lowQualScore : 1 22222 1111111111 222222222222222222222 1 33333
lowQualScore : 1 3 2 22 1 44444 2 2 2 5 4 2 222 2 6 2 2 1 333 2 444 0000000000 999999999999999999999 333 6 22 2 333 55555 22 33 4 22 2 333 33 2 77 4 2 2 22222
lowQualScore : . . . .. . ..... . . . . . . ... . . . . . ... . ... .......... ..................... ... . .. . ... ..... .. .. . .. . ... .. . .. . . . .....
lowQualScore : 4 1 7 99 0 22222 7 1 1 6 2 1 777 2 6 2 4 0 999 2 111 3333333333 888888888888888888888 999 4 99 1 555 00000 88 11 2 99 1 999 11 2 44 7 4 9 22222
consensus : TTATTATA-CCTCA-TATAAAGA--ATCACTAGTAAAACAG--AATCTGATTGGCCGAGAAG-GT-CACGTGACCGT-CGTGT-T-T-ACCCTGCAA-CAAA-ACG-TCGT---GTT-C---C----------ACCCCTTCGGATA--TCTCTTG------TTTCA---CTTTCGTTTCCA--GT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTA-TTCA---TTTTGATTTTAT
Reference ( gi|4 ) : TTATCATA-CCTCA-TATAAAGA--ATCGCTAGTAAAACAT--ATTCTGATTGGCCGAGAAG-GT-CATGTGACCGT-CGTGT-T-T-ACCCTGCAA-CGAA-ACG-TCGT---GTT-C---C----------ACCCCTTGGAATA--TCTTTTA------TTTCA---CTTTCGTTTGCA--GT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-CGGCAAGGT-T-TTA-TT-A---TTTTGATTTTAT
gi|2 : TTATTATA-CATAA-TATGAAGA--ATTACTAGTAAAACAG--AATCTCACTGACCGACAAC-GT-TATGTAACCGT-CGTGT-T-T-ACCTTGTAA-CAAA-ACG-TCGT---GTT-C---C----------ACCCCTTTGAATATTTCTTTT-------TTTCA---CTTCCGTTTCCA--AT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCT-AGTAA--C-ACAGACA---AC--AAC-AAACA-TGAC-AGGT-T-TTATTT-G---TTTTGATTTTAT
gi|7 : TTATCATA-CCTCA-TATAAAGA--ATC-------------------TGATTGGCTGAGAAG-GG-CATGTGACTGT-TGTGT-T-TTACCCTGCAA-CAAA-ATG-TTGTCATGTT-C---C----------ATCCCTTCGGATA--T-TCTTG------TTTCA---CTTTCGTTTCCA--GT-TAAATGA---ACA-----AA--CC--TGAATGTTTTG-AATGA--C-GCAGATG---AT--AAC-AAACA-TATAAATGG-T-TTA-TT-CTT-TTTTGAATTTATg
gi|1 : TTATTATA-CCTCA-CATAAAAG--AACACTAGTAAAACAGGAATCTTGATTGG-CGAGAGGCGT-CACGTGACTAT-CATGTAT-T-ACCTTGCAA-CAAA-ACGTTCTT---G-T-C---C----------ACTCTTCGG-ATA--TC--TCG------TTTCA---CTGTTGTTT-CA--GTAAAAATCA---ACA-----AAACTC--CGAGTGTTCCA-AATAA--C-GCAGGCGTTTGA--AAC-AAACATTGGCAAGGC-CATTA-TTCAATTTTTTGATTTTATg
gi|10 : aTTATTATA-ATTCA-TATTAATA--AATTTTGGTAAAACAT--AATCTGACTGGCTTAGAAG-GT-CA----------CGTGC-T-T-ACCCTTCAA--GAATACG-TTGT---GTT-T---CGGACTGGTTCACATCTTCGAATT--TCCCTTG------TTTCA---CTTTCGTTTTCC--GT-TCAATGA---ACA-----AA--CC--AGAGTGATCTG-AATGA--C-GCAGACG---AC--AAC-AAAAA-TAGCAAAGT-T-T
gi|3 : aTTATTATAACCTCACTATAAGAA--ATCACTAGTAAA-CACG-AATCTGAT-GGCTGAGAAG-GTTCACGTG--CGTTCATGT-T-T-AACCTGCAAACAAA-ACA-TCAT---GTTTC---C----------ACCCTTCGGA-TA--TAAATTG------TTTCA---TTATCGTTT-CAAAGT-TAAATGA----CA-----AA--CC--TGATTGTTCCGAAATGA--CGGCAG-----------AC-AAACA-TGG-AAGGT-T-TGA-TT-C---ATTTGATTTTA
gi|13 : TCATTATA-CCTCA-TAGAAAGA--AGCAATAGTAAAATAG--AATCTGATTGGCTGAG----GC-CACGTGACC------------------------------G-TTGT---GTC-C---C----------ACCCCTTTGGATA--TCTC--A------TTTCA---CTT-------------------GA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--C-GCAGATG---AC--AACAAAACA-TTGCAAGATGT-TTA-TTCA---GTTTGATTTTATaatg
gi|25 : TATCATA-CCTCA-TATAAAGC--ATATTTAGGAAAGCAG--AATTTGATTGGCCAAgc
gi|5 : ATA-CCCCA-TCTACAGA--ATGACTAGTAAAACAG--AATCTGATTGGCCGAG----GT-CATGTGACCGTACG-GT-T-T-ACCCTACAA-CAAA-ACG-TCGT---GTT-C---C----------ACCCCTTCGGATA--TCTCTTG------CTTCA---CTTTCGTTTCCA--GT-TAAATGA---ACA-----AA--TC--CGAGTGTTCCG-AATGA--C-GCGGACG---AC--AAC-AAATA-TGGCAAGGT-T-TTA-TTCA---TTTTGATTTTAT
gi|6 : taATA-CCTCA-TATAAAGA--ATCACTAGTAAAAAAG--AATCTGATTGGCCGAG----GT-CACGTGACCAT-CATGT-T-T-ACCCTGCAA-CAAA-ACA-TCGT---GTT-C---C----------ACTCCTTCGGATA--TCTCTAG------TTTCA---CTTTCGTTTTCA--GT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGATG---TC--AAC-AAACA-TGGCACGGT-T-TTA-TT-CT--TTTTAATTTTATg
