lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 4 33 66666666666666666666666 1111 222222222 11 22222 22 1 333333333333333 1111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000 111 1111 444444444444 111 55555555555555555555555555555555555555555555555 333333333333333333 1 555555555555555555555555555 11 1 1 55555555555555555555555555555555555555555555555555555555555 11 11111 11111111111111 11
lowQualScore : 7 555 0 2 3 2 11 2 0 00000000000000000000000 0 99 0 5 5 4 2222 222222222 6 33 88 88888 6 66 00 3 111111111111111 0000 8 5 1 00000000000000000000000000000000000000000000000000000000000000000000000000000 777 8 2 6 6666 444444444444 6 777 11111111111111111111111111111111111111111111111 3 444444444444444444 1 2 999999999999999999999999999 9 33 3 0 2 33 6 0 9 3 1 6 0 66 22222222222222222222222222222222222222222222222222222222222 888 6 1 88 5 22222 777 4 8 4 4 4 4 8888 44 55555555555555 2 2 3 44 6666 55 9 3 9999 666 55 55 55
lowQualScore : . ... . . . . .. . . ....................... . .. . . . . .... ......... . .. .. ..... . .. .. . ............... .... . . . ............................................................................. ... . . . .... ............ . ... ............................................... . .................. . . ........................... . .. . . . .. . . . . . . . .. ........................................................... ... . . .. . ..... ... . . . . . . .... .. .............. . . . .. .... .. . . .... ... .. .. ..
lowQualScore : 0 555 0 5 0 5 00 8 8 44444444444444444444444 8 44 9 7 7 0 1111 999999999 7 11 66 88888 0 99 66 8 666666666666666 6666 6 7 4 88888888888888888888888888888888888888888888888888888888888888888888888888888 222 0 5 5 0000 000000000000 5 555 55555555555555555555555555555555555555555555555 8 888888888888888888 4 0 777777777777777777777777777 8 55 5 2 5 22 7 7 8 0 2 1 0 11 99999999999999999999999999999999999999999999999999999999999 000 6 7 99 0 55555 888 4 9 4 4 4 0 5555 00 44444444444444 1 1 1 22 5555 88 2 1 6666 555 00 99 00
consensus : GAAATATTTTTTTTTAAAAACCTGTTATTAAGTTTTGTTACCATCGATTTATTTAAACATNGCATAT-TCTACTTTAAATATGTATGTTTTCCTTT----AA-----------AT-A-TTTTTC-CTCACTTGGTCCGGATTAA-GGG-CANATCT----TTGAG---------CCCTGACAATATTCCCTGCA-GTANAAAAGACACGTTCACTGGGAATTTCGAAAGTGAAC--TG--TGCAAAGCATTAATCTCG-CTN-----------AGTT----GGGTTTTGATTCAGACA-TTA-TTTGTTTGA-------ATTCG-A--------TTGTC--GA--ATGGAAG--AAG-T------TCTCACTGCGAATACA-TTTTTAAAGATGTACTTTCAAGCG-CGTNTGCAAATAGGACAG------T----NACATGT---TGTTTCC-GGTCA-CG---AT----CTTTGCATA---TCCGTT---CGGCC-CACGCTAGATTCGTT-----GCTCG--AT---GTACGAAACATCCGCATCGCAATGAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATANTTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGNTAAAGTAGGC-TAGTTTCATTGC-GCCG-CAGCT----GTA--TTC-A-TCT--CT-----------G------TCCGGA-GCC--ATTTTGAAATT--ATGAATC-NGAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----GCGA-TGCAGT-------T------TCAACGTATCGTGAA-TCGA--ACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( gi|3 ) : GAAATTTTTTTTTTTAAAAAC-TGTT-TTAAGTTTTGTTACCATCGATTTATTTAAACATTGCATATATCTACTTTAGATATGTATGTTTTCCTTT----AA-----------AT---TTTTTC-CTCACTTGGTTTGGATTAA-GGG-CACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGAC--TG--TGCATAGCATTAATCTCG-TTT-----------AGTT----GGATTTTGATTCAGACA-TTA-TT--------------ATTC--A--------TTGTC--GA--ATGGAAGATAAGTT------TCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCG-CGTCTGCAATTGGGACAG------T----TACATGT---TGTTTCA-AGTCA-CG---AT----CTT-GCATAGGGTCCGTC---CGGCC-CACGCTAGATTTGTT-----GCTC---AT---GTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCA-CAGCT--A-GTA--TTC-A-TCT--CT-----------G------TC----------ATTTTGAAATT--ATAAATC-AGAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----GCGG-TGCAGT-------T------TCAACGTATCGTGAA-TCGA--ACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTA
gi|2 : GAAATATTTTTTTTTAAAA-C-TGTTATTAAGTTTTGTTACCATCGATTTATTTAAACATTGCATAT--CTACCTTAAATATGTATGTTTTCCTT------A-----------AT---TTTTTT-CTATCTTGGTTTGGATTAA-GGG-CACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTATAAATA-CATGTTCACTGGGAA---CAAAAGTGAAC--TG--TGCAAAGCATTAATCTCG-CTT-----------AGTT----GGATATTAATTCAGACA-ATATTT--------------GTTTGAA--------TTGTCA-GA--ATGGAAG------T------TCTCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCG-
gi|6 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactTTTTTTTAAAAACCTGTTATTAAGTTTTGTTACCATCGATTTATTTAAACAGTGCATAT--CTACTTTAAATATGTATGTTTTCCTTTATAAAA-----------AT---ATT----GTCACTT-ATTTGGATTAG-GGGTTACATCT----TTGAG---------CCCCGACATTATTCTCTGCA-GTAT-AAAGGCACGTTCACTGGGAA---CAAAAGTGAAC--TG--TGCAAAGCATTAAGCTCA-CTT-----------AGTT----GGATTTTGATTCAGACA-TTATTT--------------GTTCG-A--------ATCCA--GA--ATGGAAG--AAG-T------TCTCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCG-CGTCTGCAAATAGGACAG------T----GACATGT---TGTTTGC-ACTCACCG---AT----C----CAT------CG---------C-CACGCTAGAT------------------T---ATACGAAACATCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|9 : gaaataTAAGTTT-GTTATATTCTATTCAATTAAACATGACATATTTATATATTAAATGTGCATGTTTTCCTTT----AATTGATAGAAATATAAATGTTTC-C--ACTTGGTCCGGATTAATGAG-CAGATCT----TTGAG---------CCTTGACAATA
gi|1 : ttaaggctacaatgatacaccaattcatatatatcacaatatgcagttcagggtatgatatttatcaataaagaaatataattttgaaaaagaAGTTTTGTTACCATTTACTTATTTAAACATGGCAT
gi|4 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcTTTTGTTACCATCGATTTATTTAAACATTGGATAT--CTATTTCAAATATGTATGTTTTCCTTC----AA-----------CT---TTTTTCTCTCACTTGGTTTGGATTAA-GGG-CAAATCT----TTGAG---------CCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAAC--TG--TGCAAAGCATTTATCTCG-CTC-----------AGTT----GGATTTTGATTCAGACA-TTA-TTTGTTTGA-------ATCC--ATAACTCATTTGTCA-GA--ATGGAAG--AAG-T------TCTCACTGCAAT-ACA-TTTGTAAAGATGTACTTTAAAGCG-GGTCTGCAAACAGGACAG------T----GACATAT---TGTTTCC-GGTCA-CA---GTAAAGTTT-GCATA-TGTCCAT----CG--C-CACGCTAGATTTGTT-----GCTC---GT-------------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCT-AAG---------------A-TCT--CTGTCCGGAA---G------TC----------ATTTTGAAATT--ATGGATC-GAAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----GCAA-TGCAGT-------T------TCAACGTGTCGTGAA-TCGA--ACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTActttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|5 : TTTGTTACCATTTATTT--TTAATTATGG--TATATCTACTTTAGATA--TATGTTTTCCTTT----GA-----------ATTA-TTTTTT-CTCACTTGGTGCGGATTAA-GGG-TATATCT----TTGAG---------CCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG--TACAAAGCATTAATCTTG-CTA-----------AGTT----GAATTTTA----AGACATTTG-TTTGAATCCAGA----ATTCA-A--------TTGTTCAAA--ATGGAAG-TAG--T------TCTCA--
gi|1 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagattaaaaacctaaattaatataatcagTCAATTGGTCTGCATTAA-GGG-CATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACActg
gi|23 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatcttACTTGGTCCGGATTAA-GGG-CATATCTTAACTTGAG---------CTCTgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|1 : TATTCCCTGCA-GTAGGAGA--CACGCTCACTGGGAATTTCGAAAGTGAAC--TG--GGTATAA-AGCAATCTCA-CTA-----------TGTT----AGGTTTTAAT--AGACA-TTA-TTTGTTTGA-------ATCC--AGAATTGAATTGTC--CACAATGGAAGA--AGTTCACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTG-CGTATGTGAATAGGGCAG------TGACATACATGTATTTGTTTCCTAGTCA-CAGAAAT----CTTTGCAT-----TTGTT---TGGCGGCATTTTATATCCATTTGCACGCTAG--AT---GTACAAAACATCCG------AAT-----CATATT----------------TTGTC-----TGCTACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTG-----T--C-GTA--GTC-A-TCT--CT-----------G------CCTGGAAGCC--ATTTTGAAATT--ATAAATC-TGAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----GCGA-TGCAGT-------T------TTAACGTATCATGAA-TCAA--ACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cagc
gi|14 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtAAAAGATACCTTCACTGGGAA----GAAAGTGAAC--TGAATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACA-TTA-TT--------------
gi|7 : CACATTCACTGAAAATTTCAAAAGTGAAC--TGGGTACAAAGCATTAATCTCA-CTA-----------AGTTTAAGAGGTTTTAATGCAGACA-TTA-TTTCTTTGAATCCAGAATTC--AA-------TTGTC--CATAATGGTAGA--AGTT-------CTCA--ATGA------CTTTCAAACGCGTATGCCCCAGTGACATATA-AATTC--ACAGAAATCTT----TTCAT-T---TGTTT---GGTGG-CG----------TT-TCATA---TCAATT----GGC---ATGCTAGGTTTGTT-----GCTC---ATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATTCA-------AAATGATCCCCAA-ACCTAAATTTGATGGCT--------T-TAG--TCATT-C-ATCATCAGTTGAA-G-A--TCC-A-CCT--CT-----------G------tgtttgaatccagaattcaattgaccacaatcgaagaagttctcattggcaata
gi|22 : aagagnagaCACATTCACTGGAAGTTTCAAAAGTGAAC--TGGATACAAAGCATTAATCTCA-CTA-----------AGTT----
gi|21 : a---AT----CTTTGCATA---TATGTCAATCG--C-CACTCTAGATTTGTT-----GCTCGTTAT---GTACGAAACA
gi|20 : tcacataaTGAATGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAAC
gi|2 : ACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCG-CAG-------TA--TTC-A-TCT--CT-----------G------TCCGGAGGCC--ATTTTGAAATT--ATAAATT-GGAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACGCGA-TGCAGT-------T------TTAACGTATCGTGAA-TCGA--ACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|8 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGC-----CT--ATGTA--TTCTACTCT--CT-----------G------TCCGGAAGCCATATTTAGAAATC--AT-TATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----GCGA-TGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGA--ACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTat
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTG-C--CT-----TA--TTC-A-TCT--CT-----------G------TCCGG-------ATATC---ATT--TTGAATC-CGAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----GCAA-CACAGT-------T------TCAACAT---------------ACCGTGG----TTG-AAT-TTA-CTG-------------------------ATT--TATCGTTCCACTCCTA
gi|10 : GATGGCTAAAGGAGGAATATTTTCATTGT-GCT-----------GTG--TT--A-TCT--CTCTGAACCTGAAG------CC----------TTTTTGAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----GAGA-TGCAGA-------T-------CAACATATCATGAAATTGA--ACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTAat
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCT----GTT--G-GTAACTTC---TCTGCCT-----------GGAAGCCTT----------TTTTTGAAAT---ATGA-TC-TGAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGA--A-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cg
gi|15 : attaaAAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----GCGA-TGCAGT-------T------TCAGTGTATCGTGAA-TTGA--ACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----GCGA-TGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGA--ACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|13 : ACTGAAC-C----ACAG-TATAGT-------G------TAAA-GTATAGTGAG-TCAA--ACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|17 : tctgtgaagtcatttttgcaatatagttttaaagccagtttaaattgatgcaaaccaaaaatGG-TATAGT-------G------TAAAT-TATCGTAAA-TTGA--ACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCACtattgaaa
gi|18 : tgattcatGG-TATAGT-------G------TAAAT-TATCGTAAA-TTGA--ACTGTAG----CAC-AATATTA-CTGTG----ATAT--------------CATT--AATTGTTGCACctttatgtggattagaattc
gi|1 : tgattcat-------T------TCAATGTATCGTGAG-CTAAATATCGT-G----TT---AT-GTA-TCGTGA---G--------G--TCT----GTG--TATTGTTGCATCCCTActttatgtggattagaattc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 3333333333333333333333333 111 1111 222222222 5555555555555555555555555 111 444444444444444444444444 333 11 222222222222 6666666666666666666666666666666666666 1111111 22 333333333 111 222222 33333333 111 222222222 6666666666666666666 11111 2222 22222222 11 1 444444444 111 11 11 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 7777777777777777777777777 5 222 1 5 5 1 0000 000000000 0000000000000000000000000 000 0 1 888888888888888888888888 444 1 66 66 88 222222222222 1 9999 6 7777777777777777777777777777777777777 66 66 6666666 5 6 00 1 99 6 1 222222222 444 1 333333 22222222 333 666666666 55 0000000000000000000 66 66666 6666 1 0 2 4 22222222 1 8 22 1 22 1 3 5 7 1 5 3 0 66 888888888 00 5 5 9999 3 555 4 4 55 666 22 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ......................... . ... . . . . .... ......... ......................... ... . . ........................ ... . .. .. .. ............ . .... . ..................................... .. .. ....... . . .. . .. . . ......... ... . ...... ........ ... ......... .. ................... .. ..... .... . . . . ........ . . .. . .. . . . . . . . . .. ......... .. . . .... . ... . . .. ... .. .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 0 77 7 9999999999999999999999999 7 000 1 0 0 0 6666 000000000 0000000000000000000000000 000 7 0 111111111111111111111111 999 7 11 11 33 888888888888 0 4444 4 6666666666666666666666666666666666666 99 99 2222222 0 5 33 4 88 7 0 000000000 000 0 000000 44444444 000 777777777 77 7777777777777777777 55 77777 7777 0 2 5 2 88888888 0 0 22 0 00 0 2 7 7 0 1 1 0 11 555555555 44 0 0 4444 7 999 4 4 00 999 77 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT----T-TTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAAC--T--G--TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGA--ATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAG-T-GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAA-CTAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATNGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT----T-TTTCCTCACTTGGTCCGGATTAA-GGGC-ANATCT----TTGAG---------CCCT-------------------------GACAA---TATTCCCTGCAGTANAAAA------------------------GACACGTTCACTGGGAATTTCGAAAGTGAAC--T--G--TGCAAAGCATTAATCTCG------------CTNAGTT----GGGTTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------GATTGTC--GA--ATGGAAGA--A-------GTT-CTCACTGCGAATAC-ATTTTTAAAGATGTACTTTCAAGCGCGTNTGC---------AAATAGG---ACAGTNA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTCGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATGAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATANTTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGNTAAAGTAGGC-TAGTTTCATTGC-GCCGCAGCT-GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAA-CTAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGGCAT-CTT--TCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAGGGTTATTCCCTGCAGTAGAAAAACAGGGTTATTCCCTGCAGTAGGAGACACGCTCACTGGGAATTTCGAAAGTGAAC--TGGG--TATAAAGC---AATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACA--ATGGAAGA--AGTTCACTGTT-CTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GC------------TACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTT---GTC-GTAGTC-A-TCTCTGC----CTGGAA-G-CCAT-TTT--GAAATT--ATAAATCT-GAA-CCAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Ctcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaGATGGCTAAAGGAGGAATATTTTCATTGT-GC------T-GTGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAA-CTAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--CT--TATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAA-TTAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAA-T--ATG-ATCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATAC-GA-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAA------------------------GATACCTTCACTGGGAA----GAAAGTGAAC--T--GAATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TC-------AATTGACCACA--ATCGAAGA--A-------GTT-CTCATTGGCAATAtattgaaa
gi|15 : AA-CTAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T----T-TTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCT-------------------------GACAA---TATTATCTGCAGTATAAA-------------------------TACATGTTCACTGGGAA---CAAAAGTGAAC--T--G--TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------GA-------------------ATTGTCA-GA--ATG---GA--A-------GTT-CTCACTGGAAATAC-ATTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAA-CTAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaaAT---CTTTGCATA---TATGTCAATCG---CCACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAAC--T--GGATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT-------------------------
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T----T-TTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------AGCACGTTCACTGGGAA---CGAAAGTGGAC--T--G--TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC--------ATTGTC--GA--ATGGAAGATAA-------GTTTCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC---GAT---CTT-GCATAGGGTCCGT---CCGGC-CCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAA-CTAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT----T-TTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCT-------------------------GACAA---TATTGTCTGCAGTATAAAA------------------------GACACGTTTGCTGGGAA---CAAAAATGAAC--T--G--TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTC-------ATTTGTCA-GA--ATGGAAGA--A-------GTT-CTCACTGC-AATAC-ATTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC---AGTAAAGTTTGCATATG-TCCA----TCG---CCACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAA-CTAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT----T-TTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCT-------------------------AACGA---TATCCCCTACAATAGAGAA------------------------GACACGTTCACTGGGA------AAAATGAACTAT--G--TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TC-------AATTGTTCAAA--ATGGAAGT--A-------GTT-CTCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT----T-GT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCC-------------------------GACAT---TATTCTCTGCAGTATAAAG------------------------G-CACGTTCACTGGGAA---CAAAAGTGAAC--T--G--TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT-------CC-------A--------GA--ATGGAAGA--A-------GTT-CTCACTGTGAATAT-ATTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACC--GAT---C----CAT-------------CG---CCACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGAGNA------------------------GACACATTCACTGAAAATTTCAAAAGTGAAC--T--GGGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTC-------AATTGTC--CATAATGGTAGA--A-------GTT-CTCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC---G------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGGCT
gi|8 : aAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA--T-GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAA-CGAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAA-TGTTTC--CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTT-------------------------GACAA---TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 222 22 222222222222 6666666666666666666666666666 1111111 333333333 111 222222 33333333 111 333333333333 6666666666666666666 11111 2222 22222222 11 1 333333333 11111111111 11 111 111 11111 11111111111111
lowQualScore : 3 55 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 5 4 333 1 66 44 222222222222 1 9999 6 0000000000000000000000000000 4 1 66 5 6666666 6 3 1 99 3 222222222 444 333333 22222222 333 000000000000 2 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 6 1 22 1 3 5 7 5 3 0 66 999999999 00 5 5 66666666666 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . .. .. .. . ... . . .. . ........................ . . . . . . . .... ......... . . ... . .. .. ............ . .... . ............................ . . .. . ....... . . . .. . ......... ... ...... ........ ... ............ . ................... . ..... .... . . . . ........ . . . . .. . . . . . . . .. ......... .. . . ........... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 88 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 7 9 333 7 11 44 888888888888 0 4444 4 9999999999999999999999999999 5 4 99 0 2222222 5 0 4 88 7 000000000 000 000000 44444444 000 111111111111 5 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 4 0 00 0 2 7 7 1 1 0 11 222222222 44 0 0 44444444444 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCCCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAAC--TGG-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAG--AAG-TTC-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAAC--TG--TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAG--AAG-TTC-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGT--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAtcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaTATTCCCTGCA-GTA--GGAGACACGCTCACTGGGAATTTCGAAAGTGAAC--TGGGTATAAAGCA---ATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAG--AAG-TTCACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCAC-AGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GCT------------ACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGG-AAG-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtGATGGCTAAAGGAGGAATATTTTCATTGT-GC-----T--GTGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAAGATACCTTCACTGGGAA----GAAAGTGAAC--TGAATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TCA-------ATTGACCACAATCGAAG--AAG-TTC-------TCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTATAAA-TACATGTTCACTGGGAA---CAAAAGTGAAC--TG--TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G------------A-------ATTGT-CAGAATG---G--AAG-TTC-------TCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAGT----ATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaa---AT---CTTTGCATA---TATGTCAATCG--C-CACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAAC--TGGATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT
gi|3 : GAAATTTTTTTTTTTAAAAA-CTG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGAC--TG--TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC--------ATTGTC--GAATGGAAGATAAGTTTC-------TCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC-G---AT---C-TTGCATAGGGTCCGT---CCGGCC-CACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT--------------CAT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAAC--TG--TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTCA-------TTTGT-CAGAATGGAAG--AAG-TTC-------TCACT-GCAATACA-TTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC-A---GTAAAGTTTGCATATG-TCCA----TCG--C-CACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG--TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TCA-------ATTGTTCAAAATGGAAG--TAG-TTC-------TCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCCGACATTATTCTCTGCA-GTATAAAGG-CACGTTCACTGGGAA---CAAAAGTGAAC--TG--TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAG--AAG-TTC-------TCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACCG---AT---C----CAT-------------CG--C-CACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNAGACACATTCACTGAAAATTTCAAAAGTGAAC--TGGGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTCA-------ATTGTCCATAATGGTAG--AAG-TTC-------TCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC-G---------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTTGACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 5555555555555555555555555 111 444444444444444444444444 222 22222 222222222222 666666666666666666666666666 1111111 333333333 111 222222 33333333 111 222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 0000000000000000000000000 000 0 888888888888888888888888 333 1 88888 222222222222 1 9999 6 000000000000000000000000000 3 4 1 66 6666666 5 6 3 1 99 3 222222222 444 333333 22222222 333 666666666 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 22 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... ......................... ... . ........................ ... . ..... ............ . .... . ........................... . . . .. ....... . . . . .. . ......... ... ...... ........ ... ......... .. ................... . ..... .... . . . . ........ . . .. . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 0000000000000000000000000 000 7 111111111111111111111111 333 7 00000 888888888888 0 4444 4 888888888888888888888888888 4 5 4 99 2222222 0 5 0 4 88 7 000000000 000 000000 44444444 000 777777777 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 22 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCCCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAGGGTTATTCCCTGCAGTAGAAAAACAGGGTTATTCCCTGCAGTAGGAGACACGCTCACTGGGAATTTCGAAAGTGAACTGG-G-TATAAAGC---AATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTTCACTGTT-CTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GC------------TACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGGAA-G-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Ctcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAA------------------------GATACCTTCACTGGGAA----GAAAGTGAACT-G-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TC-------AATTGACCACAATCGAAGA--A-------GTT-CTCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCT-------------------------GACAA---TATTATCTGCAGTATAAA-------------------------TACATGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G-------------------AATTGT-CAGAATG---GA--A-------GTT-CTCACTGGAAATAC-ATTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaaAT---CTTTGCATA---TATGTCAATCG---CCACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACT-G-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT-------------------------
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------AGCACGTTCACTGGGAA---CGAAAGTGGACT-G---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC-------A-TTGTC--GAATGGAAGATAA-------GTTTCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC---GAT---CTT-GCATAGGGTCCGT---CCGGC-CCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCT-------------------------GACAA---TATTGTCTGCAGTATAAAA------------------------GACACGTTTGCTGGGAA---CAAAAATGAACT---G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTC-------ATTTGT-CAGAATGGAAGA--A-------GTT-CTCACT-GCAATAC-ATTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC---AGTAAAGTTTGCATATG-TCCA----TCG---CCACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCT-------------------------AACGA---TATCCCCTACAATAGAGAA------------------------GACACGTTCACTGGGA------AAAATGAACT-ATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TC-------AATTGTTCAAAATGGAAGT--A-------GTT-CTCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCC-------------------------GACAT---TATTCTCTGCAGTATAAAG------------------------G-CACGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--A-------GTT-CTCACTGTGAATAT-ATTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACC--GAT---C----CAT-------------CG---CCACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNA------------------------GACACATTCACTGAAAATTTCAAAAGTGAACT-G-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTC-------AATTGTCCATAATGGTAGA--A-------GTT-CTCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC---G------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTT-------------------------GACAA---TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 222 333 222222222222 55555555555555555555555555555 1111111 333333333 111 222222 33333333 111 2222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 5 4 333 1 000 222222222222 1 9999 6 88888888888888888888888888888 4 1 66 5 6666666 6 3 1 99 3 222222222 444 333333 22222222 333 4444444444 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 6 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... . . ... . ... ............ . .... . ............................. . . .. . ....... . . . .. . ......... ... ...... ........ ... .......... .. ................... . ..... .... . . . . ........ . . . . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 7 9 333 7 777 888888888888 0 4444 4 11111111111111111111111111111 5 4 99 0 2222222 5 0 4 88 7 000000000 000 000000 44444444 000 4444444444 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 4 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCCCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAtcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaTATTCCCTGCA-GTA--GGAGACACGCTCACTGGGAATTTCGAAAGTGAACTG-GGTATAAAGCA---ATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTT-CACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCAC-AGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GCT------------ACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGG-AAG-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAAGATACCTTCACTGGGAA----GAAAGTGAACTG-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TCA-------ATTGACCACAATCGAAGA--AGTT-C-------TCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTATAAA-TACATGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G------------A-------ATTGT-CAGAATG---GA--AGTT-C-------TCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaa---AT---CTTTGCATA---TATGTCAATCG--C-CACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACTG-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGACTG---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TCA--------TTGTC--GAATGGAAGATAAGTTTC-------TCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC-G---AT---CTT-GCATAGGGTCCGT---CCGGCC-CACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAACT--G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTCA-------TTTGT-CAGAATGGAAGA--AGTT-C-------TCACT-GCAATACA-TTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC-A---GTAAAGTTTGCATATG-TCCA----TCG--C-CACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TCA-------ATTGTTCAAAATGGAAGT--AGTT-C-------TCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCCGACATTATTCTCTGCA-GTATAAAGG-CACGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--AGTT-C-------TCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACCG---AT---C----CAT-------------CG--C-CACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNAGACACATTCACTGAAAATTTCAAAAGTGAACTG-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTCA-------ATTGTCCATAATGGTAGA--AGTT-C-------TCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC-G---------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTTGACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 5555555555555555555555555 111 444444444444444444444444 222 22222 222222222222 666666666666666666666666666 1111111 333333333 111 222222 33333333 111 222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 0000000000000000000000000 000 0 888888888888888888888888 333 1 88888 222222222222 1 9999 6 000000000000000000000000000 3 4 1 66 6666666 5 6 3 1 99 3 222222222 444 333333 22222222 333 666666666 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 22 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... ......................... ... . ........................ ... . ..... ............ . .... . ........................... . . . .. ....... . . . . .. . ......... ... ...... ........ ... ......... .. ................... . ..... .... . . . . ........ . . .. . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 0000000000000000000000000 000 7 111111111111111111111111 333 7 00000 888888888888 0 4444 4 888888888888888888888888888 4 5 4 99 2222222 0 5 0 4 88 7 000000000 000 000000 44444444 000 777777777 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 22 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCCCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAGGGTTATTCCCTGCAGTAGAAAAACAGGGTTATTCCCTGCAGTAGGAGACACGCTCACTGGGAATTTCGAAAGTGAACTGG-G-TATAAAGC---AATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTTCACTGTT-CTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GC------------TACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGGAA-G-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Ctcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAA------------------------GATACCTTCACTGGGAA----GAAAGTGAACT-G-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TC-------AATTGACCACAATCGAAGA--A-------GTT-CTCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCT-------------------------GACAA---TATTATCTGCAGTATAAA-------------------------TACATGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G-------------------AATTGT-CAGAATG---GA--A-------GTT-CTCACTGGAAATAC-ATTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaaAT---CTTTGCATA---TATGTCAATCG---CCACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACT-G-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT-------------------------
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------AGCACGTTCACTGGGAA---CGAAAGTGGACT-G---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC-------A-TTGTC--GAATGGAAGATAA-------GTTTCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC---GAT---CTT-GCATAGGGTCCGT---CCGGC-CCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCT-------------------------GACAA---TATTGTCTGCAGTATAAAA------------------------GACACGTTTGCTGGGAA---CAAAAATGAACT---G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTC-------ATTTGT-CAGAATGGAAGA--A-------GTT-CTCACT-GCAATAC-ATTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC---AGTAAAGTTTGCATATG-TCCA----TCG---CCACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCT-------------------------AACGA---TATCCCCTACAATAGAGAA------------------------GACACGTTCACTGGGA------AAAATGAACT-ATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TC-------AATTGTTCAAAATGGAAGT--A-------GTT-CTCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCC-------------------------GACAT---TATTCTCTGCAGTATAAAG------------------------G-CACGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--A-------GTT-CTCACTGTGAATAT-ATTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACC--GAT---C----CAT-------------CG---CCACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNA------------------------GACACATTCACTGAAAATTTCAAAAGTGAACT-G-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTC-------AATTGTCCATAATGGTAGA--A-------GTT-CTCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC---G------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTT-------------------------GACAA---TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 222 333 222222222222 55555555555555555555555555555 1111111 333333333 111 222222 33333333 111 2222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 5 4 333 1 000 222222222222 1 9999 6 88888888888888888888888888888 4 1 66 5 6666666 6 3 1 99 3 222222222 444 333333 22222222 333 4444444444 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 6 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... . . ... . ... ............ . .... . ............................. . . .. . ....... . . . .. . ......... ... ...... ........ ... .......... .. ................... . ..... .... . . . . ........ . . . . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 7 9 333 7 777 888888888888 0 4444 4 11111111111111111111111111111 5 4 99 0 2222222 5 0 4 88 7 000000000 000 000000 44444444 000 4444444444 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 4 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCCCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAtcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaTATTCCCTGCA-GTA--GGAGACACGCTCACTGGGAATTTCGAAAGTGAACTG-GGTATAAAGCA---ATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTT-CACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCAC-AGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GCT------------ACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGG-AAG-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAAGATACCTTCACTGGGAA----GAAAGTGAACTG-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TCA-------ATTGACCACAATCGAAGA--AGTT-C-------TCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTATAAA-TACATGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G------------A-------ATTGT-CAGAATG---GA--AGTT-C-------TCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaa---AT---CTTTGCATA---TATGTCAATCG--C-CACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACTG-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGACTG---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TCA--------TTGTC--GAATGGAAGATAAGTTTC-------TCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC-G---AT---CTT-GCATAGGGTCCGT---CCGGCC-CACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAACT--G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTCA-------TTTGT-CAGAATGGAAGA--AGTT-C-------TCACT-GCAATACA-TTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC-A---GTAAAGTTTGCATATG-TCCA----TCG--C-CACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TCA-------ATTGTTCAAAATGGAAGT--AGTT-C-------TCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCCGACATTATTCTCTGCA-GTATAAAGG-CACGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--AGTT-C-------TCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACCG---AT---C----CAT-------------CG--C-CACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNAGACACATTCACTGAAAATTTCAAAAGTGAACTG-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTCA-------ATTGTCCATAATGGTAGA--AGTT-C-------TCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC-G---------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTTGACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 5555555555555555555555555 111 444444444444444444444444 222 22222 222222222222 666666666666666666666666666 1111111 333333333 111 222222 33333333 111 222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 0000000000000000000000000 000 0 888888888888888888888888 333 1 88888 222222222222 1 9999 6 000000000000000000000000000 3 4 1 66 6666666 5 6 3 1 99 3 222222222 444 333333 22222222 333 666666666 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 22 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... ......................... ... . ........................ ... . ..... ............ . .... . ........................... . . . .. ....... . . . . .. . ......... ... ...... ........ ... ......... .. ................... . ..... .... . . . . ........ . . .. . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 0000000000000000000000000 000 7 111111111111111111111111 333 7 00000 888888888888 0 4444 4 888888888888888888888888888 4 5 4 99 2222222 0 5 0 4 88 7 000000000 000 000000 44444444 000 777777777 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 22 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCCCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAGGGTTATTCCCTGCAGTAGAAAAACAGGGTTATTCCCTGCAGTAGGAGACACGCTCACTGGGAATTTCGAAAGTGAACTGG-G-TATAAAGC---AATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTTCACTGTT-CTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GC------------TACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGGAA-G-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Ctcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAA------------------------GATACCTTCACTGGGAA----GAAAGTGAACT-G-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TC-------AATTGACCACAATCGAAGA--A-------GTT-CTCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCT-------------------------GACAA---TATTATCTGCAGTATAAA-------------------------TACATGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G-------------------AATTGT-CAGAATG---GA--A-------GTT-CTCACTGGAAATAC-ATTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaaAT---CTTTGCATA---TATGTCAATCG---CCACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACT-G-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT-------------------------
