-TAA-TATA-------GAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATT-GTTTG--CGC--CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAAAC-A---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG---TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---TA--CAGAGTCGTCAA-TCTGATTTAGA-------TTTA-CATTAAGA----CC--AAT----TTTCATT---TATT-------AAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCAG-ATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACCATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CTCCC-GGCC-AAA---C-GGACC-TA-A--A--TG---TA-AT-TTC--AAG-CAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT----------------------AA-TTGCTAC---AAATAA-TTGAATTG-TG-------TGACTTTCCTTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-T--TT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT----ATAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : -TAAA-TGTAATT--TC---A----AGCA---AT-TAACACA---AT-AAA-CA-A-TTTCT-G-CGCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---TAC----AGT-ATC-AATCTGATTA-AATTA----------ACTAAA-----CC--AAT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTG-TT-CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-CT--CCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAAG-CAGG-----ATTCCACA-----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacc-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAG-AAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-TG-------TG---------G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGT--TTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTG-G-AAAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---TA--CAGAG---CC-A-TCTAATTT-GA-AA--T-TTTA-----AAG----------AT----TTTTACC---CATT-------AAG--C---T--TTCTTTTA-T--Ctcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---C--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---GAAGA-AAA-T---TAC---AAGTAA-ATGAGTTA-CGTGGCTCCTG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-T--TT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAGT-ATTGTT---TTCAT-T---A---CCAAAT------A-CACCC-GGCC-CCA---C-CGACC-TA-T--A--C----TC-AC-TTT--GAG-CAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGTAC-CAGAATCATC-A-TCTGATTA-AA--A-----TTA-CTTTAAG-----TCCAAAT----TTATA-A---TATG-------CAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
blockSeqs : ACTTGCCA T AGATGTC T ACGTTAGAAG G G G G T TTTC T TTTTACATTTCATT T GT GGG C TAT GGG CA GCT T G A ACT C C C TT GC TCC C T AA T AT T T CC A TA CG GTA T TA CCGCGT TAT T TGC CAG TG GGT TT TGACTTTCCTTA TAT AAT GTT TGG C T . A A GTAA TTT CCCACCCCAG . GTT A C . A T TA T TC AG C TTTACCTCC G A TATATTATCGTTC . T CATTAATA TTC A C TGTCGGGTTTGGTCCTTT GGTTTTCTTT A . G TATG A A A . A T CAGCTTGTT . AAT A A GA A A ATG TACAGAATC AA AATTAAAT GTA CCAGTCCAATTTCATAATATAGAATTTT TTC A AT C A ACACAT A GGGGA TCCATC GG T T C G TTA T TA T G A TCCG . CATACCA G AGCAAT AAGACG AT GGCCAATGGC C . . ACAGTGAAATGGAGATATTATGCGCGCGCA G G GT CT GTAATAGATC GCT G A A AGTC AT AG GT C AA C A C GTCA C G G C T . T CA T CAATC T AT T CAGA A . T T AGT ATGG . . . C A A . AT C A T GTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNT C . T CGTGAGTACTGA A TG C C CA C T G T . AT . . TGA AC A A . T ATCAATACAGTGATGTTTT C A C ACTTAT GACT TA TGGC CC C T A . AA T . ACTG T AT T AATTG C C G CA A C C A A ACG A T T T T G GTC C A G CC . . . G A T . . . . TT T . T . AC G C C TTG . ACC AGC . C TGT G TCAATAT . T TTTA TG T TTTG G . CG TTTGT T C C A . T A TG AAAATTCGGT G . . A TG C TT GA A C TT . C C . . .
blockSeqs : CTAATTAT . AGTA T AAGTAAA A . . . . T . TTTACTTTTCATT . . . A . . . TC . . . . . . . . G . . . . . . . . . . . . . . A CTA GAC . . . CA GCT C TGACCGTCCCT . TA T G A . . . . AT T AAT . TT . . . . T T . . . . . . . TTCCTCTCACA . . . . . . AG TAT . . . CT . . . . A T TTGAG . CA . C T . . . TCAGAGTC AA TGATTAT CA CCAATTTCAATTATACATGTATAAAATA TT . AA . . TA T TG . G A A C T . . A . T A ACA . A A A AA . . . . . ATATTAAGGTATTTTGC A . T T AGTTACTAC TTG . T . . . TT G . . . . C T C G G T . . T C . AATT . T T GAGA A . T . AG TG . . . . . A . . . . . CATGTATATTTAATCGATT C . T CATTGA A TT C . A T . G T . A . . GA . . . . T CT C A T CTA TA A GC CT G T . . A T . A C CC T TTGA . C . C A . . A . C . . . . T A . . . C . . T . . . AGT . C T . CA . . . G . GT G . . . A . C A . . . TA ATGT . . . . C . . CG . . T . . .
blockSeqs : AATC . AGTT T AGTAAAA A . . . . . . TTTGCATTTCAT . . . . . . . GG . . . . . . . . . . . . . . . . . . . . . . . . CGA GA . . . A GGT C TGGCTCCTGA . A . G A . . . . TT T ATA . TT . . . . T T . . . . . . . CTACAA . . . . . . GG T . . . G . . . . A C TCTG . . . A G . . . CCAGAATC AA AAATTA CA ATACACCTATTTTGTTGAAGAAATCA TT . A . . T . A . G . G C T . . A . A G TCC . A A A A . . . . . AACATGTTTTGGG A . C T GTTG T . C . . . T A . . . . C T . . . . . . T C . AT . T T GAG A . . . . . . TGATGT . TA C . . C . G T . T . . TA . . A . CA T A G T A T . . . . . A . A T . . . . . . . T T . . . . . . . .
blockSeqs : . TC T TTATAAA A . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AGA GA . . . G AAT T TGA . A . A . . . . . GT T AGC . TT . . . . T T . . . . . . . CTACA . . . . . . GG C . . . T . . . . C A TTTG . . . A A . . . CAGAGTC AA TGAAAT CA ACCAATTTTCATTTATTAAAATATT TT . C . . T . G . G . A C T . . A . A A TGC . A A G A . . . . . TAATGGTTTGGG A . T T GTTG C . T . . . A G . . . . .
