lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 44444444444 11111 1111 00000000000000000000000000000000000000000000000000000 1 1 1 11 111 333333333333 222222222222 1 111 11 1111 1 11 22 33333333 1 7777777777777 11111111 111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 22 11 1 4444444444444444 111 1111 1111 1 111 11 1 1 555555555555555555 1 666666666666666666 7777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 4 8 7 3 777 66666666666 2 8 22222 4444 11111111111111111111111111111111111111111111111111111 0 0 8 1 1 8 7 3 00 2 6 111 6 888888888888 222222222222 5 88888 3 1 111 6 2 11 4444 0 55555 6 33 0 2 3 99999 0 9 11 5 5 66 7 11111111 5 0 5555555555555 66 9999 777 4 4 99 4 5 4 66 66 88888888 3 4 777 4 444444444 5 6 5 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222 55 4 55 1 9999 5 4 55 4 4 777 4 11 4 4 3 3333333333333333 0 5 3 444 6 6 9999 888888 2222 5 2222 3 0 666 33 2 0 0 000000000000000000 0 3 000000000000000000 3 7777777777777777777777777777777777777777777777777777777777777777777777777777 00
lowQualScore : . . . . ... ........... . . ..... .... ..................................................... . . . . . . . . .. . . ... . ............ ............ . ..... . . ... . . .. .... . ..... . .. . . . ..... . . .. . . .. . ........ . . ............. .. .... ... . . .. . . . .. .. ........ . . ... . ......... . . . . . .............................................................................. .. . .. . .... . . .. . . ... . .. . . . ................ . . . ... . . .... ...... .... . .... . . ... .. . . . .................. . . .................. . ............................................................................ ..
lowQualScore : 7 3 3 2 555 88888888888 5 2 22222 6666 22222222222222222222222222222222222222222222222222222 8 8 2 8 8 2 8 7 77 2 7 777 7 888888888888 888888888888 0 55555 2 7 777 7 2 88 5555 8 88888 0 88 2 8 0 66666 7 3 66 0 0 99 9 22222222 0 5 2222222222222 11 9999 000 0 0 66 4 4 4 11 99 11111111 6 4 888 4 444444444 0 5 0 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555 55 0 55 6 9999 5 0 55 0 0 000 0 88 4 4 3 1111111111111111 7 7 6 000 7 7 2222 666666 1111 7 1111 2 0 222 88 5 0 0 888888888888888888 0 2 000000000000000000 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 88
consensus : GCCAAGGTANAAATATTGTTTGTTTCCCCTC---GCCGGA-CGA----GTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTT--TATT-C---GTCA-TTTCGGCAAAGTCTTT----T---TTTTTAA--TC-CGGAAAATTTCCGGTGCTAGATCAGTATTTN-ATANTGA-CCGGA---AGT-TT-----CAAT-A-TTT-C---GTT-TN-TTTT-GATCTAAAATCAAGAAATA---ATACGAA-AAGAGATGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGGTCTGGAAGGAACGGAATTTA-CAAT-GTTT-TATT--TCA-----G--ACTCGTA-TGTTTAGACAATGAGCT-G--TGCGT---TTT--GCACCAGGCTTC-G-CCCCTGC---TGT-G-GACCGA-ANTGGCCACGAG-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----G-CGAAAA-TCCAAA-TC-ACG----------AT-C-C-ATC-----TGC----AA------A--------CTACA-AAT--AT-AC-------AC-CGAA--TGG-ACAAAA--ACCTAG-AC-GGACAA-ATAG-G-A-CTGA---T-TGCTAT-A-TG-TTTT--CAA-TG--GTCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATT-TTCG-ACAT----GT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T-T--AA----TTAAA-TTCTGCTGGCAC----AAAAAAACAA----AAAAAANATTCCT-------AACCTTT----TTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( gi|1 ) : GCCAAAATAAATATATTGTTTGTTTCCCCTC---GCC----CGA----GTCTAAGAAAGTCCTGCCAACCCAAAAAT--TTT--TG---A---GTCA-TTTTGGCGAAGTTTTT----T---TTTTTGA--TC-GGGAAAATGTCCAGAGCGAGGTCAGTATTTT-ATATTGA-CCAGA---AGT-TT-----CAGT-A-TTT-T---ATT-TT-TTTTGGATCCAAATTCAAGAAATA---ATACAAA-AAGAGGTGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGATCTGGAAGGAATGGAATTTT-CAAT-GTTT-TATT--TTA-----C--ACTCGTA-TGATTAGACAATGAGCTAGCTTGCAT--ATTT--GCACCAGGCTTT-G-CCCCTGC---TGT-G-GACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----G-CAAAAA-TTCAAA-TC-ACA----------AT-C-----C-----TGC----AA------G--------CTA-A-AGT--AT-AC-------ACTTTAA--TGG-ACAAAA--ACCAAG-AC-AGACAA-ATA--G-A-CTGA---T-TGCTGT-A-TG-TTTA--CAA-TG--ATCAATCCTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATT-TCTG-ACAT----GT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T-T--AA----TTAAA-TTCTGCTGGCACC---AAAAAAAAAA----AAAAAAAA------------AACCTTT----TTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|3 : GCCAAAATATAAATATTGTTTGTTTCCCCTC---GCCGAACCAA----GTCTGAGAAAGTCCCAGCGACCCAAAACT--TTT--TATTCC---GTTA-TGTTGGCAAAGTTTTTATTTT---TTTTTAAT-TC-TAG--AATTTTCAGAAC-AGCTCGGAA--GA-AAACTGA-CCAGG---AGTGTT-----CA-T-C-TTTGT---GTT-GG-TTTT-GATCT--ATT--AGAG----------GAA-AAGAGATGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGAC
gi|4 : cagGCCAAGGTAGAAATATTGTT-ATTTCCCCTC---ACC----TGACCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTT--TGTTTC---GTCA-TTTTCACAAAG----------AAATTTGTAAGTTC-AGGAAA-TTTCCCGTGCCAGATCAGTATTTA-ATAAAGA-TCAGA---AGT-TT-------------TT-C---ATA-TA-CTT-----CTAAAATCAAGAAATATTAATACGAA-AAGCGTTGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|5 : gAAATAT-TTGCTTGTTTCCCCTCCTAGAC----TGA----GT----GAAAATACCACCGATTCAAAAGG--TTTCATT---C---GTCATTTTTGACAAA--CTTT----G---TTTTTAA--TCTTGGAAAAT-TCCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT-----CTAT-ACTTT-C---ATT-GG-TTTT-GATCTAAAATCAAGAAATA---TTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAACaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|11 : gagccaattgttaaTTTGTTTCCCCTT---GCCAGAACGA----GTCTGAGTAAGCCCCCCTGACCCAACAGT--TTT--TA---A----TCA-----------GTC-----------------A--TC-TGGAAAATATCTGGTGCTAGATCAATATTTT-TTAACGA-CTGGA---AGT-TC-----CAAT-G-TTT-TTTAGTTATT-TTTTGGTTTCG---TC--GATATA---ATACAAA-AAGAGATGGTTTGCTATATCGACAT-TGAGAAATGTCGTTCAacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|12 : AAGTCCCAATGACCCAAAAGT--TTT--TA---AACAGTCA-GTTCAGCAA--TTTTT----T---TTTTTAA--TC-CAGAAAATTTCCGGTGCTGGATTAATATTCA-GTATTGA-CCAGA---AGT-TT-----CAAT-A-TTT-T---CGT-TC-GTTTCAATCTAAAATCAAGAAGTA---ATACGAA-AAGAGATGA-TTGCTAGATTGACAT-GGAGAAAGAT--TCAAC-GGAT
gi|2 : TCA-TATTTT-ATATTGAACCAGAGACAGT-TTACTCCCATTCA-TTT-T---ATT-TTTTTTTGGATCCAAATTCAAGAAATA---ATACAAA-AAGA-GTGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|7 : ATCTTGTCAAATCAGTCTGGAAGGAA-GGAATTCA-CAAT-TCTT-TATT--TCA-----G--ATCTGAA-TGTTTAGACAATGAGCT----TGCG---ATTT--GCACCAAGCTTC-GTCCCCTAC---TAT-A-GACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----G-C-AAAA-TTCAAA-TC-ACG----------TT-CCCCATC-----TGT----AA------AAGAT----CTACA-AAT--AT-ATG------ACACGAA--TGG-AC-AAA--ACCTAG-TT-AGACAATAT---G-A-CTGA---T-TGCTAT-A-TG-TTT---CA------ATTGGTCCTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATT-TTCA-ACAT----GT-C----TGcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : ATCTTGCCAAATCGGTCTGGAAGAAACAGACTTTA-CAAT-GTTT-TACT--TTA--------ACTTGTA-TGATTAAGCAATG----AGCTTGTGT---TTT--GCATGTGGTTTT-G-CCCCTGC---TGT-A-GTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AACATAT-----G-CGAAAA-TCTGAA-TG-ACG----------AT-CTCGATT-----TGT----AA------T--------CTA-A-A---------------------AA---GG-ACTAAA--ACCTAA-AT-GGAT-A-ATAG-G-A-CTGA---T-TGC--T-A-TG-TTTT--C----G--ATTGGTCCTTCAT-TAAAAGTGACCat
gi|5 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaATCTTGCAAAATCAATTTGGAAGAAATTGAATTT----ATAGTTT-CATT--TCA-----G--ACTTGGAACGTTTAGAAAATGAGTT----TGAGT---TCT--GCACCAGACTTA-G-GCCCTGC---TGTTG-GACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-ga
gi|17 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcATCTTGCTAAATC--------AGGAATGAAATTTA-CAAT-TTAT-TATT--TCA-----A--ATTTATA-TGTTTTGGCAAAGA-------TG-------TT--GCACCAGCTTTT-C-CCTTTCC---TTT-G-GACCAA-ATTAACCACGAG-AT--CG
gi|2 : CCTGC-AAATTGATGTG-AAGGAA-GGAATTTTTCAAT-GTTAATATTCTTTA-----C--ACTCGT--TGATTAGACAATGAGC-AGCT-GAAT--TTTTTTGCACCAGGCTTTTG-CC--TGC---TGT-G-GACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA---TCAAAGTT-ACA----------AT-T-----CGC---TGC----AA------G--------CTA-A-AGT--AT-AC-------ACTTGAA--TGGAACAAAA--ACC-AG-AC-AGACAA-ATA--G-A-CTGA---TCTGCTGTCA-TGTTTTA--CAA-TGGAATCAAT-CTTCAT-AAAAAATGAC--ACA-GA-CTACACCATTATCTG-ACAT----GT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT---A---T--AA----T--AA-TTC-GCTGGCACCAAAAAAAAAAAAA----AAAAAAAA------------AACCTTT----TAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAA
gi|16 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcataTGCCAAATCAGTATGGAAGGAACAGAATTTA-CAAT-GTTT-TACT--TCAGAGTTCAGACTCGCA-TCTATAGAGCATGAGCTG---TGT-----TTT--GCACCAGGCTTT-T-CCCCTGC---TGT-G-GACaat