gi|11 : tATA-CCTCT-TGTAAAGA--ATCACTAGTAAAAGAG--AATCTGATTAGCCAAGAAG-GT-CACGTGACCAT-CGTAT-T-T-ATCCTACAC-CAAA-ACG-TC-------------------------------------------TTG------TTTCA---CTTTTGTTTCCA--TT-GAAATGA---ACA-----AA--CC--TGTGTGTTCCA-AATGA--T-GCATACA---AT--AAC-AAACA-CGCCAAGGT-T-TTA-TTCA---CTTTGATTTTATg
gi|8 : tA-CCTCA-TATAAAGA--ATCACTAGTAAAACAG--AATCTGATTGGCTGAGAAG-GT-CACGTGACCGT-CATGT-T-T-ACCCTGCAA-CAAA-ACA-TCAT---GTT-C---C----------ACCCCTTCGGATA--TAAATTG------TTTCA---CTTTCGTTTCAA--GT-TAAATGA---ACA-----AA--CC--TGATTGTTCCG-AATGA--C-GCAG-----------AC-AAACA-TGGCAAGGT-T-TGA-TTCA---TTTCGATTTTATa
gi|15 : A-TCTCA-TATAAAGA--ATCACTAGTAAAACAG--AATCTGATTGGCCGAAAAG-GT-CACG------------------------CAA-C-----TG-TCCT---GTT-T---C----------ATCCCTTCGGATA--TCT----------------------CGTTTCCA--GT-TAAATGA---ACA-----AA--TC--TGAGTGGACTG-AACGA--C-GCAGATG---AC--AAC-AAACA-TGACAAGGT-T-Tg
gi|16 : tgc-CCTCA-TATAAAGA--ATCACGAGTAAAACAA--AATCTGATTGGCAGATAAG-GT----------GG-CGTGT-TCC-ACCCT
gi|9 : gCTCA-TATAAAGA--ATCACTAGTGAAGTAG--AGTCTGGTTGACCGAGAAG-GT-CACGTGCCCGT-CGTGT-T-T-ACCCTGCAA-CAAA-ACG-TCGT---GTT-C---C----------TTCCCTTCGGATA--TC--TCA------TTTCG---CTTTCGTTTCCA--GT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACA---AC--AAG-AAGTA-TGGCAAGGT-T-TTG-TTCA---TATTGATTTTttgggatttgtttccagttaaatgaacaaaccctcgagagctccaaatgatgcagataacaacaaac
gi|22 : TCA-TTTAAATATAATC---AGTGAACCGC--AATCTGATTGATGAAGAAG-GT-CATGTGACTGT-CATGT-T-C-ACCTTGGAA-CAAA-----TCAT---GTT-
gi|20 : TAAAGA--ATCACCAGTAAAACAG--AATCTGATTGGCCGAGAAG-GT-CACGTGACCGC-CATGT-T-T-GCTCTGCAA-CAAA-AC
gi|17 : gttAAAA--ATCCCTAGTAAAACAG--AATCTGACAGGCCGTTAAG-GT-CACGTGACTGT-CGTAT-T--------------GAA-ACG-CC------TT-CGGAT----------ATCCCTCGGA------TTCGTACGAGAGTTTCGGCTCTTTCGTTTGCA--G-----ACGAGTTACA-----AA--Cccttcatcgctgaaaatattt
gi|14 : tcAGA--ATCACTAGTAAAACAT--AATCTGATTGGCCGAG----GT-CACGTGACCGT-CGTGT-T-T-ACATTGCAA-CAAA-ACG-TCGT---GTT-C---------------------------------TTG------TCTCA---CTTTCGTTTCCA--GT-GAAACGA---ACA-----AA--CC--CGAGTGTTCCACAATGACCC-GCAGACG---ACAAAAC-AAATA-TAGCAAGGT-T-T
gi|21 : A--ATCATCAGTAAAAGAG--AATCTGATTGGTCGACTAG-GT-CAGATGACTGT-CGTCT-T-T-GTCCTGCAA-CAAA-TCA-TAGT---ATT-C---C----------
gi|12 : gatTAGTAAAACAG--AATCTGATTGGCCAGGAAG-GT-CACATGACCGT-TGTGT-T-C-TCCCTGTAA-CAAA-ATG-TCGT---GTT-C---C----------ACCCCTTTGGATA--TTTCTTG------TTTCA---CTTTTGTTTCCA--GT-TAAATGA---ATA-----AA--CC--CGAGCGTTCCG-AATGA--C-GCAAACG---AC--AAC-AAACA-TGGCCAGG--T-TTA-TT-tctct
gi|16 : ttataccttaCGT---GTT-C---C----------ACCCTTTGGGA-------TTTG------TTTC--------------CA--GT-TAAATGA---ACA-----AA--CCCTCGAGAGCTCCA-AATGA--T-GCAGATA---AC--AAC-AAACt
gi|18 : gcctcatataaagaatcacgagtaaaacaaaatctgattggcagataaggtggTTG------TTTCA---CTT--GTATCCA--GT-GAAATGA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--T-GCAGA
gi|26 : tgttcgatccctgtcagctagc------TCTCG---CTTTCGTTTCCA--GT-TAAATGA---ACA-----AA--Cacttgaccatgtttattcactttaattatatgc
gi|23 : gCA--GT-TAAATGA---ACA-----AA--CC--TGCGTGTTCCG-AATGA--C-GCACACA---AC--AAA-AAACA-TGGCAAGGT-T-TTA-TT-C---TTTT
gi|19 : tcAAATGA---ATACAAAAAA--CC--CATGTGCTCCG-AATGA--C-GCAGATG---AC--AAC-AAACA-TGGCAAGGCAT-TTA-TC-A----TTTGATTTtga
gi|24 : ttgggtacagattatcttcatctaaatcagTCTG-AATGA--C-GCAGACG---AC--AAC-AAACA-TG--------T-TTA-TTCA---TTTTGATTTTATatgc
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 333 2 9999999999 3 2 88888888888888888888 333 2 2 333 44444 22 22 4 22 2 333 22 2 2 44 2 2 5555
lowQualScore : . . . . . . . . . . . . . . . ... . .......... . . .................... ... . . ... ..... .. .. . .. . ... .. . . .. . . ....