blockSeqs : . TT T TAACTA G . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . CAA GA . . . A AGT T TTA . A . G . . . . . GT T AAG . T . . . . T T . . . . . . . CTACA . . . . . . GA G . . . T . . . . T A TTT . . . A . . . . CAGTC A TAAAA CT TCCAAATTTATAATATGCAAAT C . A . . T . G . . . T C T . . A . A G TCT . . A G A . . . . . CAATGGTTTTGA A . . T GTTG T . T . . .
blockSeqs : . A . AAA A . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . CAA GA . . . T AG T TGA . A . G . . . . . G T AA . T . . . . T G . . . . . . . CTACA . . . . . . GG G . . . T . . . . A C TTG . . . C . . . . CAGAG A TAAA C ACAATTTTCATTATAAAAAT T . A . . T . G . . . . . T . . A TC . . . G A . . . G . T .
blockSeqs : . AAA . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA GA . . . A GG T TGA . A . G . . . . . G T AG . . . . . . . T . . . . . . . GTAC . . . . . T . . . C . . . . A A TTG . . . A . . . . GGGT A TAGA C TCCAATTCATAGATATGAAA T . A . . A . G .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . CA A . . . C TGG . A . . . . . . . T T G . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . CAGT A TAGA A ATTTTTACCCATTAAGCT T . T . . T . G .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA . . . . . . . T . . . . . . A AAAA . T
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : AGTC***** **** ** ** GA* A* GGT TGA************************ A*** G** ** GT** T** TT* T* ** CTACA**************** GG**************** T**** **** A* ** *** CAGAGTC** TAAA******* NCAATTTTCATTATNAAAAT***************************** T****** G***** G* A* TCC** T* GTTG************ G* C**
originalCons : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TAC-CAGAGTCATC-A-TCTGATTT-GATTA--T-TTTA-CATTAAG-----CC--AAT----TTTCA-T---TATN-------AAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
finalCons : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAGTC-----AGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAAT-ATA--T---TTCAA-T---A---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT--AAA-CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAAA-TGGGTTA-CGTGA------------------------AG---TA---TTTTTG---TCTGGTG--TTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAATT-AC-AAA-CA-A-TGTTT-G-ATAA--ATACA--G-T---------CAT-TAA-TTACTACA----------------A-AT-AA--------TTG---AA-TTAT-GTGG----------------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GTT----GTAAG-AA-TTAT-A----AATAA-ATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---TACAGAGTC--ATC-A-TCTGATTTAAA-------TTTA-CATTAAGNCAATTTTCATTATNAAAAT-----------------------------TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGACT------AA-TAG-----AAA------ATGTTTCTCAG-ATTC-ATTTCATTCGGTTCACACATAA---G-ACAAA-TT-CTATCCTCGATTGGTTCTCC--TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTTT-TTCTACGTTG------------TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 222222222 3333333333333 1111 44444444444444 11 333333333333333333333333333 111 1 1111 1111111111 111 11 111111111 111111111111111111111 11111111 333333333333333333 2222222222 11111 1111111111 111 1111 1111111111 11 11111 1111111 22222222222222222222222222222222222222222222222222 1 1111111 111111 111111 1 111 2222222 111111 222222 2222222222 333333333333333333333333333333333333 2222222222222222 1111 11 11 11 111 1111 1 1 1 111 1 222222 2 111 2222 1 1 111 2222 1 11 11 1 222 11 1 1 000000000000000000000000000000000000000000000000000 1 33333333333333 1 11 1 1 11 1 1 111 11 1 777777777777777777777777 111111 11111 111 2222 1 1 11 1 2222 11 222222 1 22 1 22222 1 1 222 1 11 1 11 1 1 1 1 222 11 222 111 11 1 1 111 1 1 222 1 222 1 222 1 4444444 11 1 2222 11 1 11111 1 11 22222 1 1 1 11 44444444444 1 1 22 11 111 1 111 1 1 1 11 1
lowQualScore : 0 4444444444 5 222222222 3 7777777777777 5 3 2 2 2 1111 2 77777777777777 2 33 555 555 5 555 44 7777 6 3 3 555 3 3 3 44 77 555 3 3 3 77 77 3 6 44 3 44 44 555 3 0 77 999999 888 4 777 777 33 2 55 000000000000000000000000000 777 7777 222 999 3 4 66 4 4 2222 666 9999999999 4 666 4 4 4 4 1 4 4 4 66 00 4 777777777 4 4 999999999999999999999 4 4 66666666 777 5 5 333333333333333333 0 7777777777 5 4 4 33333 4 4 4 9999 55 1 5555555555 66 333 4 4 7777 4 2222222222 2 99 4 44444 3333333 99 55 8 77777777777777777777777777777777777777777777777777 3 66 4 555 4 8 4444444 8 111111 222222 99 3 6 4 1 000 5 77 5 0 2 66666 5 0 0 1111111 7 444444 0 999999 77 5555555555 5 0 6 6 555555555555555555555555555555555555 1 0 6 88 77 5555555555555555 88888 5 6 6 4444 99 22 11 8 11 8 8 444 9999 2 2 2 9 0 0 3 444 0 555555 0 111 3 1111 3 0 3 0 333 4444 3 88 88 3 7 7 333 88 3 3 7 444444444444444444444444444444444444444444444444444 2 0 3 33333333333333 3 44 2 0 33 6 0 2 3 0 44 0 0 333 33 7 7 3 7 999999999999999999999999 2 3 7 888888 88888 111 1111 33 4 3 0 0 33 3 0 0000 6 44 3 000000 6 6 3 00 7 6 6 7 3 99999 7 2 3 7 1 1 000 1 5 1 77 5 88 5 5 1 5 5 000 77 111 777 1 88 3 3 666 6 3 2 333 3 555 999 3 6 000 5 5555555 0 33 0 1111 22 0 88888 1 0 33 55555 9 0 6 3 0 7 3 11 11111111111 6 3 3 7 55 6 88 777 3 6 777 3 6 3 5 88 5
lowQualScore : . .......... . ......... . ............. . . . . . .... . .............. . .. ... ... . ... .. .... . . . ... . . . .. .. ... . . . .. .. . . .. . .. .. ... . . .. ...... ... . ... ... .. . .. ........................... ... .... ... ... . . .. . . .... ... .......... . ... . . . . . . . . .. .. . ......... . . ..................... . . ........ ... . . .................. . .......... . . . ..... . . . .... .. . .......... .. ... . . .... . .......... . .. . ..... ....... .. .. . .................................................. . .. . ... . . ....... . ...... ...... .. . . . . ... . .. . . . ..... . . . ....... . ...... . ...... .. .......... . . . . .................................... . . . .. .. ................ ..... . . . .... .. .. .. . .. . . ... .... . . . . . . . ... . ...... . ... . .... . . . . ... .... . .. .. . . . ... .. . . . ................................................... . . . .............. . .. . . .. . . . . . .. . . ... .. . . . . ........................ . . . ...... ..... ... .... .. . . . . .. . . .... . .. . ...... . . . .. . . . . . ..... . . . . . . ... . . . .. . .. . . . . . ... .. ... ... . .. . . ... . . . ... . ... ... . . ... . ....... . .. . .... .. . ..... . . .. ..... . . . . . . . .. ........... . . . . .. . .. ... . . ... . . . . .. .