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------AGCACGTTCACTGGGAA---CGAAAGTGGACT-G---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC-------A-TTGTC--GAATGGAAGATAA-------GTTTCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC---GAT---CTT-GCATAGGGTCCGT---CCGGC-CCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCT-------------------------GACAA---TATTGTCTGCAGTATAAAA------------------------GACACGTTTGCTGGGAA---CAAAAATGAACT---G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTC-------ATTTGT-CAGAATGGAAGA--A-------GTT-CTCACT-GCAATAC-ATTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC---AGTAAAGTTTGCATATG-TCCA----TCG---CCACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCT-------------------------AACGA---TATCCCCTACAATAGAGAA------------------------GACACGTTCACTGGGA------AAAATGAACT-ATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TC-------AATTGTTCAAAATGGAAGT--A-------GTT-CTCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCC-------------------------GACAT---TATTCTCTGCAGTATAAAG------------------------G-CACGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--A-------GTT-CTCACTGTGAATAT-ATTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACC--GAT---C----CAT-------------CG---CCACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNA------------------------GACACATTCACTGAAAATTTCAAAAGTGAACT-G-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTC-------AATTGTCCATAATGGTAGA--A-------GTT-CTCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC---G------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTT-------------------------GACAA---TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 222 333 222222222222 55555555555555555555555555555 1111111 333333333 111 222222 33333333 111 2222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 5 4 333 1 000 222222222222 1 9999 6 88888888888888888888888888888 4 1 66 5 6666666 6 3 1 99 3 222222222 444 333333 22222222 333 4444444444 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 6 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... . . ... . ... ............ . .... . ............................. . . .. . ....... . . . .. . ......... ... ...... ........ ... .......... .. ................... . ..... .... . . . . ........ . . . . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 7 9 333 7 777 888888888888 0 4444 4 11111111111111111111111111111 5 4 99 0 2222222 5 0 4 88 7 000000000 000 000000 44444444 000 4444444444 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 4 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCCCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC-G---AT---CTTTGCATA---TCCGT---TCGGCC-CACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAtcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaTATTCCCTGCA-GTA--GGAGACACGCTCACTGGGAATTTCGAAAGTGAACTG-GGTATAAAGCA---ATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTT-CACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCAC-AGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GCT------------ACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGG-AAG-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAAGATACCTTCACTGGGAA----GAAAGTGAACTG-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TCA-------ATTGACCACAATCGAAGA--AGTT-C-------TCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTATAAA-TACATGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G------------A-------ATTGT-CAGAATG---GA--AGTT-C-------TCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaa---AT---CTTTGCATA---TATGTCAATCG--C-CACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACTG-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGACTG---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TCA--------TTGTC--GAATGGAAGATAAGTTTC-------TCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC-G---AT---CTT-GCATAGGGTCCGT---CCGGCC-CACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAACT--G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTCA-------TTTGT-CAGAATGGAAGA--AGTT-C-------TCACT-GCAATACA-TTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC-A---GTAAAGTTTGCATATG-TCCA----TCG--C-CACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TCA-------ATTGTTCAAAATGGAAGT--AGTT-C-------TCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCCGACATTATTCTCTGCA-GTATAAAGG-CACGTTCACTGGGAA---CAAAAGTGAACTG---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--AGTT-C-------TCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACCG---AT---C----CAT-------------CG--C-CACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNAGACACATTCACTGAAAATTTCAAAAGTGAACTG-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTCA-------ATTGTCCATAATGGTAGA--AGTT-C-------TCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC-G---------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTTGACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 22 333333333333333333333333 1111 222222222 5555555555555555555555555 111 444444444444444444444444 222 22222 222222222222 666666666666666666666666666 1111111 333333333 111 222222 33333333 111 222222222 6666666666666666666 11111 2222 22222222 11 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 3 0 5 11 22 6 000 0 1 44 6 333333333333333333333333 1 2 1 1 5 5 2 0000 000000000 0000000000000000000000000 000 0 888888888888888888888888 333 1 88888 222222222222 1 9999 6 000000000000000000000000000 3 4 1 66 6666666 5 6 3 1 99 3 222222222 444 333333 22222222 333 666666666 55 0000000000000000000 1 66666 6666 1 0 2 0 22222222 1 8 22 1 22 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . .. . ........................ . . . . . . . .... ......... ......................... ... . ........................ ... . ..... ............ . .... . ........................... . . . .. ....... . . . . .. . ......... ... ...... ........ ... ......... .. ................... . ..... .... . . . . ........ . . .. . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 2 8 0 00 22 7 000 7 3 77 7 666666666666666666666666 6 3 4 1 0 0 2 6666 000000000 0000000000000000000000000 000 7 111111111111111111111111 333 7 00000 888888888888 0 4444 4 888888888888888888888888888 4 5 4 99 2222222 0 5 0 4 88 7 000000000 000 000000 44444444 000 777777777 77 7777777777777777777 7 77777 7777 0 2 5 8 88888888 0 0 22 0 00 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCCCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCATTTACTTATTTAAACATGGCATCT-T
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTTT---------A----AAC-ATGG-CATCTTTCAATTGGTCTGCATTAA-GGGC-ATATCA----TTGAG---------CCCTGACAATATTCCCTGCAGGTAGAAAAGACAGGGTTATTCCCTGCAGTAGAAAAACAGGGTTATTCCCTGCAGTAGGAGACACGCTCACTGGGAATTTCGAAAGTGAACTGG-G-TATAAAGC---AATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTTCACTGTT-CTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATT---T--GT---TTGGCGGCATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GC------------TACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGGAA-G-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Ctcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttaGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAA------------------------GATACCTTCACTGGGAA----GAAAGTGAACT-G-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TC-------AATTGACCACAATCGAAGA--A-------GTT-CTCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACCTTAAATATGTATGTTTTCCTT---------------AAT--T---TTTTTCTATCTTGGTTTGGATTAA-GGGC-ACATCT----TTGAGGCCTGTGAGCCCT-------------------------GACAA---TATTATCTGCAGTATAAA-------------------------TACATGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G-------------------AATTGT-CAGAATG---GA--A-------GTT-CTCACTGGAAATAC-ATTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaaAT---CTTTGCATA---TATGTCAATCG---CCACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaACACATTCACTGGAAGTTTCAAAAGTGAACT-G-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGGC-ATATCTTAACTTGAG---------CTCT-------------------------
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATC-TACTTTAGATATGTATGTTTTCCTTT---------A----AAT--T---TTTTCCTCACTTGGTTTGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------AGCACGTTCACTGGGAA---CGAAAGTGGACT-G---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TC-------A-TTGTC--GAATGGAAGATAA-------GTTTCTCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCAC---GAT---CTT-GCATAGGGTCCGT---CCGGC-CCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--C-TATTTCAAATATGTATGTTTTCCTTC---------A----ACT-TT---TTTCTCTCACTTGGTTTGGATTAA-GGGC-AAATCT----TTGAG---------CCCT-------------------------GACAA---TATTGTCTGCAGTATAAAA------------------------GACACGTTTGCTGGGAA---CAAAAATGAACT---G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTC-------ATTTGT-CAGAATGGAAGA--A-------GTT-CTCACT-GCAATAC-ATTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCAC---AGTAAAGTTTGCATATG-TCCA----TCG---CCACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--C-TACTTTAGATAT--ATGTTTTCCTTT---------G----AATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGGT-ATATCT----TTGAG---------CCCT-------------------------AACGA---TATCCCCTACAATAGAGAA------------------------GACACGTTCACTGGGA------AAAATGAACT-ATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TC-------AATTGTTCAAAATGGAAGT--A-------GTT-CTCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTTTTT--AAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTT---------ATAAAAAT-AT---TGT----CACTTA-TTTGGATTAG-GGGTTACATCT----TTGAG---------CCCC-------------------------GACAT---TATTCTCTGCAGTATAAAG------------------------G-CACGTTCACTGGGAA---CAAAAGTGAACT-G---TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAAT----------------------CCAGAATGGAAGA--A-------GTT-CTCACTGTGAATAT-ATTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACC--GAT---C----CAT-------------CG---CCACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNA------------------------GACACATTCACTGAAAATTTCAAAAGTGAACT-G-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTC-------AATTGTCCATAATGGTAGA--A-------GTT-CTCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGC---G------TTT-CATA---TCAAT---T-GGC---ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT-TTATATATTAAATGTGCATGTTTTCCTTTAATTGATAGA----AAT-ATAAATGTTTC-CACTTGGTCCGGATTAATGAGC-AGATCT----TTGAG---------CCTT-------------------------GACAA---TA
blockSeqs : T C AA AT T CAG T AT A TAATTGATAGAAATATAAA T T T T T T C TAAC GCCTGTGAG . . . TTT G GAA ATCTTGATCTTG A TAAG A GAATCCAGAATTC A C C TA . T T C T A C CCCAGTGAC TTC TCTTTT G CA AGTAAA TG AGGGTCCGTCCGGCC T . GTTA G G CATGTTGA T A TA A AA T G T A A G A TA CAGCTAG T C GAAC T AT G A TT TTA GAT TA C ATACC GCT T T T G C G CGAC A AAAAACGT A CGTA T A C T CTTA TA TT T AA
blockSeqs : T C . AA . . T T . TATAAAAATAT T T T C . . T . . . . . TTT A GGA . T . T GAATCCATAACTC A C G . . . C A T A C . . . A CC CGAT TG ATATGTCAATCGC T . ATTA G G CGTGTTGT A . TG A GA A G . T A T T T TTGG . . . C AA . . T T AAA C . . . . C . . . . . . TACAACT . . . A . C . . . C .
blockSeqs : . C . AT . . T . . TGAATTAT T C T T . . C . . . . . . A ATG . A . T GAATCCAGAATTC T T G . . . C G T A T . . . G GC GAT G ATGTCCATCGC T . A A G . A . TG A AA A G . A A T . T TATG . . . T AA . . A T AAA T . . . . . . . . . . . T . . . . . C . . . T .
blockSeqs : . . T . . G . . CAACTTT T T T T . . A . . . . . . G GGG . T . T GAATCCAGAATTC A C G . . . C C T . C . . . . . G T ATCAATTGGC T . G G C . TA T . A . . T G T . T CCT . . . C AA . . . T GGA T . . . . . . . . . . . T . . . . . C . . . T .
blockSeqs : . . T . . TAAATT G T . G . . T . . . . . . A G . C . T ATTC A C A . . . C G . . . . CGC . . . . . A A T . C CAG . . . C A . . . C GA G . . . . . . . . . . . T . . . . . T . . . A .
blockSeqs : . G . AATT G . . T . . C . . . . . . A G . A . G GAAT . . G . . . . . . . A . T . C AAG . . . C A . . . . AG A . . . . . . . . . . . G . . . . . C . . . C .
blockSeqs : C . . G . . . . . A G . T . . G . . T . . . . . . . . A . . . . . A . . . . TA G . . . . . . . . . . . T . . . . . C . . . T .
blockSeqs : . . G . A . . . . . . . . . . . . . . . . . . . . . . T . . . . . C . . . C .
blockSeqs : . . . . . . . . . . . T . . . . . C . . . T .
blockSeqs : . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** TAAATTT***************** ************************* *** ************************ *** ******* A* G******* CC* GGT****** TG ATGTCAATCGC******** ***** GA** TG AA
originalCons : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT-TC-TACTTTAAATATGTATGTTTTCCTTT---------A----AAT-AT---TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATAC-ATTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCAC---GAT---CTTTGCATA---TCCGT---TCGGC-CCACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
finalCons : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--C-TACTTTAAATATGTATGTTTTCCTTTAAATTT-----------------TTTTTCTCACTTGGTCCGGATTAA-GGGC-ACATCT----TTGAG---------CCCT-------------------------GACAA---TATTCTCTGCAGTATAAAA------------------------GACACGTTCACTGGGAA---CGAAAGTGAACT-G-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TC-------AATTGTCCAGAATGGAAGA--A-------GTT-CTCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCACGGT------CTTTGCATATGTCAATCGC--------CACGCTAGATTTGTT-----GCTCGA--TGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCAATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA
Alignments
lowQualScore : 11 111 33333333333333333333333 22222222222222 222 2222 222222222222 66666666666666666666666666666 1111111 333333333 111 222222 33333333 111 3333333333 1111 11111 2222 22222222 1 4444444 111 11 111 111 11111 11111111111111
lowQualScore : 7 0 5 11 22 6 000 0 0 1 77 5 5 3 1 99999999999999999999999 111 1 1 5 5 2 11111111111111 5 99 333 1 8888 222222222222 1 9999 6 11111111111111111111111111111 4 1 66 5 6666666 6 3 1 99 3 222222222 444 333333 22222222 333 3333333333 55 6666 7 99 6 1 66666 6666 1 0 2 0 22222222 1 8 6 1 99 1 3 5 7 5 3 0 66 3333333 00 5 5 9999 3 555 4 4 55 222 000 99 4 00000 666 3 7 3 3 3 3 7777 3 55555555555555 3 7777 3 6 3 1 7777 44 55 2 55
lowQualScore : . . . .. .. . ... . . . .. . . . . ....................... ... . . . . . .............. . .. ... . .... ............ . .... . ............................. . . .. . ....... . . . .. . ......... ... ...... ........ ... .......... .. .... . .. . . ..... .... . . . . ........ . . . . .. . . . . . . . .. ....... .. . . .... . ... . . .. ... ... .. . ..... ... . . . . . . .... . .............. . .... . . . . .... .. .. . ..