lowQualScore : 9 5 1 8 9 1 0 0 1 1 1 1 0 0 1 555 0 2222222222 3 2 00000000000000000000 777 0 0 333 88888 66 99 0 88 0 555 88 0 1 55 1 7 8888
consensus : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
Reference ( family-18 ) : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|1 : TTATTATA-CCTCA-CATAAA-AGAACACTAGTAAAACAGGAATCTTGATTGG-CGAGAGGCG-TCACGTGACTA-T-CATGTATT-ACCTTGC-A-ACAAAACGTTCTT---G--TCC----------A-CTCT-TCGGATATCTC-----------------GTTTCA---CTGTTGTTT--CAGTAAAAATCA---ACA-----AAACTC--CGAGTGTTCCA-AATAA--C-GCAGGCGTTTGA--AAC-AAACATTGGCAAGGC-CATTATTC-AATTTTTTGATTTTAT
gi|10 : aTTATTATA-ATTCA-TATTAATAAATT-TTGGTAAAACA-TAATC-TGACTGGCTTAGAAG-G-TCACGTG-----------C-TT-ACCCTTC-A-AGAATACG-TTGT---G-TTTCGGACTGGTTCACATCT-TCGAATTTCCC-TT--------------GTTTCA---CTTTCGTTTT-CCGT-TCAATGA---ACA-----AA--CC--AGAGTGATCTG-AATGA--C-GCAGACG---AC--AAC-AAAAA-TAGCAAAGT-T-T
gi|11 : aTATA-CCTCT-TGTAAA-GAATCACTAGTAAAAGA-GAATC-TGATTAGCCAAGAAG-G-TCACGTGACCA-T-CGTAT-TT-ATCCTAC-A-CCAAAACG----------------------------------------TC-TT--------------GTTTCA---CTTTTGTTTC-CATT-GAAATGA---ACA-----AA--CC--TGTGTGTTCCA-AATGA--T-GCATACA---AT--AAC-AAACA-CGCCAAGGT-T-TTATTC-A---CTTTGATTTTAT
gi|12 : TAGTAAAACA-GAATC-TGATTGGCCAGGAAG-G-TCACATGACCG-T-TGTGT-TC-TCCCTGT-A-ACAAAATG-TCGT---G-TTCC----------ACCCCT-TTGGATATTTC-TT--------------GTTTCA---CTTTTGTTTC-CAGT-TAAATGA---ATA-----AA--CC--CGAGCGTTCCG-AATGA--C-GCAAACG---AC--AAC-AAACA-TGGCCAGG--T-TTATTa
gi|13 : ttataccttaTCATTATA-CCTCA-TAGAAA-GAAGCAATAGTAAAATA-GAATC-TGATTGGCTGAG----G-CCACGTGACCG-T-TGTGT-C--------------------------------CC----------ACCCCT-TTGGATATCTC-----------------ATTTCA---CTT------------------GA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--C-GCAGATG---AC--AACAAAACA-TTGCAAGATGT-TTATTC-A---GTTTGATTTTATt
gi|14 : A-GAATCACTAGTAAAACA-TAATC-TGATTGGCCGAG----G-TCACGTGACCG-T-CGTGT-TT-ACATTGC-A-ACAAAACG-TCGT---G-T-----------------------------TC-TT--------------GTCTCA---CTTTCGTTTC-CAGT-GAAACGA---ACA-----AA--CC--CGAGTGTTCCACAATGACCC-GCAGACG---ACAAAAC-AAATA-TAGCAAGGT-T-Tgc
gi|15 : A-TCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAAAAG-G-TCACGCAACTG-T-CCTGT-TT--------------------------------C----------ATCCCT-TCGGATATC-------------------------------TCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--TGAGTGGACTG-AACGA--C-GCAGATG---AC--AAC-AAACA-TGACAAGGT-T-T
gi|16 : tgc-CCTCA-TATAAA-GAATCACGAGTAAAACA-AAATC-TGATTGGCAGATAAG-G-TGGCGTG
gi|16 : gGC-AGATAAGGTG-GCGT---G-TTCC----------ACCCTT-TGGGA----------------------------------TTTGTTTC-CAGT-TAAATGA---ACA-----AA--CCCTCGAGAGCTCCA-AATGA--T-GCAGATA---AC--AAC-AAACttccaccctttgggatttgtttccagttaaatgaacaaaccctcgagagctccaaatgatgcagataacaacaaac
gi|17 : gcctcatataaagaatcacgagtaaaacaaaatctgattgAA-AAATCCCTAGTAAAACA-GAATC-TGACAGGCCGTTAAG-G-TCACGTGACTG-T-CGTAT-T--------------GAAACG---------------------------CCT-TCGGATATCCC-TCGGATTCGTACGAGAGTTTCGGCTCTTTCGTTTG-CAG-----ACGAGTTACA-----AA--C
gi|18 : tcT---G-TTCG----------ATCCCTGTCAGCTAGCT---T--------------GTTTCA---CTT--GTATC-CAGT-GAAATGA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--T-GCAG---------------AACT-TGACCATG--T-TTATTC-A---CTTTAATTATAT
gi|19 : AAATGA---ATACAAAAAA--CC--CATGTGCTCCG-AATGA--C-GCAGATG---AC--AAC-AAACA-TGGCAAGGCAT-TTA-TC-A----TTTGATTTgc