lowQualScore : 2 1111111111 7 000000000 2 1111111111111 4 1 9 9 9 8888 9 11111111111111 9 99 000 000 7 444 22 0000 2 1 1 444 1 1 1 22 33 444 1 1 1 33 33 1 2 22 1 66 66 888 3 1 99 555555 888 0 000 000 00 2 11 222222222222222222222222222 888 0000 222 000 3 0 11 0 0 0000 333 2222222222 4 222 4 4 4 4 9 6 4 4 11 66 4 888888888 4 4 000000000000000000000 4 4 11111111 888 0 7 111111111111111111 2 9999999999 0 4 4 00000 4 4 4 4444 33 0 0000000000 11 999 4 4 4444 0 1111111111 3 00 0 44444 9999999 55 55 3 55555555555555555555555555555555555555555555555555 3 11 4 444 4 9 9999999 9 222222 888888 22 3 3 3 4 000 7 44 7 3 7 33333 7 1 7 4444444 1 777777 3 111111 99 0000000000 7 7 7 7 555555555555555555555555555555555555 7 3 7 33 11 4444444444444444 99999 7 0 7 2222 22 11 22 0 00 0 0 222 8888 5 5 5 0 0 0 2 000 0 222222 0 000 2 8888 2 0 2 0 000 0000 3 33 33 3 3 3 333 33 3 3 3 555555555555555555555555555555555555555555555555555 5 0 2 55555555555555 2 55 5 0 22 5 0 5 2 0 22 0 0 000 88 3 3 3 3 000000000000000000000000 5 2 0 888888 55555 000 2222 22 2 2 0 0 22 2 0 8888 5 88 2 000000 7 7 3 00 3 7 7 3 3 33333 3 0 3 3 0 0 555 0 5 0 55 5 55 5 0 0 5 5 555 55 000 777 0 33 3 3 777 7 3 0 333 3 000 333 3 7 666 0 2222222 2 88 0 2222 55 0 55555 0 0 88 00000 8 0 5 2 0 3 3 00 00000000000 7 3 3 3 33 7 33 777 3 7 777 3 7 3 5 55 0
consensus : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTTG-A-TAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---T--A-C-AGAGTCATC--A-TCTGA---T-TTAA--A----TTT--A--CATTAAG-CC--A-----AT----TTTCA-T---TAT-------NAAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCA-GATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
Reference ( family-1828 ) : NNNNNNNNNNNNNNNNNATATATACATGTAGT--AATCGT--ACA-GTAAG---T--CAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-CG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TGT--TT--GC---A----AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TGTTTG-A-TAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGN---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGCNGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---T--A-C-AGAGTCATC--A-TCTGA---T-TTAA--A----TTT--A--CATTAAG-NC--A-----AT----TTTCA-T---TAT-------NAAA--A---T--TTTCTTTG-T--CT-TTAT-A-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTCTCA-GATTC-ATTTCATTCGGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TCC-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GGTA-GATCTN------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTATCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATTGT--AACCATTGTGTTTCCATATTTAATCGTATTTCTCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC-AA-T-TTTGGTA-ACATT-T-TCAAAGTGTA-AGAATCCATGATATTTTTTATTTG-ATAA-TTCCAGTTAGAT-TG-ATT-GTTTG--CGC--CCGTCCC-AAAGAAAACACCCGTTTTGT---CAAG--TCGT-TC-GTTTTTCC----CGTAT---------CGNATATTNNACNGATTC---------------CAGAGGCGTAGCATA-TTCATTCCGT------TGA--CGGCAGGATGACATAATCCAT-C-ACAATCTC-CCCTGGACTGCT-AATAA-CGGGGCAA-AT-CTGATGAA--CACCAAAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAA--GCAGT-AT-TTTT---TGTATCCCCAAATTTCCA--CTANCTA---T-AATCTA-A-GACAGGGN--CGACTACGGTTGAC-G-AAT-ATTTTTCGAA-TGTTA---TGAATCCAACGCGATTTTAA--TTG-AATGAATTTTTGAAATGACTGCTCCCAGG-CTCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTTCTTTTAATTT-TC-ACGCGTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTANTTTATTNATGTCTNATATCGAGAACAGTGNTTCCCCCTATATGAATGAAATGAGTTGCTGCCGTTCAATGCTGTTTTTCCGGANGTTGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAG-T-CCGCCATTNTTC--TA-CACCAATCG-TTGA-C-AGTGTTTA-ACACGTGTT---GCA-TATCGTCTTT--CAGAGAGCTGAGAGATT-AAGGCAAGT-TCGTCAGCGGTACCAA---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATNTTGAACCC-C--TT-----GTTTATAAGA-TTTCCAG-TGTTA-TCTGCTAG-A----TCG-TTTATGAAAAGGGCAAACAATGTTAG-GGA-TAAATTC-GTCCACCC--TTGCGAGACTCC-AGCG-T-TG-ATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|1 : AA-ATGTTT-AGTATAGTG-ACATGTG-TAAT-AC--TT-ACAG---AT-A--------------ACAA-TA-A--T---T--A---A-TA---T--CAT--T-TTATCACCC-G--C-CAA---C-G-ACC-TA-T--A--TT---AC-GT-TTTGAAA--CAAA-T-CATA--C-AC--T--AAAAAACTTCT--GCGCAT---G-TACAGT-ATTT--AAAAAACAA---AAA-----A-T---TAC---AAGTAA--TG--TTA-TG--------G---------A--------AG---T-----TTTTG---TCTG-T---TTAT-GGAACT-ATAATAA-TAA--TAT--T---GC---A----AA---GTCTGTAGAAAA-T-AC-AAA-CATA-TGTT-G-A-TGA--ATACAC-G-T---------CAG-TGT-ATA-T------AC-A---------ACAT-AA--------TTG---AA-TTAT-GT----------G--------TTTCCTCACCG---------T-TTTTT--CTGTGT-GT-----GTAAG-AA-TCAT-ATAAAAATATGATTTCGCAGC---TT--G--TCT-GGGATAG---ATT-ACAAA-CAATATT--AAT-AAAG--T--A-CTAGA-TCGTTCAA-TC-GA---T-TTTG-------TTT--A--CATTAAG-CC--A-----------TTTC--T---TAT-------TAA----------TTTCTTTG-T--TC-TTGT-A-A-AAGGGACAGAC-------AA-TA------AAA------ATGTTTCACA--ATTC-AATTCAT-CAGTACA-ACATAA---G-ACAA--TT-CTATCCC--ATTGGTTCGTGC-TTTATAATCGACCCTGTTCTATGCTT------AAA-GGCAGC-----AAGCCACA-----TC--TGAA----------CATG-GCCATCGGTATGATCTTTT----A-AT---GG-----T--T---GG------AATATCC--TAT-ACA-TA-TTT----CTAC-GGT------TG----TAATG--T--GAT-TT-AG-GA----TGGTG--TAGGTACGGAA---TT-GGAA--CATGC-TG-TAGATTTTATTGT--AACCATTGTGTTTCCATATTTAATCGTATCT-TCTCCTC-TGCGTTGTTG-AAATTAAT-AAGTTGT-GC-AAGT-TTTGGTAGACATT-TATTAAAA----------CCATGAT--TTTTTATTTGGATTA-TTAC--TTAGAT--G-ATTTGTTTGATCGCGACCGTCCC-AAAGAATAC---CGTTTTGTAACCAAG--TCGT-TC-GTTTTTCC-------AT---------CGAATATTATACAGATTC---------------CAGAGGCGTAGCATAATTCATTC-AT------AAAACTGGCAGGATGACA-AATC-AT-C-ACGAT-TC-CCCTG-AC-GCTCAATAA-CGGGGCAATATTCTA--GAA--CACAAAAGGAATGTATCTTAACGCCCGGTT--GGACCATGATCAAAGGCAGT-AT-TTTTCTTTGTATCCCCAA---TCCA--CTAGCTA---T-AATCTA-ATGTCAGGGC--TGACGACAGT-GAC-GCAAT-ATTTTTCGAAATGTT-----GAACCCAACGTAATT--AA--TGT-AATCGATTTTTGAAATGACTG-TCCCAGT-CTCTCCCTC--AGATTTAGCTA--TTTTCTGCGTTTCTTTT-ATTT-TCAACGTCTTTTTCGTCGAAAATTACTCCTAAA-ATTTGTAGTTTATTCAT---TAAT-TCGAGAACAGTGTTT--CCCTATATGAATGAAATGAGTTGCTGCCGTTCAAT-CTGTTTTTCCGGATG-TGTATCTACTTTGTGCGACTTTTGGGTGTATTAAGATTTCGAAGCT-GCTCCATTGTTCGATA-CACCAATCGTTTGA-CAAGTGTTTA-ACA-GTTTT---GCAGTATCGTTCTT--CAGAG---TGAGAGATTCAAGG-AAG--TCGTCAGCGGTA-CAA---AAGTAAGGCC-TT----ATGTT-GTA-ATCGT-T---GAGTTTGAACCCTC--TT-----GTTTATAAGA-TTGTCAGATGTTA-TC--CCAGTA----TCG---TATGAGAAGGGCAAACAATGTTAGTGGATTAAATT--GTCCACCC--CTGCGAAACTCC-AGCG-TATGCATCGAAA-CAATCTGTGTTGTTATGTCATTCA
gi|10 : tCCT-AATT---------T-TTTTTGTTTG-AT-TT-G---GTAAT-AA-TTAA-A----TATA-AAGTTTGCT-C---TCT-G--TCGTGGAT--A---ATT-G-ATGATAATATT----T-ACA---A--A-G-AGGGT-ATA--A-TCTAA---AATTAA--A----TTTTGG--TATTGAG-AT--ACACCTAT----TTT-G-T---TGA-------AGAA--A---TCATTTCTTAA-C--CTATTAT-ATA-A-GGGGCAGTG-----T-AG-CA-A----ACA------ATGTTTCTCT-GTTTCTATTTTGTTTTGATCACATAGAG---C-ACAT-ATT-CTGTCCTCAAATGGTTC-ACA-TTTATA-TCTGCCAGTTTCGATTCTT-------AGGGGTAAA-----ACTCCGC-A----TC--TGAA----------CATG-GACAcatgcgataacagtgactctcgtatctgtgtaaaggacttaatgtttgttgtagaagttgcctggtcaatctccattttttatataaacaaatataatggagcagcttctctttccacagtatcaaagcttctgaagatcgataaatgtaacgaaagttgatgtttgctgaatcctggatcgacgc
gi|11 : tactagtataaaataatcaatatctaAGT--AA--GT--AAG-GTAAG---TAGTAGTAAGT--AAGT--AAA--TGTTTTATTATAGTGGACATGTG-TAAT-ACATTTTACA----ATTA--------------ACAA-TATA--T---TTCA---ACTA---T--AAT--TCTTA-CACCC-GGCC-CAA---C-GGACC-TA-TTTA--TG---TC-AC-TTT-AAA--CAA--TTCA-A--C-ACAATTAAAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---AAAGA-AAATT---TAC---AAGTAA-ATGGGTTATTG-------TG---------A--------AG---T-AATTTTTTGT--TCTGGT--GATATCAGAACT-ATAA--A-TAAA-TG---TT--GC---A----ATTATGTCT-TAGAAAA--TACAAAA-CA-A-TGTTTG-A-TAA--ATACA--G-T---------CAT-TAA-TTACT------ACAA---------A-AT-AA--------TTG---aaactggcctcacattt