gi|8 : tttCCAAACTGGGCTGGAAGGACTGAAATTTA-TAAT-GAGT-TAAT--C-A-----G--ACTCGTA-TGTTTAGACAATGAGCT----TGCAT---TTT--GCACCAGGCTTC-A-CCCCTGC---TGT-G-GAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----T-CGAAAA-TCTAAA-TC-ACG----------ATGC-----CAATT-TGT----AA------AAAAAAAATCTACA-AATGAATGAC-------A--TGAT--TGG-ACAAAATTATT--G-TC-AGAC-A-ATAG-G-A-CAGA---C-TGCTTT-C-TG-TTTT--CA
gi|4 : atcaATTTA-CAAT-GTTT-TATC--TAA-----G--ACTTGTA-TGTTTAGACAATAAGCTTGTGTGC-------T--GCACCAAGCTTT-A-TCCCTGC---TGT-G-GATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----G-CGAAAA-TTACAA-TCTAGAATTTTTTTTTAT-T-----T-----TAC----AAAG----A--------TTA-A-ATT--AT-G-----------TGAA--TGC-ATAAAA--ACCTAA-AC-AGAT-G-ATAG-G-A-CGGA---T-
gi|9 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacTTGTATTGATTA--CCACAAGGCTTA-A-ATCTTGCAGCTGT-G-GACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----G-CGAAAA-TCCAAA-TC-ATG----------AT-CCCAATC-----TCCAGAAAA------A--------CTACA-AAT--AT-ACG------ACGGGGA--TGG-ACAAAA--AACTAG-TT-GTAC-A-ATAG-G-A-CTGA---T-TGCCAT-ACTGTTTTT--CA------GTCGGTCCTT-AT-TAATAATGACTGGCTGGACCTTT-CCATT-TTCG-ACAT----GT-C----TGTA
gi|6 : actCCTTAC---T-T-GTGACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAG-TGAAAA-TCCACA-TC-ATG----------AT-C-----C-------C----A----------------TTA-ATAGC--AA-CC-------AC---AACATGG-ACAAAA--ACCTAGTATTGGACAA-ATACTA-A-GTGACTCT-TGCTCT-A-AG-TTTATTCAA-T----TTGGCCCTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATT-TTCGCACA-----GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT---AAT-T--GA----ATAAAGTTCTGCTGACACA---AAAAAAACCACCCCAAAAAACATTTCTCACCACTAACCTTT----T--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|14 : tcgctC-TTGCCATA-AAC--GT-----G-CAAAAAATTCAAA-TC-CTG----------AT-C-----CGTATCTGT----AAAAGGATG---------TACA-AAT--AT-ACCAACACAACACAAA--GGG-ACAAAA--ACCTAG-AT-GGAC-A-GTAG-G-A-CTAA---T-TGC--T-A-TG-ATTT--CAACTG--GTC
gi|15 : gAA--TGA-AAAAAA--ATTTAG-TA-AGA-AA-ATA--GGA-CTGA---T-TGTTAT-A-TA-TTTT--CAA-T-----CGGTCCTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATT-TTCG-ACAT----GT-C----TGcttc
gi|10 : ttttgatttataatgtacaaatctaagatgcaAA--TGA-ACAAAA--ACCTAG-AC-GAGCAA--TA--G-GGCCGA---T-TGCTAT-A-TGATTTG--AAT-TG--GTTA----TTCAG-TAAAA-CG-TCTGCA--A-CT------TT-GCT--ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGA-T-T--AAATAATTAAA-TTCTGCTGGCAC------------AA----AAAAAAAATTCTT-------AACCTAA----TTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACAt
gi|13 : AC-CCTTT-TTTA-ACAT----GT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT---A-TATTGAA----TAAAA-TTCTGCTGGCAC------ACACACAA----AAAAAACA------------AACTTTTATGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 222222 111 22222222222 11 1 111 2222222222222 11111 1111 11 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111111 3333 11111111 11 11111 11 8888888888888888888888888888888888888888888888888888888888888888888 1 33333 1111 1111 11 11 222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 6666 1 88 5 7 666 2 99 111111 222 66666666666 6 00 2 0 1 1 5 1 5 1 000 5 4444444444444 44444 666 9999 5 0 5 0000 11 4 1 5 11 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 777 0 3 00 4 4 4444444 66 2 4 1111 4 4 777 9999 3 666 3 3 4 4 1 4 666 66 66666666 2 4 777 4 22 11111 1 4 4 00 7777777777777777777777777777777777777777777777777777777777777777777 3 7777 7 7777 3 3 66 4 4 55 55 4 55555 5 2 66 666 3 5 777 0000 5 0000 0 8 11 11 8 8 888888888888888888 8 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8
lowQualScore : .... . .. . . ... . .. ...... ... ........... . .. . . . . . . . . ... . ............. ..... ... .... . . . .... .. . . . .. . ............................................................................................................................ . ... . . .. . . ....... .. . . .... . . ... .... . ... . . . . . . ... .. ........ . . ... . .. ..... . . . .. ................................................................... . .... . .... . . .. . . .. .. . ..... . . .. ... . . ... .... . .... . . .. .. . . .................. . . ................................................................................................................. .
lowQualScore : 0000 0 88 2 8 777 2 22 333333 555 88888888888 7 33 2 0 7 0 7 0 7 4 000 7 7777777777777 99999 777 4444 0 6 0 1111 77 0 4 7 00 8 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 888 1 9 11 4 4 4444444 11 9 4 8888 7 4 888 5555 6 444 6 6 1 0 0 0 777 11 11111111 2 0 000 0 22 11111 9 4 4 66 4444444444444444444444444444444444444444444444444444444444444444444 6 3333 7 7777 6 6 11 0 0 11 55 0 88888 0 0 44 666 6 0 111 6666 0 6666 8 0 00 00 0 0 000000000000000000 0 8 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0
consensus : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAA--GTTTTTA-TT-C-GTCATTTT-GGCAAAGTT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAA---TAATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT----A--AA--------C-----TACAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TG-TTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-ACAT----GT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T-T--AA----TTAAA-TTCTGCTGGCA-C----AAAAAAANAAAA-------------AAAAAATT---------TAACCTTT----TTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( family-1699 ) : GCCAA--GGTANAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAA--GTTTTTA-TT-C-GTCATTTC-GGCAAAGTC----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCTAGATCAGTATTTNA-TANTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAA---TAATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAG-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGC----A--AA--------C-----TACAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TG-TTT--T-CAATGG--TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-ACAT----GT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T-T--AA----TTAAA-TTCTGCTGGCA-C----AAAAAAACAAAA-------------AAAANATTC-------CTAACCTTT----TTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|1 : GCCAA--AATAAATATATT-GTTTGTTTCCCCTCGCC----C-GAGTCTAAGAAAGTCCTGCCAACCCAAAA--ATTTTTG----A-GTCATTTT-GGCGAAGTT----TTTTTTTTTGA-TCG-GGAAAATGTCCAGAGCGAGGTCAGTATTTTA-TATTGA-CCAGA---AGT-TT----CAGT--A-TTT-T---ATT-TTTTTT--GGATCCAAATTCAAGAAA---TAATACAAAAAGAGG-TGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGA---TCTGGAAGGAATGGAATTTT-CAATGTTT-TAT-------T--TTACACTCGTA-TGATTAGACAATGAGCTAGCTTGCATATTT---GCACCAGGCTTT-G-CCCCT-GC---T-GT-GGACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCAAAAA-TTCAAATC-ACAAT--CC-----TGC----A--AG--------C-----TA-AAGT-----A-T-AC-------AC----T--TTAATGGA-CAAAAACCAAG-AC-AGACAAATA----G--ACTGAT-TGCTGT-A-TG-TTT--A-CAATGA--TCAATCCTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATTTCT-G-ACAT----GT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T-T--AA----TTAAA-TTCTGCTGGCACC----AAAAAAAAAAAA-------------AAAAAA------------AACCTTT----TTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|10 : -AATGAA-CAAAAACCTAG-AC-GAGCAA-TA----G-GGCCGAT-TGCTAT-A-TG-ATT--T-GAAT-----TGGTTATTCAG-TAAAA-CG-TCTGCA------AC----TTTGC-T-ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGA-T-T--AAATAATTAAA-TTCTGCTGGC-------------ACAAAA-------------AAAAAATTC-------TTAACCTAA----TTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACA
gi|11 : TTTGTTTCCCCTTGCCAGAAC-GAGTCTGAGTAAGCCCCCCTGACCCAACA--GTTTTTA-AT-C---------------AGTC--------------A-TCT-GGAAAATATCTGGTGCTAGATCAATATTTTT-TAACGA-CTGGA---AGT-TC----CAAT--G-TTT-TTTAGTTATTTTTT--G-GTTT--CGTC--GATA---TAATACAAAAAGAGA-TGGTTTGCTATATCGACAT-TGAGAAATGTCGT
gi|12 : AAGTCCCAATGACCCAAAA--GTTTTTA-AA-CAGTCAGTTC-AGCAA--TT----TTTTTTTTTAA-TCC-AGAAAATTTCCGGTGCTGGATTAATATTCAG-TATTGA-CCAGA---AGT-TT----CAAT--ATTTT-C---GTT-CGTTTC--A-ATCTAAAATCAAGAAG---TAATACGAAAAGAGA-TGAT-TGCTAGATTGACAT-GGAGAAAtca
gi|13 : AC-CCTTTTTT-A-ACAT----GT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT---A-TATTGAA----TAAAA-TTCTGCTGGCA-C------ACACACAAAA-------------AAAACA------------AACTTTTATGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAACgattcaacggat
gi|13 : aaAATAT--GTTTGCTTCCTCTCTCCGGA-C-Gatattgaataagatattg
gi|14 : aaacccttttttaacatgtctgtaactttgctaatggttatagagattttatatattgaataaaattctgctggcacacacacaaaaaaaacaaacttttatgcttacctaccctcctctgaaatttagC-TTGCCATA-AAC--GT-----GCAAAAAATTCAAATC-CTGAT--CCGTATCTGT----A--AA--------AGGATGTACAAAT-----A-T-ACCAACACAACA---C--A-AAGGGA-CAAAAACCTAG-AT-GGAC-AGTA----G-GACTAAT-TGC--T-A-TG-ATT--T-CAA-----CTGGTCCTTCgaataagatattg
gi|15 : g-----TACAAATCTAAGA-T-GC-------A----------AATGAA-AAAAAATTTAG-TA-AGA-AAATA----G-GACTGAT-TGTTAT-A-TA-TTT--T-CAAT-----CGGTCCTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATTTTC-G-ACAT----GT-C----TG