gi|2 : ttgggtacagattatcttcatctaaatcagTTATTATA-CATAA-TATGAA-GAATTACTAGTAAAACA-GAATC-TCACTGACCGACAAC-G-TTATGTAACCG-T-CGTGT-TT-ACCTTGT-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TTGAATATTTCTTT--------------TTTTCA---CTTCCGTTTC-CAAT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCT-AGTAA--C-ACAGACA---AC--AAC-AAACA-TGAC-AGGT-T-TTATTT-G---TTTTGATTTTATatgc
gi|20 : TAAA-GAATCACCAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-C-CATGT-TT-GCTCTGC-A-ACAAAACg
gi|21 : gttAATCATCAGTAAAAGA-GAATC-TGATTGGTCGACTAG-G-TCAGATGACTG-T-CGTCT-TT-GTCCTGC-A-ACAAATCA-TAGT---A-TTCC----------ccttcatcgctgaaaatattt
gi|22 : gatTCA-TTTAAA-TA-TAATCAGTGAACCG-CAATC-TGATTGATGAAGAAG-G-TCATGTGACTG-T-CATGT-TC-ACCTTGG-A-ACAAA----TCAT---G-TTtctct
gi|23 : TC-CAGT-TAAATGA---ACA-----AA--CC--TGCGTGTTCCG-AATGA--C-GCACACA---AC--AAA-AAACA-TGGCAAGGT-T-TTATTC-T---TTTTGA
gi|24 : TCTG-AATGA--C-GCAGACG---AC--AAC-AAACA-TG--------T-TTATTC-A---TTTTGATTTTAT
gi|25 : caaTATCATA-CCTCA-TATAAA-GCATATTTAGGAAAGCA-GAATT-TGATTGGCCAAgc
gi|26 : --------------GTCTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--C
gi|3 : TTATTATAACCTCACTATAAG-AAATCACTAGT-AAACACGAATC-TGA-TGGCTGAGAAG-GTTCACGTG--CGTT-CATGT-TT-AACCTGCAA-ACAAAACA-TCAT---GTTTCC----------A-CCCT-TCGGATATAAA-TT--------------GTTTCA---TTATCGTTTCAAAGT-TAAATG----ACA-----AA--CC--TGATTGTTCCGAAATGA--CGGCAG-----------AC-AAACA-TGG-AAGGT-T-TGATTC-A----TTTGATTTTA
gi|4 : TTATCATA-CCTCA-TATAAA-GAATCGCTAGTAAAACA-TATTC-TGATTGGCCGAGAAG-G-TCATGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACGAAACG-TCGT---G-TTCC----------ACCCCT-TGGAATATCTT-TT--------------ATTTCA---CTTTCGTTTG-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-CGGCAAGGT-T-TTATT--A---TTTTGATTTTATaatg
gi|5 : ATA-CCCCA-TCTACA-GAATGACTAGTAAAACA-GAATC-TGATTGGCCGAG----G-TCATGTGACCG-TACG-GT-TT-ACCCTAC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GCTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--CGAGTGTTCCG-AATGA--C-GCGGACG---AC--AAC-AAATA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|6 : taTATA-CCTCA-TATAAA-GAATCACTAGTAAAAAA-GAATC-TGATTGGCCGAG----G-TCACGTGACCA-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCGT---G-TTCC----------ACTCCT-TCGGATATCTC-TA--------------GTTTCA---CTTTCGTTTT-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGATG---TC--AAC-AAACA-TGGCACGGT-T-TTATTC-T---TTTTAATTTTATg
gi|7 : TTATCATA-CCTCA-TATAAA-GAATC-------------------TGATTGGCTGAGAAG-G-GCATGTGACTG-T-TGTGT-TTTACCCTGC-A-ACAAAATG-TTGTCATG-TTCC----------ATCCCT-TCGGATAT-TC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--TGAATGTTTTG-AATGA--C-GCAGATG---AT--AAC-AAACA-TATAAATGG-T-TTATTCTT---TTTTGAATTTATg
gi|8 : A-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCTGAGAAG-G-TCACGTGACCG-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCAT---G-TTCC----------ACCCCT-TCGGATATAAA-TT--------------GTTTCA---CTTTCGTTTC-AAGT-TAAATGA---ACA-----AA--CC--TGATTGTTCCG-AATGA--C-GCAG-----------AC-AAACA-TGGCAAGGT-T-TGATTC-A---TTTCGATTTTATg
gi|9 : CTCA-TATAAA-GAATCACTAGTGAAGTA-GAGTC-TGGTTGACCGAGAAG-G-TCACGTGCCCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------TTCCCT-TCGGATATCTC-----------------ATTTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACA---AC--AAG-AAGTA-TGGCAAGGT-T-TTGTTC-A---TATTGATTTTg
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 333 2 9999999999 3 2 88888888888888888888 333 2 2 333 44444 22 22 4 22 2 333 22 2 2 44 2 2 5555
lowQualScore : . . . . . . . . . . . . . . . ... . .......... . . .................... ... . . ... ..... .. .. . .. . ... .. . . .. . . ....