gi|12 : agtaATT-ATAC--G-TACA-TAT--T--------------GTATACCT-TATACAA----C-AGA-AA-A-TGTCTGTG-CAG--GTACA--G-A---------CATGTGA-TTA-T------AT-ATTATCGTTCA-AT-AACATTAATATTGTTCAA-TTAT-GT----------AG------TTTTATTCAAGC---------A-TTTTCGTCTG-AT-GT-T---AAACG-AA-TTAT-G----AAT---ATTTTGCTGT---TTT----TCTTGGCA--A---ATT-ACAAACCA----C--A-T-AGA---T--A--------------A-TTTGA---T-TTAA--A----TCT--G--CATTA
gi|13 : TATACATGTAAT--ACTTGCCAACA-G-AAGATGT--CAATAAGT--A-------A-ATATGGTATTATATTG-AACTAT--TGACGATATTT-GTATTTCAT-T--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACTC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CA-A--C-ACAAT--AAACAATTTAT--GTGCAT---G-TACAGTCATT----AATTACTA---CAA-A-TAA-T---T-----AAATGATGTAGCTTT-CT-------TT---------A--------AG---T-A--TTTTTG---TAAGAT---TTAT-GGGATT-catctatgtaaagatatgtaatttgcatgtttctgttcgagaggagataaaaaaacaacggacgcatggcaggttctctaactatgacaattatcctgttgtttttat
gi|14 : AGTAAGT--ACGTTAGAA-GTATGTTATT---GAG-ACATGTG-TAAT-TCAGTT-ACGT---AT-A--------------A--A-TATA--T---TT-----A-TA---C--AAT--T-T-A-CACCC-ATCC-CCA---C-GGCCC-GACT--AGCTG---TC-AG-GCT-AAG--AAA--T----G--C-ACACT--AAACAATGTCT--ATGAAT---G-TACAGTCA-TT--AGAATACCGCGTACATATAAA-T---CACCAGACGGAACATCAG-TA-CG-------TG---------ACCGTCCCTAA---T-A--TCACTG---TCTGGC--GTTAC-A--------AA--A-TAAA-TTT--TT--gatcaacactgattatctcgccttgacgttgatagatacaatcgatgaccatttgataa
gi|15 : tACACA-AA---GTGCAT-ATT-CTTTCAACAATAGGTTA-TCC----ATA----ACCAGTCTCTAATCTT------AAA-GGTAAA-----ATACCACA-----CC--TAAA----------C-TGCGACAT-AATT-GACCTA------T-ATTAAGG-----TATT-TTGC------CATATGCGATGTTACA-TAGTTT-TCTCGAC----------------CAAAGGCT--GAT-TTAAGAGAAGTCTAGTT--TAGGTAcattt
gi|16 : tcttccacacaatttattga-GTAAG---T--AAGTAAGT--AAGT--AAA--TATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACCC-GACC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CG-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACATTTATTTA-AAAAAACGA---AAAGA-AAA-T---TAC---AAGTAA-c
gi|17 : TCGAAA-TTCCGCAATTTTTC--TA-CACCAATCG-TTGAAC-AGTGTTTACACTCGTGTTTTGGCA-TATCGTCTTTACCAGAAAGCTGAGAGATT-AAGGCAAGTGTCGTCAGC-GTATCAATATAGTTAGG--CTTT----AGGTT--TA-ATCGTGT---GATGTTGAACCC-CCGTT-----GTTTA-AAGA-TTT-CAG-T
gi|18 : aTG-ACATGTGGTAAT-ACATTT-ACA----AT-A--------------AGCA-TATA--TGGGTTCA---AATAGGGT--AAT--GGTTA-CACCC-GGCC-CCA---CCGGACCCTA-T--AG-TG---TCCAC-TTT-AAA--CAA--T--A-A--CAACAAT--AAACAACTTCTCGGCGCAT---GTTACAGTTATTT--AAAAAAAGA---AA
gi|19 : gagaggtaagcatttttgacttGT--ACA-GTA-----T--CAG-AAGT-----T--AACTAT-TTTTATTAT-GTG-ACACGT--TAAT-ATGTTT-ACA----AT-ATTTTACATTTCATTACAATTATA--T---TTCAATTA-TA---T--AATGCT-TTA-CACCCGGGCCACAAACTC-GAAAC-CA-T--A--TGTCCTC-ACTTTT-AAAT-CAAATT-CATA--C-ACA
gi|2 : ATAAATAAATATATTCTAATTAT--ATA-GTAAG---T--TAGTAAGT--A-GT--AAA-ATGTTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACA--TATA--T---TTCA---A-TA---T--AAT--T-CTATCACCG-GCCC-CAA---C-GAAC--TA----A--TG---TC-AC-TTT-AAAAACAA--T-CA-A--C-ACAAT--AAACAATTCTT--GC-CAA---G-TACAGTTATTT--AAAAAACAA---AAAGACAAA-T---TTC---AAGTAT-GTGGGT-A-TG-------TG---------A--------AG---T-A--TTTTTG---TC-GGT--ATTAT-AGAACT-AATA--A-TGAA-TGT--TT--GC---A----TATATATCT-TAGAAAAGTTAC-ACA--A-A-TGTTTA-AATAG--ATCCA--GCT---------CAT-TAA-TTAGT------AC-A---------A--T-AA--------TTG---AA-TTATCGT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCGGCGC---TTT-G--TCTTGGGA--A---ATT-ACAAAACAATATT--A-T-AAA---T--ATC-AGAGTCATC--A-TCTGA---T-TTGATTA----TTTT-A--C-TTAAG-AC--A-----AT----TTTCA-T---TAT-------AAAA--A---T--TTTCTTTG-T--CT-TTGT-A-A-A-AGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCA-GATTC-ATTTCATTCAGTTCACACATAA---G-ACCA-ATT-CTATCCTCGATT-GTTC-T-C-TTTATA-TCGACCCGTTTCTATTCTT------AAAAGGCAGG-----ATTCCACAA----TC--TGAA----------CATG-GCCAT-GG-A-GATCTA------ACAT---GT-----T--T-TGGG------AATA-CCAATATT-CA-TA-TTT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGGG--TAAGTAGCGAAG-TTT-GGAA--CATGC-TG-TAGATC--ATT-T--AA-CATT-TGTTTCCATATTTAATCGTATTTCTCTCTGCTTGCGT-GTTGTAAATTA-CAAAGTTGT-GC-AATT-TTTGGTA-GCATTAT-TCAAAGTGTA-GAGATCCATGATATTTTTTATTTG-ATAGTTTCCAG-TAGAT-TG-ATT-GTTTG--CGC--CCGGTCC-AAAG-AAATACCCGTTTTGT---CAAG--TCGT-TC-GTTTT--C----CAT------------GTATATTTAATCGATT----------------CAGAGG-GTAGCATA-TTCATTTCAT------TGA--CGGCAGG-TGACATGATCCATCC-ACAATCTC-CCCTGGACTGCT-AATAA-AGGGGCAA-AT-CTGATGAAACCACC-AAGGAA-GTATCTTAACGCCCGGTTTTGGACCAT-ATCAAT-ACAGTGATGTTTT---TATAT-CACAAATT--CA--CTA-CTA---TAAATCTA-A-GACAGGGG---GACCACCGTTGACAG-AATAATTTTTCGAA-TGTTACTGTGAAT-CAACATGAATTTAA--TTGAAATGAATTTTTGAAATGA-TGCTCCCAGG-CTCTCCCTCCAAGATTTAGCTAAGTTTT-TGCGTTCCTTTTAAGTTATC-ACG-GTTTTTCGTCG-AAATTACT-CTAAA-A----TATTTTATTGATGTCTCATATCGAGAACAGTGGTTCCCCCTATATGAA-AAAATGAA--GTTGCCG-TCAATGTTGTTTTTCCGGAAGTTGTA-CTACTTTG---GACTTTT--GTGTATTAA---TTCGAAG-T-CCGCCATTATTC--TATCACCAATCG-TTGA-C-A-TGTTTA-ACATGTGTT---GCA-TATCGTCTTT-----AGAGTGGAGAGATT-AAGGCAAGT---GTCAGC-GTAC--A---AAGTAGG--C-TT----AGGTT-GTA-ATCGT-T---GATGTTGAACCC-C--TT-----GTTTATAAGA-TTTCC---TG-TA-TCTGCTAG-A----T-G-TTTATGAAAAGGGCAAAAAATGTAGG-AGA-T-AATTC-GTCGA-CC--TTGCGA-ACTCC-AG-G-T-TG-AT-GAAACCAATCTGTG-TG--ATGT-ATTCA
gi|20 : aataaaccaatcaattaTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CA-A--C-ACAAT--AAACAACTTCT--GCGCAT---G-TACAGTTATTT--AAAAAACAA---AAAGA-AAA-T---TAC---Agcgtac
gi|22 : --A-T-AAA---TGTA-C-AGAATCATC--AATCTGA---T-TTAA--AA---TTT--A--C-TTAAG-TCC-A-----AT----T--CA-TAGATAT-------GAAA----------TTCTTTA-T-------AT-C-A-C-GGGACAGAC-----T-AAATA-G----AAA------ATGTTTTT
gi|23 : tta---------------CAAAGTCGTAGCATA-TTCA-GCTGA------TGT--CGACAGAACGAAATTGACCAT-C--CAATTTCTCCTTGGGCTGCT-AAGAT-TGGTGTGA-AA-C-GATGAA--CGC
gi|24 : CCCCGAATTCCCAACTTATTTAGACT-AATCTATA-GACAGGGTGGCGACTAAGGTTGAC-G-AAT-ATTCT-CGAA-TGTTA---TGAATTCAAACCGATTT
gi|25 : TTTTATTATAGTG-GCATGTG-TAAT-ACATTT-ACA----AT-ATTTACTTTTCATT-ACAA-TATA--T---TTCA---A-
gi|26 : caaataaaatgtaattcataaactttcaT-TTTCTAC-G-TAATAGATC----TAGCG--C--GAT-TTCAA-AA----TGATG--CAAGT-TCGGAA-TCTCGGAA--CATGC-TG-TAAGTC--ACT
gi|3 : ttactacCTTGGGA--A---ATT-AC-AAACAATATTG-A-T-AAA---T--G-C---AGTCATCA-A-TCTGA---T-TTAG--A----TTT--A--CATTAAC-CC--A-----GTCCAATTTCA-TAA-TAT-------AGAATTT---T--TTTCTTTGTT--CT-TTAC-A-A-A-AGGGCAGATACACAT-AATTA-G----ACA------ATATTTCT----ATCC----TCAATTGGTTCccat
gi|3 : ACACATAATTAG-ACAATATTTCTATCCTCAATTGGTTC-TCCGTTTATA-TCG-----TTTCTATCCGTCATACCAAAAGGCAGAGCAATATCCCAAAAGACGTCATTGAAGGCCAATGGCCATG-GACAT-GGTA-GATCTACAGTGAA-AT---GGAGATAT--TATGCGCGCGCAAGTATCCAATGTTACAGTA-CTTCTTTCTATAG-T------TACTACTAATT--TTGGCTGTTTAG-GA----TGGTAATTAAGCTTCGACG-TTT-TGAAAACATGCCTGATAGAT---ATTGTCAAACCATTGTCTTTCCAAATTTAAAC-TATTTTTCTCCTC-TGCGT-TTTGTAAATCA-C-AAGTTGTTGCCAA-TCTTTGATATACATT-T-TCAAAGTGTACAGAATCCATGATATTTTTTATTTG-A-AA-TTCCAGTTAAATATGGATT-GTTTG--CGC--CGGTCCCCAGAGAAAACACCCGTTTTGT---TAAGATCCGTCTCAGTTTTTCCGTTATGTATATTATTATCCCGATATNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGGCGTAGCATA-TTCATTCCGTGAGTACTGA--CGACAGGATGACATAATCCAT-CCACATTCCC-CCCTGGACTGCT-AATAAATGGGGTAA-AT-CT-ATGAA--CACCAA-GGAA-GTATCTTAACGCCCGGTTTTGGACCAT-------------------CT---TGTATCCCCAAATTTCCG--C--ACTA---T-AATCTA-A-GACAGGGG--CGA-TACAGTTGAT-G-AAT---TTTTCGAA-TGTTA---TGAATCCAACA-GATTTTAAAATTG-AATGAATTTTTGAAGTGACTGCTCCCAGGGCCCTCCCTCC-AGATTTAGCTAAGTTTTCTGCGTTT-TTTTAATTT-CC----CGTTTTTCGTCGAAAATTACTTCTAAATATTTGTAtccgtttatatcgtttctatccgtcataccaaaaggcagagcaatatcccaaaagacgtcattgaaggccaatggccatggacatggtagatctacagtgaaatggagatattatgcgcgcgcaagtatccaatgttacagtacttctttctatagttactactaattttggctgtttaggatggtaattaagcttcgacgttttgaaaacatgcctgatagatattgtcaaaccattgtctttccaaatttaaactatttttctcctctgcgttttgtaaatcacaagttgttgccaatctttgatatacattttcaaagtgtacagaatccatgatattttttatttgaaattccagttaaatatggattgtttgcgccggtccccagagaaaacacccgttttgttaagatccgtctcagtttttccgttatgtatattattatcccgatatnnnnnnnnnnnnnnnnnnnnnnnnntcagaggcgtagcatattcattccgtgagtactgacgacaggatgacataatccatccacattcccccctggactgctaataaatggggtaaatctatgaacaccaaggaagtatcttaacgcccggttttggaccatcttgtatccccaaatttccgcactataatctaagacaggggcgatacagttgatgaatttttcgaatgttatgaatccaacagattttaaaattgaatgaatttttgaagtgactgctcccagggccctccctccagatttagctaagttttctgcgtttttttaatttcccgtttttcgtcgaaaattacttctaaatatttgta
gi|4 : cttgggaaattacaaacaatattgataaatgcagtcatcaatctgatttagatttacattaacccagtccaatttcataatatagaatttttttctttgttctttacaaaagggcagatTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAG--T-CA-ACCC-ACAAT--AAACAACTTCT--GCAC-T---G-TACAGTTATTTTAAAAAAAC-A---AAAGA-AAA-T---TAC---AAGTAA-ATGGGTTA-TG-------TG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTAT-AGAACT-ATAA--A-TAAA-TG---TT--GC---A----A-TATGTCT-TAGAAA---TAC-AAA-CA-A-TG-TTG-A-TAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TTAT-GT----------GG------CTTTCCTCAAGG---------T-TTTTTGTCTG-GT-GT-T---GTAAG--A-TTAT-A----AATA-AATTTCGCAGC----TT-G--TCTTGGGA--A---ATT-ACAAAACAATATTA-A-T-AAA---T--A-C-AGAGTCGTCA-A-TCTGA---T-TTAG--A----TTT--A--CATTAAGACC--A-----AT----TTTCATT---TAT-------TAAA--ATATT--TTTCTTTGTT--CT-TTATAA-A-A-GGGACAGAC-----T-AA-TA-G----AAA------ATGTTTTTCA-GATTCAATTTCATTCAGTTCACACATAA---G-ACAA-ATT-CTATCCTCGATTGGTTC-TGC-TTTA-A-TCGACCCGTTTCTATTCTT-------AAAGGCAGG-----ATTCCAC-A----TC--TGAA----------CATG-GCCAT-GGTA-GATCTT------A-AT---GG-----T--T-TGGG------AATATCCAATATTACA-TA--TT-TTTCTAC-G-T------TG----TAATG--T--GAT-TTTAG-GA----TGGTG--TAGGTA-CGAAGTTTT-GGAA--CATGC-TG-TAGATC--ATT-T--AACCATTGTGTTTCCATATTTAATCGTATTT-TCTCCTC-TGCGT-GTTGTAAATTA-C-AAGTTGT-GC--A-T-TTTGGAG-ACATT-T-TCAAAGTGTAGAGAATCCATGAAATTTTTTATTTG-ATAA-T
gi|5 : -TAAT-ACATTT-ACA----AT-ATTTGCATTTCAT--ACAA-TATA--T---TTCA---A-TA---T--AAT--T-TTA-CTCCC-GGCC-AAA---C-GGACC-TA-A--A--TG---TA-AT-TTC-AAG--CAA--T-TA-A--C-ACAAT--AAACAATTTCT--GCGCA----G-TACAGTCATT----------------------AA-TTGCTAC---AAATAA-TTGAATTG-TG-------TGACTTTCCTTA--------AGTATT-A--TTTTTG---TCTGGT--GTCGTAAGAATT-ATAA--A-TACA-T-T--TT--GC---A----GCT-TGTCT-TGGGAAA-TTAC-AAACCA-A-TATT---A-TAA--ATACA--G-T----------AT-CAA-TC-------------------------T-GA--------TTA---AA-TTAa
gi|5 : -TAAA-TGTAATT--TC---A----AGCA---AT-TAACACA---AT-AAA-CA-A-TTTCTG-C-GCA--GTACA--G-T---------CAT-TAA-TTGCT------AC-A---------A-AT-AA--------TTG---AA-TTGT-GT----------GA------CTTTCCTTAAGTAT-------TATTTTTGTCTG-GT-GT-C---GTAAG-AA-TTAT-A----AATA-CATTTTGCAGC---TT--G--TCTTGGGA--A---ATT-ACAAACCAATATT--A-T-AAA---T--A-C-AGTATCA----A-TCTGA-----TTAA--A----TTA--A--C--TAAA-CC--A-----AT----TTCAA-T---TATACATGTATAAA--A---TA-TTCCTTTGTT--CT-TTAT-A-ACA-GGGATAAAT-----A-AG-TG-GGGGAAAA------AT-----TCAGGATTC-ATTTCATTGTGTCCA-ACATAT---G-ACAA-TTT-C--TCCTCAATCGGTTC-TCT-TTTATA-TCGACCCGTTTCTATTCGT------AAAA-GCAGG-----ATTCCAC-A----TC--TGAA----------CAGG-GCCAT-GGTA-GATCTC------A-AT---GG-----T--T-TTGA------AATATCCAATTTTACA-TA-TTT-GTT-TAC-G-T------TG----TAATG--T--GAT-TTactaaaccaatttcaattatacatgtataaaatattcctttgttctttataacagggataaataagtgggggaaaaattcaggattcatttcattgtgtccaacatatgacaatttctcctcaatcggttctcttttatatcgacccgtttctattcgtaaaagcaggattccacatctgaacagggccatggtagatctcaatggttttgaaatatccaattttacatatttgtttacgttgtaatgtgatttc