gi|16 : ttttgatttataatgTTTTGCCAAATCAG---TATGGAAGGAACAGAATTTA-CAATGTTT-TACTTCAGAGT--TCAGACTCGCA-TCTATAGAGCATGAGCTG---T--GT-TTT---GCACCAGGCTTT-T-CCCCT-GC---T-GT-GGACt
gi|17 : ATCTTGCTAAATC-----------AGGAATGAAATTTA-CAATTTAT-TAT-------T--TCAAATTTATA-TGTTTTGGCAA--AGATG----------TT---GCACCAGCTTTT-C-CCTTT-CC---T-TT-GGACCAA-ATTAACCACGAG-AT--CG
gi|2 : TCA-TATTTTA-TATTGAACCAGAGACAGT-TTACTCCCATTCA-TTT-T---ATT-TTTTTTTGG-ATCCAAATTCAAGAAA---TAATACAAAAAGAG--TGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|2 : CAAATTGA---TGTG-AAGGAA-GGAATTTTTCAATGTTAATAT-------TCTTTACACTCGT--TGATTAGACAATGAGCAGC--TGAAT-TTTTTTGCACCAGGCTTTTG-CC--T-GC---T-GT-GGACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA-TCAAAGTT-ACAAT--TC--G-CTGC----A--AG--------C-----TA-AAGT-----A-T-AC-------AC----TT-G-AATGGAACAAAAACC-AG-AC-AGACAAATA----G--ACTGATCTGCTGTCA-TG-TTT--TACAATGGAATCAATC-TTCAT-AAAAAATGAC--ACAG-A-CTACACCATTATCTG-ACAT----GT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT---A-T----AA----T--AA-TTC-GCTGGCA-CCAAAAAAAAAAAAAAA-------------AAAAAA------------AACCTTT----TAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAAcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgGCCAA--AATATAAATATT-GTTTGTTTCCCCTCGCCGAACC-AAGTCTGAGAAAGTCCCAGCGACCCAAAA--CTTTTTA-TTCC-GTTATGTT-GGCAAAGTTTTTATTTTTTTTTAA-TTC--TAGAATTTTCAGAAC-AGCTCGGAA--GAA-AACTGA-CCAGG---AGTGTT----C-AT--C-TTTGT---GTT-GGTTTT--G-ATCT---ATT-AGAG----------GAAAAGAGA-TGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGACaat
gi|3 : cagATCTTGCCAAATCGG---TCTGGAAGAAACAGACTTTA-CAATGTTT-TAC-------T--TTA-ACTTGTA-TGATTAAGCAATGAGCT----TGTGT-TTT---GCATGTGGTTTT-G-CCCCT-GC---T-GT-AGTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AACATAT-----GCGAAAA-TCTGAATG-ACGAT--CTCGATTTGT----A--AT--------C-----TAAAAA---------------------------------GGA-CTAAAACCTAA-AT-GGAT-AATA----G-GACTGAT-TGC--T-A-TG-TTT--T-C---GA--TTGGTCCTTCAT-TAAAAGTGACCaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|4 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaGCCAA--GGTAGAAATATT-GTT-ATTTCCCCTCACCTGA-CCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTTTGTTT-C-GTCATTTT-CACAAAGAA-------ATTTGTAAGTTC-AGGAAATTTCCCGTGCCAGATCAGTATTTAA-TAAAGA-TCAGA---AGT-T-------------TTT-C---ATA-TACT-------TCTAAAATCAAGAAATATTAATACGAAAAGCGT-TGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACga
gi|4 : gCTTGCCCAATCGGACATCTT------AC---ATTTA-CAATGTTT-TAT-------C--TAAGACTTGTA-TGTTTAGACAATAAGCT----TGTGT-GCT---GCACCAAGCTTT-A-TCCCT-GC---T-GT-GGATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----GCGAAAA-TTACAATCTAGAAT--TT--TTTTTT----A--TT--------T-----TACAAAG-----ATT-AA-------ATTATGT--G-AATGCA-TAAAAACCTAA-AC-AGAT-GATA----G-GACGGAT-accnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|5 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagGCCAATTGTTAAAAATATTTGCTTGTTTCCCCTC-CTAGA-CTGAGT----GAAAATACCACCGATTCAAAA--GGTTTCA-TT-C-GTCATTTTTGACAAA--C----TTTGTTTTTAA-TCTTGGAAAATT-CCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT----CTAT--ACTTT-C---ATT-GGTTTT--G-ATCTAAAATCAAGAAA---TATTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAAC
gi|5 : gaATCTTGCAAAATCAA---TTTGGAAGAAATTGAATTTA-TA--GTTT-CAT-------T--TCAGACTTGGAACGTTTAGAAAATGAGTT----TGAGT-TCT---GCACCAGACTTA-G-GCCCT-GC---T-GTTGGACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-acctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|6 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcTC-G-CTCCTTAC---TTGT-G-ACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAGTGAAAA-TCCACATC-ATGAT--CCC-ATTAAT----AGCAA--------C-----CACAA--------------------------C-----ATGGA-CAAAAACCTAGTATTGGACAAATACTAAGTGACTC-T-TGCTCT-A-AG-TTTATT-CAAT----TTGGCCCTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATTTTC-GCACA-----GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT---AAT-T--GA----ATAAAGTTCTGCTGACA-C----AAAA--------AAAACCACCCCAAAAAACATTTCTCACCACTAACCTTT----T--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|7 : ATCTTGTCAAATCAG---TCTGGAAGGAA-GGAATTCA-CAATTCTT-TAT-------T--TCAGATCTGAA-TGTTTAGACAATGAGCT----TGCGA-TTT---GCACCAAGCTTC-GTCCCCT-AC---T-AT-AGACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----GC-AAAA-TTCAAATC-ACGTTCCCC--ATCTGT----A--AAAGAT----C-----TACAAAT-----A-T-ATG------ACA---C--G-AATGGA-C-AAAACCTAG-TT-AGAC-AATA----T-GACTGAT-TGCTAT-A-TG--TT--T-CAA-----TTGGTCCTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATTTTC-A-ACAT----GT-C----TG
gi|8 : CCAAACTGG---GCTGGAAGGACTGAAATTTA-TAATGAGT-TAA-------T---CAGACTCGTA-TGTTTAGACAATGAGCT----TGCAT-TTT---GCACCAGGCTTC-A-CCCCT-GC---T-GT-GGAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----TCGAAAA-TCTAAATC-ACGATG-CCA-ATTTGT----A--AAAAAAAAATC-----TACAAATGA---A-TGAC-------A-----T--G-ATTGGA-CAAAATTATTG-TC-AGAC-AATA----G-GACAGAC-TGCTTT-C-TG-TTT--T-CAat
gi|9 : atcaCACAAGGCTTA-A-ATCTT-GCAGCT-GT-GGACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----GCGAAAA-TCCAAATC-ATGAT--CCCAATCTCCAGAAA--AA--------C-----TACAAAT-----A-T-AC-------GA----CGGG-GATGGA-CAAAAAACTAG-TT-GTAC-AATA----G-GACTGAT-TGCCAT-ACTGTTTT--T-CA---G--TCGGTCCTT-AT-TAATAATGACTGGCTGGACCTTT-CCATTTTC-G-ACAT----GT-C----TGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 22222 11111111111111 11 111 222222222222 11111 111 11 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111111 3333 11111111 11 11111 11 7777777777777777777777777777777777777777777777777777777777777777777 1 222222 1111 1111 11 11 4444444444444 222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 1 88 5 7 666 2 99 11111 77 99999999999999 6 00 2 7 1 1 5 0 5 1 000 5 888888888888 44444 666 99999 1 33 5 0 000 11 4 1 5 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 777 0 3 00 4 4 4444444 66 2 4 1111 4 4 777 9999 3 666 3 3 4 4 1 4 666 66 66666666 2 4 777 4 22 11111 1 4 4 00 8888888888888888888888888888888888888888888888888888888888888888888 3 7777 7 7777 3 3 66 4 4 1 55 4 666666 5 66 3 5 8888 777 0000 5 0000 0 8 11 11 8 8 0000000000000 6 8 0 8 666666666666666666 444444444444444444444444444444444444444444444444444444444444444444444444444 8
lowQualScore : .. . . .. . . ... . .. ..... .. .............. . .. . . . . . . . . ... . ............ ..... ... ..... . .. . . ... .. . . . .. ............................................................................................................................ . ... . . .. . . ....... .. . . .... . . ... .... . ... . . . . . . ... .. ........ . . ... . .. ..... . . . .. ................................................................... . .... . .... . . .. . . . .. . ...... . .. . . .... ... .... . .... . . .. .. . . ............. . . . . .................. ........................................................................... .
lowQualScore : 88 2 2 88 2 8 777 2 22 33333 77 77777777777777 7 33 2 5 7 0 7 6 7 4 000 7 111111111111 99999 777 66666 4 33 0 1 000 77 0 4 7 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 888 1 9 11 4 4 4444444 11 9 4 8888 7 4 888 5555 6 444 6 6 1 0 0 0 777 11 11111111 2 0 000 0 22 11111 9 4 4 66 2222222222222222222222222222222222222222222222222222222222222222222 6 3333 7 7777 6 6 11 0 0 1 55 0 000000 0 44 0 7 3333 111 6666 0 6666 8 0 00 00 0 0 8888888888888 0 0 8 0 888888888888888888 222222222222222222222222222222222222222222222222222222222222222222222222222 0
consensus : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT----A--AN--------C-----TACAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C----AAAAAAA--AA---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( family-1699 ) : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT----A--AA--------C-----TACAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C----AAAAAAA--NA---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|1 : GCCAA--AATAAATATATT-GTTTGTTTCCCCTCGCC----C-GAGTCTAAGAAAGTCCTGCCAACCCAAAAAT--TTTTG---A-GTCATTTT-GGCGAAG---TT----TTTTTTTTTGA-TCG-GGAAAATGTCCAGAGCGAGGTCAGTATTTTA-TATTGA-CCAGA---AGT-TT----CAGT--A-TTT-T---ATT-TTTTTT--GGATCCAAATTCAAGAAATA---ATACAAAAAGAGG-TGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGA---TCTGGAAGGAATGGAATTTT-CAATGTTT-TAT-------T--TTACACTCGTA-TGATTAGACAATGAGCTAGCTTGCATATTT---GCACCAGGCTTT-G-CCCCT-GC---T-GT-GGACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCAAAAA-TTCAAATC-ACAAT--CC-----TGC----A--AG--------C-----TA-AAGT-----A-T-AC-------AC----T--TTAATGGA-CAAAAACCAAG-AC-AGACAAATA----G--ACTGAT-TGCTGT-A-TGTTT--A-CAATGA--TCAATCCTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATTTCT-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCACC----AAAAAAA--AA---AAAAAAAAA----------------AACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|10 : -AATGAA-CAAAAACCTAG-AC-GAGCAA-TA----G-GGCCGAT-TGCTAT-A-TGATT--T-GAAT----T-GGTTATTCAG-T-AAAACG-TCTGCA--A-C-------TTTGC-T-ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGA-TTAAAT--AATTAAA-TTCTGCTGGCA-C--------------A---AAAAAAAAA--TTCT---------TAACCTAATTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACA
gi|11 : TTTGTTTCCCCTTGCCAGAAC-GAGTCTGAGTAAGCCCCCCTGACCCAACAGT--TTTTAAT-C---------------AG---TC--------------A-TCT-GGAAAATATCTGGTGCTAGATCAATATTTTT-TAACGA-CTGGA---AGT-TC----CAAT--G-TTT-TTTAGTTATTTTTT--G-GTTTCG--TC--GATATA---ATACAAAAAGAGA-TGGTTTGCTATATCGACAT-TGAGAAATGTCGT
gi|12 : AAGTCCCAATGACCCAAAAGT--TTTTAAA-CAGTCAGTTC-AGCAA-----TT----TTTTTTTTTAA-TCC-AGAAAATTTCCGGTGCTGGATTAATATTCAG-TATTGA-CCAGA---AGT-TT----CAAT--ATTTT-C---GTT-CGTTTC--A-ATCTAAAATCAAGAAGTA---ATACGAAAAGAGA-TGAT-TGCTAGATTGACAT-GGAGAAAtca
gi|13 : AC-CCTTTTTT-A-AC----ATGT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT---A-TA---TTGAATAAAA-TTCTGCTGGCA-C----ACACACA--AA---AAAAACAAACTT--T---------TA---TGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAACgattcaacggat
gi|13 : aaAATAT--GTTTGCTTCCTCTCTCCGGA-C-Gatattgaataagatattg
gi|14 : aaacccttttttaacatgtctgtaactttgctaatggttatagagattttatatattgaataaaattctgctggcacacacacaaaaaaaacaaacttttatgcttacctaccctcctctgaaatttagC-TTGCCATA-AAC--GT-----GCAAAAAATTCAAATC-CTGAT--CCGTATCTGT----A--AA--------AGGATGTACAAAT-----A-T-ACCAACACAACA---C--A-AAGGGA-CAAAAACCTAG-AT-GGAC-AGTA----G-GACTAAT-TGC--T-A-TGATT--T-CAAC----T-GGTCCTTCgaataagatattg
gi|15 : g--ATTTAT----A--AT--------G-----TACAAATCTAAGA-T-GC-------A----------AATGAA-AAAAAATTTAG-TA-AGA-AAATA----G-GACTGAT-TGTTAT-A-TATTT--T-CAAT-----CGGTCCTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATTTTC-G-AC----ATGT-C----TG
gi|16 : ttttgTTTTGCCAAATCAG---TATGGAAGGAACAGAATTTA-CAATGTTT-TACTTCAGAGT--TCAGACTCGCA-TCTATAGAGCATGAGCTG---T--GT-TTT---GCACCAGGCTTT-T-CCCCT-GC---T-GT-GGACt
gi|17 : ATCTTGCTAAATC-----------AGGAATGAAATTTA-CAATTTAT-TAT-------T--TCAAATTTATA-TGTTTTGGCAA--AGATG----------TT---GCACCAGCTTTT-C-CCTTT-CC---T-TT-GGACCAA-ATTAACCACGAG-AT--CG
gi|2 : TCA-TATTTTA-TATTGAACCAGAGACAGT-TTACTCCCATTCA-TTT-T---ATT-TTTTTTTGG-ATCCAAATTCAAGAAATA---ATACAAAAAGAG--TGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|2 : CAAATTGA---TGTG-AAGGAA-GGAATTTTTCAATGTTAATAT-------TCTTTACACTCGT--TGATTAGACAATGAGCAGC--TGAAT-TTTTTTGCACCAGGCTTTTG-CC--T-GC---T-GT-GGACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA-TCAAAGTT-ACAAT--TC--G-CTGC----A--AG--------C-----TA-AAGT-----A-T-AC-------AC----TT-G-AATGGAACAAAAACC-AG-AC-AGACAAATA----G--ACTGATCTGCTGTCA-TGTTT--TACAATGGAATCAATC-TTCAT-AAAAAATGAC--ACAG-A-CTACACCATTATCTG-AC----ATGT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT---A------T--AAT--AA-TTC-GCTGGCA-CCAAAAAAAAAA--AA---AAAAAAAAA----------------AACCTTTTAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAAcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgGCCAA--AATATAAATATT-GTTTGTTTCCCCTCGCCGAACC-AAGTCTGAGAAAGTCCCAGCGACCCAAAACT--TTTTATTCC-GTTATGTT-GGCAAAG---TTTTTATTTTTTTTTAA-TTC--TAGAATTTTCAGAAC-AGCTCGGAA--GAA-AACTGA-CCAGG---AGTGTT----C-AT--C-TTTGT---GTT-GGTTTT--G-ATCT---ATT-AGAG----------GAAAAGAGA-TGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGACaat
gi|3 : cagATCTTGCCAAATCGG---TCTGGAAGAAACAGACTTTA-CAATGTTT-TAC-------T--TTA-ACTTGTA-TGATTAAGCAATGAGCT----TGTGT-TTT---GCATGTGGTTTT-G-CCCCT-GC---T-GT-AGTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AACATAT-----GCGAAAA-TCTGAATG-ACGAT--CTCGATTTGT----A--AT--------C-----TAAAAA---------------------------------GGA-CTAAAACCTAA-AT-GGAT-AATA----G-GACTGAT-TGC--T-A-TGTTT--T-CGAT----T-GGTCCTTCAT-TAAAAGTGACCaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|4 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaGCCAA--GGTAGAAATATT-GTT-ATTTCCCCTCACCTGA-CCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTTTGTTTC-GTCATTTT-CACAAAGAAATT----TGT------AAGTTC-AGGAAATTTCCCGTGCCAGATCAGTATTTAA-TAAAGA-TCAGA---AGT-TT-------------TT-C---ATA-TACTT-------CTAAAATCAAGAAATATTAATACGAAAAGCGT-TGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACga
gi|4 : gCTTGCCCAATCGGACATCTT------AC---ATTTA-CAATGTTT-TAT-------C--TAAGACTTGTA-TGTTTAGACAATAAGCT----TGTGT-GCT---GCACCAAGCTTT-A-TCCCT-GC---T-GT-GGATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----GCGAAAA-TTACAATCTAGAAT--TT--TTTTTT----A--TT--------T-----TACAAAG-----ATT-AA-------ATTATGT--G-AATGCA-TAAAAACCTAA-AC-AGAT-GATA----G-GACGGAT-accnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|5 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagGCCAATTGTTAAAAATATTTGCTTGTTTCCCCTC-CTAGA-CTGAGT----GAAAATACCACCGATTCAAAAGG--TTTCATT-C-GTCATTTTTGACAAA-----C----TTTGTTTTTAA-TCTTGGAAAATT-CCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT----CTAT--ACTTT-C---ATT-GGTTTT--G-ATCTAAAATCAAGAAATA---TTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAAC
gi|5 : gaATCTTGCAAAATCAA---TTTGGAAGAAATTGAATTTA-TA--GTTT-CAT-------T--TCAGACTTGGAACGTTTAGAAAATGAGTT----TGAGT-TCT---GCACCAGACTTA-G-GCCCT-GC---T-GTTGGACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-acctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|6 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcTC-G-CTCCTTAC---TTGT-G-ACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAGTGAAAA-TCCACATC-ATGAT--CCC-ATTAAT----AGCAA--------C-----CACAA--------------------------C-----ATGGA-CAAAAACCTAGTATTGGACAAATACTAAGTGACTC-T-TGCTCT-A-AGTTTATT-CAAT----TTGGCCCTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATTTTC-GCAC----A-GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT---AAT----T--GAATAAAGTTCTGCTGACA-C----AAAAAAAACCACCCCAAAAAACA--T--TTCTCACCACTAACCTTTT--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|7 : ATCTTGTCAAATCAG---TCTGGAAGGAA-GGAATTCA-CAATTCTT-TAT-------T--TCAGATCTGAA-TGTTTAGACAATGAGCT----TGCGA-TTT---GCACCAAGCTTC-GTCCCCT-AC---T-AT-AGACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----GC-AAAA-TTCAAATC-ACGTTCCCC--ATCTGT----A--AAAGAT----C-----TACAAAT-----A-T-ATG------ACA---C--G-AATGGA-C-AAAACCTAG-TT-AGAC-AATA----T-GACTGAT-TGCTAT-A-TG-TT--T-CAAT----T-GGTCCTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATTTTC-A-AC----ATGT-C----TG
gi|8 : CCAAACTGG---GCTGGAAGGACTGAAATTTA-TAATGAGT-TAA-------T---CAGACTCGTA-TGTTTAGACAATGAGCT----TGCAT-TTT---GCACCAGGCTTC-A-CCCCT-GC---T-GT-GGAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----TCGAAAA-TCTAAATC-ACGATG-CCA-ATTTGT----A--AAAAAAAAATC-----TACAAATGA---A-TGAC-------A-----T--G-ATTGGA-CAAAATTATTG-TC-AGAC-AATA----G-GACAGAC-TGCTTT-C-TGTTT--T-CAat
gi|9 : atcaCACAAGGCTTA-A-ATCTT-GCAGCT-GT-GGACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----GCGAAAA-TCCAAATC-ATGAT--CCCAATCTCCAGAAA--AA--------C-----TACAAAT-----A-T-AC-------GA----CGGG-GATGGA-CAAAAAACTAG-TT-GTAC-AATA----G-GACTGAT-TGCCAT-ACTGTTT--T-TCAG----TCGGTCCTT-AT-TAATAATGACTGGCTGGACCTTT-CCATTTTC-G-AC----ATGT-C----TGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 22222 11111111111111 11 111 222222222222 11111 111 11 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111111 3333 11111111 11111 11 777777777777777777777777777777777777777777777777777777777777777777 1 222222 1111 1111 11 11 4444444444444 111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 1 88 5 7 666 2 99 11111 77 99999999999999 6 00 2 7 1 1 5 0 5 1 000 5 888888888888 44444 666 99999 1 33 5 0 000 11 4 1 5 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 777 0 3 00 4 4 4444444 66 2 4 1111 4 4 777 9999 3 666 3 3 4 4 1 4 666 66 66666666 2 4 777 4 66 77777 1 4 4 00 555555555555555555555555555555555555555555555555555555555555555555 3 7777 3 1 7777 3 3 1 666 1 55 4 666666 5 66 3 5 8888 777 0000 5 0000 0 8 11 11 8 8 0000000000000 6 8 0 8 999 0 0 666666 000000000000000000000000000000000000000000000000000000000000000000000000000 8
lowQualScore : .. . . .. . . ... . .. ..... .. .............. . .. . . . . . . . . ... . ............ ..... ... ..... . .. . . ... .. . . . .. ............................................................................................................................ . ... . . .. . . ....... .. . . .... . . ... .... . ... . . . . . . ... .. ........ . . ... . .. ..... . . . .. .................................................................. . .... . . .... . . . ... . .. . ...... . .. . . .... ... .... . .... . . .. .. . . ............. . . . . ... . . ...... ........................................................................... .