lowQualScore : 9 5 1 8 9 1 0 0 1 1 1 1 0 0 1 555 0 2222222222 3 2 00000000000000000000 777 0 0 333 88888 66 99 0 88 0 555 88 0 1 55 1 7 8888
consensus : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
Reference ( family-18 ) : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|1 : TTATTATA-CCTCA-CATAAA-AGAACACTAGTAAAACAGGAATCTTGATTGG-CGAGAGGCG-TCACGTGACTA-T-CATGTATT-ACCTTGC-A-ACAAAACGTTCTT---G--TCC----------A-CTCT-TCGGATATCTC-----------------GTTTCA---CTGTTGTTT--CAGTAAAAATCA---ACA-----AAACTC--CGAGTGTTCCA-AATAA--C-GCAGGCGTTTGA--AAC-AAACATTGGCAAGGC-CATTATTC-AATTTTTTGATTTTAT
gi|10 : aTTATTATA-ATTCA-TATTAATAAATT-TTGGTAAAACA-TAATC-TGACTGGCTTAGAAG-G-TCACGTG-----------C-TT-ACCCTTC-A-AGAATACG-TTGT---G-TTTCGGACTGGTTCACATCT-TCGAATTTCCC-TT--------------GTTTCA---CTTTCGTTTT-CCGT-TCAATGA---ACA-----AA--CC--AGAGTGATCTG-AATGA--C-GCAGACG---AC--AAC-AAAAA-TAGCAAAGT-T-T
gi|11 : aTATA-CCTCT-TGTAAA-GAATCACTAGTAAAAGA-GAATC-TGATTAGCCAAGAAG-G-TCACGTGACCA-T-CGTAT-TT-ATCCTAC-A-CCAAAACG----------------------------------------TC-TT--------------GTTTCA---CTTTTGTTTC-CATT-GAAATGA---ACA-----AA--CC--TGTGTGTTCCA-AATGA--T-GCATACA---AT--AAC-AAACA-CGCCAAGGT-T-TTATTC-A---CTTTGATTTTAT
gi|12 : TAGTAAAACA-GAATC-TGATTGGCCAGGAAG-G-TCACATGACCG-T-TGTGT-TC-TCCCTGT-A-ACAAAATG-TCGT---G-TTCC----------ACCCCT-TTGGATATTTC-TT--------------GTTTCA---CTTTTGTTTC-CAGT-TAAATGA---ATA-----AA--CC--CGAGCGTTCCG-AATGA--C-GCAAACG---AC--AAC-AAACA-TGGCCAGG--T-TTATTa
gi|13 : ttataccttaTCATTATA-CCTCA-TAGAAA-GAAGCAATAGTAAAATA-GAATC-TGATTGGCTGAG----G-CCACGTGACCG-T-TGTGT-C--------------------------------CC----------ACCCCT-TTGGATATCTC-----------------ATTTCA---CTT------------------GA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--C-GCAGATG---AC--AACAAAACA-TTGCAAGATGT-TTATTC-A---GTTTGATTTTATt
gi|14 : A-GAATCACTAGTAAAACA-TAATC-TGATTGGCCGAG----G-TCACGTGACCG-T-CGTGT-TT-ACATTGC-A-ACAAAACG-TCGT---G-T-----------------------------TC-TT--------------GTCTCA---CTTTCGTTTC-CAGT-GAAACGA---ACA-----AA--CC--CGAGTGTTCCACAATGACCC-GCAGACG---ACAAAAC-AAATA-TAGCAAGGT-T-Tgc
gi|15 : A-TCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAAAAG-G-TCACGCAACTG-T-CCTGT-TT--------------------------------C----------ATCCCT-TCGGATATC-------------------------------TCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--TGAGTGGACTG-AACGA--C-GCAGATG---AC--AAC-AAACA-TGACAAGGT-T-T
gi|16 : tgc-CCTCA-TATAAA-GAATCACGAGTAAAACA-AAATC-TGATTGGCAGATAAG-G-TGGCGTG
gi|16 : gGC-AGATAAGGTG-GCGT---G-TTCC----------ACCCTT-TGGGA----------------------------------TTTGTTTC-CAGT-TAAATGA---ACA-----AA--CCCTCGAGAGCTCCA-AATGA--T-GCAGATA---AC--AAC-AAACttccaccctttgggatttgtttccagttaaatgaacaaaccctcgagagctccaaatgatgcagataacaacaaac
gi|17 : gcctcatataaagaatcacgagtaaaacaaaatctgattgAA-AAATCCCTAGTAAAACA-GAATC-TGACAGGCCGTTAAG-G-TCACGTGACTG-T-CGTAT-T--------------GAAACG---------------------------CCT-TCGGATATCCC-TCGGATTCGTACGAGAGTTTCGGCTCTTTCGTTTG-CAG-----ACGAGTTACA-----AA--C
gi|18 : tcT---G-TTCG----------ATCCCTGTCAGCTAGCT---T--------------GTTTCA---CTT--GTATC-CAGT-GAAATGA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--T-GCAG---------------AACT-TGACCATG--T-TTATTC-A---CTTTAATTATAT
gi|19 : AAATGA---ATACAAAAAA--CC--CATGTGCTCCG-AATGA--C-GCAGATG---AC--AAC-AAACA-TGGCAAGGCAT-TTA-TC-A----TTTGATTTgc
gi|2 : ttgggtacagattatcttcatctaaatcagTTATTATA-CATAA-TATGAA-GAATTACTAGTAAAACA-GAATC-TCACTGACCGACAAC-G-TTATGTAACCG-T-CGTGT-TT-ACCTTGT-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TTGAATATTTCTTT--------------TTTTCA---CTTCCGTTTC-CAAT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCT-AGTAA--C-ACAGACA---AC--AAC-AAACA-TGAC-AGGT-T-TTATTT-G---TTTTGATTTTATatgc
gi|20 : TAAA-GAATCACCAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-C-CATGT-TT-GCTCTGC-A-ACAAAACg
gi|21 : gttAATCATCAGTAAAAGA-GAATC-TGATTGGTCGACTAG-G-TCAGATGACTG-T-CGTCT-TT-GTCCTGC-A-ACAAATCA-TAGT---A-TTCC----------ccttcatcgctgaaaatattt
gi|22 : gatTCA-TTTAAA-TA-TAATCAGTGAACCG-CAATC-TGATTGATGAAGAAG-G-TCATGTGACTG-T-CATGT-TC-ACCTTGG-A-ACAAA----TCAT---G-TTtctct
gi|23 : TC-CAGT-TAAATGA---ACA-----AA--CC--TGCGTGTTCCG-AATGA--C-GCACACA---AC--AAA-AAACA-TGGCAAGGT-T-TTATTC-T---TTTTGA