gi|6 : taatacatttacaatatttgcatttcatacaatatatttcaatataattttactcccggccaaacggacc-TCGCCAGGGGTA--------AATAGG--C-CTTTTAAGGTTTGGATATCGT-TTTGAATTTTGAACCT-C--TTTTTGTGTTTTAAAGACTTTCCAG-TGTTAATTTACTAG-AAAATTCGGTTTATGAAAAGG-CAAACCATGTTAG-GGA-TAAATTTGGTCCACCCTTTTGC-CGACTCCAAGCGTT-TG-GTCTAAA-AAATc
gi|7 : A-TG-------TG---------G--------AG---TTA--TTTTTGGTTCCTTGTTGGTTAT-AGAACTTATAA--AATAAAATGT--TTTTGCCCCACCCCAGTATGTCT-TAGAAAA-TTAC-AAA-CA-AATGTTGG-A-AAATCATACAAGG-TTTTACCTCCCAT-TAAATTATTCCTCTCAC-A---------A-ATTAA--------TTG---AAATTAT-GTTGTCGGGTTTGGTCCTTTCCTTCCTCAAAGGTTTTCTTTT-TTTTTGTCTG-GTGGT-TATGGTAAGAAA-TTATAA----AATA-TTTTTCGCCGCCAGCTT-GTTTCTTGGGA--AAATATTAACAAAACCAT-TTGAA-TAAAA---T--A-C-AGAGCCATCTAA-TTTGAAATT-TTAA--AGATTTTT--ACCCATTAAG-C----------T----TTCTT-T---TAT-------CAtcacgaacctttatcctcctgtggtgtgttgatggtccattccccaagtagaaaaacccatggactctgttcttgttttggttagggaaccttatgctatgtgaattgttcgttaagaagttttgcggttcaattctttttttttttttactacaacaataaaatggggaaagcagttctattggttcacaggtatcaccaaacgctgttcctgtatatagaaaatcccgggtataaaatgattaacgaagtgaggtttttgtttggattccttggggattgacg
gi|7 : ---T--TTTTTTTG-TTCCT-TTAT-A-A-AAGGGACAAAC-----TAAA-TA-G----AAATCCATCATGTTTCtaccgactcaattaatctccccaatttcttcctacttatttataaatttttctctttttttttgttcctttataaaagggacaaactaaatagaaatccatcatgtttc
gi|8 : atgtggagttatttttggttccttgttggttatagaacttataaaataaaatgtttttgccccaccccagtatgtcttagaaaattacaaacaaatgttggaaaatcatacaaggttttacctcccattaaattattcctctcacaaattaattgaaattatgttgtcgggtttggtcctttccttcctcaaaggttttctttttttttgtctggtggttatggtaagaaattataaaatatttttcgccgccagcttgtttcttgggaaaatattaacaaaaccatttgaataaaatacagagccatctaatttgaaattttaaagatttttacccattaagctttcttttatcataccgactcaattaatctccccaatttcttcctacttatttataaatttttctctCGT--ACA-GTAA--------AGTAAGT--A-------A-ATATTTTATTATAGTG-ACATGTG-TAAT-ACATTT-ACA----AT-A--------------ACAA-TATA--T---TTCA---A-TA---C--AAT--T-TTA-CACCC-GGCC-CAA---C-GGACC-TA-T--A--TG---TC-AC-TTT-AAA--CAA--T-CG-A--C-ACAAT--AAAAAATTTCT--GCGCAT---G-TACAGTTATTT--AAAAAA-AA---GAAGA-AAA-T---TAC---AAGTAA-ATGAGTTA-CGTGGCTCCTG---------A--------AG---T-A--TTTTTG---TCTGGT--GTTATAAGAACT-ATAA--A-TAAA-T-T--TT--GC--------AGTATGTCT-TAGAAAA-TTAC-AAA-CA-A-TA-TTG-A-TAA--ATACA--G-T---------CAT-TAA-TTACT------AC-A---------A-AT-AA--------TTG---AA-TGAT-GT----------GG------CTTTCCTTAAGT---------T-TTTTTGTCTG-GT-GT-T---GTAAG-AA-TTAT-A----AATA-AATTTCG
gi|9 : ttaaatacacaatccatgtttaccttgatacgttttattcataATATATACATGTAGT--AATC----ACATGT------T--TAG-AAGTTTA--T--AAA------TTAT-ATACTG-ACATGTA-TAAT-ACATCA-ACA----AT-T--------------ACAG-TATTGTT---TTCA---T-TA---CCAAAT------A-CACCC-GGCC-CCA---C-CGACC-TA-T--A--C----TC-AC-TTT-GAG--CAA--T-CA-A--C-A-AAT--AAACAATTTCT--GCGCGTGTAG-TACAGTCAGTT--AA
gi|9 : actaatcaatttttggtgttggaagtcccTTTGTCTG-GT-ATCT---GTAAA-AAATTA--A----AATA-AATAATGCAGA---TTGAG--TCTTGGGG--ACA-ATT-ACAA--CAATATT--AAT-AAAATGT--A-CCAGAATCATC--A-TCTGA-----TTAA--A----ATT--A--CTTTAAG-TCCAA-----AT----TTATA-A---TAT-------GCAA--A---T-----------T--CT-TTAT-T-C-A-GGGACAAAC-----T-AA-TATG----AAA------ATGTTttactttgtctggtatctgtaaaaaattaaaataaataatgcagattgagtcttggggacaattacaacaatattaataaaatgtaccagaatcatcatctgattaaaattactttaagtccaaatttataatatgcaaattctttattcagggacaaactaatatgaaaatgttg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTAGGAGTAGTGTAATAAAGCGTGTTCCATTTCTGTCACACAGAATACGTGTACATTCTGTCCGCAAATGGATCACATTTTATATCTGCTAGTTCTCCGCATCTAAACGTGACTGACCATAGGTGATCTCATAT
Unaligned ( gi|27 ): GTAATCTCACACATTAAGTCTGTTTTTAAATACATAATTAGTCTTACAAGGTAAGTATGTTTACACGTACACACTTAGT
Unaligned ( gi|28 ): GTGACCCCACCATCTTTAGTGTTTTTATGGACTAAT