lowQualScore : 88 2 2 88 2 8 777 2 22 33333 77 77777777777777 7 33 2 5 7 0 7 6 7 4 000 7 111111111111 99999 777 66666 4 33 0 1 000 77 0 4 7 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 888 1 9 11 4 4 4444444 11 9 4 8888 7 4 888 5555 6 444 6 6 1 0 0 0 777 11 11111111 2 0 000 0 11 22222 9 4 4 66 999999999999999999999999999999999999999999999999999999999999999999 6 3333 3 3 7777 6 6 4 333 1 55 0 000000 0 44 0 7 3333 111 6666 0 6666 8 0 00 00 0 0 8888888888888 0 0 8 0 444 6 6 000000 444444444444444444444444444444444444444444444444444444444444444444444444444 0
consensus : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( family-1699 ) : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|1 : GCCAA--AATAAATATATT-GTTTGTTTCCCCTCGCC----C-GAGTCTAAGAAAGTCCTGCCAACCCAAAAAT--TTTTG---A-GTCATTTT-GGCGAAG---TT----TTTTTTTTTGA-TCG-GGAAAATGTCCAGAGCGAGGTCAGTATTTTA-TATTGA-CCAGA---AGT-TT----CAGT--A-TTT-T---ATT-TTTTTT--GGATCCAAATTCAAGAAATA---ATACAAAAAGAGG-TGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGA---TCTGGAAGGAATGGAATTTT-CAATGTTT-TAT-------T--TTACACTCGTA-TGATTAGACAATGAGCTAGCTTGCATATTT---GCACCAGGCTTT-G-CCCCT-GC---T-GT-GGACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCAAAAA-TTCAAATC-ACAAT--CC-----TGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----T--TTAATGGA-CAAAAACCAAG-AC-AGACAAATA----G--ACTGAT-TGCTGT-A-TGTTT--A-CAATGA--TCAATCCTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATTTCT-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCACC-AAAAAAAA--A---AAAAAAAAA----------------AACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|10 : -AATGAA-CAAAAACCTAG-AC-GAGCAA-TA----G-GGCCGAT-TGCTAT-A-TGATT--T-GAAT----T-GGTTATTCAG-T-AAAACG-TCTGCA--A-C-------TTTGC-T-ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGA-TTAAAT--AATTAAA-TTCTGCTGGCA-C-----------A---AAAAAAAAA--TTCT---------TAACCTAATTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACA
gi|11 : TTTGTTTCCCCTTGCCAGAAC-GAGTCTGAGTAAGCCCCCCTGACCCAACAGT--TTTTAAT-C---------------AG---TC--------------A-TCT-GGAAAATATCTGGTGCTAGATCAATATTTTT-TAACGA-CTGGA---AGT-TC----CAAT--G-TTT-TTTAGTTATTTTTT--G-GTTTCG--TC--GATATA---ATACAAAAAGAGA-TGGTTTGCTATATCGACAT-TGAGAAATGTCGT
gi|12 : AAGTCCCAATGACCCAAAAGT--TTTTAAA-CAGTCAGTTC-AGCAA-----TT----TTTTTTTTTAA-TCC-AGAAAATTTCCGGTGCTGGATTAATATTCAG-TATTGA-CCAGA---AGT-TT----CAAT--ATTTT-C---GTT-CGTTTC--A-ATCTAAAATCAAGAAGTA---ATACGAAAAGAGA-TGAT-TGCTAGATTGACAT-GGAGAAAtca
gi|13 : AC-CCTTTTTT-A-AC----ATGT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT---A-TA---TTGAATAAAA-TTCTGCTGGCA-C-ACACACAA--A---AAAAACAAACTT--T---------TA---TGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAACgattcaacggat
gi|13 : aaAATAT--GTTTGCTTCCTCTCTCCGGA-C-Gatattgaataagatattg
gi|14 : aaacccttttttaacatgtctgtaactttgctaatggttatagagattttatatattgaataaaattctgctggcacacacacaaaaaaaacaaacttttatgcttacctaccctcctctgaaatttagC-TTGCCATA-AAC--GT-----GCAAAAAATTCAAATC-CTGAT--CCGTATCTGT--------A----AAAGGATGTA-CAAAT-----A-T-ACCAACACAACA---C--A-AAGGGA-CAAAAACCTAG-AT-GGAC-AGTA----G-GACTAAT-TGC--T-A-TGATT--T-CAAC----T-GGTCCTTCgaataagatattg
gi|15 : g--ATTTAT--------A----ATG-----TA-CAAATCTAAGA-T-GC-------A----------AATGAA-AAAAAATTTAG-TA-AGA-AAATA----G-GACTGAT-TGTTAT-A-TATTT--T-CAAT-----CGGTCCTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATTTTC-G-AC----ATGT-C----TG
gi|16 : ttttgTTTTGCCAAATCAG---TATGGAAGGAACAGAATTTA-CAATGTTT-TACTTCAGAGT--TCAGACTCGCA-TCTATAGAGCATGAGCTG---T--GT-TTT---GCACCAGGCTTT-T-CCCCT-GC---T-GT-GGACt
gi|17 : ATCTTGCTAAATC-----------AGGAATGAAATTTA-CAATTTAT-TAT-------T--TCAAATTTATA-TGTTTTGGCAA--AGATG----------TT---GCACCAGCTTTT-C-CCTTT-CC---T-TT-GGACCAA-ATTAACCACGAG-AT--CG
gi|2 : TCA-TATTTTA-TATTGAACCAGAGACAGT-TTACTCCCATTCA-TTT-T---ATT-TTTTTTTGG-ATCCAAATTCAAGAAATA---ATACAAAAAGAG--TGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|2 : CAAATTGA---TGTG-AAGGAA-GGAATTTTTCAATGTTAATAT-------TCTTTACACTCGT--TGATTAGACAATGAGCAGC--TGAAT-TTTTTTGCACCAGGCTTTTG-CC--T-GC---T-GT-GGACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA-TCAAAGTT-ACAAT--TC--G-CTGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----TT-G-AATGGAACAAAAACC-AG-AC-AGACAAATA----G--ACTGATCTGCTGTCA-TGTTT--TACAATGGAATCAATC-TTCAT-AAAAAATGAC--ACAG-A-CTACACCATTATCTG-AC----ATGT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT---A-T-------AAT--AA-TTC-GCTGGCA-CCAAAAAAAA--A---AAAAAAAAA--A--A---------AAACCTTTTAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAAcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgGCCAA--AATATAAATATT-GTTTGTTTCCCCTCGCCGAACC-AAGTCTGAGAAAGTCCCAGCGACCCAAAACT--TTTTATTCC-GTTATGTT-GGCAAAG---TTTTTATTTTTTTTTAA-TTC--TAGAATTTTCAGAAC-AGCTCGGAA--GAA-AACTGA-CCAGG---AGTGTT----C-AT--C-TTTGT---GTT-GGTTTT--G-ATCT---ATT-AGAG----------GAAAAGAGA-TGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGACaat
gi|3 : cagATCTTGCCAAATCGG---TCTGGAAGAAACAGACTTTA-CAATGTTT-TAC-------T--TTA-ACTTGTA-TGATTAAGCAATGAGCT----TGTGT-TTT---GCATGTGGTTTT-G-CCCCT-GC---T-GT-AGTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--ATAT---GCGAAAA-TCTGAATG-ACGAT--CTCGATTTGT--------A----ATC-----TA-AAAA---------------------------------GGA-CTAAAACCTAA-AT-GGATAA-TA----G-GACTGAT-TGCTAT----GTTT--T-CGAT----T-GGTCCTTCAT-TAAAAGTGACCaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|4 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaGCCAA--GGTAGAAATATT-GTT-ATTTCCCCTCACCTGA-CCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTTTGTTTC-GTCATTTT-CACAAAGAAATT----TGT------AAGTTC-AGGAAATTTCCCGTGCCAGATCAGTATTTAA-TAAAGA-TCAGA---AGT-TT-------------TT-C---ATA-TACTT-------CTAAAATCAAGAAATATTAATACGAAAAGCGT-TGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACga
gi|4 : gCTTGCCCAATCGGACATCTT------AC---ATTTA-CAATGTTT-TAT-------C--TAAGACTTGTA-TGTTTAGACAATAAGCT----TGTGT-GCT---GCACCAAGCTTT-A-TCCCT-GC---T-GT-GGATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----GCGAAAA-TTACAATCTAGAAT--TT--TTTTTT--------A----TTT-----TA-CAAAG-----ATT-AA-------ATTATGT--G-AATGCA-TAAAAACCTAA-AC-AGAT-GATA----G-GACGGAT-accnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|5 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagGCCAATTGTTAAAAATATTTGCTTGTTTCCCCTC-CTAGA-CTGAGT----GAAAATACCACCGATTCAAAAGG--TTTCATT-C-GTCATTTTTGACAAA-----C----TTTGTTTTTAA-TCTTGGAAAATT-CCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT----CTAT--ACTTT-C---ATT-GGTTTT--G-ATCTAAAATCAAGAAATA---TTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAAC
gi|5 : gaATCTTGCAAAATCAA---TTTGGAAGAAATTGAATTTA-TA--GTTT-CAT-------T--TCAGACTTGGAACGTTTAGAAAATGAGTT----TGAGT-TCT---GCACCAGACTTA-G-GCCCT-GC---T-GTTGGACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-acctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|6 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcTC-G-CTCCTTAC---TTGT-G-ACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAGTGAAAA-TCCACATC-ATGAT--CCC-AT---T--------A----A-------TAGCAACC-----A-C-A--------AC----------ATGGA-CAAAAACCTAGTATTGGACAAATACTAAGTGACTC-T-TGCTCT-A-AGTTTATT-CAAT----TTGGCCCTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATTTTC-GCAC----A-GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT---AAT----T--GAATAAAGTTCTGCTGACA-C-AAAAAAAACCACCCCAAAAAACA--T--TTCTCACCACTAACCTTTT--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|7 : ATCTTGTCAAATCAG---TCTGGAAGGAA-GGAATTCA-CAATTCTT-TAT-------T--TCAGATCTGAA-TGTTTAGACAATGAGCT----TGCGA-TTT---GCACCAAGCTTC-GTCCCCT-AC---T-AT-AGACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----GC-AAAA-TTCAAATC-ACGTTCCCC--ATCTGT--------AAAAGATC-----TA-CAAAT-----A-T-ATG------ACA---C--G-AATGGA-C-AAAACCTAG-TT-AGAC-AATA----T-GACTGAT-TGCTAT-A-TG-TT--T-CAAT----T-GGTCCTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATTTTC-A-AC----ATGT-C----TG
gi|8 : CCAAACTGG---GCTGGAAGGACTGAAATTTA-TAATGAGT-TAA-------T---CAGACTCGTA-TGTTTAGACAATGAGCT----TGCAT-TTT---GCACCAGGCTTC-A-CCCCT-GC---T-GT-GGAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----TCGAAAA-TCTAAATC-ACGATG-CCA-ATTTGTAAAAAAAAA----ATC-----TA-CAAATGA---A-TGAC-------A-----T--G-ATTGGA-CAAAATTATTG-TC-AGAC-AATA----G-GACAGAC-TGCTTT-C-TGTTT--T-CAat
gi|9 : atcaCACAAGGCTTA-A-ATCTT-GCAGCT-GT-GGACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----GCGAAAA-TCCAAATC-ATGAT--CCCAATCTCCAGAA----A----AAC-----TA-CAAAT-----A-T-AC-------GA----CGGG-GATGGA-CAAAAAACTAG-TT-GTAC-AATA----G-GACTGAT-TGCCAT-ACTGTTT--T-TCAG----TCGGTCCTT-AT-TAATAATGACTGGCTGGACCTTT-CCATTTTC-G-AC----ATGT-C----TGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 22222 11111111111111 11 111 222222222222 11111 111 11 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111111 3333 11111111 11111 11 777777777777777777777777777777777777777777777777777777777777777777 1 222222 1111 1111 11 11 4444444444444 111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 1 88 5 7 666 2 99 11111 77 99999999999999 6 00 2 7 1 1 5 0 5 1 000 5 888888888888 44444 666 99999 1 33 5 0 000 11 4 1 5 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 777 0 3 00 4 4 4444444 66 2 4 1111 4 4 777 9999 3 666 3 3 4 4 1 4 666 66 66666666 2 4 777 4 66 77777 1 4 4 00 555555555555555555555555555555555555555555555555555555555555555555 3 7777 3 1 7777 3 3 1 666 1 55 4 666666 5 66 3 5 8888 777 0000 5 0000 0 8 11 11 8 8 0000000000000 6 8 0 8 999 0 0 666666 000000000000000000000000000000000000000000000000000000000000000000000000000 8
lowQualScore : .. . . .. . . ... . .. ..... .. .............. . .. . . . . . . . . ... . ............ ..... ... ..... . .. . . ... .. . . . .. ............................................................................................................................ . ... . . .. . . ....... .. . . .... . . ... .... . ... . . . . . . ... .. ........ . . ... . .. ..... . . . .. .................................................................. . .... . . .... . . . ... . .. . ...... . .. . . .... ... .... . .... . . .. .. . . ............. . . . . ... . . ...... ........................................................................... .