lowQualScore : 3 8 0 00 22 7 000 7 3 3 99 7 7 6 4 33333333333333333333333 999 4 1 0 0 2 66666666666666 7 44 333 7 0000 888888888888 0 4444 4 11111111111111111111111111111 5 4 99 0 2222222 5 0 4 88 7 000000000 000 000000 44444444 000 6666666666 77 8888 3 22 7 7 77777 7777 0 2 5 8 88888888 0 0 4 0 22 0 2 7 7 1 1 0 11 8888888 44 0 0 4444 7 999 4 4 00 333 999 88 0 00000 444 6 3 6 6 6 6 7777 6 55555555555555 3 1111 3 7 3 0 1111 66 55 1 55
consensus : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--CTAC-T-TTAAATATGTATGTTTTCCTTT----AA---------ATT-T---TTTTTCTCACTTGGTCCGGATTAA-GGG-CACATCT----T---------TGAGCCCTGACAATATTCCCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCACGG---T---CTTTGCATAT--G-TCCGTC--GCC-ACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCGATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
Reference ( family-1792 ) : GAAATATTTTTTTTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--CTAC-T-TTAAATATGTATGTTTTCCTTT----AA---------ATT-T---TTTTTCTCACTTGGTCCGGATTAA-GGG-CACATCT----T---------TGAGCCCTGACAATATTCTCTGCA-GTATAAAAGACACGTTCACTGGGAA---CGAAAGTGAACTG-G-TGCAAAGCATTAATCTCG------------CTNAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAAT-------TCA-------ATTGTCCAGAATGGAAGA--AGTT-C-------TCACTGGNAATACA-TTTTTAAAGATGCACTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTCC-GGTCACGG---T---CTTTGCATAT--G-TCAATC--GCC-ACGCTAGATTTGTT-----GCTCG--ATGTACGAAACATCCGCATCGCAATAAGTGCGTGTTGTGACATTTCANCT-ACTGTCATGATCAATAATTGAGAACCCGAAATGATCCCCAA-ACCAAACTTTGATGGATAAAGTAAGC-TAGTTTCATTGC-GCCGCAGC--GTATTC-A-TCTCTGT----CCGG-A-G-CCAT-TTT--GAAATT--ATGAATCN-GAAC-TAA-----AACGGACG---GTT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTA
gi|1 : AAAAACAAA--TTAATC-AGT---TTTGTTACCAT----TTACTTA-------------------T-TTAAACATG---GC-----------------------ATC-T---TT-----CAATTGGTCTGCATTAA-GGG-CATATCA----T---------TGAGCCCTGACAATATTCCCTGCAGGTAGAAAAGACA
gi|1 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaTATTCCCTGCA-GTA--GGAGACACGCTCACTGGGAATTTCGAAAGTGAACTG-GGTATAAAGCA---ATCTCA------------CTATGTT----AGGTTTTAAT--AGACATTATTTGTTT-------GAAT-------CCAGAATTGAATTGTCCACAATGGAAGA--AGTT-CACTGTTCTCATTGGCAATACAATTTTTAAAGATGTACTTTCAAGTGCGTATGT---------GAATAGG---GCAGTGA------CATACATGTATTTGTTTCCTAGTCACAGAAAT---CTTTGCATTT--G-TTTGGC--GGC-ATTTTATATCCATTTGCACGCTAG--ATGTACAAAACATCCGAATC-------------------ATATTTTGTCT-GCT------------ACTTAAGAACCCAAAATGATCCCCAA-ACCAAAAATTGATGGCTATAGGAAAC-TAGTTTCATTGC-GTTGT--C--GTAGTC-A-TCTCTGC----CTGG-AAG-CCAT-TTT--GAAATT--ATAAATCT-GAAC-CAA-----AACAGACG---ATA-CGGAT-AA-ATACAGA-CTGAT-TGAACTGAAC-C----G-CGATGCAGT-------T------TTAACGTATCATGAA-TCAAACCGTTG----TTG-AAT-TTA-CCGCG----GTATA--Cgggttattccctgcagtagaaaaacagggttattccctgcagtaggagacacgctcactgggaatttcgaaagtgaactgggtataaagcaatctcactatgttaggttttaatagacattatttgtttgaatccagaattgaattgtccacaatggaagaagttcactgttctcattggcaatacaatttttaaagatgtactttcaagtgcgtatgtgaatagggcagtgacatacatgtatttgtttcctagtcacagaaatctttgcatttgtttggcggcattttatatccatttgcacgctagatgtacaaaacatccgaatcatattttgtctgctacttaagaacccaaaatgatccccaaaccaaaaattgatggctataggaaactagtttcattgcgttgtcgtagtcatctctgcctggaagccattttgaaattataaatctgaaccaaaacagacgatacggataaatacagactgattgaactgaaccgcgatgcagttttaacgtatcatgaatcaaaccgttgttgaatttaccgcggtatac
gi|10 : actattagggatgcaacaatacacagacctcacgatacataacacgatatttagctcacgatacattgaatcaatatagaattatctgacagaaataaaaaaaaaaaaaacaaattaatcagttttgttaccatttacttatttaaacatggcatctttcaattggtctgcattaagggcatatcattgagccctgacaatattccctgcaggtagaaaagacagggttattccctgcagtagaaaaacagggtGATGGCTAAAGGAGGAATATTTTCATTGT-GCTG-------TGTT--A-TCTCTCTGAACCTGA-A-G-CCTT-TTT--GAAATTTAATGATTCTAGAAC-TAA-----AGCGTCCA---ATTTCGGGTTAA-ATACAGAGCTGATCTGAACCAAACGT----G-AGATGCAGA-------T-------CAACATATCATGAAATTGAACGGGGG----TTA-AAT-TTA-T-GCG----GTATA--CTG--TATCGTGGTT--TATCA-TACTCTCCTA
gi|11 : AAAATTTGTTAAATAAAGTTGGC-TAGTTTCAATGT-GTTGC--C--TTATTC-A-TCTCTGT----CCGG-ATA-TCAT-TTT--GAA----------TCC-GAAT-TAT-----A-TGGACG---ATT-CAGAT-AA-ATACGGA-TCGGT-TGAACCGAAC-T----G-CAACACAGT-------T------TCAACAT-------------ACCGTGG----TTG-AAT-TTA-C-------------------------TGATT--TATCGTTCCACTCCTAg
gi|12 : GATGGCTAAGG-AGGA-TATTTTCATTGT-GCTGTTG---GTAA-C-T-TCTCTGC----CTGG-AAG-CCTT-TTTTTGAAAT---ATGA-TCT-GAACCTAA-----AGCG--TC---ATT-TGGTT-AA-ATACG-A-CTGAT-TGAACC-AAC-T----GAGGATGCAGA-------T------T-AACCTAT-ATGAA-TTGAA-CGGGG----TT--AAT-TTA-CTGC-----GTATA--Cat
gi|13 : attaaTCTGT------GA-A-G-TCAT-TTTT-GCAAT---AT-AGTTT------TAA-----AGC---CA---GTT-TAAAT-TG-ATGCAAA-CCAAA-AATACTGAAC-C----A-CAGTATAGT-------G------TAAA-GTATAGTGAG-TCAAACTGTA-----TCGTAATATTA-CCATG----ATATATACCG--TCTCACGGTT--AGTTGTTGCACCCTT
gi|14 : AAAAGATACCTTCACTGGGAA----GAAAGTGAACTG-AATGCAAGGCACTGATCTCGATCTTGATCTTGCTAAGTA----AGGTTTTGATACAGACATTATTTGTTTGAATCCAGAAT-------TCA-------ATTGACCACAATCGAAGA--AGTT-C-------TCATTGGCAATAtattgaaa
gi|15 : AAC-TAA-----AACGGACG---ATT-CCGAT-AG-ATTCGGA-CTGAT-TGAACCGTAC-C----G-CGATGCAGT-------T------TCAGTGTATCGTGAA-TTGAACTGTGG----TTG-AAT-TTA-CCGCG----GTATA--CTG--TCTCATGGTT--TATCGTTGCACTCCTA
gi|16 : aACGGACG---GTT-CGGAT-AA-ATACGAA-CCGAT-TGAACCGAAC-C----G-CGATGCAGT-------TACAACTTCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----CTATA--CCG--TCTCATGGTA--TATCGTTGCATTCCT
gi|17 : TATCGTAAA-TTGAACTGTAG----CAC-AATATTA-CTGTG----ATAT----CA--TTTCAATATT--AATTGTTGCAC
gi|2 : tgattcatggtatagtgtaaatGAAATATTTTTTTTTAAAA--CTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATAT--CTAC-C-TTAAATATGTATGTTTTCC-TT----AA-----------T-T---TTTTTCTATCTTGGTTTGGATTAA-GGG-CACATCT----TTGAGGCCTGTGAGCCCTGACAATATTATCTGCA-GTAT-AAATACATGTTCACTGGGAA---CAAAAGTGAACT--G-TGCAAAGCATTAATCTCG------------CTTAGTT----GGATATTAATTCAGACAATATTTGTTT-------G------------A-------ATTGT-CAGAATG---GA--AGTT-C-------TCACTGGAAATACA-TTTTTAAAGATGCGGTTTCAAGCGctttatgtggattagaattc
gi|2 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactACCTGAAATGATCCCCAA-ACCAAACTTTGTTAAATGAAGTAAGC-TAGTTTCATAGC-GCCGCAG----TATTC-A-TCTCTGT----CCGG-A-GGCCAT-TTT--GAAATT--ATAAATTG-GAAC-TAA-----AACGGACG---GTT-TGGAT-AA-ATACGGA-CCGAT-TGAACCGAAT-CCGACG-CGATGCAGT-------T------TTAACGTATCGTGAA-TCGAACCGTGG----TTG-TAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTT--TATCGTTGCACTCCTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctgaaatgatccccaaaccaaactttgttaaatgaagtaagctagtttcatagcgccgcagtattcatctctgtccggaggccattttgaaattataaattggaactaaaacggacggtttggataaatacggaccgattgaaccgaatccgacgcgatgcagttttaacgtatcgtgaatcgaaccgtggttgtatttaccgcggtataccgtctcacggtttatcgttgcactcctaat
gi|20 : ggttcgatacgtatcatgatacattgctgtacgtgtatcaatactgaaatatttttttttaaaactgttattaagttttgttaccatcgatttatttaaacattgcatatctaccttaaatatgtatgttttccttaatttttttctatcttggtttggattaagggcacatctttgaggcctgtgagccctgacaatattatctgcagtataaatacatgttcactgggaacaaaagtgaactgtgcaaagcattaatctcgcttagttggatattaattcagacaatatttgtttgaattgtcagaatggaagttctcactggaaatacatttttaaagatgcggtttcaagcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTGTGACATTTTATCT-ACTATGATGATCAATATTCGAGAACCCAAAATGATCCCCAA-ACCAAACat
gi|21 : tgaa---T---CTTTGCATATATG-TCAATC--GCC-ACTCTAGATTTGTT-----GCTCGTTATGTACGAAACA
gi|22 : tcacataaaACACATTCACTGGAAGTTTCAAAAGTGAACTG-GATACAAAGCATTAATCTCA------------CTAAGTT----
gi|23 : ACTTGGTCCGGATTAA-GGG-CATATCTTAACT---------TGAGCTCT
gi|3 : GAAATTTTTTTTTTTAAAAAC-TG--TT-TTA-AGT---TTTGTTACCATCGATTTATTTAAACATTGCATATATCTAC-T-TTAGATATGTATGTTTTCCTTT----AA---------ATT-T---TTTC-CTCACTTGGTTTGGATTAA-GGG-CACATCT----T---------TGAGCCCTGACAATATTCTCTGCA-GTATAAAAAGCACGTTCACTGGGAA---CGAAAGTGGACTG---TGCATAGCATTAATCTCG------------TTTAGTT----GGATTTTGATTCAGACATTATT--------------AT-------TCA--------TTGTC--GAATGGAAGATAAGTTTC-------TCA--GGGAA-AC--TTTTTAAAGATGCATTATCAAGCGCGTCTGC---------AATTGGG---ACAGTTA------CATG-------TTGTTTCA-AGTCACGA---T---CTT-GCATAG--GGTCCGTCCGGCCCACGCTAGATTTGTT-----GCTC---ATGTACGAAACATCCGCATCGCAATAAGTGCATGTTGAGACATTTCAACT-ATTGTCATGATCGATAATTGAGAACCTGAAATGATCCCCAA-ACCAAACTTTGATGAATAAAGTAAGC-TAGTTTCATTGC-GCCACAGCTAGTATTC-A-TCTCTGT----C----------AT-TTT--GAAATT--ATAAATCA-GAAC-TAA-----AACGGACG---ATT-CGGAT-AA-ATACGGA-CCGAT-TGAACCGAAC-C----G-CGGTGCAGT-------T------TCAACGTATCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCATCGTT--TATCGTTGCACTCCTAagc
gi|4 : T---TTTGTTACCATCGATTTATTTAAACATTGGATAT--CTAT-T-TCAAATATGTATGTTTTCCTTC----AA---------CTT-T---TTTCTCTCACTTGGTTTGGATTAA-GGG-CAAATCT----T---------TGAGCCCTGACAATATTGTCTGCA-GTATAAAAGACACGTTTGCTGGGAA---CAAAAATGAACT--G-TGCAAAGCATTTATCTCG------------CTCAGTT----GGATTTTGATTCAGACATTATTTGTTT-------GAATCCATAACTCA-------TTTGT-CAGAATGGAAGA--AGTT-C-------TCACT-GCAATACA-TTTGTAAAGATGTACTTTAAAGCGGGTCTGC---------AAACAGG---ACAGTGA------CATA-------TTGTTTCC-GGTCACAG---TAAAGTTTGCATAT--G-TCCATC--GCC-ACGCTAGATTTGTT-----GCTCG---T----------TCCGCATCGCAATAAGTG--------------TCAACTAATTGTCATGATCAATAACTGAGAACCTGAAATGACCCCCAATATCAAACTTTG-TGAAT-AAGTAAGC-TAGTTTCATTGTAGCCTAAG----------A-TCTCTGT----CCGGAA-G-TCAT-TTT--GAAATT--ATGGATCG-AAAC-TAA-----AACGGACG---GTA-CGGAT-AA-ATACGGA-CCGAT-TAAACCGAAC-C----G-CAATGCAGT-------T------TCAACGTGTCGTGAA-TCGAACCGTGG----TTG-AAT-TTA-CCGCG----GTATA--CCG--TCTCACGGTA--TATCGTTGCACTCCTA
gi|5 : TTAAAAACCTAAATTAATATAATCAGTTTGTTACCATTTATTT--TTAATTATGGTATAT--CTAC-T-TTAGATAT--ATGTTTTCCTTT----GA---------ATTAT---TTTTTCTCACTTGGTGCGGATTAA-GGG-TATATCT----T---------TGAGCCCTAACGATATCCCCTACA-ATAGAGAAGACACGTTCACTGGGA------AAAATGAACTATG-TACAAAGCATTAATCTTG------------CTAAGTT----GAATTTTA----AGAC---ATTTGTTTGAATCCAGAAT-------TCA-------ATTGTTCAAAATGGAAGT--AGTT-C-------TCACTG
gi|6 : ttagggctgcaacgatacactgacctcatgatacgatgcgtaccacattattcagcgtcacggatagcgaacgtcgatcacaacattgtacatgttatcaaatatagaaatatcagaaattttgagagaGAAATATTTT--TTTAAAAACCTG--TTATTA-AGT---TTTGTTACCATCGATTTATTTAAACAGTGCATAT--CTAC-T-TTAAATATGTATGTTTTCCTTTATAAAA---------A--------TATTGTCACTT-ATTTGGATTAG-GGGTTACATCT----T---------TGAGCCCCGACATTATTCTCTGCA-GTAT-AAAGGCACGTTCACTGGGAA---CAAAAGTGAACT--G-TGCAAAGCATTAAGCTCA------------CTTAGTT----GGATTTTGATTCAGACATTATTTGTTC-------GAA----------------------TCCAGAATGGAAGA--AGTT-C-------TCACTGTGAATATA-TTTTTAAAGATGCTCTTTCAAGCGCGTCTGC---------AAATAGG---ACAGTGA------CATG-------TTGTTTGC-ACTCACCG-------------------A-TCCATC--GCC-ACGCTAGAT------------------TATACGAAACATCC
gi|7 : AGNAGACACATTCACTGAAAATTTCAAAAGTGAACTG-GGTACAAAGCATTAATCTCA------------CTAAGTTTAAGAGGTTTTAATGCAGACATTATTTCTTT-------GAATCCAGAATTCA-------ATTGTCCATAATGGTAGA--AGTT-C-------TCA---------------------ATG-ACTTTCAAACGCGTATGCCCCAGTGACATATAAATTCACAGAAATCTTTTCAT--------TTGTTT---GGTGGCG---------TTT-CATAT-----CAATT--GGC-ATGCTAGGTTTGTT-----GCTCATTATGTACAAAACATCCGTATCGCAATGAGTGCGTGTTGTGACATTTCACCA-GCTATCTTGATC--TGATT-------CAAAATGATCCCCAA-ACCTAAATTTGATGG
gi|8 : aagAAATTATCCCCAA-ACCAAACTTTG-TGAAT-AAGTAAGCTTAGTTT-ATTGA-GGCCTA-T--GTATTCTACTCTCTGT----CCGGAA-G-CCATATTTA-GAAATC--ATT-ATC--GAAC-GAAATACCAACGGACGGCTGTT-CGGATCAATATACGAA-GCGA--TGAACCGAAC-C----G-CGATGCATTAAAAACGT------TCAACGTG-CGTGAA-TCGAACAGTGGCGTATCG-AAT-TTACCCGCGCTTATTATA--CCGTTTCTCATGGGTAATATC--TGCATTCCTctttagtcattcatcatcagttgaagatccacctctg
gi|9 : TA-AGT---TT-GTTATATTCTATTCAATTAAACATGACATAT--TTATATATTAAATGTGCATGTTTTCCTTT----AATTGATAGAAATA-TAAATGTTTC-CACTTGGTCCGGATTAATGAG-CAGATCT----T---------TGAGCCTTGACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGATTCATGGTATAGTGTAAATTATCGTAAATTGAACTGTAGCACAATATTACTGTGATATCATTAATTGTTGCACCTTTATGTGGATTAGAATTC
Unaligned ( gi|19 ): ATTAGGGCTGTAACAATACACTGACCTCACAATACATCAGGCATATAGTTAACTAATGTTACACACAACAATA