lowQualScore : 1111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 5555 111 0000000000000000000000000000000000000000000000000000000 1 333 4444444 66666666666666666666666666 11 222222 3333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 333333333333 111111 11 1 2222 11111111 4444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222 11 1111 1 777777777777 11111 2222 111 1 111 111 5555555555555555555555555 11 2222 1 11 222 1111 11 11
lowQualScore : 7 0000 4 444 2 9999999999999999999999999999999999999999999999999999999 7 555 1111111 2 3 4 22222222222222222222222222 3 2 11 999999 0 2 2222 0 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 8 6666 444444444444 5 66 77 4 777 3 3 5 999999 2 2 77 3 2222 11111111 99 4444444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 33333 11 4444 6 77 0 6 999999999999 66666 1111 222 6 7 5 99 1 111 111 99 2222222222222222222222222 00 88 5 7777 9 5 5 5 4 5 8 8 44 3 000 1111 4 5 55 777 66 0 888 55 33 7
lowQualScore : . .... . ... . ....................................................... . ... ....... . . . .......................... . . .. ...... . . .... . . .................................................................................................................................................................. . . .... ............ . .. .. . ... . . . ...... . . .. . .... ........ .. ............. ............................................................................................................................... . ..... .. .... . .. . . ............ ..... .... ... . . . .. . ... ... .. ......................... .. .. . .... . . . . . . . . .. . ... .... . . .. ... .. . ... .. .. .
lowQualScore : 0 0000 0 555 5 5555555555555555555555555555555555555555555555555555555 0 000 3333333 2 2 2 88888888888888888888888888 2 5 55 000000 2 5 2222 8 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 2 0000 000000000000 7 33 44 7 999 6 0 7 222222 5 5 77 5 7777 00000000 22 0000000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 22222 00 2222 7 99 1 3 666666666666 11111 6666 444 6 1 7 44 6 777 777 22 3333333333333333333333333 33 00 2 3333 8 7 7 3 0 7 6 6 00 7 333 7777 5 0 44 999 99 9 888 88 11 7
consensus : NAAATAAAATAGATGCGAATTAAAATNATTGAAATNGAATTANAATCACAGNAAAANAATACCATTNATTCCATTTCTGAGAATATANTTCTACATTNAGGAGTTTTGTTT-A-GATACTCATTTA--TATATACCCGGAAAATTTT-ATC-TTATGACATAATATNTA-TATGTAAATGAATTATGACATA----TCGTGCAANAGTATGGAGGTGCAAAC------------------GTCCAGC-GAATGG-GACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCAC---A-AATTT-GC----ACGGAACTCGGATTGACCCCAACAGAGANTCGCAAGAAGTT--AAAATTGACAGAAT--CGG--------CGCAGAAATGTTTCTCGCTCCGTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAAGGNTATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGGAAATTAACGAA-AAAA--C------------GGTAAAAGTGCTGGATG-C----ACG-AT------------------GTCGG------ACCGAA------CG--------AGA--GCNTG-AAGAAATTA-------T----------AGC----AA-------AT-------TCACCGCAN----TC--TGT----CGGATG-ATTTAG--GAGTGCATAGGA------GTATNTGCA----NGTTG-GATACC-C-GACTCT-TNAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACA-TGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCC---GAGC-ACAA-CCTT--ATTG--TAAAATAATT---AATTTT-CTCA-NAAAGNTAA
Reference ( gi|1 ) : AAAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTT-T-GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGTATGACATGATATGTA-TATGTAAATGAATTACGACATA----TCGTGCAACATTTAGGAGATGCAAAT------------------GTC-----------------TAGCGTCGAATGCGTCGCGCTGAA-AAGTTAT---AAAA----GT----ACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAAT--CAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCGTAATAAATTAACAAG-AAAA--C------------AGTAAAAATGCTGGATG------ACG-AT------------------GTCGG------ACCGAA------CG--------AGA--GCGTG-AAG-------------T----------AGC----AA-------AT-------TCACCGCAA----TC--TGT----CGGATG-ATTTAA--GAATGCTTAGGACACA-TGTATGTGCA----AGTTA-CGTACC-T-GAGT-T-TAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTG-TGAACTTA-A-TGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCT---GAGC-ACAA-TCTT--ATTG--TAAAATAATT---AATTTT-GTCA-CAAAGTTAA
gi|10 : AAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCT-A-GATACACAGTTA----TATACCCAGAAAATTTT-ATC-----GATATAATATA-A-TATGTAGATGAATTATGAAATA----TCGTGCGAAAGTATGGGGATGCAAATACCCAGTGAAATGGCTACGTC------------------AGCGTCAAACGCGGAGCAGCGAG-AAGTCAC---A---------------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|6 : gAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCAT----GTATATATCCGGAAATTTTTTATCATTATGACATAATATTTA--A-GTAAAT--ATT--GACATG----TCATGCAACAGTTAAGAGGTGCAAAT------------------GTCCAGCAAAATGGTGACATCAGCATCAAATGCAGTGTACTT-A-AAGTCAC---TGAATTTCGC----ATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAATAGCAAAG-----------AAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATATG---A-CAGTAT------GCCAGGAA--AGAGGCCGGCCAAAGGAAATTAAGGAA-AGAA--g
gi|11 : aatgtTTTGTTT-A-GTTACTCATTTAC----ATACCCGGAAAATTTT-ATCTTTATGG-------TGTAATATTTAAATGAATTATGACATAAAAGCCCAGCAAAAT---GGCGA--CA----------------------TC------------------AGCTTCAAATGCAGCACAACGAGTAATTCAT---TAGA----TTTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACAAA--------------TTGCAGATATATTATTCGCTTTCTGGTGTTCA-------------AAT-TATTTT-CTGAAGGGTATGCGAA-CAATA
gi|5 : gcTATATACCCGG---GTT---------ATGA--TGA-A---A-TATGTAAACGAATTATGGCAT------CGTTTAACAGTATGGAAGTGCAAAC------------------GTCCAGCTGAATGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAGATATTTTA--------C----ACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAAT--CG---------CACAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCG-AGGAAAGTCGTGAA-AAAC--C------------GGTAAAAGTTCTGTATG------ACA-CT------------------ATTCA------A--GAA------GGCAAATTTTAGAATGCGTG-AAGAAA----------TTAAGGGAATAAGC----AAATCTTCTAT-------TCATCGCAT----TT--TAT----CAGATG-ATTTAG--GAATGCATAGGA-------TATGTACA----TCTTG-GATACC-TCGACT-T-TAAGA
gi|2 : tGCGTAAAATGCGGAACACCGAG-AAGTCAA---ATAATTT-GT----ACGGATCTTGAATTGACCCCAACAGAAA-TTGTAGGAAG-----------ACAGAGT--CGG---------ACAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCAAAGAAAATCAACGAA-AAAC--C------------GGTGAAAGTGCTGGATGAC----ACG-AT-------------------TCGG------GAAGAAAACTTTC---------AGA--CCATGCAAG------------------------AGCTTGAAA-------AT---------ATTG-------TC--TGTTTACCGAATA-ATTCAG--GGATACACAGG-------GTATCTGCACTTTGGTTA-C---CC-C-GACTCT-T---AAAAT-------AA---AAA--C-A----A--------GG---A-------------G-TG-ACTT----TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGC---GAAC-ACAA-CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAA
gi|7 : AAAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGG-CGTCCGTAATAA-TTAAAACG-AAAA--C------------AGTAAAAATGCTGGATG------ACGTAT------------------GTCGGA-----ACCGAA------CG--------AG---GC-TG-AAG-------------T----------AGC----AA-------AT-------TCACCGCAA----TCTGTGT----CGGATG-A-TTAA--G-ATGC-TAGGACACACTG---GTGCA----AGTTAGCGTACC-T-GAGT-T-TTAAAAAAT---GAAGAA---AAACGCAAT---A--------GG---ATT----TCATGTTG-TG-ACTTA-A-TGT-AAACACACG-CGAGAGAAATAT-GACGTCATCAAGTCGAG-CCGCT---GA-C-ACAATTCTT--ATTG--T-AAATAATT---AATTTT-GTCA-CAAAGTTAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : cA-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCAAAGAAAAT---CAAGCAAAATCC------------GGTGAAAGTGCTGGATAGC----ACG-AT-------------------TGGGGAGACAACCTTA------CG--------AGA--GCTTG-ACGATATTACGGGGATC----------AGC----AA-------ATCGTCTGATCACCGCAT----TC--TAT----CGGATA-ATTTAG--GAGTGCGCAGG-------GTATCTGCA----CCTTG-GATACC-T-CAAT-TCTTTAAAAAT---GAAGAA---AAA--CAA----AGAG-----GG---GTT----TCATGTTA-TAAAGTTA-CTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCC---GAGCAAAAA-TCC----TTG--TGAAATAATG---AATTTC-CTCA-AAAAa
gi|3 : tcaA-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTGAAGGAAATCATGAAA-AAAA--CCCACCCCAAAATGGTAAAAATGGTGGATGTGTGACACT-ATTTAGGAAGACAGCTAGGAGTCAG------ATCATT------TG--------AGA--GCTTG-AAGAAATTA-------T----------AGG----AA----------------TCA--GCAAATCCTC--TGT----TCATTGCATTCTATTGAATGCTAAGAA---A-TGCATAGGCA----TGTTG-GGAACCAT-GGGT-T-TTGATAAAT---GCAGAA---AAG--CAA----ACTTAAGGAGG---ATA----TCATGTTA-TAAATTTGCA-TGTAAAACAC-TG-CAAAA-TAATTTG--------CAAGTTACT-CCGGC---AAGC-ACAA-TTTT--ATTG--TGAAATGATT---AATTTT-CTCA-AAAAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|8 : T----CGGATA-ATTACA--GAGTGCATAG----CC-GGTCC-TGAA----AGTTG-GATAAT-C-GACTCT-TAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------CG---ATTATTTCCATGTTTCTAAAATCACA-TGTAAAACGC-CGCCCAAA-AAATGT-GACGTCT-CAAGTTGCGCCCGCC---GACC-ACAT-CCTTTGTTTGCTTAAAATAATTAACAATTTT-aacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|9 : TAA--GAGTGCATAGG-------GTTCCTGAA----AGTTG-GATACA-TCGACTCT-TAAACAAGT---GAAGAA---AAA--CAA----A--------GAGATATT----TCATGTTT-TAAAATCACA-TGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCC---GACC-ACAT-CCTT--GTTG--TAAAATAATT---AATTTT-ctagaaaaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTG----CGCTAGAGAGC-ACAA-CCTT--ATTG--TAAAACGACT---GATTTC-CTCATTAAAGATAActagaaaaaaattaataatttacaaagttgaacgttagggttctcctcaagaaagatataattggtaatatacagcgcttatgtgaaattacattgaagaattcaaaagtatttagtttaatccacggaatttttggacaaccttctt
gi|17 : GC-ACAA-CCTT--ATTG--CAAAATAACT---AATTTC-CTCA-atgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 2 11 111111111 3333 11 11 22 2222 111111 11 4444444444 444444444444 5555555555555 1 11111 111 111111 111 333333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4444444444444 1 1 11111 111 3333333333333333333333333333 11
lowQualScore : 5555 1 1 1 7 999 1 1 3 0 33 0 7 999999999 1 3 3 9999 1 33 11 11 0 4 8 5555 0 0 222222 0 0 0 3 22 1 9 2222222222 1 1 0 1 77 333333333333 1 77 99 1 7 6666666666666 5 2 0 88888 111 5 5 55 2 1 5 666666 3 1 77 5 000 66 444444444444 6 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 99 0 0 4 2 66 9999999999999 1 5 5 5 5 1 0 5 22222 000 77 6666666666666666666666666666 88 3 1 88 7 5 5 3 2 5 444 55 5 2 00 66 66 777 4 1 99 1
lowQualScore : .... . . . . ... . . . . .. . . ......... . . . .... . .. .. .. . . . .... . . ...... . . . . .. . . .......... . . . . .. ............ . .. .. . . ............. . . . ..... ... . . .. . . . ...... . . .. . ... .. ............ . ................................................................................................................................. . .. . . . . .. ............. . . . . . . . . ..... ... .. ............................ .. . . .. . . . . . . ... .. . . .. .. .. ... . . .. .
lowQualScore : 7777 0 0 0 3 777 0 0 7 7 33 7 3 333333333 0 7 7 0000 2 88 00 00 8 0 0 4444 8 8 444444 8 8 8 8 44 4 6 8888888888 4 0 7 0 77 888888888888 0 00 22 5 8 4444444444444 2 2 8 77777 777 0 0 22 5 0 0 444444 0 7 44 3 999 44 222222222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 22 7 1 2 2 99 0000000000000 0 0 0 0 0 4 8 9 44444 000 99 9999999999999999999999999999 77 6 0 00 1 0 0 4 2 0 444 22 0 9 66 11 11 888 4 1 99 0
consensus : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATT-ATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGC-G-AAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCAT-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCG-AAGGAAATCAA--CGAAAAANC------------GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-----GG------ACCGNAC----GAGAGCTTGAAGA-ATT------AT-------AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTAC--CTGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
Reference ( family-1805 ) : NAAATAAAATAGATGCGAATTAAAATNATTGAAATNGAATTANAATCACAGNAAAANAATACCATTNATTCCATTTCTGAGAATATANTTCTACATTNAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATC-TT-ATGACATAATATNTATATGTAAATGAATTATGACATATCGTGCAANAGTATGGAGGTGCAAACGTCCAGC-G-AA-TGG-GACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCAC-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCGCAAGAAGTT--AAAATTGACAGAATCGGCG--------CAGAAATGTTTCTCGCTCCGTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAAGGNTATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCG-AAGGAAATTAA--CGAAAAAAC------------GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-----GG------ACCGAAC----GAGAGCNTGAAGAAATT------AT-------AG-------CAA-------AT-------TCACCGCANTC--TGTCGGATGATTTAGGAGTGCATAG--GA-----GTAT--NTGCANGTTGG-ATA-C-C-CGACTCTTNAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
gi|1 : AAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTTT--GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGT-ATGACATGATATGTATATGTAAATGAATTACGACATATCGTGCAACATTTAGGAGATGCAAATGTCTAGC-G------------------TCGAATGCGTCGCGCTGAA-AAGTTAT-A-AAA---GTACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAATCAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCG-TAATAAATTAA--CAAGAAAAC------------AGTAAAAATGCTGGAT-G------ACG-AT------------------G------------TC-----GG------ACCGAAC----GAGAGCGTGAAG------------T-------AG-------CAA-------AT-------TCACCGCAATC--TGTCGGATGATTTAAGAATGCTTAG--GACACATGTAT--GTGCAAGTTAC-GTA-C-C-TGAGT-TTAAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTG-TGAACTTA-ATGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCTGAGCACAA--TCTT--ATTG--TAAAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|10 : aAAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCTA--GATACACAGTTA--TATA--CCCAGAAAATTTT-ATC------GATATAATATA-ATATGTAGATGAATTATGAAATATCGTGCGAAAGTATGGGGATGCAAATACCCAGT-GAAA-TGGCTACGTCAGCGTCAAACGCGGAGCAGCGAG-AAGTCAC-A-----------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|11 : gGCTTTGTTTA--GTTACTCATTTA--CATA--CCCGGAAAATTTT-ATC-TTTATGGTGTAATATTTA------AATGAATTATGACATA----------------------AAA-GCCCAGC-A-AAATGGCGACATCAGCTTCAAATGCAGCACAACGAGTAATTCATTA-GATTTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACA-AAT---TG--------CAGATATATTATTCGCTTTCTGGTGTT------------CA-AAT-TATTTT-CTGAAGGGTATGCGAA-CAATAg