gi|24 : TCTG-AATGA--C-GCAGACG---AC--AAC-AAACA-TG--------T-TTATTC-A---TTTTGATTTTAT
gi|25 : caaTATCATA-CCTCA-TATAAA-GCATATTTAGGAAAGCA-GAATT-TGATTGGCCAAgc
gi|26 : --------------GTCTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--C
gi|3 : TTATTATAACCTCACTATAAG-AAATCACTAGT-AAACACGAATC-TGA-TGGCTGAGAAG-GTTCACGTG--CGTT-CATGT-TT-AACCTGCAA-ACAAAACA-TCAT---GTTTCC----------A-CCCT-TCGGATATAAA-TT--------------GTTTCA---TTATCGTTTCAAAGT-TAAATG----ACA-----AA--CC--TGATTGTTCCGAAATGA--CGGCAG-----------AC-AAACA-TGG-AAGGT-T-TGATTC-A----TTTGATTTTA
gi|4 : TTATCATA-CCTCA-TATAAA-GAATCGCTAGTAAAACA-TATTC-TGATTGGCCGAGAAG-G-TCATGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACGAAACG-TCGT---G-TTCC----------ACCCCT-TGGAATATCTT-TT--------------ATTTCA---CTTTCGTTTG-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-CGGCAAGGT-T-TTATT--A---TTTTGATTTTATaatg
gi|5 : ATA-CCCCA-TCTACA-GAATGACTAGTAAAACA-GAATC-TGATTGGCCGAG----G-TCATGTGACCG-TACG-GT-TT-ACCCTAC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GCTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--CGAGTGTTCCG-AATGA--C-GCGGACG---AC--AAC-AAATA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|6 : taTATA-CCTCA-TATAAA-GAATCACTAGTAAAAAA-GAATC-TGATTGGCCGAG----G-TCACGTGACCA-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCGT---G-TTCC----------ACTCCT-TCGGATATCTC-TA--------------GTTTCA---CTTTCGTTTT-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGATG---TC--AAC-AAACA-TGGCACGGT-T-TTATTC-T---TTTTAATTTTATg
gi|7 : TTATCATA-CCTCA-TATAAA-GAATC-------------------TGATTGGCTGAGAAG-G-GCATGTGACTG-T-TGTGT-TTTACCCTGC-A-ACAAAATG-TTGTCATG-TTCC----------ATCCCT-TCGGATAT-TC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--TGAATGTTTTG-AATGA--C-GCAGATG---AT--AAC-AAACA-TATAAATGG-T-TTATTCTT---TTTTGAATTTATg
gi|8 : A-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCTGAGAAG-G-TCACGTGACCG-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCAT---G-TTCC----------ACCCCT-TCGGATATAAA-TT--------------GTTTCA---CTTTCGTTTC-AAGT-TAAATGA---ACA-----AA--CC--TGATTGTTCCG-AATGA--C-GCAG-----------AC-AAACA-TGGCAAGGT-T-TGATTC-A---TTTCGATTTTATg
gi|9 : CTCA-TATAAA-GAATCACTAGTGAAGTA-GAGTC-TGGTTGACCGAGAAG-G-TCACGTGCCCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------TTCCCT-TCGGATATCTC-----------------ATTTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACA---AC--AAG-AAGTA-TGGCAAGGT-T-TTGTTC-A---TATTGATTTTg
blockSeqs : A C T C . A . T T A . T A G . CAT T GGACTGGTTC C G CCCTCGGATTCGTACGAGA GCT A . GTT CAAAA . CT C CC G . AA A . TG . T C
blockSeqs : . . . . . A . . . . . . . . . . . . C . TTCTTT . . . . . . . A . . . . . . CA . . G
blockSeqs : . . . . . A . . . . . . . . . . . . C . CCCTT . . . . . . . . . . . . . . T . . C
blockSeqs : . . . . . A . . . . . . . . . . . . T . TTCTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . C . AAATT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . T . CTTTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . C . CTCTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . C . CTCTA . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . T . . . . . . . . . . . . C . AAATT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . C . TCTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . T . TCTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . C . TCTT . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . A . . . . . . . . . . . . T . CTC . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . CTT . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . CTC . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CTCTT*************** ** *** T***
originalCons : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
finalCons : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTCTT---------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-AT---TTTGATTTTAT
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 333 2 9999999999 3 2 88888888888888888888 333 2 2 333 44444 22 22 4 22 2 333 22 2 2 44 2 2 5555
lowQualScore : . . . . . . . . . . . . . . . ... . .......... . . .................... ... . . ... ..... .. .. . .. . ... .. . . .. . . ....
lowQualScore : 9 5 1 8 9 1 0 0 1 1 1 1 0 0 1 555 0 2222222222 3 2 00000000000000000000 777 0 0 333 88888 66 99 0 88 0 555 88 0 1 55 1 7 8888
consensus : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
Reference ( family-18 ) : TTATTATA-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|1 : TTATTATA-CCTCA-CATAAA-AGAACACTAGTAAAACAGGAATCTTGATTGG-CGAGAGGCG-TCACGTGACTA-T-CATGTATT-ACCTTGC-A-ACAAAACGTTCTT---G--TCC----------A-CTCT-TCGGATATCTC-----------------GTTTCA---CTGTTGTTT--CAGTAAAAATCA---ACA-----AAACTC--CGAGTGTTCCA-AATAA--C-GCAGGCGTTTGA--AAC-AAACATTGGCAAGGC-CATTATTC-AATTTTTTGATTTTAT
gi|10 : aTTATTATA-ATTCA-TATTAATAAATT-TTGGTAAAACA-TAATC-TGACTGGCTTAGAAG-G-TCACGTG-----------C-TT-ACCCTTC-A-AGAATACG-TTGT---G-TTTCGGACTGGTTCACATCT-TCGAATTTCCC-TT--------------GTTTCA---CTTTCGTTTT-CCGT-TCAATGA---ACA-----AA--CC--AGAGTGATCTG-AATGA--C-GCAGACG---AC--AAC-AAAAA-TAGCAAAGT-T-T
gi|11 : aTATA-CCTCT-TGTAAA-GAATCACTAGTAAAAGA-GAATC-TGATTAGCCAAGAAG-G-TCACGTGACCA-T-CGTAT-TT-ATCCTAC-A-CCAAAACG----------------------------------------TC-TT--------------GTTTCA---CTTTTGTTTC-CATT-GAAATGA---ACA-----AA--CC--TGTGTGTTCCA-AATGA--T-GCATACA---AT--AAC-AAACA-CGCCAAGGT-T-TTATTC-A---CTTTGATTTTAT
gi|12 : TAGTAAAACA-GAATC-TGATTGGCCAGGAAG-G-TCACATGACCG-T-TGTGT-TC-TCCCTGT-A-ACAAAATG-TCGT---G-TTCC----------ACCCCT-TTGGATATTTC-TT--------------GTTTCA---CTTTTGTTTC-CAGT-TAAATGA---ATA-----AA--CC--CGAGCGTTCCG-AATGA--C-GCAAACG---AC--AAC-AAACA-TGGCCAGG--T-TTATTa
gi|13 : ttataccttaTCATTATA-CCTCA-TAGAAA-GAAGCAATAGTAAAATA-GAATC-TGATTGGCTGAG----G-CCACGTGACCG-T-TGTGT-C--------------------------------CC----------ACCCCT-TTGGATATCTC-----------------ATTTCA---CTT------------------GA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--C-GCAGATG---AC--AACAAAACA-TTGCAAGATGT-TTATTC-A---GTTTGATTTTATt
gi|14 : A-GAATCACTAGTAAAACA-TAATC-TGATTGGCCGAG----G-TCACGTGACCG-T-CGTGT-TT-ACATTGC-A-ACAAAACG-TCGT---G-T-----------------------------TC-TT--------------GTCTCA---CTTTCGTTTC-CAGT-GAAACGA---ACA-----AA--CC--CGAGTGTTCCACAATGACCC-GCAGACG---ACAAAAC-AAATA-TAGCAAGGT-T-Tgc
gi|15 : A-TCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCCGAAAAG-G-TCACGCAACTG-T-CCTGT-TT--------------------------------C----------ATCCCT-TCGGATATC-------------------------------TCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--TGAGTGGACTG-AACGA--C-GCAGATG---AC--AAC-AAACA-TGACAAGGT-T-T
gi|16 : tgc-CCTCA-TATAAA-GAATCACGAGTAAAACA-AAATC-TGATTGGCAGATAAG-G-TGGCGTG
gi|16 : gGC-AGATAAGGTG-GCGT---G-TTCC----------ACCCTT-TGGGA----------------------------------TTTGTTTC-CAGT-TAAATGA---ACA-----AA--CCCTCGAGAGCTCCA-AATGA--T-GCAGATA---AC--AAC-AAACttccaccctttgggatttgtttccagttaaatgaacaaaccctcgagagctccaaatgatgcagataacaacaaac
gi|17 : gcctcatataaagaatcacgagtaaaacaaaatctgattgAA-AAATCCCTAGTAAAACA-GAATC-TGACAGGCCGTTAAG-G-TCACGTGACTG-T-CGTAT-T--------------GAAACG---------------------------CCT-TCGGATATCCC-TCGGATTCGTACGAGAGTTTCGGCTCTTTCGTTTG-CAG-----ACGAGTTACA-----AA--C
gi|18 : tcT---G-TTCG----------ATCCCTGTCAGCTAGCT---T--------------GTTTCA---CTT--GTATC-CAGT-GAAATGA---ACA-----AA--CC--CAAGTGTTCCG-AATGA--T-GCAG---------------AACT-TGACCATG--T-TTATTC-A---CTTTAATTATAT
gi|19 : AAATGA---ATACAAAAAA--CC--CATGTGCTCCG-AATGA--C-GCAGATG---AC--AAC-AAACA-TGGCAAGGCAT-TTA-TC-A----TTTGATTTgc