lowQualScore : 88 2 2 88 2 8 777 2 22 33333 77 77777777777777 7 33 2 5 7 0 7 6 7 4 000 7 111111111111 99999 777 66666 4 33 0 1 000 77 0 4 7 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 888 1 9 11 4 4 4444444 11 9 4 8888 7 4 888 5555 6 444 6 6 1 0 0 0 777 11 11111111 2 0 000 0 11 22222 9 4 4 66 999999999999999999999999999999999999999999999999999999999999999999 6 3333 3 3 7777 6 6 4 333 1 55 0 000000 0 44 0 7 3333 111 6666 0 6666 8 0 00 00 0 0 8888888888888 0 0 8 0 444 6 6 000000 444444444444444444444444444444444444444444444444444444444444444444444444444 0
consensus : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( family-1699 ) : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|1 : GCCAA--AATAAATATATT-GTTTGTTTCCCCTCGCC----C-GAGTCTAAGAAAGTCCTGCCAACCCAAAAAT--TTTTG---A-GTCATTTT-GGCGAAG---TT----TTTTTTTTTGA-TCG-GGAAAATGTCCAGAGCGAGGTCAGTATTTTA-TATTGA-CCAGA---AGT-TT----CAGT--A-TTT-T---ATT-TTTTTT--GGATCCAAATTCAAGAAATA---ATACAAAAAGAGG-TGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGA---TCTGGAAGGAATGGAATTTT-CAATGTTT-TAT-------T--TTACACTCGTA-TGATTAGACAATGAGCTAGCTTGCATATTT---GCACCAGGCTTT-G-CCCCT-GC---T-GT-GGACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCAAAAA-TTCAAATC-ACAAT--CC-----TGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----T--TTAATGGA-CAAAAACCAAG-AC-AGACAAATA----G--ACTGAT-TGCTGT-A-TGTTT--A-CAATGA--TCAATCCTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATTTCT-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCACC-AAAAAAAA--A---AAAAAAAAA----------------AACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|10 : -AATGAA-CAAAAACCTAG-AC-GAGCAA-TA----G-GGCCGAT-TGCTAT-A-TGATT--T-GAAT----T-GGTTATTCAG-T-AAAACG-TCTGCA--A-C-------TTTGC-T-ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGA-TTAAAT--AATTAAA-TTCTGCTGGCA-C-----------A---AAAAAAAAA--TTCT---------TAACCTAATTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACA
gi|11 : TTTGTTTCCCCTTGCCAGAAC-GAGTCTGAGTAAGCCCCCCTGACCCAACAGT--TTTTAAT-C---------------AG---TC--------------A-TCT-GGAAAATATCTGGTGCTAGATCAATATTTTT-TAACGA-CTGGA---AGT-TC----CAAT--G-TTT-TTTAGTTATTTTTT--G-GTTTCG--TC--GATATA---ATACAAAAAGAGA-TGGTTTGCTATATCGACAT-TGAGAAATGTCGT
gi|12 : AAGTCCCAATGACCCAAAAGT--TTTTAAA-CAGTCAGTTC-AGCAA-----TT----TTTTTTTTTAA-TCC-AGAAAATTTCCGGTGCTGGATTAATATTCAG-TATTGA-CCAGA---AGT-TT----CAAT--ATTTT-C---GTT-CGTTTC--A-ATCTAAAATCAAGAAGTA---ATACGAAAAGAGA-TGAT-TGCTAGATTGACAT-GGAGAAAtca
gi|13 : AC-CCTTTTTT-A-AC----ATGT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT---A-TA---TTGAATAAAA-TTCTGCTGGCA-C-ACACACAA--A---AAAAACAAACTT--T---------TA---TGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAACgattcaacggat
gi|13 : aaAATAT--GTTTGCTTCCTCTCTCCGGA-C-Gatattgaataagatattg
gi|14 : aaacccttttttaacatgtctgtaactttgctaatggttatagagattttatatattgaataaaattctgctggcacacacacaaaaaaaacaaacttttatgcttacctaccctcctctgaaatttagC-TTGCCATA-AAC--GT-----GCAAAAAATTCAAATC-CTGAT--CCGTATCTGT--------A----AAAGGATGTA-CAAAT-----A-T-ACCAACACAACA---C--A-AAGGGA-CAAAAACCTAG-AT-GGAC-AGTA----G-GACTAAT-TGC--T-A-TGATT--T-CAAC----T-GGTCCTTCgaataagatattg
gi|15 : g--ATTTAT--------A----ATG-----TA-CAAATCTAAGA-T-GC-------A----------AATGAA-AAAAAATTTAG-TA-AGA-AAATA----G-GACTGAT-TGTTAT-A-TATTT--T-CAAT-----CGGTCCTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATTTTC-G-AC----ATGT-C----TG
gi|16 : ttttgTTTTGCCAAATCAG---TATGGAAGGAACAGAATTTA-CAATGTTT-TACTTCAGAGT--TCAGACTCGCA-TCTATAGAGCATGAGCTG---T--GT-TTT---GCACCAGGCTTT-T-CCCCT-GC---T-GT-GGACt
gi|17 : ATCTTGCTAAATC-----------AGGAATGAAATTTA-CAATTTAT-TAT-------T--TCAAATTTATA-TGTTTTGGCAA--AGATG----------TT---GCACCAGCTTTT-C-CCTTT-CC---T-TT-GGACCAA-ATTAACCACGAG-AT--CG
gi|2 : TCA-TATTTTA-TATTGAACCAGAGACAGT-TTACTCCCATTCA-TTT-T---ATT-TTTTTTTGG-ATCCAAATTCAAGAAATA---ATACAAAAAGAG--TGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|2 : CAAATTGA---TGTG-AAGGAA-GGAATTTTTCAATGTTAATAT-------TCTTTACACTCGT--TGATTAGACAATGAGCAGC--TGAAT-TTTTTTGCACCAGGCTTTTG-CC--T-GC---T-GT-GGACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA-TCAAAGTT-ACAAT--TC--G-CTGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----TT-G-AATGGAACAAAAACC-AG-AC-AGACAAATA----G--ACTGATCTGCTGTCA-TGTTT--TACAATGGAATCAATC-TTCAT-AAAAAATGAC--ACAG-A-CTACACCATTATCTG-AC----ATGT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT---A-T-------AAT--AA-TTC-GCTGGCA-CCAAAAAAAA--A---AAAAAAAAA--A--A---------AAACCTTTTAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAAcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgGCCAA--AATATAAATATT-GTTTGTTTCCCCTCGCCGAACC-AAGTCTGAGAAAGTCCCAGCGACCCAAAACT--TTTTATTCC-GTTATGTT-GGCAAAG---TTTTTATTTTTTTTTAA-TTC--TAGAATTTTCAGAAC-AGCTCGGAA--GAA-AACTGA-CCAGG---AGTGTT----C-AT--C-TTTGT---GTT-GGTTTT--G-ATCT---ATT-AGAG----------GAAAAGAGA-TGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGACaat
gi|3 : cagATCTTGCCAAATCGG---TCTGGAAGAAACAGACTTTA-CAATGTTT-TAC-------T--TTA-ACTTGTA-TGATTAAGCAATGAGCT----TGTGT-TTT---GCATGTGGTTTT-G-CCCCT-GC---T-GT-AGTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--ATAT---GCGAAAA-TCTGAATG-ACGAT--CTCGATTTGT--------A----ATC-----TA-AAAA---------------------------------GGA-CTAAAACCTAA-AT-GGATAA-TA----G-GACTGAT-TGCTAT----GTTT--T-CGAT----T-GGTCCTTCAT-TAAAAGTGACCaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|4 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaGCCAA--GGTAGAAATATT-GTT-ATTTCCCCTCACCTGA-CCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTTTGTTTC-GTCATTTT-CACAAAGAAATT----TGT------AAGTTC-AGGAAATTTCCCGTGCCAGATCAGTATTTAA-TAAAGA-TCAGA---AGT-TT-------------TT-C---ATA-TACTT-------CTAAAATCAAGAAATATTAATACGAAAAGCGT-TGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACga
gi|4 : gCTTGCCCAATCGGACATCTT------AC---ATTTA-CAATGTTT-TAT-------C--TAAGACTTGTA-TGTTTAGACAATAAGCT----TGTGT-GCT---GCACCAAGCTTT-A-TCCCT-GC---T-GT-GGATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----GCGAAAA-TTACAATCTAGAAT--TT--TTTTTT--------A----TTT-----TA-CAAAG-----ATT-AA-------ATTATGT--G-AATGCA-TAAAAACCTAA-AC-AGAT-GATA----G-GACGGAT-accnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|5 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagGCCAATTGTTAAAAATATTTGCTTGTTTCCCCTC-CTAGA-CTGAGT----GAAAATACCACCGATTCAAAAGG--TTTCATT-C-GTCATTTTTGACAAA-----C----TTTGTTTTTAA-TCTTGGAAAATT-CCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT----CTAT--ACTTT-C---ATT-GGTTTT--G-ATCTAAAATCAAGAAATA---TTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAAC
gi|5 : gaATCTTGCAAAATCAA---TTTGGAAGAAATTGAATTTA-TA--GTTT-CAT-------T--TCAGACTTGGAACGTTTAGAAAATGAGTT----TGAGT-TCT---GCACCAGACTTA-G-GCCCT-GC---T-GTTGGACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-acctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|6 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcTC-G-CTCCTTAC---TTGT-G-ACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAGTGAAAA-TCCACATC-ATGAT--CCC-AT---T--------A----A-------TAGCAACC-----A-C-A--------AC----------ATGGA-CAAAAACCTAGTATTGGACAAATACTAAGTGACTC-T-TGCTCT-A-AGTTTATT-CAAT----TTGGCCCTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATTTTC-GCAC----A-GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT---AAT----T--GAATAAAGTTCTGCTGACA-C-AAAAAAAACCACCCCAAAAAACA--T--TTCTCACCACTAACCTTTT--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|7 : ATCTTGTCAAATCAG---TCTGGAAGGAA-GGAATTCA-CAATTCTT-TAT-------T--TCAGATCTGAA-TGTTTAGACAATGAGCT----TGCGA-TTT---GCACCAAGCTTC-GTCCCCT-AC---T-AT-AGACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----GC-AAAA-TTCAAATC-ACGTTCCCC--ATCTGT--------AAAAGATC-----TA-CAAAT-----A-T-ATG------ACA---C--G-AATGGA-C-AAAACCTAG-TT-AGAC-AATA----T-GACTGAT-TGCTAT-A-TG-TT--T-CAAT----T-GGTCCTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATTTTC-A-AC----ATGT-C----TG
gi|8 : CCAAACTGG---GCTGGAAGGACTGAAATTTA-TAATGAGT-TAA-------T---CAGACTCGTA-TGTTTAGACAATGAGCT----TGCAT-TTT---GCACCAGGCTTC-A-CCCCT-GC---T-GT-GGAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----TCGAAAA-TCTAAATC-ACGATG-CCA-ATTTGTAAAAAAAAA----ATC-----TA-CAAATGA---A-TGAC-------A-----T--G-ATTGGA-CAAAATTATTG-TC-AGAC-AATA----G-GACAGAC-TGCTTT-C-TGTTT--T-CAat
gi|9 : atcaCACAAGGCTTA-A-ATCTT-GCAGCT-GT-GGACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----GCGAAAA-TCCAAATC-ATGAT--CCCAATCTCCAGAA----A----AAC-----TA-CAAAT-----A-T-AC-------GA----CGGG-GATGGA-CAAAAAACTAG-TT-GTAC-AATA----G-GACTGAT-TGCCAT-ACTGTTT--T-TCAG----TCGGTCCTT-AT-TAATAATGACTGGCTGGACCTTT-CCATTTTC-G-AC----ATGT-C----TGTA
blockSeqs : TT A T TT G A AC C GT AACA TG GTTTTTATTTT G TG G T A T A A G GAC G ACTCCCATTCA TTTA ATT TTGG C AA A TTA GG T C G TA ACA G CA T A TTCAGAG CT G A GC A . TTT TTG T AGC T T A T T T GCC AT ATGATCTC A C CCA G AT CCGAA A A T CC GTATCTGTAAAAGGATGTACAAATATACCAACACAACACA A TATT A G CTAA T C A CA A AT A GGAATC C CT G C TACA TG ATAA A CATA A AT CA T C TAGATTAAAT T G . CAA CCACCC CTTTTATGCTTACCTACCCTCCTCTGAAATTTAGCGTCC C
blockSeqs : . G G T T G CC A . TTCC A GAAATTTGT . G G T A A . . A . . CAATAT GT CG TG A AT A . A T T . . . G TG . . . . A . G T . . CGT . . . . G . A . C . . T . . . . AT C . . G AATTTGTAAAAAAAAAATCTACAAATGAATGACATG . AC A A . . . A AC A . . TT . AT A . CAC GC . . . . . . . . ATATTG A . . AC A TTCTTAACCTAATTACTCTCTTCTGAAATTTCGAATTG .
blockSeqs : . T A T G G CC A . TTTC G TTTTTT . A A C G T . . A . . CTATAC C TT CA A AA A . A C T . . . G CA . . . . C . G T . . TT . . . . G . A . T . . A . . . . . G . . . CAATCTCCAGAAAAACTACAAATATACGACGGG . AT A A . . . G A T . . TC . CA G . TGC T . . . . . . . . AATT T . . AA A TTTCTCACCACTAACCTTTTCCTAAAATTTAGGTCAT .