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTGCG-CTAGAGAGCACAA--CCTT--ATTG--TAAAACGACT---GATTTCC-TCATTAAAGATAA
gi|17 : GCACAA--CCTT--ATTG--CAAAATAACT---AATTTCC-TCATTCAAGATAAatgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
gi|2 : GCGTAAAATGCGGAACACCGAG-AAGTCAA-ATAATTT-GTACGGATCTTGAATTGACCCCAACAGAAATT-GTAGGAAG-----------ACAGAGTCGG-A--------CAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCA-AAGAAAATCAA--CGAAAAACC------------GGTGAAAGTGCTGGAT-GA----CACG-ATTC----------------GGGAAGAAAACTTTC-----AG------ACCATGC----AAGAGCTTGAAAATATT------GT--------------------------------------CTG---TT--TACCGAATAATTCAGGGATACACAG--G------GTAT--CTGCACTTTGG-TTACC-C-CGACTCTT---AAAAT-------AA---AAA--C-A----A--------G---G---A----------GT-----GACTT---TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGCGAACACAA--CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAAatgaagtacaatcttaa
gi|3 : A-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTG-AAGGAAATCAT--GAAAAAAACCCACCCCAAAATGGTAAAAATGGTGGAT-GTGTGACACT-ATTTAGGAAGACAGCTAGGAG------------TC-----AG------ATCATTT----GAGAGCTTGAAGAAATT------AT-------AGGAATCAGCAA-------ATCCTCTGTTCATTGCATTC--TATTGAATG-CTAAGAAATGCATAG--G---------------CATGTTGG-GAA-C-CATGGGTTTTGATAAA-T---GCAGAA---AAG--CAA----ACTTAAGGAG---G---ATA----TCATGTTA-TAAATTTGCATGTAAAACAC-TG-CAAAA-TAATTT-------G-CAAGTTACT-CCGGCAAGCACAA--TTTT--ATTG--TGAAATGATT---AATTTTC-TCA-AAAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : A-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCA-AAGAAAATCAA--GCAAAATCC------------GGTGAAAGTGCTGGATAG-----CACG-AT-------------------------------TG-----GGGAGACAACCTTAC----GAGAGCTTGACGATATT------ACGGGGATCAG-------CAA-------ATCGTCTGATCACCGCATTC--TATCGGATAATTTAGGAGTGCGCAG--G------GTAT--CTGCACCTTGG-ATA-C-CTCAATTCTTTAAAAA-T---GAAGAA---AAA--CAA----A--------GAGGG---GTT----TCATGTTA-TAAAGTTACTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCCGAGCAAAAATCC-----TTG--TGAAATAATG---AATTTCC-TCA-AAAAaacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|5 : tca--TATATACCCGGG------------TT-ATGATG-AA-----ATATGTAAACGAATTATGGC--ATCGTTTAACAGTATGGAAGTGCAAACGTCCAGCTG-AA-TGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAGATAT-----TTT-ACACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAATC-GCA--------CAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCG--AGGAAAGTCG--TGAAAAACC------------GGTAAAAGTTCTGTAT-GA----CACT-AT-------------------------------TCAAGAAGG--------CAAATTTTAGAATGCGTGAAGAAATTAAGGGAATA------AG-------CAAATCTTCTAT-------TCATCGCATTT--TATCAGATGATTTAGGAATGCATAG--GA------TAT--GTACATCTTGG-ATA-C-CTCGACT-TTAAGAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|6 : tAATGTAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCATGTA--TATAT--CCGGAAATTTTTTATCATT-ATGACATAATATTTA-A-GTAAAT--ATT--GACATGTCATGCAACAGTTAAGAGGTGCAAATGTCCAGC-A-AAATGGTGACATCAGCATCAAATGCAGTGTACTTA--AAGTCACTG-AATTTCGCATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAAT-AGCA--------AAGAAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATAT---GA-CAGTAT------GCCAGGAAAG--AGGCCGGCCA-AAGGAAATTAA--GGAAAGAA
gi|7 : AAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGGC-GTCCGTAAT--AATTAAAACGAAAA--C------------AGTAAAAATGCTGGAT-G------ACGTAT------------------G------------TC-----GGA-----ACCGAAC----GAG-GC-TGAAG------------T-------AG-------CAA-------AT-------TCACCGCAATCTGTGTCGGATGA-TTAAGA-TGC-TAG--GAC----ACACTGGTGCAAGTTAGCGTA-C-C-TGAGT-TTTAAAAAAT---GAAGAA---AAACGCAAT---A--------G---G---ATT----TCATGTTG-T-GACTTA-ATGT-AAACACACG-CGAGAGAAATA-TGACGTCATCAAGTCGAG-CCGCTGA-CACAAT-TCTT--ATTG--T-AAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|8 : caTCGGATAATTACAGAGTGCATAGCCG------GT-C--CTGAAAGTTGG-ATA-A-T-CGACTCTTAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------C---G---ATTATTTCCATGTTTCTAAAATCACATGTAAAACGC-CGCCCAAA-AAATG-TGACGTCT-CAAGTTGCGCCCGCCGACCACAT--CCTTTGTTTGCTTAAAATAATTAACAATTTTC-T-A-GAAAa
gi|9 : TAAGAGTGCATAG--G------GTTC--CTGAAAGTTGG-ATA-CAT-CGACTCTTAAACAAGT---GAAGAA---AAA--CAA----A--------G---AGATATT----TCATGTTT-TAAAATCACATGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCCGACCACAT--CCTT--GTTG--TAAAATAATT---AATTTTC-T-A-GAAAaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 11 111111111 2222 11 11 22 11 111111 3333333333333 5555555555555 11111 111 111111 333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4444444444444 1 11111 111 3333333333333333333333333333 11
lowQualScore : 0000 0 7 999 1 1 3 33 7 777777777 1 1 1 4444 1 33 11 11 0 4 8 11 0 0 222222 0 99 77 1 3 55 3 1 1 0 1 77 9999999999999 1 99 1 7 3333333333333 5 1 6 88888 111 5 5 55 1 1 5 666666 3 1 4 88 55 444444444444 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 99 0 4 2 66 9999999999999 1 66 5 5 5 1 6 8 22222 000 77 6666666666666666666666666666 88 3 1 88 7 5 5 3 2 5 444 55 5 2 00 66 66 777 4 1 99 1
lowQualScore : .... . . ... . . . .. . ......... . . . .... . .. .. .. . . . .. . . ...... . .. .. . . .. . . . . . .. ............. . .. . . ............. . . . ..... ... . . .. . . . ...... . . . .. .. ............ . ................................................................................................................................. . .. . . . .. ............. . .. . . . . . . ..... ... .. ............................ .. . . .. . . . . . . ... .. . . .. .. .. ... . . .. .
lowQualScore : 0000 7 3 333 0 0 3 00 3 000000000 0 0 0 0000 2 88 00 00 8 0 0 44 8 8 444444 8 44 66 4 8 22 2 4 0 7 0 77 5555555555555 0 22 5 8 6666666666666 2 0 7 77777 777 0 0 22 0 2 0 444444 0 7 0 77 00 222222222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 1 2 2 99 1111111111111 0 11 0 0 0 4 5 4 44444 000 99 9999999999999999999999999999 77 6 0 00 1 0 0 4 2 0 444 22 0 9 66 11 11 888 4 1 99 0
consensus : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAATCAA-CGAAAAACC------------GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------AT-------AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
Reference ( family-1805 ) : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGGAAATCAA-CGAAAAANC------------GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------AT-------AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