gi|2 : ttgggtacagattatcttcatctaaatcagTTATTATA-CATAA-TATGAA-GAATTACTAGTAAAACA-GAATC-TCACTGACCGACAAC-G-TTATGTAACCG-T-CGTGT-TT-ACCTTGT-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TTGAATATTTCTTT--------------TTTTCA---CTTCCGTTTC-CAAT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCT-AGTAA--C-ACAGACA---AC--AAC-AAACA-TGAC-AGGT-T-TTATTT-G---TTTTGATTTTATatgc
gi|20 : TAAA-GAATCACCAGTAAAACA-GAATC-TGATTGGCCGAGAAG-G-TCACGTGACCG-C-CATGT-TT-GCTCTGC-A-ACAAAACg
gi|21 : gttAATCATCAGTAAAAGA-GAATC-TGATTGGTCGACTAG-G-TCAGATGACTG-T-CGTCT-TT-GTCCTGC-A-ACAAATCA-TAGT---A-TTCC----------ccttcatcgctgaaaatattt
gi|22 : gatTCA-TTTAAA-TA-TAATCAGTGAACCG-CAATC-TGATTGATGAAGAAG-G-TCATGTGACTG-T-CATGT-TC-ACCTTGG-A-ACAAA----TCAT---G-TTtctct
gi|23 : TC-CAGT-TAAATGA---ACA-----AA--CC--TGCGTGTTCCG-AATGA--C-GCACACA---AC--AAA-AAACA-TGGCAAGGT-T-TTATTC-T---TTTTGA
gi|24 : TCTG-AATGA--C-GCAGACG---AC--AAC-AAACA-TG--------T-TTATTC-A---TTTTGATTTTAT
gi|25 : caaTATCATA-CCTCA-TATAAA-GCATATTTAGGAAAGCA-GAATT-TGATTGGCCAAgc
gi|26 : --------------GTCTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--C
gi|3 : TTATTATAACCTCACTATAAG-AAATCACTAGT-AAACACGAATC-TGA-TGGCTGAGAAG-GTTCACGTG--CGTT-CATGT-TT-AACCTGCAA-ACAAAACA-TCAT---GTTTCC----------A-CCCT-TCGGATATAAA-TT--------------GTTTCA---TTATCGTTTCAAAGT-TAAATG----ACA-----AA--CC--TGATTGTTCCGAAATGA--CGGCAG-----------AC-AAACA-TGG-AAGGT-T-TGATTC-A----TTTGATTTTA
gi|4 : TTATCATA-CCTCA-TATAAA-GAATCGCTAGTAAAACA-TATTC-TGATTGGCCGAGAAG-G-TCATGTGACCG-T-CGTGT-TT-ACCCTGC-A-ACGAAACG-TCGT---G-TTCC----------ACCCCT-TGGAATATCTT-TT--------------ATTTCA---CTTTCGTTTG-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACG---AC--AAC-AAACA-CGGCAAGGT-T-TTATT--A---TTTTGATTTTATaatg
gi|5 : ATA-CCCCA-TCTACA-GAATGACTAGTAAAACA-GAATC-TGATTGGCCGAG----G-TCATGTGACCG-TACG-GT-TT-ACCCTAC-A-ACAAAACG-TCGT---G-TTCC----------ACCCCT-TCGGATATCTC-TT--------------GCTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--TC--CGAGTGTTCCG-AATGA--C-GCGGACG---AC--AAC-AAATA-TGGCAAGGT-T-TTATTC-A---TTTTGATTTTAT
gi|6 : taTATA-CCTCA-TATAAA-GAATCACTAGTAAAAAA-GAATC-TGATTGGCCGAG----G-TCACGTGACCA-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCGT---G-TTCC----------ACTCCT-TCGGATATCTC-TA--------------GTTTCA---CTTTCGTTTT-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGATG---TC--AAC-AAACA-TGGCACGGT-T-TTATTC-T---TTTTAATTTTATg
gi|7 : TTATCATA-CCTCA-TATAAA-GAATC-------------------TGATTGGCTGAGAAG-G-GCATGTGACTG-T-TGTGT-TTTACCCTGC-A-ACAAAATG-TTGTCATG-TTCC----------ATCCCT-TCGGATAT-TC-TT--------------GTTTCA---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--TGAATGTTTTG-AATGA--C-GCAGATG---AT--AAC-AAACA-TATAAATGG-T-TTATTCTT---TTTTGAATTTATg
gi|8 : A-CCTCA-TATAAA-GAATCACTAGTAAAACA-GAATC-TGATTGGCTGAGAAG-G-TCACGTGACCG-T-CATGT-TT-ACCCTGC-A-ACAAAACA-TCAT---G-TTCC----------ACCCCT-TCGGATATAAA-TT--------------GTTTCA---CTTTCGTTTC-AAGT-TAAATGA---ACA-----AA--CC--TGATTGTTCCG-AATGA--C-GCAG-----------AC-AAACA-TGGCAAGGT-T-TGATTC-A---TTTCGATTTTATg
gi|9 : CTCA-TATAAA-GAATCACTAGTGAAGTA-GAGTC-TGGTTGACCGAGAAG-G-TCACGTGCCCG-T-CGTGT-TT-ACCCTGC-A-ACAAAACG-TCGT---G-TTCC----------TTCCCT-TCGGATATCTC-----------------ATTTCG---CTTTCGTTTC-CAGT-TAAATGA---ACA-----AA--CC--CGAGTGTTCCG-AATGA--C-GCAGACA---AC--AAG-AAGTA-TGGCAAGGT-T-TTGTTC-A---TATTGATTTTg