blockSeqs : . A T CT G . ATC C CTTTG . A C A G A . . A . . CAATG T GG TG A AA A . A C C . . . G TT . . . . G . . A . . TC . . . . G . A . T . . A . . . . . G . . . ATCTGTAAAAGATCTACAAATATATGACACG . TA A A . . . A A T . . T . TA G . TTT A . . . . . . . . AT . . . . A AAAAACCTTTTAACCTACCCTCG .
blockSeqs : . A C A . TTC . GTC . . A . G A . . A . . CATC C TA TG A A . . T C T . . G TG . . . . G . . C . . TG . . . . G . T . T . . T . . . . . G . . . TTTTTTATTTTACAAAGATTAAATTATGTG . AC A A . . . C A T . . T . TG . . GC G . . .
blockSeqs : . T . . G . . . C GG . . . . . . . T . . . G . . . . G . . C . . TA . . . . C . A . C . . A . . . . . G . . . ATTTATAATGTACAAATCTAAGATGCA . AT . A . . . A A T . . C . . . . . A . . .
blockSeqs : . . C . . . . G . . . . . AG . . . . G . T . T . . A . . . . . G . . . GCTGCAAGCTAAAGTATACACTTG . AC . A . . . T A T . . T . G . . .
blockSeqs : . . G . . . . . . . . . . CG . . . . . . T . T . . . . . . . . . . . . CATTAATAGCAACCACAAC . TT . A . . . A C T . . T
blockSeqs : CA . . . . . . T . T . . . CGATTTGTAATCTAAAAA . TC . . . . . . . . . .
blockSeqs : AA . . . . . TT . . . . .
blockSeqCons : CC* TTCC* NTTTT********* CAATC******* CG*** **** T***** AAT**********
originalCons : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGA-C-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATT-C-GTCATTTT-GGCAAAG---TT----TTTTTTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT----CAAT--A-TTT-C---GTT-TNTTTT--G-ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCTG---TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAAT----TCGGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT---A-T----T--AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
finalCons : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGACC-GAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATTCC-GTCATTTT-GGCAAANTTTT---------TTTTTAA-TCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TTCAATC-------TTT-C---GTT-TNTTTCG---ATCTAAAATCAAGAAATA---ATACGAAAAGAGA-TGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGCT----TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TGTTT--T-CAATT-----GGTCCTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCATAAT----------AATTAAA-TTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 2222222 11 111 3333333333333333 11111 1111 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111111 1111111 11111111 11 11111 11 777777777777777777777777777777777777777777777777777777777777777777 1 11111 1111 1111 11 11 4444444444444 1 111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 1 0 0 3 1 2 99 4444 77 2222222 99 00 2 7 1 1 5 0 5 1 000 5 6666666666666666 66 666 44444 5 0 5 0000 5 6 4 1 5 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 777 0 3 00 4 4 4444444 66 2 4 6666666 6 4 777 9999 3 666 3 3 4 4 1 4 666 66 66666666 2 4 777 4 22 11111 1 4 4 00 555555555555555555555555555555555555555555555555555555555555555555 3 7777 7 7777 3 3 66 4 4 55 55 4 33333 66 777 5 66 3 5 8888 777 0000 5 0000 0 8 11 11 8 8 4444444444444 1 0 8 999 0 0 666666 000000000000000000000000000000000000000000000000000000000000000000000000000 8
lowQualScore : .. . . . . . . . .. .... .. ....... .. .. . . . . . . . . ... . ................ .. ... ..... . . . .... . . . . . .. ............................................................................................................................ . ... . . .. . . ....... .. . . ....... . . ... .... . ... . . . . . . ... .. ........ . . ... . .. ..... . . . .. .................................................................. . .... . .... . . .. . . .. .. . ..... .. ... . .. . . .... ... .... . .... . . .. .. . . ............. . . . ... . . ...... ........................................................................... .
lowQualScore : 88 2 2 0 8 2 4 2 22 8888 77 5555555 22 33 2 5 7 0 7 6 7 4 000 7 7777777777777777 11 777 44444 0 6 0 1111 7 0 0 4 7 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 888 1 9 11 4 4 4444444 11 9 4 3333333 4 4 888 5555 6 444 6 6 1 0 0 0 777 11 11111111 2 0 000 0 22 11111 9 4 4 66 999999999999999999999999999999999999999999999999999999999999999999 6 3333 7 7777 6 6 11 0 0 11 55 0 77777 11 888 0 44 0 7 3333 111 6666 0 6666 8 0 00 00 0 0 0000000000000 2 8 0 444 6 6 000000 444444444444444444444444444444444444444444444444444444444444444444444444444 0
consensus : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGACCGAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATTCAGTCATTTT-GGCAAA------NTTTTTTTTT--AATCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT-----CAA---T-C-TTT-CGTT-TNTTTT--G-ATCTAAAATCAAGAAA---TAATACGAA-AAGAGATGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGC--T----TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TG-TTT--T-CAAT---C-GG--TC---CTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT-------A-ATTGAATNAAATTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
Reference ( family-1699 ) : GCCAA--GATAAAAATATT-GTTTGTTTCCCCTCGCCGGACCGAGTCTGAGAAAGTCCCGCCGACCCAAAAGT--TTTTATTCCGTCATTTT-GGCAAA------NTTTTTTTTT--AATCC-GGAAAATTTCCGGTGCNAGATCAGTATTTNA-TATTGA-CCGGA---AGT-TT-----CAA---T-C-TTT-CGTT-TNTTTC--G-ATCTAAAATCAAGAAA---TAATACGAA-AAGAGATGGTCTGCTAGATCGACAT-GGAGAAATGTCGTCTACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTGCCAAATCGG---TCTGGAAGGAACGGAATTTA-CAATGTTT-TAT-------T--TCAGACTCGTA-TGTTTAGACAATGAGC--T----TGCGT-TTT---GCACCAGGCTTC-G-CCCCT-GC---T-GT-GGACCGA-ANTGGCCACGAA-GT--CGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCGAAAA-TCCAAATC-ACGAT--CC--ATCTGT--------A----ANC-----TA-CAAAT-----A-T-AC-------AC----C--G-AATGGA-CAAAAACCTAG-AC-GGACAAATA----G-GACTGAT-TGCTAT-A-TG-TTT--T-CAAT---T-GG--TC---CTTCAT-TAAAAATGACCNGCAGGA-CTAC-CCATTTTC-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT-------A-AT--AATTAAATTCTGCTGGCA-C-AAAAAAAA--A---AAAAAAAAA--T--T---------TAACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|1 : GCCAA--AATAAATATATT-GTTTGTTTCCCCTCGCC----CGAGTCTAAGAAAGTCCTGCCAACCCAAAAAT--TTTTG---AGTCATTTT-GGCGAA------GTTTTTTTTTTTGATCG-GGAAAATGTCCAGAGCGAGGTCAGTATTTTA-TATTGA-CCAGA---AGT-TT-----CAG---T-A-TTT-TATT-TTTTTT--GGATCCAAATTCAAGAAA---TAATACAAA-AAGAGGTGGTTTGTGAGATTGATCT-GGAGAAAAGTCATCCACAGGATT--AGGGTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGCCAAATTGA---TCTGGAAGGAATGGAATTTT-CAATGTTT-TAT-------T--TTACACTCGTA-TGATTAGACAATGAGC--TAGCTTGCATATTT---GCACCAGGCTTT-G-CCCCT-GC---T-GT-GGACTGA-AATGGCCACGAA-GT--TGCCA--TCTT--------GGTAC-TTG---TA-AAC--GT-----GCAAAAA-TTCAAATC-ACAAT--CC-----TGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----T--TTAATGGA-CAAAAACCAAG-AC-AGACAAATA----G--ACTGAT-TGCTGT-A-TG-TTT--A-CAATGATC-AA--TC---CTTCAT-TAAAAATGACCTACAGGA-CTAC-CCATTTCT-G-AC----ATGT-C----TGCAACTTT-GC--TA--ATGGTC-AT-GGGAATTTCAT-------A-TT--AATTAAATTCTGCTGGCACC-AAAAAAAA--A---AAAAAAAAA----------------AACCTTTTTAC-CTA---------CCC------------TC----G-------------GGAGAGGGGAA-ACAAAC
gi|10 : -AATGAA-CAAAAACCTAG-AC-GAGCAA-TA----G-GGCCGAT-TGCTAT-A-TG-ATT--T-GAAT---T-GG--TT---ATTCAG-T-AAAACG-TCTGCA--A-C-------TTTGC-T-ACATAAATGTAC----TACA----T-G---TA--ATAGTC-AT-GGGAATCTTACTAGATTAA-AT--AATTAAATTCTGCTGGCA-C-----------A---AAAAAAAAA--TTCT---------TAACCTAATTACTCTC---------TTCTGAAATTTCGAATT----G-------------GGAGAGGGGAA-ACA
gi|11 : TTTGTTTCCCCTTGCCAGAACGAGTCTGAGTAAGCCCCCCTGACCCAACAGT--TTTTAATCAGTC-------------------------------ATCT-GGAAAATATCTGGTGCTAGATCAATATTTTT-TAACGA-CTGGA---AGT-TC-----CAATGTT-T-TTT-AGTTATTTTTT--G-GTTT--CGTC--GATA---TAATACAAA-AAGAGATGGTTTGCTATATCGACAT-TGAGAAATGTCGT
gi|12 : AAGTCCCAATGACCCAAAAGT--TTTTAAACAGTCAGTTC-AGCAAT------TTTTTTTTTT--AATCC-AGAAAATTTCCGGTGCTGGATTAATATTCAG-TATTGA-CCAGA---AGT-TT-----CAA---TAT-TTT-CGTT-CGTTTC--A-ATCTAAAATCAAGAAG---TAATACGAA-AAGAGATGAT-TGCTAGATTGACAT-GGAGAAAtca
gi|13 : AC-CCTTTTTT-A-AC----ATGT-C----TGTAACTTT-GC--TA--ATGGTT-AT-AGAGATTTTAT-------ATATTGAATAAAATTCTGCTGGCA-C-ACACACAA--A---AAAAACAAACTT--T---------TA---TGCTTAC-CTA---------CCC------------TCCTCTGAAATTTAGCGTCCGGAGAGAGGAA-GCAAACgattcaacggat