gi|1 : AAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTTT--GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGTATGACATGATATGTATATGTAAATGAATTACGACATATCGTGCAACATTTAGGAGATGCAAATGTCTAGCG-----------------TCGAATGCGTCGCGCTGAA-AAGTTA-T-A-AAA---GTACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAATCAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCGTAATAAATTAA-CAAGAAAAC------------AGTAAAAATGCTGGAT-G------ACG-AT------------------G------------TC-GG------ACCGAA----CGAGA--GCGTGAAG--------------T-------AG-------CAA-------AT-------TCACCGCAATC--TGTCGGATGATTTAAGAATGCTTAG--GACACATGTATG--TGCAAGTTAC-GTA-C-C-TGAGT-TTAAAAAAAT---GAAGAA---AAA--CAA----A--------G---G---ATT----TCATGTTG-TGAACTTA-ATGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCTGAGCACAA--TCTT--ATTG--TAAAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|10 : aAAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCTA--GATACACAGTTA--TATA--CCCAGAAAATTTT-ATC-----GATATAATATA-ATATGTAGATGAATTATGAAATATCGTGCGAAAGTATGGGGATGCAAATACCCAGTGAAATGGCTACGTCAGCGTCAAACGCGGAGCAGCGAG-AAGTCA-C-A-----------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|11 : gGCTTTGTTTA--GTTACTCATTTA--CATA--CCCGGAAAATTTT-ATCTTTATGGTGTAATATTTA------AATGAATTATGACATA----------------------AAA-GCCCAGCAAAATGGCGACATCAGCTTCAAATGCAGCACAACGAGTAATTCA-TTA-GATTTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACA-AAT---TG--------CAGATATATTATTCGCTTTCTGGTGTT------------CA-AAT-TATTTT-CTGAAGGGTATGCGAA-CAATAg
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTGCG-CTAGAGAGCACAA--CCTT--ATTG--TAAAACGACT---GATTTCC-TCATTAAAGATAA
gi|17 : GCACAA--CCTT--ATTG--CAAAATAACT---AATTTCC-TCATTCAAGATAAatgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
gi|2 : GCGTAAAATGCGGAACACCGAG-AAGTCA-A-ATAATTT-GTACGGATCTTGAATTGACCCCAACAGAAATT-GTAGGAAG-----------ACAGAGTCGG-A--------CAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCAAAGAAAATCAA-CGAAAAACC------------GGTGAAAGTGCTGGAT-GA----CACG-ATTC----------------GGGAAGAAAACTTTC-AG------ACCATG----CAAGA--GCTTGAAA-ATA-TT------GT--------------------------------------CTG---TT--TACCGAATAATTCAGGGATACACAG--G------GTATC--TGCACTTTGG-TTACC-C-CGACTCTT---AAAAT-------AA---AAA--C-A----A--------G---G---A----------GT-----GACTT---TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGCGAACACAA--CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAAatgaagtacaatcttaa
gi|3 : A-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTGAAGGAAATCAT-GAAAAAAACCCACCCCAAAATGGTAAAAATGGTGGAT-GTGTGACACT-ATTTAGGAAGACAGCTAGGAG------------TC-AG------ATCATT----TGAGA--GCTTGAAG-A-AATT------AT-------AGGAATCAGCAA-------ATCCTCTGTTCATTGCATTC--TATTGAATG-CTAAGAAATGCATAG--G---------------CATGTTGG-GAA-C-CATGGGTTTTGATAAA-T---GCAGAA---AAG--CAA----ACTTAAGGAG---G---ATA----TCATGTTA-TAAATTTGCATGTAAAACAC-TG-CAAAA-TAATTT-------G-CAAGTTACT-CCGGCAAGCACAA--TTTT--ATTG--TGAAATGATT---AATTTTC-TCA-AAAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : A-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCAAAGAAAATCAA-GCAAAATCC------------GGTGAAAGTGCTGGATAG-----CACG-AT-------------------------------TG-GGGAGACAACCTTA----CGAGA--GCTTGACG-ATA-TT------ACGGGGATCAG-------CAA-------ATCGTCTGATCACCGCATTC--TATCGGATAATTTAGGAGTGCGCAG--G------GTATC--TGCACCTTGG-ATA-C-CTCAATTCTTTAAAAA-T---GAAGAA---AAA--CAA----A--------GAGGG---GTT----TCATGTTA-TAAAGTTACTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCCGAGCAAAAATCC-----TTG--TGAAATAATG---AATTTCC-TCA-AAAAaacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|5 : tca--TATATACCCGGG------------TTATGATG-AA-----ATATGTAAACGAATTATGGCAT--CGTTTAACAGTATGGAAGTGCAAACGTCCAGCTGAATGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAGATA-T-----TTT-ACACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAATC-GCA--------CAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCGAGGAAAGTC-G-TGAAAAACC------------GGTAAAAGTTCTGTAT-GA----CACT-AT-------------------------------TCAAG------AAGGCAAATTTTAGAATGCGTGAAGAA-A-TTAAGGGAATA------AG-------CAAATCTTCTAT-------TCATCGCATTT--TATCAGATGATTTAGGAATGCATAG--GA------TATG--TACATCTTGG-ATA-C-CTCGACT-TTAAGAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|6 : tAATGTAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCATGTA--TATAT--CCGGAAATTTTTTATCATTATGACATAATATTTA-A-GTAAAT--ATT--GACATGTCATGCAACAGTTAAGAGGTGCAAATGTCCAGCAAAATGGTGACATCAGCATCAAATGCAGTGTACTTA--AAGTCACT-G-AATTTCGCATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAAT-AGCA--------AAGAAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATAT---GA-CAGTAT------GCCAGGAAAG--AGGCCGGCCAAAGGAAATTAA-GGAAAGA
gi|7 : AAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGGC-GTCCGTAATAATTAAAACGAAAA--C------------AGTAAAAATGCTGGAT-G------ACGTAT------------------G------------TC-GGA-----ACCGAA----CGAG---GC-TGAAG--------------T-------AG-------CAA-------AT-------TCACCGCAATCTGTGTCGGATGA-TTAAGA-TGC-TAG--GAC----ACACTGGTGCAAGTTAGCGTA-C-C-TGAGTTTT-AAAAAAT---GAAGAA---AAACGCAAT---A--------G---G---ATT----TCATGTTG-T-GACTTA-ATGT-AAACACACG-CGAGAGAAATA-TGACGTCATCAAGTCGAG-CCGCTGA-CACAAT-TCTT--ATTG--T-AAATAATT---AATTTTG-TCA-CAAAGTTAAa
gi|8 : caTCGGATAATTACAGAGTGCATAGCCG------GT-CC--TGAAAGTTGG-ATA-A-T-CGACTCTTAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------C---G---ATTATTTCCATGTTTCTAAAATCACATGTAAAACGC-CGCCCAAA-AAATG-TGACGTCT-CAAGTTGCGCCCGCCGACCACAT--CCTTTGTTTGCTTAAAATAATTAACAATTTTC-T-A-GAAAa
gi|9 : TAAGAGTGCATAG--G------GTTCC--TGAAAGTTGG-ATA-CAT-CGACTCTTAAACAAGT---GAAGAA---AAA--CAA----A--------G---AGATATT----TCATGTTT-TAAAATCACATGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCCGACCACAT--CCTT--GTTG--TAAAATAATT---AATTTTC-T-A-GAAAaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 11 111111111 2222 11 11 22 11 111111 3333333333333 5555555555555 11111 111 111111 2222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4444444444444 1 1 111 111 3333333333333 111 1111 11
lowQualScore : 0000 0 7 999 1 1 3 33 7 777777777 1 1 1 4444 1 33 11 11 0 4 8 11 0 0 222222 0 99 77 1 3 55 3 1 1 0 1 77 9999999999999 1 99 1 7 3333333333333 5 1 6 88888 111 5 5 55 1 1 5 666666 3 1 1 5 11 7777777777777777 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 99 0 4 2 66 9999999999999 1 66 5 5 5 1 6 1 2 000 000 77 9999999999999 000 2222 88 3 1 88 7 5 5 3 2 5 444 55 5 2 00 66 66 777 4 1 99 1
lowQualScore : .... . . ... . . . .. . ......... . . . .... . .. .. .. . . . .. . . ...... . .. .. . . .. . . . . . .. ............. . .. . . ............. . . . ..... ... . . .. . . . ...... . . . . .. ................ . .................................................................................................................................. . .. . . . .. ............. . .. . . . . . . . ... ... .. ............. ... .... .. . . .. . . . . . . ... .. . . .. .. .. ... . . .. .
lowQualScore : 0000 7 3 333 0 0 3 00 3 000000000 0 0 0 0000 2 88 00 00 8 0 0 44 8 8 444444 8 44 66 4 8 22 2 4 0 7 0 77 5555555555555 0 22 5 8 6666666666666 2 0 7 77777 777 0 0 22 0 2 0 444444 0 7 0 7 99 4444444444444444 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 1 2 2 99 1111111111111 0 11 0 0 0 4 5 2 3 000 000 99 6666666666666 000 1111 77 6 0 00 1 0 0 4 2 0 444 22 0 9 66 11 11 888 4 1 99 0
consensus : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
Reference ( family-1805 ) : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
gi|1 : AAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTTT--GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGTATGACATGATATGTATATGTAAATGAATTACGACATATCGTGCAACATTTAGGAGATGCAAATGTCTAGCG-----------------TCGAATGCGTCGCGCTGAA-AAGTTA-T-A-AAA---GTACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAATCAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCGTAATAAAT-TAACAAGAAA--------AC-----AGTAAAAATGCTGGAT-G------ACG-AT------------------G------------TC-GG------ACCGAA----CGAGA--GCGTGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATC--TGTCGGATGATTTAAGAATGCTTAG--GACACATGTATG--TGCAAGTTAC-GTA-C-C-TGAGT-TTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTG-TGAACTTA-ATGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCTGAGCACAA--TCTT--ATTG--TAAAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|10 : aAAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCTA--GATACACAGTTA--TATA--CCCAGAAAATTTT-ATC-----GATATAATATA-ATATGTAGATGAATTATGAAATATCGTGCGAAAGTATGGGGATGCAAATACCCAGTGAAATGGCTACGTCAGCGTCAAACGCGGAGCAGCGAG-AAGTCA-C-A-----------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|11 : gGCTTTGTTTA--GTTACTCATTTA--CATA--CCCGGAAAATTTT-ATCTTTATGGTGTAATATTTA------AATGAATTATGACATA----------------------AAA-GCCCAGCAAAATGGCGACATCAGCTTCAAATGCAGCACAACGAGTAATTCA-TTA-GATTTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACA-AAT---TG--------CAGATATATTATTCGCTTTCTGGTGTT------------CA-AAT-TATTTT-CTGAAGGGTATGCGAA-CAATAg
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTGCG-CTAGAGAGCACAA--CCTT--ATTG--TAAAACGACT---GATTTCC-TCATTAAAGATAA
gi|17 : GCACAA--CCTT--ATTG--CAAAATAACT---AATTTCC-TCATTCAAGATAAatgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
gi|2 : GCGTAAAATGCGGAACACCGAG-AAGTCA-A-ATAATTT-GTACGGATCTTGAATTGACCCCAACAGAAATT-GTAGGAAG-----------ACAGAGTCGG-A--------CAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCAAAGAAAAT-CAACGAAAAA--------CC-----GGTGAAAGTGCTGGAT-GA----CACG-ATTC----------------GGGAAGAAAACTTTC-AG------ACCATG----CAAGA--GCTTGAAA-ATA-TT------G-------T--------------------------------CTG---TT--TACCGAATAATTCAGGGATACACAG--G------GTATC--TGCACTTTGG-TTACC-C-CGACTCTT---AAAAT-------AA---AAA--C-A----A--------GG---A----------GT-----GACTT---TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGCGAACACAA--CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAAatgaagtacaatcttaa
gi|3 : A-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTGAAGGAAAT-CA-TGAAAAAAACCCACCCCAAAATGGTAAAAATGGTGGAT-GTGTGACACT-ATTTAGGAAGACAGCTAGGAG------------TC-AG------ATCATT----TGAGA--GCTTGAAG-A-AATT------A-------T-AGGAATCAGCAA-------ATCCTCTGTTCATTGCATTC--TATTGAATG-CTAAGAAATGCATAG--G---------------CATGTTGG-GAA-C-CATGGGTTTTGATAAA-T---GCAGAA---AAG--CAA----ACTTAAGGAGG---ATA----TCATGTTA-TAAATTTGCATGTAAAACAC-TG-CAAAA-TAATTT-------G-CAAGTTACT-CCGGCAAGCACAA--TTTT--ATTG--TGAAATGATT---AATTTTC-TCA-AAAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : A-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCAAAGAAAAT-CAAGCAAAAT--------CC-----GGTGAAAGTGCTGGATAG-----CACG-AT-------------------------------TG-GGGAGACAACCTTA----CGAGA--GCTTGACG-ATA-TT------ACGGGGATC-AG-------CAA-------ATCGTCTGATCACCGCATTC--TATCGGATAATTTAGGAGTGCGCAG--G------GTATC--TGCACCTTGG-ATA-C-CTCAATTCTT-TAAAAAT---GAAGAA---AAA--CAA----AGAG-----GG---GTT----TCATGTTA-TAAAGTTACTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCCGAGCAAAAATCC-----TTG--TGAAATAATG---AATTTCC-TCA-AAAAaacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|5 : tca--TATATACCCGGG------------TTATGATG-AA-----ATATGTAAACGAATTATGGCAT--CGTTTAACAGTATGGAAGTGCAAACGTCCAGCTGAATGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAGATA-T-----TTT-ACACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAATC-GCA--------CAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCGAGGAAAGT-C-GTGAAAAA--------CC-----GGTAAAAGTTCTGTAT-GA----CACT-AT-------------------------------TCAAG------AAGGCAAATTTTAGAATGCGTGAAGAA-A-TTAAGGGAA-------TAAG-------CAAATCTTCTAT-------TCATCGCATTT--TATCAGATGATTTAGGAATGCATAG--GA------TATG--TACATCTTGG-ATA-C-CTCGACT-TTAAGAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|6 : tAATGTAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCATGTA--TATAT--CCGGAAATTTTTTATCATTATGACATAATATTTA-A-GTAAAT--ATT--GACATGTCATGCAACAGTTAAGAGGTGCAAATGTCCAGCAAAATGGTGACATCAGCATCAAATGCAGTGTACTTA--AAGTCACT-G-AATTTCGCATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAAT-AGCA--------AAGAAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATAT---GA-CAGTAT------GCCAGGAAAG--AGGCCGGCCAAAGGAAAT-TAAGGAAAGA--------
gi|7 : AAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGG-CGTCCGTAATAATTAAAACGAAAA----------C-----AGTAAAAATGCTGGAT-G------ACGTAT------------------G------------TC-GGA-----ACCGAA----CGAG---GC-TGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATCTGTGTCGGATGA-TTAAGA-TGC-TAG--GAC----ACACTGGTGCAAGTTAGCGTA-C-C-TGAGTTTT-AAAAAAT---GAAGAA---AAACGCAAT---A--------GG---ATT----TCATGTTG-T-GACTTA-ATGT-AAACACACG-CGAGAGAAATA-TGACGTCATCAAGTCGAG-CCGCTGA-CACAAT-TCTT--ATTG--T-AAATAATT---AATTTTG-TCA-CAAAGTTAAa
gi|8 : caTCGGATAATTACAGAGTGCATAGCCG------GT-CC--TGAAAGTTGG-ATA-A-T-CGACTCTTAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------CG---ATTATTTCCATGTTTCTAAAATCACATGTAAAACGC-CGCCCAAA-AAATG-TGACGTCT-CAAGTTGCGCCCGCCGACCACAT--CCTTTGTTTGCTTAAAATAATTAACAATTTTC-T-A-GAAAa
gi|9 : TAAGAGTGCATAG--G------GTTCC--TGAAAGTTGG-ATA-CAT-CGACTCTTAAACAAGT---GAAGAA---AAA--CAA----A--------GAGATATT----TCATGTTT-TAAAATCACATGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCCGACCACAT--CCTT--GTTG--TAAAATAATT---AATTTTC-T-A-GAAAaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 11 111111111 2222 11 11 22 11 111111 3333333333333 5555555555555 11111 111 111111 2222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4444444444444 1 1 111 111 3333333333333 111 1111 11
lowQualScore : 0000 0 7 999 1 1 3 33 7 777777777 1 1 1 4444 1 33 11 11 0 4 8 11 0 0 222222 0 99 77 1 3 55 3 1 1 0 1 77 9999999999999 1 99 1 7 3333333333333 5 1 6 88888 111 5 5 55 1 1 5 666666 3 1 1 5 11 7777777777777777 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 99 0 4 2 66 9999999999999 1 66 5 5 5 1 6 1 2 000 000 77 9999999999999 000 2222 88 3 1 88 7 5 5 3 2 5 444 55 5 2 00 66 66 777 4 1 99 1
lowQualScore : .... . . ... . . . .. . ......... . . . .... . .. .. .. . . . .. . . ...... . .. .. . . .. . . . . . .. ............. . .. . . ............. . . . ..... ... . . .. . . . ...... . . . . .. ................ . .................................................................................................................................. . .. . . . .. ............. . .. . . . . . . . ... ... .. ............. ... .... .. . . .. . . . . . . ... .. . . .. .. .. ... . . .. .
lowQualScore : 0000 7 3 333 0 0 3 00 3 000000000 0 0 0 0000 2 88 00 00 8 0 0 44 8 8 444444 8 44 66 4 8 22 2 4 0 7 0 77 5555555555555 0 22 5 8 6666666666666 2 0 7 77777 777 0 0 22 0 2 0 444444 0 7 0 7 99 4444444444444444 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 1 2 2 99 1111111111111 0 11 0 0 0 4 5 2 3 000 000 99 6666666666666 000 1111 77 6 0 00 1 0 0 4 2 0 444 22 0 9 66 11 11 888 4 1 99 0
consensus : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
Reference ( family-1805 ) : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
gi|1 : AAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTTT--GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGTATGACATGATATGTATATGTAAATGAATTACGACATATCGTGCAACATTTAGGAGATGCAAATGTCTAGCG-----------------TCGAATGCGTCGCGCTGAA-AAGTTA-T-A-AAA---GTACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAATCAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCGTAATAAAT-TAACAAGAAA--------AC-----AGTAAAAATGCTGGAT-G------ACG-AT------------------G------------TC-GG------ACCGAA----CGAGA--GCGTGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATC--TGTCGGATGATTTAAGAATGCTTAG--GACACATGTATG--TGCAAGTTAC-GTA-C-C-TGAGT-TTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTG-TGAACTTA-ATGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCTGAGCACAA--TCTT--ATTG--TAAAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|10 : aAAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCTA--GATACACAGTTA--TATA--CCCAGAAAATTTT-ATC-----GATATAATATA-ATATGTAGATGAATTATGAAATATCGTGCGAAAGTATGGGGATGCAAATACCCAGTGAAATGGCTACGTCAGCGTCAAACGCGGAGCAGCGAG-AAGTCA-C-A-----------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|11 : gGCTTTGTTTA--GTTACTCATTTA--CATA--CCCGGAAAATTTT-ATCTTTATGGTGTAATATTTA------AATGAATTATGACATA----------------------AAA-GCCCAGCAAAATGGCGACATCAGCTTCAAATGCAGCACAACGAGTAATTCA-TTA-GATTTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACA-AAT---TG--------CAGATATATTATTCGCTTTCTGGTGTT------------CA-AAT-TATTTT-CTGAAGGGTATGCGAA-CAATAg
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTGCG-CTAGAGAGCACAA--CCTT--ATTG--TAAAACGACT---GATTTCC-TCATTAAAGATAA
gi|17 : GCACAA--CCTT--ATTG--CAAAATAACT---AATTTCC-TCATTCAAGATAAatgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
gi|2 : GCGTAAAATGCGGAACACCGAG-AAGTCA-A-ATAATTT-GTACGGATCTTGAATTGACCCCAACAGAAATT-GTAGGAAG-----------ACAGAGTCGG-A--------CAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCAAAGAAAAT-CAACGAAAAA--------CC-----GGTGAAAGTGCTGGAT-GA----CACG-ATTC----------------GGGAAGAAAACTTTC-AG------ACCATG----CAAGA--GCTTGAAA-ATA-TT------G-------T--------------------------------CTG---TT--TACCGAATAATTCAGGGATACACAG--G------GTATC--TGCACTTTGG-TTACC-C-CGACTCTT---AAAAT-------AA---AAA--C-A----A--------GG---A----------GT-----GACTT---TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGCGAACACAA--CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAAatgaagtacaatcttaa
gi|3 : A-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTGAAGGAAAT-CA-TGAAAAAAACCCACCCCAAAATGGTAAAAATGGTGGAT-GTGTGACACT-ATTTAGGAAGACAGCTAGGAG------------TC-AG------ATCATT----TGAGA--GCTTGAAG-A-AATT------A-------T-AGGAATCAGCAA-------ATCCTCTGTTCATTGCATTC--TATTGAATG-CTAAGAAATGCATAG--G---------------CATGTTGG-GAA-C-CATGGGTTTTGATAAA-T---GCAGAA---AAG--CAA----ACTTAAGGAGG---ATA----TCATGTTA-TAAATTTGCATGTAAAACAC-TG-CAAAA-TAATTT-------G-CAAGTTACT-CCGGCAAGCACAA--TTTT--ATTG--TGAAATGATT---AATTTTC-TCA-AAAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : A-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCAAAGAAAAT-CAAGCAAAAT--------CC-----GGTGAAAGTGCTGGATAG-----CACG-AT-------------------------------TG-GGGAGACAACCTTA----CGAGA--GCTTGACG-ATA-TT------ACGGGGATC-AG-------CAA-------ATCGTCTGATCACCGCATTC--TATCGGATAATTTAGGAGTGCGCAG--G------GTATC--TGCACCTTGG-ATA-C-CTCAATTCTT-TAAAAAT---GAAGAA---AAA--CAA----AGAG-----GG---GTT----TCATGTTA-TAAAGTTACTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCCGAGCAAAAATCC-----TTG--TGAAATAATG---AATTTCC-TCA-AAAAaacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|5 : tca--TATATACCCGGG------------TTATGATG-AA-----ATATGTAAACGAATTATGGCAT--CGTTTAACAGTATGGAAGTGCAAACGTCCAGCTGAATGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAGATA-T-----TTT-ACACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAATC-GCA--------CAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCGAGGAAAGT-C-GTGAAAAA--------CC-----GGTAAAAGTTCTGTAT-GA----CACT-AT-------------------------------TCAAG------AAGGCAAATTTTAGAATGCGTGAAGAA-A-TTAAGGGAA-------TAAG-------CAAATCTTCTAT-------TCATCGCATTT--TATCAGATGATTTAGGAATGCATAG--GA------TATG--TACATCTTGG-ATA-C-CTCGACT-TTAAGAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|6 : tAATGTAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCATGTA--TATAT--CCGGAAATTTTTTATCATTATGACATAATATTTA-A-GTAAAT--ATT--GACATGTCATGCAACAGTTAAGAGGTGCAAATGTCCAGCAAAATGGTGACATCAGCATCAAATGCAGTGTACTTA--AAGTCACT-G-AATTTCGCATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAAT-AGCA--------AAGAAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATAT---GA-CAGTAT------GCCAGGAAAG--AGGCCGGCCAAAGGAAAT-TAAGGAAAGA--------
gi|7 : AAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGG-CGTCCGTAATAATTAAAACGAAAA----------C-----AGTAAAAATGCTGGAT-G------ACGTAT------------------G------------TC-GGA-----ACCGAA----CGAG---GC-TGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATCTGTGTCGGATGA-TTAAGA-TGC-TAG--GAC----ACACTGGTGCAAGTTAGCGTA-C-C-TGAGTTTT-AAAAAAT---GAAGAA---AAACGCAAT---A--------GG---ATT----TCATGTTG-T-GACTTA-ATGT-AAACACACG-CGAGAGAAATA-TGACGTCATCAAGTCGAG-CCGCTGA-CACAAT-TCTT--ATTG--T-AAATAATT---AATTTTG-TCA-CAAAGTTAAa
gi|8 : caTCGGATAATTACAGAGTGCATAGCCG------GT-CC--TGAAAGTTGG-ATA-A-T-CGACTCTTAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------CG---ATTATTTCCATGTTTCTAAAATCACATGTAAAACGC-CGCCCAAA-AAATG-TGACGTCT-CAAGTTGCGCCCGCCGACCACAT--CCTTTGTTTGCTTAAAATAATTAACAATTTTC-T-A-GAAAa
gi|9 : TAAGAGTGCATAG--G------GTTCC--TGAAAGTTGG-ATA-CAT-CGACTCTTAAACAAGT---GAAGAA---AAA--CAA----A--------GAGATATT----TCATGTTT-TAAAATCACATGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCCGACCACAT--CCTT--GTTG--TAAAATAATT---AATTTTC-T-A-GAAAaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
blockSeqs : GATG A ACA T T T CA A TGAGAATAT A T C TTG T TA . TA A T TT AATAT AT AT A T GA C G G A GT TTAGATTTTGA A AA C T CGGA T T C CTAAA GCT T G AT G G A ATGTAG C A A A AC AAACCCACCCCAAAAT A TGTGACACTATTTAGGAAGACAGCTAGGAGTCAGATCATTTGAGAGCTTGAAGAAATTATAGGAATCAGCAAATCCTCTGT T TG A A CC ACACACTGG C CG C A A C C G A TGA TAA CG ACTTAAGGA GAT ATTT TC A C GC A A C G G G TTT AT C G AT TG CT AAC T C TT A
blockSeqs : . A . A A . G . . T C T CA C . . T A . AT ATAT GT AT G C AA C A T C G CTGAATTTCGC C . A G CGCA C T G TTAAA . . . C G T . . G G G . AG ACC . ACACTATTCAAGAAGGCAAATTTTAGAATGCGTGAAGAAATTAAGGGAATAAGCAAATCTTCTAT T . A A . GTATC T T . . T G T A A . . . GATGA . . A A T AC G . . A A . GTT G . G T . . . . C TT A
blockSeqs : T . . . T . T TTAA A TA G T TG A G G A G AATAATTTGT T . G G AGCA A T G CACC . . . C T G . . C G A . GT TCC . CACGATTGGGGAGACAACCTTACGAGAGCTTGACGATATTACGGGGATCAGCAAATCGTCTGA T . G G . GTATC C G . . T T C A A . . . AGAG . . A A G AC A . . G A . TTT G . A . . . . . C T G
blockSeqs : . . . . . TTA . . . . AA T A G C G TTTTAC A . A A TG C C C AAA . . . C G T . . C A A . AG ACC . ACACGATTCGGGAAGAAAACTTTCAGACCATGCAAGAGCTTGAAAATATTGT A . A A . ATATG T A . . . C T A G . . . TA . . G A C AC A . . G G . GTT G . G . . . . . C A T
blockSeqs : A T . CA T . . . . A . T . . . C G A . . G G G . AC C . ACGTATGTCGGAACCGAACGAGGCTGAAGTAGCAAAT . . G A . GTTCC A A . . . G C . G . . . A . . T . A A . . . C G . TT G . G . . . . . C A
blockSeqs : . . T T A . . . T T . T G A . GTCC A A . . . C C . . . . . A . . . . A . . . . A A . AT T . C . . . . . C C
blockSeqs : . . . T A . . . . . A A . . . C . . . . . . . GT T . C . . . . . . G
blockSeqs : . . . . . . . G
blockSeqCons : ** T* TTA*** AA CGATTTTGN**** CGCA********* GTATC******** AC
originalCons : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATATACCCGGAAAATTTT-ATCATTATGACGTAATATNTATATGTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCA-T-A-AATTT-GCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCAGCG--------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GA-----GTACC--TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
finalCons : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATAT-CCCGGAAAATTTT-ATCATTATGACGTAATATTTA---GTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCAAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCACGATTTTGN----ACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCGCA---------CAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--GGTATC--------TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 11 111111111 2222 11 11 22 333333 4444444444444 4444444444 11111 111 111111 2222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222222 1 1 111 111 3333333333333 111 1111 11
lowQualScore : 0000 0 7 999 1 1 3 33 7 777777777 1 1 1 4444 1 33 11 88 0 4 8 55 888888 0 99 77 1 3 9 3 1 0 1 77 5555555555555 1 99 1 7 0000000000 5 1 6 88888 111 5 5 55 1 1 5 666666 3 1 1 5 11 7777777777777777 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 99 0 4 2 66 666666666666666 1 66 5 5 5 1 6 1 2 000 000 77 9999999999999 000 2222 88 3 1 88 7 5 5 3 2 5 444 55 5 2 00 66 66 777 4 1 99 1
lowQualScore : .... . . ... . . . .. . ......... . . . .... . .. .. .. . . . .. ...... . .. .. . . . . . . . .. ............. . .. . . .......... . . . ..... ... . . .. . . . ...... . . . . .. ................ . .................................................................................................................................. . .. . . . .. ............... . .. . . . . . . . ... ... .. ............. ... .... .. . . .. . . . . . . ... .. . . .. .. .. ... . . .. .
lowQualScore : 0000 7 3 333 0 0 3 00 3 000000000 0 0 0 0000 2 88 00 44 8 0 0 00 666666 8 44 66 4 8 0 2 4 7 0 77 5555555555555 0 22 5 8 2222222222 2 0 7 77777 777 0 0 22 0 2 0 444444 0 7 0 7 99 4444444444444444 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 1 2 2 99 666666666666666 0 11 0 0 0 4 5 2 3 000 000 99 6666666666666 000 1111 77 6 0 00 1 0 0 4 2 0 444 22 0 9 66 11 11 888 4 1 99 0
consensus : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATAT-CCCGGAAAATTTT-ATCGTTATGACGTAATATTTA---GTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCGAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCAT--AAT--TTTGCACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCG---------CACAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--G------GTAC-C---TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
Reference ( family-1805 ) : NAAATAAAATAG---CGAATTAAAATAATTGAAACGGAATTACAATCACGGNAAAANAA-ATCATTNGTTTCATTTCTGAGAGTA-ANTTNTANA--GAGGAGTTTTGTTTA--GATACTCATTTA--TATAT-CCCGGAAAATTTT-ATCATTATGACGTAATATTTA---GTAAATGAATTATGACATATCGTGCAACAGTNNGGAGGTGCAAATGTCCAGCAAAATGGCGACGTCAGCGTCAAACGCGGCGCACCGAG-AAGTCAC--GAT--TTTGNACGGAACTCGGATTGACCCCAACAGAGANTCATAAGAAGTT--AAAATTGACAGAATCG---------CACAGAAATGTTTCTCGCNCCCTGGTGTTCAAATGGC---ACA-AAT-TATTTT-CTGAANGATATGAGGA-CAATAC------GCCAGGAAAGANAGGCCGGCCGAAGNAAAT-CAACGAAAAA--------CC-----GGTAAAAGTGCTGGAT-G-----CACG-AT------------------G------------TC-GG------ACCGNA----CGAGA--GCTTGAAG-A-A-TT------A-------T-AG-------CAA-------AT-------TCACCGCATTC--TATCGGATGATTTAGGAGTGCATAG--G------GTAT-C---TGCANGTTGG-GTA-C-C-CGACTCTTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTN-TAAANTTACATGTAAAACGC-CG-CGAGA-AAATNTTGACGTCG-CAAGTTGCG-CCGCCGAGCACAA--CCTT--ATTG--TAAAATAATT---AATTTTC-TCA-NAAAGNTAA
gi|1 : AAAAAAAATAG---CGAATTAAAATAATTGAAGCGGAATTACA-TCACGGGAAAACAG-ATTATTAGTTTCATTTCTGAGAGTA-ACTTATAAA--GAGGAGATTTGTTTT--GATACTCATTTACGTATATACCCAGAAAGTTTT-ATCAGTATGACATGATATGTATATGTAAATGAATTACGACATATCGTGCAACATTTAGGAGATGCAAATGTCTAGC-----------------GTCGAATGCGTCGCGCTGAA-AAGTTAT--AAA--A--GTACGGAACGCAGATTTACCCCAACATAGACTCATAAGAAGTT--AAAATTTACAAAATCAAAGAGAATTTACAAAAATGTTTCTCGCACCCTGGTGTTCACCTGGC---ACA-AAT-TATTTT-CTGAATGACGTGAGAA-CAATAC------GCCAGGAAAGAGAGATCGCCCGTAATAAAT-TAACAAGAAA--------AC-----AGTAAAAATGCTGGAT-G------ACG-AT------------------G------------TC-GG------ACCGAA----CGAGA--GCGTGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATC--TGTCGGATGATTTAAGAATGCTTAG--GACACATGTAT-G---TGCAAGTTAC-GTA-C-C-TGAGT-TTAAAAAAAT---GAAGAA---AAA--CAA----A--------GG---ATT----TCATGTTG-TGAACTTA-ATGTAAAACAC-CG-CGAGA-AAATATGGACGTCA-CAAGTCGAG-CCGCTGAGCACAA--TCTT--ATTG--TAAAATAATT---AATTTTG-TCA-CAAAGTTAA
gi|10 : aAAATAAAATA----CGAATTAAAATTATTGAAATGGAATTAAAATC---GTAAAATAATATCATTCATTCC-TTTCTGAGAATATAATTTTACATTG-GGAGTTTTTCCTA--GATACACAGTTA--TATA--CCCAGAAAATTTT-ATCGATATAATATAATAT------GTAGATGAATTATGAAATATCGTGCGAAAGTATGGGGATGCAAATACCCAGTGAAATGGCTACGTCAGCGTCAAACGCGGAGCAGCGAG-AAGTCAC--A-----------GGATCTCAAATTGACCCAAACAGAGAATCAGAAGCTGTT--ACAATTGACATAA
gi|11 : gGCTTTGTTTA--GTTACTCATTTA--CATA--CCCGGAAAATTTT-ATCTTTATGGTGTAATATTTA------AATGAATTATGACATA----------------------AAA-GCCCAGCAAAATGGCGACATCAGCTTCAAATGCAGCACAACGAGTAATTCATTAGAT--TTTGAATGGAACTCATATTGACTCCAACAGAGACTCACAAGAAGTT--AAAATTGACA-AATTG-----------CAGATATATTATTCGCTTTCTGGTGTT------------CA-AAT-TATTTT-CTGAAGGGTATGCGAA-CAATAg
gi|13 : AATAC-CA-CGAGA-AAAGTTTGACGTCG-CAAGTTGCG-CTAGAGAGCACAA--CCTT--ATTG--TAAAACGACT---GATTTCC-TCATTAAAGATAA
gi|17 : GCACAA--CCTT--ATTG--CAAAATAACT---AATTTCC-TCATTCAAGATAAatgaagtacaatcttaagatttggatactggttaacaatggtttattgttaata
gi|2 : GCGTAAAATGCGGAACACCGAG-AAGTCA---AATAATTTGTACGGATCTTGAATTGACCCCAACAGAAATT-GTAGGAAG-----------ACAGAGTCG---------GACAGAAATGTTCCTCTCTCCGTGGTGTCTAAATGGC---ACA-AAC-TATTTT-CTGGAGGTTGTGAGGA-CAATAG------GCCAGGAAAGACAGGCCGACCAAAGAAAAT-CAACGAAAAA--------CC-----GGTGAAAGTGCTGGAT-GA----CACG-ATTC----------------GGGAAGAAAACTTTC-AG------ACCATG----CAAGA--GCTTGAAA-ATA-TT------G-------T--------------------------------CTG---TT--TACCGAATAATTCAGGGATACACAG--G------GTAT-C---TGCACTTTGG-TTACC-C-CGACTCTT---AAAAT-------AA---AAA--C-A----A--------GG---A----------GT-----GACTT---TGT---ATGC-CG-C-AAA-AAATGTTGACATAG-CAAGTTGCG-CCGGCGAACACAA--CTTT--GTTG--TAAAATATTT---AATTTTCTTCG-TAAAGGTAAatgaagtacaatcttaa
gi|3 : A-AAT-AATTTT--TGAATAGTATGAGGA-CAATAT------GCCAAGAAAGAGAGGCCAGCTGAAGGAAAT-CA-TGAAAAAAACCCACCCCAAAATGGTAAAAATGGTGGAT-GTGTGACACT-ATTTAGGAAGACAGCTAGGAG------------TC-AG------ATCATT----TGAGA--GCTTGAAG-A-AATT------A-------T-AGGAATCAGCAA-------ATCCTCTGTTCATTGCATTC--TATTGAATG-CTAAGAAATGCATAG--G-----------------CATGTTGG-GAA-C-CATGGGTTTTGATAAA-T---GCAGAA---AAG--CAA----ACTTAAGGAGG---ATA----TCATGTTA-TAAATTTGCATGTAAAACAC-TG-CAAAA-TAATTT-------G-CAAGTTACT-CCGGCAAGCACAA--TTTT--ATTG--TGAAATGATT---AATTTTC-TCA-AAAAaaaaaatcaaagtaaaaaaaattggtactggtcaacaatggtataattggtaatacacagctattttgtgaaatcacatcgaataatgaaaacggtgtaagcatagttcacggaattatgggaaaaccctcgtat
gi|4 : A-AAA-TATTTT-CTAGAGGTTATGAGGA-CAATAC------GACAGGAAAGACAGGCCGGTCAAAGAAAAT-CAAGCAAAAT--------CC-----GGTGAAAGTGCTGGATAG-----CACG-AT-------------------------------TG-GGGAGACAACCTTA----CGAGA--GCTTGACG-ATA-TT------ACGGGGATC-AG-------CAA-------ATCGTCTGATCACCGCATTC--TATCGGATAATTTAGGAGTGCGCAG--G------GTAT-C---TGCACCTTGG-ATA-C-CTCAATTCTT-TAAAAAT---GAAGAA---AAA--CAA----AGAG-----GG---GTT----TCATGTTA-TAAAGTTACTTGTGAAACGC-CG-CGCGG-AAATTTTGACGTCG-TAAGTTACA-CCGCCGAGCAAAAATCC-----TTG--TGAAATAATG---AATTTCC-TCA-AAAAaacccagccctgaatgatttacaaagttaaatattggtgctggtcaacaatggtatagttggtaatatatattagcaattttgtgaatttaaattgaatgatttcaaagttttaaaccaagtccacagaatgtttgaataaccctcatat
gi|5 : tcaTTA--TATA--CCCGGG------------TTATGATGAAATAT------GTAAACGAATTATGGCAT--CGTTTAACAGTATGGAAGTGCAAACGTCCAGCTGAATGGAGATGTTAGCGTCAAACGCGGCGCACCAAG-AAG--AT---AT--TTTACACGGAACTTGGAGTGACCCCTACTGAAAATCCTATGACGTG--AGATTTGACAGAATCG---------CACAGAAATGTTTATCATTCTGTGCTGTTTAAATGAC---ACATAAT-T-TTTT-CTGAAGGATATGGGGA-CAATACATGTAGGCCAGGAAA-ACAGGCCGATCGAGGAAAGT-C-GTGAAAAA--------CC-----GGTAAAAGTTCTGTAT-GA----CACT-AT-------------------------------TCAAG------AAGGCAAATTTTAGAATGCGTGAAGAA-A-TTAAGGGAA-------TAAG-------CAAATCTTCTAT-------TCATCGCATTT--TATCAGATGATTTAGGAATGCATAG--G------ATAT-G---TACATCTTGG-ATA-C-CTCGACT-TTAAGAccaaaaaaattacaaagtagaatgtttgggtactcatcaacaatggtataattggtaatatactgcagttttgtgaaattacatcgaataatttaaaattttaagcctagtgcatggaattttgggacaattatcttatt
gi|6 : AATGTAATAGATGTGAATTAAAATAATTGAAATCGAATTACAATCACAAAAAAAAAA-ACCATTG--TTCATTTC---------ATTTCTATA--CAGGAATTTTGTTTATAGATACTCATGTA--TATAT-CC-GGAAATTTTTTATCATTATGACATAATATTTAA--GTAAAT--ATT--GACATGTCATGCAACAGTTAAGAGGTGCAAATGTCCAGCAAAATGGTGACATCAGCATCAAATGCAGTGTACTTA--AAGTCACTGAAT--TTCGCATGGAACTTGGATTAACCCCAACAGAGATGCACAAGAATTTAAAAAAATGGCAAAATAG---------CAAAGAAACGTTTCCCGCCACCTGGTAT--AAATGGC---ACA-AAA-TATTTT-TGGAATGATAT---GA-CAGTAT------GCCAGGAAAG--AGGCCGGCCAAAGGAAAT-TAAGGAAAGA--------
gi|7 : AAATGTTT-TCGCACC-TGGTGT-CACCTTGCGCTACA-AATGTATTTCATTGAATGACGTGAGAAACAATAC------GCCAGGAGAGAGAGG-CGTCCGTAATAATTAAAACGAAAA----------C-----AGTAAAAATGCTGGAT-G------ACGTAT------------------G------------TC-GGA-----ACCGAA----CGAG---GC-TGAAG---------------------T-AG-------CAA-------AT-------TCACCGCAATCTGTGTCGGATGA-TTAAGA-TGC-TAG--G------ACACACTGGTGCAAGTTAGCGTA-C-C-TGAGTTTT-AAAAAAT---GAAGAA---AAACGCAAT---A--------GG---ATT----TCATGTTG-T-GACTTA-ATGT-AAACACACG-CGAGAGAAATA-TGACGTCATCAAGTCGAG-CCGCTGA-CACAAT-TCTT--ATTG--T-AAATAATT---AATTTTG-TCA-CAAAGTTAAa
gi|8 : caTCGGATAATTACAGAGTGCATAGCCG------GT-C-C---TGAAAGTTGG-ATA-A-T-CGACTCTTAAACAAGCTGAGAAGAATAAAAA--CAAGATGA--------CG---ATTATTTCCATGTTTCTAAAATCACATGTAAAACGC-CGCCCAAA-AAATG-TGACGTCT-CAAGTTGCGCCCGCCGACCACAT--CCTTTGTTTGCTTAAAATAATTAACAATTTTC-T-A-GAAAa
gi|9 : TAAGAGTGCATAG--G------GTTC-C---TGAAAGTTGG-ATA-CAT-CGACTCTTAAACAAGT---GAAGAA---AAA--CAA----A--------GAGATATT----TCATGTTT-TAAAATCACATGTAAAACGC-CG-CAA-A-AAATGTTGACGTCT-CAAGTTGCG-CCGCCGACCACAT--CCTT--GTTG--TAAAATAATT---AATTTTC-T-A-GAAAaaaattaataatttacaaagttgaacgtttagcggttctcctcaagaaagatataattgcttaaatacagcgcccgttattgtgaaacacattacattgaagaattcaaaagtatttagatttaatccacggaattttttgcgacaacttctctttaggattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACCTTTTCATTAATTTTTTTTTTCAAACAAAAGGGGGAAAATAAATTAACATTGTGCAAAGTTGAAATTTGGGTACCTGTTAAGAATGATATAATTGGTAAAATGCAGCAATTTTATGCAATTACATCACATGATTTTAAAAGTTTTAAGTACAGTCTGATTAATTTGGGAACAACCCTCGTA
Unaligned ( gi|14 ): TAACAATAATATTATTGGTAACATTCTGTACATGTATAGCAGTTTTGTGAAATTATATTGAATAGTTTAAAAGTCTAGAGAATGGTGGGACAATCCTCGTATC
Unaligned ( gi|15 ): ATCGTATAATTGGTATATATGGCAGTTTTGTAAAATTAAAATCGATAGTTTAAAAGTTTTAAGCTGAGGTCCGCGAGAGATTTGGGGACAGCGCATTA
Unaligned ( gi|16 ): AAAATAATTTAAAATGTACTAAGATGAAATTTGGGTACTCGTCAACAATGACATCATCGGTAAGA