gi|14 : aaC-TTGCCATA-AAC--GT-----GCAAAAAATTCAAATC-CTGAT--CCGTATCTGT--------A----AAAGGATGTA-CAAAT-----A-T-ACCAACACAACA---C--A-AAGGGA-CAAAAACCTAG-AT-GGAC-AGTA----G-GACTAAT-TGC--T-A-TG-ATT--T-CAAC---T-GG--TC---CTTCatattgaataagatattg
gi|15 : g--ATTTAT--------A----ATG-----TA-CAAATCTAAGA-T-GC-------A----------AATGAA-AAAAAATTTAG-TA-AGA-AAATA----G-GACTGAT-TGTTAT-A-TA-TTT--T-CAAT---C-GG--TC---CTTCAT-TAAAAATGACATGCAGGA-CCAC-TCATTTTC-G-AC----ATGT-C----TG
gi|16 : ttttgTTTTGCCAAATCAG---TATGGAAGGAACAGAATTTA-CAATGTTT-TACTTCAGAGT--TCAGACTCGCA-TCTATAGAGCATGAGC-------TGTGT-TTT---GCACCAGGCTTT-T-CCCCT-GC---T-GT-GGACt
gi|17 : ATCTTGCTAAATC-----------AGGAATGAAATTTA-CAATTTAT-TAT-------T--TCAAATTTATA-TGTTTTGGCAAAGA---------TG-----TT---GCACCAGCTTTT-C-CCTTT-CC---T-TT-GGACCAA-ATTAACCACGAG-AT--CG
gi|2 : TCA-TATTTTA-TATTGAACCAGAGACAGT-TTACTCCCAT---T-CATTT-TATT-TTTTTTTGG-ATCCAAATTCAAGAAA---TAATACAAA-AAGAG-TGTTTTGTGAGATTGATCTGGGAGAAAAGTCA-CCACAGGATTTAAGGATTCAAC
gi|2 : CAAATTGA---TGTG-AAGGAA-GGAATTTTTCAATGTTAATAT-------TCTTTACACTCGT--TGATTAGACAATGAGCAGC----TGAAT-TTTTTTGCACCAGGCTTTTG-CC--T-GC---T-GT-GGACT-A-AATGGCCACGAA-GC--TTCCAATCCTT----------TACCTTG---TA-A-C--GT-----GGCAAAA-TCAAAGTT-ACAAT--TC--G-CTGC--------A----AGC-----TA--AAGT-----A-T-AC-------AC----TT-G-AATGGAACAAAAACC-AG-AC-AGACAAATA----G--ACTGATCTGCTGTCA-TG-TTT--TACAAT-----GGAATCAATCTTCAT-AAAAAATGAC--ACAG-A-CTACACCATTATCTG-AC----ATGT-C----TGCAACTTT-GCATTA--ATGGCCTAT-GGGAACTTCAT-------A--T--AAT--AATTC-GCTGGCA-CCAAAAAAAA--A---AAAAAAAAA--A--A---------AAACCTTTTAAC-CTA---------CCC------------TC----G----------------GAGAGGAACACAAAcatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgcaaattgatgtgaaggaaggaatttttcaatgttaatattctttacactcgttgattagacaatgagcagctgaatttttttgcaccaggcttttgcctgctgtggactaaatggccacgaagcttccaatcctttaccttgtaacgtggcaaaatcaaagttacaattcgctgcaagctaaagtatacacttgaatggaacaaaaaccagacagacaaatagactgatctgctgtcatgttttacaatggaatcaatcttcataaaaaatgacacagactacaccattatctgacatgtctgcaactttgcattaatggcctatgggaacttcatataataattcgctggcaccaaaaaaaaaaaaaaaaaaaaaaaccttttaacctaccctcggagaggaacacaaaaat
gi|3 : tcatattttatattgaaccagagacagtttactcccattcattttatttttttttggatccaaattcaagaaataatacaaaaagagtgttttgtgagattgatctgggagaaaagtcaccacaggatttaaggattcaaccatccgttttaatccaacaaactgtatcttcgcattgcgtggtctgaattgctgcagcaaggttttgctaatccatgtacttgtcactgttccaaacgaggaacaacgaataaaccccaatttcgtgtgtcatacctgGCCAA--AATATAAATATT-GTTTGTTTCCCCTCGCCGAACCAAGTCTGAGAAAGTCCCAGCGACCCAAAACT--TTTTATTCCGTTATGTT-GGCAAAGTTTTTATTTTTTTTT--AATTC--TAGAATTTTCAGAAC-AGCTCGGAA--GAA-AACTGA-CCAGG---AGTGTT-----C-A---T-C-TTTGTGTT-GGTTTT--G-ATCT---ATT-AGAG----------GAA-AAGAGATGGTCTGCTAGATCGGCAT-GAAGAAATGTCATCTTCTGGATT--AGGTTTTGACaat
gi|3 : cagATCTTGCCAAATCGG---TCTGGAAGAAACAGACTTTA-CAATGTTT-TAC-------T--TTA-ACTTGTA-TGATTAAGCAATGAGC--T----TGTGT-TTT---GCATGTGGTTTT-G-CCCCT-GC---T-GT-AGTCC-A-AATGACCACAAA-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AACATAT-----GCGAAAA-TCTGAATG-ACGAT--CTCGATTTGT--------A----ATC-----TA-AAAA---------------------------------GGA-CTAAAACCTAA-AT-GGAT-AATA----G-GACTGAT-TGC--T-A-TG-TTT--T-CGAT---T-GG--TC---CTTCAT-TAAAAGTGACCaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaatcttgccaaatcggtctggaagaaacagactttacaatgttttactttaacttgtatgattaagcaatgagcttgtgttttgcatgtggttttgcccctgctgtagtccaaatgaccacaaagttgccatcttggttcttgtaaacatatgcgaaaatctgaatgacgatctcgatttgtaatctaaaaaggactaaaacctaaatggataataggactgattgctatgttttcgattggtccttcattaaaagtgaccga
gi|4 : caggccaaaatataaatattgtttgtttcccctcgccgaaccaagtctgagaaagtcccagcgacccaaaactttttattccgttatgttggcaaagtttttatttttttttaattctagaattttcagaacagctcggaagaaaactgaccaggagtgttcatctttgtgttggttttgatctattagaggaaaagagatggtctgctagatcggcatgaagaaatgtcatcttctggattaggttttgacaccctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatattaaGCCAA--GGTAGAAATATT-GTT-ATTTCCCCTCACCTGACCAAATCTGAGAAAGTCCTGCCTACTCAAAAGTGTTTTTGTTTCGTCATTTT-CACAAA------GAAATTTGTA--AGTTC-AGGAAATTTCCCGTGCCAGATCAGTATTTAA-TAAAGA-TCAGA---AGT-T----------------TTT-CATA-TACT-------TCTAAAATCAAGAAATATTAATACGAA-AAGCGTTGGTCTGTTAGACTGACAC-CCAGAAATATTGTGTACAGGGCT--AGGGTTCAACga
gi|4 : gCTTGCCCAATCGGACATCTT------AC---ATTTA-CAATGTTT-TAT-------C--TAAGACTTGTA-TGTTTAGACAATAAGC--T----TGTGT-GCT---GCACCAAGCTTT-A-TCCCT-GC---T-GT-GGATTGA-AATGGCCAAGAG-GT--TGCCA--TCT-----------TAC--------A-AA----T-----GCGAAAA-TTACAATCTAGAAT--TT--TTTTTT--------A----TTT-----TA-CAAAG-----ATT-AA-------ATTATGT--G-AATGCA-TAAAAACCTAA-AC-AGAT-GATA----G-GACGGAT-accnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagcttgcccaatcggacatcttacatttacaatgttttatctaagacttgtatgtttagacaataagcttgtgtgctgcaccaagctttatccctgctgtggattgaaatggccaagaggttgccatcttacaaatgcgaaaattacaatctagaatttttttttattttacaaagattaaattatgtgaatgcataaaaacctaaacagatgataggacggat
gi|5 : ggccaaggtagaaatattgttatttcccctcacctgaccaaatctgagaaagtcctgcctactcaaaagtgtttttgtttcgtcattttcacaaagaaatttgtaagttcaggaaatttcccgtgccagatcagtatttaataaagatcagaagtttttcatatacttctaaaatcaagaaatattaatacgaaaagcgttggtctgttagactgacacccagaaatattgtgtacagggctagggttcaacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagGCCAATTGTTAAAAATATTTGCTTGTTTCCCCTC-CTAGACTGAGT----GAAAATACCACCGATTCAAAAGG--TTTCATTC-GTCATTTTTGACAAA------CTTTGTTTTT--AATCTTGGAAAATT-CCAGTGAAAGATCTGTATTTTAATATTA---CGGA---AGT-TT-----CTA---TAC-TTT-CATT-GGTTTT--G-ATCTAAAATCAAGAAA---TATTACAAAGAGGGGGTGGTCTGCTAGGTTGACAT-GGAGAAATGTCGTATATAGAGTT--AGGGTTCAAC
gi|5 : gaATCTTGCAAAATCAA---TTTGGAAGAAATTGAATTTA-TA--GTTT-CAT-------T--TCAGACTTGGAACGTTTAGAAAATGAGT--T----TGAGT-TCT---GCACCAGACTTA-G-GCCCT-GC---T-GTTGGACCGA-ATTGGCCACAAG-GT--CGCCA--TCTT--------GGTAC-TTG---CA-acctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcatcttgcaaaatcaatttggaagaaattgaatttatagtttcatttcagacttggaacgtttagaaaatgagtttgagttctgcaccagacttaggccctgctgttggaccgaattggccacaaggtcgccatcttggtacttgca
gi|6 : gagccaattgttaaaaatatttgcttgtttcccctcctagactgagtgaaaataccaccgattcaaaaggtttcattcgtcatttttgacaaactttgtttttaatcttggaaaattccagtgaaagatctgtattttaatattacggaagtttctatactttcattggttttgatctaaaatcaagaaatattacaaagagggggtggtctgctaggttgacatggagaaatgtcgtatatagagttagggttcaacacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcTC-G-CTCCTTAC---TTGT-G-ACCGGTAATTGCCACCAA-GTGCCACCA--TCTTATGATCTCGGT-C-ATG---TAGAAC--GTCCGAAGTGAAAA-TCCACATC-ATGAT--CCC-AT---T--------A----A-------TAGCAACC-----A-C-A--------AC----------ATGGA-CAAAAACCTAGTATTGGACAAATACTAAGTGACTC-T-TGCTCT-A-AG-TTTATT-CAAT---TTGG--CC---CTTCATCTAAAACTGACCAAGAGAA-C-GC-CCATTTTC-GCAC----A-GT-CCATATGCAACTTTAGC--TACAATG-TC-ATCGGAAATTTCAT-------A-ATTGAATAAAGTTCTGCTGACA-C-AAAAAAAACCACCCCAAAAAACA--T--TTCTCACCACTAACCTTTT--C-CTAAAATTTAGGTCA------------T-------------------GGAGAGGGAAA-CCAAAC
gi|7 : ATCTTGTCAAATCAG---TCTGGAAGGAA-GGAATTCA-CAATTCTT-TAT-------T--TCAGATCTGAA-TGTTTAGACAATGAGC--T----TGCGA-TTT---GCACCAAGCTTC-GTCCCCT-AC---T-AT-AGACCGA-ATTGGCCACAAG-GT--TGCCA--TCTT--------GGTTC-TTG---TA-AAC--GT-----GC-AAAA-TTCAAATC-ACGTTCCCC--ATCTGT--------AAAAGATC-----TA-CAAAT-----A-T-ATG------ACA---C--G-AATGGA-C-AAAACCTAG-TT-AGAC-AATA----T-GACTGAT-TGCTAT-A-TG--TT--T-CAAT---T-GG--TC---CTTCAT-TAAAAATGACTAGCAGGC-CTGC-CCATTTTC-A-AC----ATGT-C----TG
gi|8 : CCAAACTGG---GCTGGAAGGACTGAAATTTA-TAATGAGT-TAA-------T---CAGACTCGTA-TGTTTAGACAATGAGC--T----TGCAT-TTT---GCACCAGGCTTC-A-CCCCT-GC---T-GT-GGAACCA-ATTGTCCTTGAA-GT--TGTCA--TCTT--------GGCAT-TTG---TA-AAC--AT-----TCGAAAA-TCTAAATC-ACGATG-CCA-ATTTGTAAAAAAAAA----ATC-----TA-CAAATGA---A-TGAC-------A-----T--G-ATTGGA-CAAAATTATTG-TC-AGAC-AATA----G-GACAGAC-TGCTTT-C-TG-TTT--T-CAat
gi|9 : atcaCACAAGGCTTA-A-ATCTT-GCAGCT-GT-GGACAGA-GTTAGACACAAATGT--TGC-A--TCTT--------GGTAC-TTG---TA-TACATGT-----GCGAAAA-TCCAAATC-ATGAT--CCCAATCTCCAGAA----A----AAC-----TA-CAAAT-----A-T-AC-------GA----CGGG-GATGGA-CAAAAAACTAG-TT-GTAC-AATA----G-GACTGAT-TGCCAT-ACTGTTTT--T-CAGT---C-GG--TC---CTT-AT-TAATAATGACTGGCTGGACCTTT-CCATTTTC-G-AC----ATGT-C----TGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGATAGGAGTA