lowQualScore : 222 1 22222 222 222 222 3333333 1 2222 222 3333333333 222 11 1 11 33333333 111 1111 22 22 55555555555555555555 1 1 44444444 22 2 66666666666666666666666666666666666 1111 2 111 22 2 1 2 3333 1 111 11 33333 1 222 33333 1 2222 11 11 1 1 1 22 22222 2 222 22222 2 1 1 222 11 11 2 11 1 11 2 22222 2222 1 11 3333 2222 2222 1 222 11111 1 11 22 11 1 2222
lowQualScore : 2 111 5 66666 2 111 3 000 111 3333333 2 5 4444 2 2 111 9999999999 000 4 2 88 5 4 88 55555555 888 7777 1 44 8 77 00000000000000000000 6 2 66666666 0 11 3 7 88888888888888888888888888888888888 4444 7 3 333 7 7 00 3 5 0 6 3 3333 3 999 44 1 33333 0 3 222 6 77777 7 5 3333 88 88 5 5 5 77 66666 0 111 44444 0 5 5 111 4 88 88 0 77 2 3 5 2 88 2 0 66666 2 1111 2 5 88 3 7777 4444 8888 3 222 7 11111 6 6 88 22 88 5 4 4444 2
lowQualScore : . ... . ..... . ... . ... ... ....... . . .... . . ... .......... ... . . .. . . .. ........ ... .... . .. . .. .................... . . ........ . .. . . ................................... .... . . ... . . .. . . . . . .... . ... .. . ..... . . ... . ..... . . .... .. .. . . . .. ..... . ... ..... . . . ... . .. .. . .. . . . . .. . . ..... . .... . . .. . .... .... .... . ... . ..... . . .. .. .. . . .... .
lowQualScore : 5 000 5 00000 5 000 0 555 000 0000000 5 0 5555 5 5 000 5555555555 555 0 5 55 0 0 00 00000000 777 7777 0 33 3 33 00000000000000000000 0 0 33333333 7 77 3 3 33333333333333333333333333333333333 0000 7 3 000 3 3 77 3 3 7 7 3 0000 3 777 77 0 00000 7 3 777 7 77777 3 0 5555 55 00 5 0 5 55 55555 0 000 55555 0 0 0 000 0 00 00 0 55 5 0 0 5 55 5 0 00000 5 0000 5 5 00 0 5555 5555 3333 3 777 3 77777 0 7 33 33 55 5 0 0000 5
consensus : ATGTCAAANTTTCACTAGACTTGTCTGGTCCTAGGANAGTAAACTCNCACACAAGTGTCGGACTCATAAGAAACTTTTTGAGNGACAGTGTGACTATAANAAANTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGGATATGGANATTNAACCATAATTCGGTAACANGCTCATTATATCGTGCTTTTAA-CCAAGCAC-TCTGAT-AAGAACACACGGCTTGA-------AATAGAG-TC--GCTA-GCCCGAGTCT-AT-T-T-CTCACTTTTC-GCCGA-TCTTTAATG--GAGAT-GGAT-TGCAAG-GATT-ACACG--G-CTTATAGTGACGTC-ACCAAGAAGATTAAN-AAGC-AATC-GACTGCTAC-AGTACA--AAAACA-ACCTA-AAGGGATTGAAGATTTCAT-CA-CAAAC-AAATT-A-TGGTGCTCC-TG-GATGAAATTGTAGAATCGCATAATAAAATTTTCGAACACTTGATTAGAAATGATTGCACCATCAGATGTACTGAAACTAGATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCNTTAACTTGGTACAGCACGNATTCATACANTNGTAGTGNAGTCAATAAACNACAATAACAGAGACAGANTAACACAACAGNTACATAAACTCTAAATTCTGTCCANTATATATACTAAATGACTATCTACCATAT----GT-ACAACGCATAATA-GCATTATTATTGGTAAAC-TTCATTAATTTAATTGCACTA--AATAT-TTTGGAGTTAATTTAATTCTANAATGTGGANTCATCA
Reference ( gi|2 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA-CAAAGTACTTCTAATTGAGAACTCA-GGCTTGA-------AATAG---TC--GCTATGCCTGAGTCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACGCTGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGAATCTGGCTGCTACGAGTACACAAAAACA-ACCTA-AAGGGATTGAAGATTTTAT-CAGCAAGC-AAATT-A-TGGTGCTCCATAGAATGAAATTGTAGAATCGCATAATAAAATTTTCGAACACTTGATTAGAAATGATTGCA--ATCAGATGTACTGAAA-TAGATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGTACAG-ACGGATTCATACAGTTGTAGTGCAGTCAATAAACCA-AATAACAGAGACAGACTAA-AC-ACAGCTATATAAACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACAATGCATAATAGGTATTATTATTGGTAAACATTCATTAATTTAATTGCACTA--AATATGTTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA-CAAAGTACTTCTAATTGAGAACTCA-GGCTTGA-------AATAG---TC--GCTATGCCTGAGTCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACGCTGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGAATCTGGCTGCTACGAGTACACAAAAACA-ACCTA-AAGGGATTGAAGATTTTAT-CAGCAAGC-AAATT-A-TGGTGCTCCATAGAATGAAATTGTAGAATCGCATAATAAAATTTTCGAACACTTGATTAGAAATGATTGCA--ATCAGATGTACTGAAA-TAGATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGTACAG-ACGGATTCATACAGTTGTAGTGCAGTCAATAAACCA-AATAACAGAGACAGACTAA-AC-ACAGCTATATAAACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACAATGCATAATAGGTATTATTATTGGTAAACATTCATTAATTTAATTGCACTA--AATATGTTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTTTCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACCA--ATTCG-TAACAAGC--ATT--------CTCTTAA-ACAAGCA--TCAGAT-AAGAACACACAGCTTGACAGCTGAAATAGAGGTCCAGCTGAAGCTGA-TCT---------CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG--G-CTCGCAGTAACATC-AC--AGA-GATTAAA-AAGC-AATCGGACT--CAC-AGTA----AAAACATACC----AAGGAT-GAAGATTTCA-----CAGAC-AAATTTA-TGGTG-TCGCTG--ATGAA--T-TAGA--C-CATAA--AAATTT--GAAC-CTTGATTA-AAATAAT-GCACCATTAAATG-----AAACTAGATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG--ACAGCAC-CATTCATACATTGGTA-TGAAGTCA--AAACGACAATAACA-----AGAATAACACAACAGGTAC-TAAA--TTAAATTCTGTCCACTATATATACTAAATGAC-A--TACCATATTGAAGTCACAATGCATACTA---ATTA----TGGTAAAC-TTCATTAATCTAATTGCCATC--AATA--TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|5 : catgCTTTTAATCCAAG-ACATCTGAT-AAGAACACACAGCTTGA-------GATAGAG-TC---CTA-GCTCGAAGCTGATCT-TCCTTATTTTGC--CCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG----CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC--ATC--ACTGCTAC-AGTCTA-------A-ACCTACAAGGGA-TGAAAATTACATACA--AAACAAAATT-GTTTGTGCTCC-T--GATGAAAT
gi|7 : gtactcaaaaaattttcttctcttctacacgttttcttttgtgaaaaataatctaatccattacaagcaattctcATAT----AT-ACCACGCATTATACACAC-ATTAT-GGTAAACTTTCATTTAATTAATT-CACTATCTATAT-TTTGGAGTa
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): CATGTTGATCACCAAAATCTTGTCATTTTTTATCTTTCATTAAAGTTGTTTCTTGGCATAAAATTAAATTTACAAGTCATAACAAGCATTCTCTTTAACAAGACTATTGCTATATAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGAAATTAGAGTTCCACTGAAGCTGTGCGATCGGCCGGACTTTTCCGCCCGATCTTTAATGAGATAAGGTTTATTGAGGCGGCGTGTCTCCAGTACGTCACAGAAGATTAAAAATGCAATGTTGTCTTGTGTCTATACTCACTAAAACATACCATCGCGATTGAATTTTTTCAGCAGACCTAAGGTTATGGTGCTCTCTTGTTAGTATGATACATTTATGACCTTACTAATATGCTGATACCTTCTGATTTAAGAAATATGCACATTAATATGAGATACTTTGACTTGAAGTGATGTAGATAGATAAATTTCATTACATTTATTGACATGCACCATTGGGTGAACATACATTTG
Unaligned ( gi|6 ): TTCAATTTATTTATTGACAGCACAATTCATACATTGGCATATAGTCAATAGCGAGAATATAACAAAAGGAAATTCAATAGTGCACATGTATGTAGTTGAGTTTCAGTAACGTATGATACATATACGAGGCGATGTTCATATGCATACATATGATAAACTTTCATTACTAAGTTTATAAACTAACATTTTGAAGTCTTGAAATCTTTTCCGATATTAAAACACTAATTTAAGAAGTTATATATTTTTGGAGCAATTTCCATTATT
Unaligned ( gi|8 ): TTCAATTCAAGTTATTGACAGAGCCATTCATACATTGGCATATAGTCATAATCACAATAACGAGAATAACAAAGGGAATTAAATTAGATAGTCCACCTGCATGTAGTTATAATATTGACCAATTAGACTACATTGACTTCTAAACTCAAGCATATCATTCAGGGTCTAATTACTAAATTAGGAGT
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|10 ): TTCAATTGTATTTAGTTGACAGCAACATTCATACATTGCATATAGTCTAACACATACAAGAATAACACAAGGTATCAAATGCAAGATTAAATACTTGTCCCATGTTGTAGTTGAAATTAATGAAGTACGAATTACAT
Unaligned ( gi|11 ): TTTCTTTGATGAAAAAAACTAATTCTTTACAAGCATTCTATTCAACAAGCATCAGGTAAGAACACGCAGCATGAACTAAAGTCCAGCTGTAGAGCTCTGATTCTTC
Unaligned ( gi|12 ): TCTTTGATGAAAATAAACTAATTCTTTACAAGCATTCTATTCAACAAGCATCAGGTGAGAACACGCAGCTTGAACTAAAGTCCAGCTGTTGCTGATTCTTC
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|15 ): AATTCACGTCTCGACAATTTATTTACGAGCACCATTCATACATTGGCATGTTAGTCATAAAACACAAGAACACACAGGGAATTTAATTACATGG
Unaligned ( gi|16 ): TTCAAGTCAATTCAATGACAGCACCATTCATACATTGGCATATAGTCATAAATAAACACAATATA
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 111 1 1 22 1 3333 111 33 1 2222222 11 11 2 444444444 2 1 888888888888888888 1111 22222222222 11111111 1 11 11 333333333333333333 1 33 1 1111 1 2 111 111 555555555 1 1 111 11 33 1 333333333333 11 22222 11 22 2 333333333333 111111 222222 66666666666666666666 1 3333 2222 1 111 1 444444 2222222 11 2 1 11 22
lowQualScore : 1 7 88 77 1 7 1 6 88 7 1 6 7 1 1 7 6 0 0 1 1 777 111 0 0 1 55 0 0000 1 555 6 66 4 3 77 1111111 11 22 0 4 0 555555555 3 4 8 6 0 222222222222222222 8888 99999999999 88888888 3 6 00 0 0 77 8 222222222222222222 6 00 44 0 6 5555 0 0 88 4 444 8 000 8 444444444 8 88 5 44 8 0 333 9 3 777 33 2 333 00 0 222222222222 2 88 00000 88 6 6 7 1 7 6 5 4 33 1 1 5 66 555555555555 1 666666 4 555555 1 88888888888888888888 1 99 33 99 0 1 6666 3 99 44 1111 0 777 2 0 888888 9999999 33 0 0 2 33 33 7 7 0 1 7 1
lowQualScore : . . .. .. . . . . .. . . . . . . . . . . . . ... ... . . . .. . .... . ... . .. . . .. ....... .. .. . . . ......... . . . . . .................. .... ........... ........ . . .. . . .. . .................. . .. .. . . .... . . .. . ... . ... . ......... . .. . .. . . ... . . ... .. . ... .. . ............ . .. ..... .. . . . . . . . . .. . . . .. ............ . ...... . ...... . .................... . .. .. .. . . .... . .. .. .... . ... . . ...... ....... .. . . . .. .. . . . . . .
lowQualScore : 0 3 00 33 0 3 0 7 00 3 0 7 3 0 0 3 7 7 8 4 0 444 444 0 6 0 44 4 4444 5 888 7 77 0 3 33 7777777 00 55 0 2 8 000000000 2 0 0 0 8 000000000000000000 2222 00000000000 44444444 2 0 66 8 8 00 0 222222222222222222 0 00 22 8 0 4444 6 8 88 0 000 0 000 0 444444444 0 88 0 00 8 0 555 2 2 555 88 5 555 00 0 000000000000 5 55 55555 22 5 7 3 0 3 5 7 3 11 0 0 7 77 777777777777 4 999999 3 222222 0 00000000000000000000 0 00 55 55 5 0 5555 2 55 55 2222 0 555 0 0 000000 0000000 88 0 0 5 88 22 3 3 7 0 3 0
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGAAATTAAACCATAATTCGNTAACAAGCTCATTNTATCGTGCTTTTAA-C-AAG-CA--TCNGA-TGAGAACACGCGGCTTGA-------AATAGAGTCG-CTATGCCCGAGTCTA---TNTGTACTCACTTTTCGGCC-GACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTAC----ACGCTGTCTTAT----AGTGACGTCGACCAAGAAGATTAATAAA-GCGAA--TCTG-GC-TG---CTACGAGTACACAAAAACATACCTA-AAGGGATTGAAGATTTTAT-CAGCAAAC---A-AATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA-CATCAG-ATG---TACTGAAA-TAGATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGTAC-AGCAC-CATTCATACATTGGCA-TG-TAGTC---A--------ATAAA----CCACAATAACAGAGA--CAGANTAA-------------CACA---ACAGNTATATAAACTCTAAATTCTGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA---ATGCATA-ATAG---GTATTAT-----TATT--GGTAAACATT-CATTAATTTAATTGCACTAA--ATATGTTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAANTTTCACTAGACTTGTCTGGTCCTAGGANAGTAAACTCNCACACAAGTGTCGGACTCATAAGAAACTTTTTGAGNGACAGTGTGACTATAANAAANTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGGATATGGANATTNAACCATAATTCGGTAACANGCTCATTATATCGTGCTTTTAA-CCAAG-CAC-TCTGA-TAAGAACACACGGCTTGA-------AATAGAGTCG-CTA-GCCCGAGTCTA---TTT---CTCACTTTTC-GCC-GA-TCTTTAA--TGGAGA-TGGAT-TGCAAG-GA-TTAC----ACG--G-CTTAT----AGTGACGTC-ACCAAGAAGATTAA-NAA-GC-AA--TC-G-AC-TG---CTAC-AGT--ACAAAAACA-ACCTA-AAGGGATTGAAGATTTCAT-CA-CAAAC---A-AATT-A-TGGTGCTC-C-T-----GGATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCACCATCAG-ATG---TACTGAAACTAGATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCNTTAACTTGGTAC-AGCACGNATTCATACANTNGTAGTG-NAGTC---A--------ATAAA----CNACAATAACAGAGA--CAGANTAA-------------CACA---ACAGNTACATAAACTCTAAATTCTGTCCANTATATATACTAAATGACTATCTACCATAT----GT-ACA---ACGCATA-ATA----GCATTAT-----TATT--GGTAAAC-TT-CATTAATTTAATTGCACTAA--ATAT-TTTGGAGTTAATTTAATTCTANAATGTGGANTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA-CAAAG-TACTTCTAATTGAGAACTCA-GGCTTGA-------AAT--AGTCG-CTATGCCTGAGTCTA---TGTGTACTCACTCTTCGGCC-GACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTAC----ACGCTGTCTTAT----AATGACTTCGACCAAGAAGATTAATTAA-GCGAA--TCTG-GC-TG---CTACGAGTACACAAAAACA-ACCTA-AAGGGATTGAAGATTTTAT-CAGCAAGC---A-AATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAG-ATG---TACTGAAA-TAGATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGTAC-AG-ACGGATTCATACAGTTGTAGTG-CAGTC---A--------ATAAA----CCA-AATAACAGAGA--CAGACTAA--------------AC----ACAGCTATATAAACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA---ATGCATA-ATAG---GTATTAT-----TATT--GGTAAACATT-CATTAATTTAATTGCACTAA--ATATGTTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|11 : ATGAAAA--AAAC--TAATTCTTTA-CAAGC--ATTCTAT-------TCAA-C-AAG-CA--TCAGG-TAAGAACACGCAGCATGA-------ACTAAAGTC
gi|12 : tttctttgATGAAAAT-AAAC--TAATTCTTTA-CAAGC--ATTCTAT-------TCAA-C-AAG-CA--TCAGG-TGAGAACACGCAGCTTGA-------ACTAAAGTCcagctgtagagctctgattcttc
gi|15 : tctttgTACGAGCAC-CATTCATACATTGGCA-TGTTAGTC------------ATAAA----ACACAAGAACAcagctgttgctgattcttc
gi|16 : aattcacgtctcgacaatttattAC-AGCAC-CATTCATACATTGGCA-TA-TAGTCATAA--------ATAAA----C-ACAATAcacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA-CAAAG-TACTTCTAATTGAGAACTCA-GGCTTGA-------AAT--AGTCG-CTATGCCTGAGTCTA---TGTGTACTCACTCTTCGGCC-GACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTAC----ACGCTGTCTTAT----AATGACTTCGACCAAGAAGATTAATTAA-GCGAA--TCTG-GC-TG---CTACGAGTACACAAAAACA-ACCTA-AAGGGATTGAAGATTTTAT-CAGCAAGC---A-AATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAG-ATG---TACTGAAA-TAGATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGTAC-AG-ACGGATTCATACAGTTGTAGTG-CAGTC---A--------ATAAA----CCA-AATAACAGAGA--CAGACTAA--------------AC----ACAGCTATATAAACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA---ATGCATA-ATAG---GTATTAT-----TATT--GGTAAACATT-CATTAATTTAATTGCACTAA--ATATGTTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTTTCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACCA--ATTCG-TAACAAGC--ATT--------CTCTTAA-ACAAG-CA--TCAGA-TAAGAACACACAGCTTGACAGCTGAAATAGAG--GTCCA-GCTGAAGCTGA---TCT---C-CACTTTT--GCC-GA-TCTT-AA--TG-AGA-T--------AAG-GA-TTAC----ACG--G-CTCGC----AGTAACATC-AC--AGA-GATTAA-AAA-GC-AA--TC-GGAC-T-----CAC-AGT--A--AAAACATACC----AAGGAT-GAAGATTTCA-----CAGAC---A-AATTTA-TGGTGTCG-C-T-----G-ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAA-ATG--------AAACTAGATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG--AC-AGCAC-CATTCATACATTGGTA-TG-AAGTC---A--------A--AA----CGACAATAACA-------AGAATAA-------------CACA---ACAGGTAC-TAAATT--AAATTCTGTCCACTATATATACTAAATGAC-A--TACCATATTGAAGTCACA---ATGCATA-CTA------ATTA---------T--GGTAAAC-TT-CATTAATCTAATTGCCATCA--ATA--TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgACTTTTCCGCCCGA-TCTTTAA--T-GAGA-T--------AAG-GT-TTATTGAGGCG--G-CGTGTCTCCAGT-ACGTC-AC--AGAAGATTAA-AAATGC-AATGTT-G-TCTTGTGTCTAT-ACTC-ACTAAAACATACC-A-TCGCGATTGA--ATTTTTT-CAGCAGACCTAA-GGTT-A-TGGTGCTCTC-TTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCA-CATTAATATGAGATACT-----TTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA
gi|5 : catgttgatcaccaaaatcttgtcattttttatctttcattaaagttgtttcttggcataaaattaaatttacaagtcataacaagcattctctttaacaagactattgctatataaaggattacacacaggctgtaaggaacgttctcctgaaattagagttccactgaagctgtgcgatcggccggCTTTTAATCCAAGACA--TCTGA-TAAGAACACACAGCTTGA-------GATAGAGTC--CTA-GCTCGAAGCTGATCTTC---CTTATTTTGC--CC-GA-TCTTTAA--TG-AGA-T---------AG-GA-TTAC----AAC--G-CTTAT----A----CGTC-ACCAA--AGAT-AC-AAA-GC-A---TC---AC-TG---CTAC-AGT--CTAAA------CCTACAAGGGAT-GAAAATTACATACA--AAAC---AAAATT-GTTTGTGCTC-C-T------GATGA-A-ATtttattgacatgcaccattgggtgaacatacatttg
gi|7 : gtactcaaaaaattttcttctcttctacacgttttcttttgtgaaaaataatctaatccattacaagcaattctcAC-AGCAC-TATTCATACATTGACA-TG-TAGTC---ATCAACACAATAAAAAAATAACAACAA-AGGGAATCAAATTAAATTAAATACTGCCCACATGTACATGTATGTAG--TTGGATTTCAGT--AACATATATA-TATATGTATACATAT-ACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAAC-TTTCATTTAATTAATT-CACTATCTATAT-TTTGGAGTa
gi|8 : aattcattttaattcaatttattgTTGACAG-AGC---CATTCATACATTGGCA-TA-TAGTC------------AT-AA----TCACAATAACG-------AGAATAA-------------CA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTCAATTTATTTATTGACAGCACAATTCATACATTGGCATATAGTCAATAGCGAGAATATAACAAAAGGAAATTCAATAGTGCACATGTATGTAGTTGAGTTTCAGTAACGTATGATACATATACGAGGCGATGTTCATATGCATACATATGATAAACTTTCATTACTAAGTTTATAAACTAACATTTTGAAGTCTTGAAATCTTTTCCGATATTAAAACACTAATTTAAGAAGTTATATATTTTTGGAGCAATTTCCATTATT
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|10 ): TTCAATTGTATTTAGTTGACAGCAACATTCATACATTGCATATAGTCTAACACATACAAGAATAACACAAGGTATCAAATGCAAGATTAAATACTTGTCCCATGTTGTAGTTGAAATTAATGAAGTACGAATTACAT
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 3333333333 11 1 33 44444444 1 11 1 2222222 11 22 111111 1 1 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 333333333 1 1 111 11 22 222 1 2222 11 22222 11 1 222 11 2222 1111111 2222222222222 4444444444444 55555555555555555555555 222222 2222 11 22222222222222222 444444444444444444444 1 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 2 0 3 3 9 1111111111 0 2 66 88 88 5 00 1 55555555 0 99 3 6 88 1 3 888 1111111 11 6 77 000000 22 6 1 5 3 3 8 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 111111111 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 111 1 77 4444 4 4 2 8 3333333 8 4 1111111111111 1 8 9999 1111111111111 1 5 66666666666666666666666 1 6 111111 9 6666 55 33 66666666666666666 333333333333333333333 1 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . . . .......... . . .. .. .. . .. . ........ . .. . . .. . . ... ....... .. . .. ...... .. . . . . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ... . .. .... . . . . ....... . . ............. . . .... ............. . . ....................... . . ...... . .... .. .. ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 5 2 2 2 2 2222222222 8 2 77 00 55 5 33 0 77777777 3 22 3 7 33 0 3 000 7777777 00 7 55 111111 00 0 0 0 0 2 0 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 222222222 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 000 4 33 5555 0 0 5 0 0000000 0 4 2222222222222 9 4 2222 1111111111111 0 7 22222222222222222222222 0 8 888888 0 6666 88 88 66666666666666666 222222222222222222222 2 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACCATAATTCGTTAACAAGC--ATTCTATC---CTTTTAA--C-AAG-CA--TCNGA-TGAGAACACGCGGCTTGA-------AATAGAG-TCCAGCTATGCCTGAGTCTGATNTGTACTCACTTTTCGGCC-GACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCCN----TAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGGTATGTA---AACTTTAAATTCTGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGAAATTAAACCATAATTCGNTAACAAGCTCATTNTATCGTGCTTTTAA--C-AAG-CA--TCNGA-TGAGAACACGCGGCTTGA-------AATAGAG-TC--GCTATGCCCGAGTCT-ATNTGTACTCACTTTTCGGCC-GACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCCA----TAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGNTATATA---AACTCTAAATTCTGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA--CAAAG-TACTTCTAATTGAGAACTCA-GGCTTGA-------AAT--AG-TC--GCTATGCCTGAGTCT-ATGTGTACTCACTCTTCGGCC-GACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCCA----TAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA---AACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATACA-TT-GCATA-TAGT--------C-----TAA--CAC---AT-AC-----A-------AGAAT-AA-------------CA---CA-----AGGTAT
gi|11 : ttcaattgtATGAAAA--AAAC--TAATTCTTTA-CAAGC--ATTCTAT-------TCAA--C-AAG-CA--TCAGG-TAAGAACACGCAGCATGA-------ACTAAAG-TCCAGCTGTcaaatgcaagattaaatacttgtcccatgttgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC--TAATTCTTTA-CAAGC--ATTCTAT-------TCAA--C-AAG-CA--TCAGG-TGAGAACACGCAGCTTGA-------ACTAAAG-TCCAGCTGTTGCTGATTCT-agagctctgattcttc
gi|15 : tctttgT--ACGA-GCAC-CATT-------CATACA-TTGGCATGTTAGT--------C----ATAAAACACA--AGAAC-----Atc
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATACA-TTGGCATA-TAGT--------CATAAATAAA-CACA--ATAcacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTTTCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCATAATTCGGTAACATACTCATTATATCGTGCTTTTAA--CAAAG-TACTTCTAATTGAGAACTCA-GGCTTGA-------AAT--AG-TC--GCTATGCCTGAGTCT-ATGTGTACTCACTCTTCGGCC-GACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCCA----TAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA---AACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTTTCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACCA--ATTCG-TAACAAGC--ATTCT-------CTTAAA--C-AAG-CA--TCAGA-TAAGAACACACAGCTTGACAGCTGAAATAGAGGTCCAGCT------GAAGCTGATCT----CCACTTTT--GCC-GA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCGC----TG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG----AC-A-GCAC-CATT-------CATACA-TTGGTATG-AAGT--------C---A--AAACGACA--ATAAC-----A-------AGAAT-AA-------------CA---CA---ACAGGTAC-TA---AA--TTAAATTCTGTCCACTATATATACTAAATGAC-A--TACCATATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgACTTTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA-----------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATACA-TT
gi|5 : catgttgatcaccaaaatcttgtcattttttatctttcattaaagttgtttcttggcataaaattaaatttacaagtcataacaagcattctctttaacaagactattgctatataaaggattacacacaggctgtaaggaacgttctcctgaaattagagttccactgaagctgtgcgatcggccggAAAAAATT--TTCTTCTCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC--TAATCCATTA-CAAGC-AATTCT--C---CTTTTAATCC-AAGACA--TCTGA-TAAGAACACACAGCTTGA-------GATAGAG-TC---CTA-GCTCGAAGCTGATCT-TCCTTA--TTTTGCCC-GA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC-----T--GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTATTTA--TTG----AC-A-GCAC-AATT-------CATACA-TTGGCATA-TAGT--------C---AAT-AGCGAGAATATAAC-----AAAAG--GAAATTCAA-------------TAGTGC----ACATGTATGTAGTTGAGTTTCAGTAACGTATGATACATATACGAGGCGA-TGT---TCATAT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : tTTCAATTTATTG-AC-A-GCAC-TATT-------CATACA-TTGACATG-TAGTCATCAACAC---AATAAA--AAA--ATAACAACAAAGGGAATCAAATT-AAATTAAATACTGCCCA---CATGTACATGTATGTA---G--TTGGATTTCAGT--AACATATATA-TATATGTATACATAT-ACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATACA-TTGGCATA-TAGT--------C----AT-AATCACA--ATAAC-----G-------AGAAT-AA-------------CA---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 22222222 111111 11 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 222 11 2222 1111111 2222222222222 4444444444444 55555555555555555555555 1 222222 2222 11 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 99999999 999999 11 6 1 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 111 1 77 4444 4 4 2 8 3333333 8 4 1111111111111 1 8 9999 1111111111111 1 5 88888888888888888888888 0 2 111111 9 6666 55 33 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ........ ...... .. . . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ... . .. .... . . . . ....... . . ............. . . .... ............. . . ....................... . . ...... . .... .. .. ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 11111111 666666 00 7 0 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 000 4 33 5555 0 0 5 0 0000000 0 4 2222222222222 9 4 2222 1111111111111 0 7 11111111111111111111111 7 0 888888 0 6666 88 88 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGGTATGTA---AA-TTTAAATTCTGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTATGCCTGAG-TCTGATNTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGGTATGTA---AACTTTAAATTCTGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA---AACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATACA-TT-GCATA-TAGT--------C-----TAA--CAC---AT-AC-----A-------AGAAT-AA-------------CA---CA-----AGGTAT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATcaaatgcaagattaaatacttgtcccatgttgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|15 : tctttgT--ACGA-GCAC-CATT-------CATACA-TTGGCATGTTAGT--------C----ATAAAACACA--AGAAC-----Atc
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATACA-TTGGCATA-TAGT--------CATAAATAAA-CACA--ATAcacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA---AACTCTAAATTCTGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCT------GAA-GCTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG----AC-A-GCAC-CATT-------CATACA-TTGGTATG-AAGT--------C---A--AAACGACA--ATAAC-----A-------AGAAT-AA-------------CA---CA---ACAGGTAC-TA---AA--TTAAATTCTGTCCACTATATATACTAAATGAC-A--TACCATATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA-----------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATACA-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TC---------CTA-GCTCGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTATTTA--TTG----AC-A-GCAC-AATT-------CATACA-TTGGCATA-TAGT--------C---AAT-AGCGAGAATATAAC-----AAAAG--GAAATTCAA-------------TAGTGC----ACATGTATGTAGTTGAGTTTCAGTAACGTATGATACATATACGAGGCGA-TGT---TCATAT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : tTTCAATTTATTG-AC-A-GCAC-TATT-------CATACA-TTGACATG-TAGTCATCAACAC---AATAAA--AAA--ATAACAACAAAGGGAATCAAATT-AAATTAAATACTGCCCA---CATGTACATGTATGTA---G--TTGGATTTCAGT--AACATATATA-TATATGTATACATAT-ACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATACA-TTGGCATA-TAGT--------C----AT-AATCACA--ATAAC-----G-------AGAAT-AA-------------CA----A---A-GGGAAT-TA---AA--TTAGAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 222 11 2222 1111111 2222222222222 4444444444444 55555555555555555555555 33333333333333333 2222 11 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 111 1 77 4444 4 4 2 8 3333333 8 4 1111111111111 1 8 9999 1111111111111 1 5 88888888888888888888888 0 11111111111111111 6 8 6666 55 33 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ... . .. .... . . . . ....... . . ............. . . .... ............. . . ....................... . ................. . . .... .. .. ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 000 4 33 5555 0 0 5 0 0000000 0 4 2222222222222 9 4 2222 1111111111111 0 7 11111111111111111111111 7 44444444444444444 7 5 6666 88 88 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGGTATGTA----AA-T------TTAAATTC-TGTCCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGT--------C---AATAAACCACA--ATAAC-----AGAGA--CAGANT-AA-------------CA---CA---ACAGGTATGTA----AA-T------TTAAATTC-TGTTCAATATATATACTAAATGACTATCTATCATAT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA----AACT------CTAAATTC-TGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATACA-TT-GCATA-TAGT--------C-----TAA--CAC---AT-AC-----A-------AGAAT-AA-------------CA---CA-----AGGTAT-CA----AA-TGCAAGATTAAATACTTGTCCCATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|15 : tctttgT--ACGA-GCAC-CATT-------CATACA-TTGGCATGTTAGT--------C----ATAAAACACA--AGAAC-----Atc
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATACA-TTGGCATA-TAGT--------CATAAATAAA-CACA--ATAcacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGT--------C---AATAAACCA-A--ATAAC-----AGAGA--CAGACT-AA--------------A---C----ACAGCTATATA----AACT------CTAAATTC-TGTTCAATATATAT-C--AATGACTATCTATCATAT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG----AC-A-GCAC-CATT-------CATACA-TTGGTATG-AAGT--------C---A--AAACGACA--ATAAC-----A-------AGAAT-AA-------------CA---CA---ACAGGTAC-TA----AA--------TTAAATTC-TGTCCACTATATATACTAAATGAC-A--TACCATATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA-----------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATACA-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTATTTA--TTG----AC-A-GCAC-AATT-------CATACA-TTGGCATA-TAGT--------C---AAT-AGCGAGAATATAAC-----AAAAG--GAAATTCAA-------------TAGTGC----ACATGTATGTAGTTGAG-T------TTCAGTAA-CGTATGATACATATACGAGGCGA-TGT---TCATAT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : tTTCAATTTATTG-AC-A-GCAC-TATT-------CATACA-TTGACATG-TAGTCATCAACAC---AATAAA--AAA--ATAACAACAAAGGGAATCAAATT-AAATTAAATACTGCCCA---CATGTACATGTATGT-----AG-T------TGGATTTC-AGT--AACATATATA-TATATGTATACATAT-ACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATACA-TTGGCATA-TAGT--------C----AT-AATCACA--ATAAC-----G-------AGAAT-AA-------------CA----A---A-GGGAAT-TA----AA-T------T
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 222 11 2222 1111111 1111 44444 2222222222 33333333333333333 2222222 5555555555555555555555555555555555 1111 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 111 1 77 4444 4 4 2 8 3333333 8 4 5555 4 99 6666 66666 1 5 4444444444 66666666666666666 4 6 1111111 1111111111111111111111111111111111 7777 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ... . .. .... . . . . ....... . . .... . .. .... ..... . . .......... ................. . . ....... .................................. .... ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 000 4 33 5555 0 0 5 0 0000000 0 4 1111 6 22 4444 99999 0 7 7777777777 77777777777777777 0 7 7777777 0000000000000000000000000000000000 0000 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGTC---AATAAACCACA--ATAACA-A---AGAAT-AAC-A---CAACAGGTAT-TA----AA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-GCAC-CATT-------CATACA-TTGGCATG-TAGTC---AATAAACCACA--ATAACAGAGACAGANT-AAC-A---CAACAGGTATGTA----AA-T------TTAAATTC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGTC---AATAAACCA-A--ATAACAGAGACAGACT-AA--A---C-ACAGCTATATA----AACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATACA-TT-GCATA-TAGTC-----TAA--CAC---AT-ACA-----AGAAT-AAC-A---CA--AGGTAT-CA----AA-TGCAAGATTAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|15 : tctttgT--ACGA-GCAC-CATT-------CATACA-TTGGCATGTTAGTC----ATAAAACACA--AGAACAtc
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATACA-TTGGCATA-TAGTCATAAATAAA-CACA--ATAcacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCCTTTAACTTGGT--AC-A-G-ACGGATT-------CATACAGTTGTAGTG-CAGTC---AATAAACCA-A--ATAACAGAGACAGACT-AA--A---C-ACAGCTATATA----AACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTCATTA--TTG----AC-A-GCAC-CATT-------CATACA-TTGGTATG-AAGTC---AA--AACGACA--ATAACA-----AGAAT-AAC-A---CAACAGGTAC-TA----AA-T------T-AAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A--TAC---------CAT----ATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA-----------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATACA-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTATTTA--TTG----AC-A-GCAC-AATT-------CATACA-TTGGCATA-TAGTC---AAT-AGCGAGAATATAACAAAAGGAAATTCAAT-AGTGC-ACATGTATGTAGTTGAG-T------TTCAGTAA-CGTATG-------ATACATATA-------CGAGGCGA--TGT---T---------CAT----AT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : tTTCAATTTATTG-AC-A-GCAC-TATT-------CATACA-TTGACATG-TAGTC---ATCAA--CACA--ATAA-A-----AAAAT-AACAA---CAAAGGGAAT-CA----AA-TTAAA--TTAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATATATATATATGTATACATATACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATACA-TTGGCATA-TAGTC----AT-AATCACA--ATAACG-----AGAAT-AAC-A----AA-GGGAAT-TA----AA-T------T
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|13 ): AGATTTTCAGTTCAATTTATGGACAGCACCAGTAATTGACATGTAGTCAAAAATTTAAATACAACTTACTACAAAATAACAACGAGAATGAAATGG
Unaligned ( gi|14 ): TACAATTCAATTTATTGACACCATTCTTACATTAATTGACATGCAGTCATGAATTCAATCAAAATAACAACGAAAGCGAAATGAAATAGTCTAGAT
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 1111111 222222222 1111111 222222222222 11 22222222222222 11 1111111 33333333 1111111 5555555555555555555555555555555555 1111 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 5555555 666666666 3 3 0 6 0000000 7777 6 3 999999999999 2 00 3 55 55 55 5 22222222222222 22 9 2 0 5555555 88888888 777 8888888 1111111111111111111111111111111111 7777 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ....... ......... . . . . ....... .... . . ............ . .. . .. .. .. . .............. .. . . . ....... ........ ... ....... .................................. .... ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 5555555 000000000 6 6 4 7 8888888 1111 7 6 888888888888 1 11 6 00 00 00 7 66666666666666 66 4 5 8 4444444 22222222 444 6666666 0000000000000000000000000000000000 0000 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A-A---TAAC-ACAACGGGTA-----T-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A-A---TAAC-ACAACAGGTA-----T-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAA--AC-ACAGCTA-----TATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATAC----A-TT-GCATA-TAGTC------------TAA--CAC---A--T---AC-AAG--------A-A---TAAC-ACA--AGGTA-----T-CAAA-TGCAAGATTAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|13 : tctttgAGTTCAATTTA---TGG---AC-A-GCAC-CA----------GTA-----A-TTGACATG-TAGTC---A--AAAATTTAAA-TACA--ACTTACTACAA----------A-A---TA---ACAACGAGAA-----T-GAAA-T------tc
gi|14 : agattttcCAC-CATT-------CTTACATTAA-TTGACATG-CAGTC---ATGAAT---TCAATCAAA--A--TA--ACAACG--------A-A---gg
gi|15 : tacaattcaatttattgaT--ACGA-GCAC-CATT-------CATAC----A-TTGGCATGTTAGTC------A-----TAAAACACA--A--GA--ACAagcgaaatgaaatagtctagat
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATAC----A-TTGGCATA-TAGTCATAA--A-----TAAA-CACA--A--TA--cacagggaatttaattacatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAA--AC-ACAGCTA-----TATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTC-ATTA--TTG----AC-A-GCAC-CATT-------CATAC----A-TTGGTATG-AAGTC---A---------AAACGACA--A--TA--AC-AAG--------A-A---TAAC-ACAACAGGTA-----C-TAAA--------TTAAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A--TAC---------CAT----ATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA------------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATAC----A-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTA-TTTA--TTG----AC-A-GCAC-AATT-------CATAC----A-TTGGCATA-TAGTC---A--A-----T-AGCGAGAATA--TA--ACAAAAGGAAATTCA-A---TAGT-GC-ACATGTATGTAGT-TGAG-T------TTCAGTAA-CGTATG-------ATACATATA-------CGAGGCGA--TGT---T---------CAT----AT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : t-TTCAATTTATTG-AC-A-GCAC-TATT-------CATAC----A-TTGACATG-TAGTC---A--T-----CAA--CACA--A--TA----AAAA--------A-A---TAACAACAAAGGGAA-----T-CAAA-TTAAA--TTAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATATATATATATGTATACATATACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATAC----A-TTGGCATA-TAGTC------A-----T-AATCACA--A--TA--AC-GAG--------A-A---TAAC-A-AA-GGGAA-----T-TAAA--------TTAGATA---GTCCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 1111111 222222222 1111111 222222222222 11 33333333333333333333 1111111111111 33333333 1111111 5555555555555555555555555555555555 1111 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 5555555 666666666 3 3 0 6 0000000 7777 6 3 999999999999 2 00 3 55 55 55 11111111111111111111 4 6666666666666 33333333 777 8888888 1111111111111111111111111111111111 7777 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ....... ......... . . . . ....... .... . . ............ . .. . .. .. .. .................... . ............. ........ ... ....... .................................. .... ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 5555555 000000000 6 6 4 7 8888888 1111 7 6 888888888888 1 11 6 00 00 00 99999999999999999999 4 0000000000000 00000000 444 6666666 0000000000000000000000000000000000 0000 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACAACGGGNA-----T-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACAACGGGTA-----T-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACAGC---TA-----TATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATAC----A-TT-GCATA-TAGTC------------TAA--CAC---A--T---AC-AAG--------A---AT--AAC-ACAA--GGTA-----T-CAAA-TGCAAGATTAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|13 : tctttgAGTTCAATTTA---TGG---AC-A-GCAC-CA----------GTA-----A-TTGACATG-TAGTC---A--AAAATTTAAA-TACA--ACTTACTACAA----------A---AT--A---ACAACGAGAA-----T-GAAA-T------tc
gi|14 : agattttcCAC-CATT-------CTTACATTAA-TTGACATG-CAGTC---ATGAAT---TCAATCAAA--A--TA--ACAACG--------A---Agg
gi|15 : tacaattcaatttattgaT--ACGA-GCAC-CATT-------CATAC----A-TTGGCATGTTAGTC------A-----TAAAACACA--A--GA--AC---------------------AC-ACA--GGGAA-----T-TTAA-T------Tagcgaaatgaaatagtctagat
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATAC----A-TTGGCATA-TAGTCATAA--A-----TAAA-CACA--A--TA--acatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACAGC---TA-----TATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTC-ATTA--TTG----AC-A-GCAC-CATT-------CATAC----A-TTGGTATG-AAGTC---A---------AAACGACA--A--TA--AC-AAG--------A---AT--AAC-ACAACAGGTA-----C-TAAA--------TTAAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A--TAC---------CAT----ATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA------------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATAC----A-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTA-TTTA--TTG----AC-A-GCAC-AATT-------CATAC----A-TTGGCATA-TAGTC---A--A-----T-AGCGAGAATA--TA--ACAAAAGGAAATTCA---AT--AGT-GC-ACATGTATGTAGT-TGAG-T------TTCAGTAA-CGTATG-------ATACATATA-------CGAGGCGA--TGT---T---------CAT----AT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : t-TTCAATTTATTG-AC-A-GCAC-TATT-------CATAC----A-TTGACATG-TAGTC---A--T-----CAA--CACA--A--TA----AAAA--------A---AT--AACAACAAAGGGAA-----T-CAAA-TTAAA--TTAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATATATATATATGTATACATATACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATAC----A-TTGGCATA-TAGTC------A-----T-AATCACA--A--TA--AC-GAG--------A---AT--AAC-A-AA-GGGAA-----T-TAAA--------TTAGATA---GTCCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 1111111 222222222 1111111 222222222222 11 33333333333333333333 2222222 33333333 1111111 5555555555555555555555555555555555 1111 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 5555555 666666666 3 3 0 6 0000000 7777 6 3 999999999999 2 00 3 55 55 55 11111111111111111111 4 6666666 1 8 33333333 777 8888888 1111111111111111111111111111111111 7777 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ....... ......... . . . . ....... .... . . ............ . .. . .. .. .. .................... . ....... . . ........ ... ....... .................................. .... ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 5555555 000000000 6 6 4 7 8888888 1111 7 6 888888888888 1 11 6 00 00 00 99999999999999999999 4 1111111 0 9 00000000 444 6666666 0000000000000000000000000000000000 0000 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACA-ACG---GGNAT-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACA-ACG---GGNAT-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACA-GC------TATATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATAC----A-TT-GCATA-TAGTC------------TAA--CAC---A--T---AC-AAG--------A---AT--AAC-ACA-A-----GGTAT-CAAA-TGCAAGATTAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|13 : tctttgAGTTCAATTTA---TGG---AC-A-GCAC-CA----------GTA-----A-TTGACATG-TAGTC---A--AAAATTTAAA-TACA--ACTTACTACAA----------A---AT--A---ACA-ACG---AGAAT-GAAA-T------tc
gi|14 : agattttcCAC-CATT-------CTTACATTAA-TTGACATG-CAGTC---ATGAAT---TCAATCAAA--A--TA--ACAACG--------A---Agg
gi|15 : tacaattcaatttattgaT--ACGA-GCAC-CATT-------CATAC----A-TTGGCATGTTAGTC------A-----TAAAACACA--A--GA--AC---------------------AC-ACA---G---GGAAT-TTAA-T------Tagcgaaatgaaatagtctagat
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATAC----A-TTGGCATA-TAGTCATAA--A-----TAAA-CACA--A--TA--acatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACA-GC------TATATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTC-ATTA--TTG----AC-A-GCAC-CATT-------CATAC----A-TTGGTATG-AAGTC---A---------AAACGACA--A--TA--AC-AAG--------A---AT--AAC-ACA-ACA---GGTAC-TAAA--------TTAAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A--TAC---------CAT----ATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA------------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATAC----A-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTA-TTTA--TTG----AC-A-GCAC-AATT-------CATAC----A-TTGGCATA-TAGTC---A--A-----T-AGCGAGAATA--TA--ACAAAAGGAAATTCA---AT--AGT-GCACATGTATGTAGT-TGAG-T------TTCAGTAA-CGTATG-------ATACATATA-------CGAGGCGA--TGT---T---------CAT----AT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : t-TTCAATTTATTG-AC-A-GCAC-TATT-------CATAC----A-TTGACATG-TAGTC---A--T-----CAA--CACA--A--TA----AAAA--------A---AT--AACAACA-AAG---GGAAT-CAAA-TTAAA--TTAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATATATATATATGTATACATATACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATAC----A-TTGGCATA-TAGTC------A-----T-AATCACA--A--TA--AC-GAG--------A---AT--AAC-A-A-A-G---GGAAT-TAAA--------TTAGATA---GTCCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444 2222 1 11 44444444 1 111111 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 22 2222222222222 1 222222 2 111 11 222222 1 222222 1 111 222 111 222222222 1 1 111 11 22 222 1 2222 11 22222 11 1 1111111 222222222 1111111 222222222222 11 33333333333333333333 2222222 33333333 1111111 5555555555555555555555555555555555 1111 22222222222222222 444444444444444444444 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 3 1111111 3 5 2 33 0000 1 5 2 55 5 11111111 1 77 1 777777 77 1 222 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 00 7777777777777 0 777777 3 22 8 3 0 111 0 0 00 666666 5 8 5 555555 0 777 11 0 88 5 222 000 666666666 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 6 5 5555555 666666666 3 3 0 6 0000000 7777 6 3 999999999999 2 00 3 55 55 55 11111111111111111111 4 6666666 1 8 33333333 777 8888888 1111111111111111111111111111111111 7777 66666666666666666 111111111111111111111 8 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ....... . . . .. .... . . . .. . ........ . .. . ...... .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .. ............. . ...... . .. . . . ... . . .. ...... . . . ...... . ... .. . .. . ... ... ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. . . ....... ......... . . . . ....... .... . . ............ . .. . .. .. .. .................... . ....... . . ........ ... ....... .................................. .... ................. ..................... . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 2 4444444 6 0 1 11 9999 7 0 0 77 7 44444444 6 99 4 111111 99 0 444 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 44 0000000000000 4 222222 8 22 2 2 0 444 8 8 44 000000 6 0 0 666666 6 000 66 8 88 0 000 000 666666666 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 5 0 5555555 000000000 6 6 4 7 8888888 1111 7 6 888888888888 1 11 6 00 00 00 99999999999999999999 4 1111111 0 9 00000000 444 6666666 0000000000000000000000000000000000 0000 66666666666666666 666666666666666666666 8 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACA-ACG---GGNAT-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACA-ACG---GGNAT-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACA-GC------TATATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : ATTTAGTTGAC-A-GCAA-CATT-------CATAC----A-TT-GCATA-TAGTC------------TAA--CAC---A--T---AC-AAG--------A---AT--AAC-ACA-A-----GGTAT-CAAA-TGCAAGATTAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtATGAAAA--AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tttctttgATGAAAAT-AAAC---TAATTCTTTA-CAAG--CA-TTCTATT---C----AA--C-AAG--CA--T--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|13 : tctttgAGTTCAATTTA---TGG---AC-A-GCAC-CA----------GTA-----A-TTGACATG-TAGTC---A--AAAATTTAAA-TACA--ACTTACTACAA----------A---AT--A---ACA-ACG---AGAAT-GAAA-T------tc
gi|14 : agattttcCAC-CATT-------CTTACATTAA-TTGACATG-CAGTC---ATGAAT---TCAATCAAA--A--TA--ACAACG--------A---Agg
gi|15 : tacaattcaatttattgaT--ACGA-GCAC-CATT-------CATAC----A-TTGGCATGTTAGTC------A-----TAAAACACA--A--GA--AC---------------------AC-ACA---G---GGAAT-TTAA-T------Tagcgaaatgaaatagtctagat
gi|16 : aattcacgtctcgacaatttatt--AC-A-GCAC-CATT-------CATAC----A-TTGGCATA-TAGTCATAA--A-----TAAA-CACA--A--TA--acatgg
gi|2 : ttcaagtcaattcaatgATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATC-ATAATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAG--TACTT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACA-ACCTAAAGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTCC----ATAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---A--A-----TAAACCA-A--A--TA--ACAGAG--------ACAGACTAAAC-ACA-GC------TATATAAACT------CTAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATAATAGGTATTAT-----TAT--TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAACC-A--ATTCGT-AACAAG--CA-TTCT-------CTTAAA--C-AAG--CA--T--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AATG---AGAT---------AAG-GATT-ACACG----G-CTCGCAGTAACATC-AC--AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA------AAAACATACC---AAGGAT-GAAGATTTCA-----CAGAC---AAATTTA-TGGTG-TCG----CTG--ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA---TTC-ATTA--TTG----AC-A-GCAC-CATT-------CATAC----A-TTGGTATG-AAGTC---A---------AAACGACA--A--TA--AC-AAG--------A---AT--AAC-ACA-ACA---GGTAC-TAAA--------TTAAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A--TAC---------CAT----ATTGAAGTCACA-------ATGCATACTA---ATTA-----------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAATTTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--C-AAGACTA--TTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAATG---AGAT--AAGGT-----TTATTGAGGCGGCGTGTCTC-CAGT-ACGTC-AC--AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTA----TACTCACTAAAACATACC-ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTCTTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTACA------------TTTA--TTG----AC-ATGCAC-CATTGGGTGAACATAC----A-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTTTT------------GTGAAAAATAATC---TAATCCATTA-CAAG--CAATTCT--C---CTTTTAATCC-AAGA-CA--T--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAAT---GAGATAGGAT-TACA----------ACG------CTTAT----ACGTC-ACCA--AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGTC--T----AAACCTAC---AAGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTCC----T---GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTA-TTTA--TTG----AC-A-GCAC-AATT-------CATAC----A-TTGGCATA-TAGTC---A--A-----T-AGCGAGAATA--TA--ACAAAAGGAAATTCA---AT--AGT-GCACATGTATGTAGT-TGAG-T------TTCAGTAA-CGTATG-------ATACATATA-------CGAGGCGA--TGT---T---------CAT----AT----GC-----------ATACATA---------------------TGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : t-TTCAATTTATTG-AC-A-GCAC-TATT-------CATAC----A-TTGACATG-TAGTC---A--T-----CAA--CACA--A--TA----AAAA--------A---AT--AACAACA-AAG---GGAAT-CAAA-TTAAA--TTAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATATATATATATGTATACATATACAT----GT-ACACGTACGTATATATACCACGCATTATACACACATTATGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttaa--AC-A-GAGC-CATT-------CATAC----A-TTGGCATA-TAGTC------A-----T-AATCACA--A--TA--AC-GAG--------A---AT--AAC-A-A-A-G---GGAAT-TAAA--------TTAGATA---GTCCA-------
blockSeqs : T T C A C A A G T A G A ACA A C TAGGAGC A T A TT TTAC T T A CT A ATCGTGCT T TC A TACT TG A AT AG TT ACA GTAAGGAACGTTCTCC CAGCTGA TAG G CCACTGA GTTGCT GCT G GTA C C C C TG TGAATGTGCAAGT T GCGTGT A AA G T G CAA TT AATGTT T T G CTCACT T TAA TT TA G CTA TA CTTGTTAGT T CA G AT G C TAA T A CTT TA G ATT CC G TAC C CTTT C TT ATATA AC G G AGTTCAA ATTTAGTTG G T G GGGTGAA ATTA G T AAAAATT A AT C AT CT CT AAAAGGAAATTCAAT A CATGTAT T A TGCAAGA ACT CATGTAC AGTTGGATTTCAGTAACATATATATATATGTATA ATAC GTACACGTACGT CCACGCATTATACACACATTA A ACTA G A TAT A A A
blockSeqs : . . . . . . . . . . A A AAA A C T G T A TT CAT T T A . . ATTC A . . ACTA . A TA . . GC . . AA . CT ATGCCT TT G GGA C C C . . AGGATTACA G CTGT G AG A A . CA AA GA G . . CACA T AT TT T G A GT ATAGA . A . AC T . TA G A . . G AT C A . . . C . ATAAA A A . AGTTCC ATTTATTG . . . . . . . ATGAAT A AA C . . . AGAGACAGACTA . ACG A . TTAAA TC . CAATGACTATCTAT . TGAAGTCACA ATAGGTATTATTAT T . G C TG . . .
blockSeqs : . C T AC T T . C T G TT CA G T A . . ATTC T . . ACA . T G . . GC . . AA . C GTGC GT G TC T . T . . AAGGTT . G A AG . G . A CA A T . . T T A T T . . A CTG . A . . . . A . . . . . T . . . . . . . TCT C . . TTTA ACTTGGT . . . . . . . ATAAA C AC A . . . AAAAAAT . ACA A . CT TC . ACTAAATGACATAC . GTACA CTAATTA T . A A T
blockSeqs : . T . . . . . . T A AT T G T . . . CCT T . . CA . A G . . AC . . AG . C GTA AG G . . . . . . AAG . . . . . G . A A . . . . . . . T . . . A TG . . TTC TGG . . . . . . . AA A AC C . . . AAGAAT . AAG T . T AA . ACGAGGCGATGTT . GC . . . . . .
blockSeqs : . . T T A . . . . C . . . CA . T A . . AC . . AG . C G G . . TTG . . . . . . . AA A GC C . . . AAGAAT . GC T . T AC .
blockSeqs : . . . T A . . . . C . . . CA . T A . . A . . . . . C T TTG . . . . . . . AT A AT C . . . GAGAAT . AG A . T A .
blockSeqs : TTG . . . . . . . A A A G . . . AAAAT . A A . .
blockSeqs : . . . . . . . A A A C . . . . . G A . .
blockSeqs : . . . . . . . A . . C . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : T****** T*** ** ATTC**** ACA*** G** GC* AG* C****** ** AAGGTT******* ****** CA* C***** A** T* TGG****** AGTTCA* TTG****** AAGAAT************** AG***** T******* GTACA************
originalCons : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGAAAATTAAACC-ATAATTCGTTAACAAG--CA-TTCTATC---CTTTTAA--C-AAG--CA--T--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAATGTGCAAGTGATTTACACG-C-TGTCTTATAGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTA--CACAAAAACATACCTAAAGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCC----NTAGAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCC-TTTAACTTGGT--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAAG--------A---AT--AAC-ACA-ACG---GGNAT-TAAA-T------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----AT----GT-ACA-------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
finalCons : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTT------GGAATATGAAAATTAAACT---AATTCGTTAACAAG--CA-TTCTATTC----TTTAA--C-AAGACA---T--CNGG--TGA--GA--ACACGC-GGCT----------------TGA-------AATAG-AG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATG--GAGATAAGGTT-------GATTTACACG------CTTATAGTGACGTCGACCA-GAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTAC-----AAAACATACCA--AGGGAT-GAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTCCTGG------ATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCA-TTTATTG------AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---A--A-----TAAACCACA--A--TA--ACAAGAAT--------------AAC-ACAAG-----GGNAT-TAAAT-------TTAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TATCTAT---------CAT----ATGTACA------------ATGCATANTAGGTATTAT-----TAT--TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTCAATTTATTTATTGAAATACTATCCATACATTGCATGTAGACATAAAACCAATTATAGTCTATATGACAAATGTAGTTGAGTTGCATATTATAAACCTATCTAACATGTATATGACATATTTATACCTAACGTATGTACACACATACACTATATAAACTTTCA
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA
Alignments
lowQualScore : 4444444444444 111111 1 11 444444444 222 111 111 3333333333333333 1111111 111 2222222 222222 111 111 2 2222 66666666666666666666666666666 22222222 22222 11 222222 1 33333 1 22 2 222 111 555555555 1 1 111 11 22 222 1 2222 11 22222 11 1111 11 1 11 1111111 22222222222222222222222222222222222222 1111111 44444444444444444 1111111 55555555555555555555555555555555555555 1111 1111 2222222 111111111 555555555555555555 1111 111
lowQualScore : 7 7 6 7 6 7 7 6 7 0 0 8 3 6 666 6 6 1111111111111 2 33 888888 1 5 2 55 5 111111111 1 77 777 5 77 1 888 77 77 111 7777777777777777 8888888 222 5 6666666 555555 000 6 111 3 5 3 0 0 3333 22222222222222222222222222222 33333333 3 33333 0 0 00 666666 5 8 3 66666 0 22 8 4 0 88 5 222 000 8 444444444 8 88 5 44 8 0 333 9 3 777 33 2 333 55 6 111 0 1111 2 88 00000 88 4444 55 2 11 88 3 3 2 6 0000000 6666 6 3 22222222222222222222222222222222222222 7 3 4444444 1 3 7 11111111111111111 1 55 6666666 11111111111111111111111111111111111111 4444 4444 6 6 1111111 999999999 999999999999999999 7 7777 0 3 5 777 7 7 7
lowQualScore : . . . . . . . . . . . . . . ... . . ............. . .. ...... . . . .. . ......... . .. ... . .. . ... .. .. ... ................ ....... ... . ....... ...... ... . ... . . . . . .... ............................. ........ . ..... . . .. ...... . . . ..... . .. . . . .. . ... ... . ......... . .. . .. . . ... . . ... .. . ... .. . ... . .... . .. ..... .. .... .. . .. .. . . . . ....... .... . . ...................................... . . ....... . . . ................. . .. ....... ...................................... .... .... . . ....... ......... .................. . .... . . . ... . . .
lowQualScore : 3 3 7 3 7 3 3 7 3 2 2 0 2 0 444 0 7 5555555555555 1 11 999999 7 0 0 77 7 666666666 6 99 777 7 99 0 666 99 99 444 9999999999999999 6666666 444 7 4444444 333333 111 7 222 2 0 2 0 8 0000 66666666666666666666666666666 22222222 2 00000 8 8 44 000000 6 0 2 88888 6 00 0 0 8 88 0 000 000 0 444444444 0 88 0 00 8 0 555 2 2 555 88 5 555 00 5 000 0 2222 5 55 55555 22 8888 33 3 55 55 1 1 8 2 0000000 5555 2 3 22222222222222222222222222222222222222 3 6 1111111 0 6 3 33333333333333333 0 11 2222222 22222222222222222222222222222222222222 2222 2222 7 7 7777777 888888888 777777777777777777 5 0000 8 2 6 000 3 3 3
consensus : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTT------GGAATATGAAAATTAAAC--T---AATTCGTTAACAAG--CA-TTCTAT----TCTTTAA--CAAG--AC-AT--CNG-A-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAATGTGGAGATTGAAGGTGCAAGTGATTTAC-AC-GCTGTCTTAT----AGTGACGTCGACCAAGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTACACAAAAACATACCTAA-AGGGATTGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCA-TTTA--TTG--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---AA-----TAAACCACAA--TA--ACA-----AGA-AT-AAC-AC-AA-G-GGNA-T-TAAA-T------T--------TAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TAT--C--TAN---------CGT----AT----G-T-ACA-------ATGCATACTAGG---TATTAT-----TAT---------TGGTAAACTTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
Reference ( family-1690 ) : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTT------GGAATATGAAAATTAAAC--T---AATTCGTTAACAAG--CA-TTCTAT----TCTTTAA--CAAG--AC-AT--CNG-G-TGA--GA--ACACGC-GGCT----------------TGA-------AAT-AGAG-TCC------AGCTGTGCCTGAG-TCTGATCTGTACTCACTTTTCGGCCGACTCTTTAA--TGGAGAT--AAGGT-----TGATTTAC-AC-G----CTTAT----AGTGACGTCGACC-AGAAGATTAATAAAGCGA----ATCTGGCTG-CTACGAGTAC---AAAACATACC--A-AGGGA-TGAAGATTTTAT-CAGCAAAC---AAATT-A-TGGTGCTC-C-T-----GGATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCAC-ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAGATNTATTCACATTGCAGTCAAAGTTCA-TTTA--TTG--AC-A-GCAC-CATT-------CATAC----A-TTGGCATG-TAGTC---AA-----TAAACCACAA--TA--ACA-----AGA-AT-AAC-AC-AA-G-GGNA-T-TAAA-T------T--------TAAATNC-TGTCCA-------ATATATATA-------CTAAATGAC-TAT--C--TAT---------CAT----AT----G-T-ACA-------ATGCATANTAGG---TATTAT-----TAT---------TGGTAAACNTTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|1 : ATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCAT---AATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAGTAC-TT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTAC-AC-GCTGTCTTAT----AATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTACACAAAAACA-ACCTAA-AGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGTAC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---AA-----TAAACCA-AA--TA--ACAGAGACAGA-CTAAAC-AC-A----GCTA-TATAAACT------C--------TAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TAT--C--TAT---------CAT----AT----G-T-ACA-------ATGCATAATAGG---TATTAT-----TAT---------TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCA
gi|10 : A-TTTAG-TTG--AC-A-GCAA-CATT-------CATAC----A-TT-GCATA-TAGTC----------TAA--CAC-A--T---ACA-----AGA-AT-AAC-AC-AA---GGTA-T-CAAA-TGCAAGAT--------TAAATACTTGTCCC-------ATGT
gi|11 : ttcaattgtTTCTT------TGA---TGAAAA--AAAC--T---AATTCTTTA-CAAG--CA-TTCTAT----TC---AA--CAAG---C-AT--CAG-G-TAA--GA--ACACGC-AGCA----------------TGA-------ACT-AAAG-TCC------AGCTGTA---GAGCTCTGATtgtagttgaaattaatgaagtacgaattacat
gi|12 : tATGAAAAT-AAAC--T---AATTCTTTA-CAAG--CA-TTCTAT----TC---AA--CAAG---C-AT--CAG-G-TGA--GA--ACACGC-AGCT----------------TGA-------ACT-AAAG-TCC------AGCTGTTGCTGAT-TCTtcttc
gi|13 : tctttgAGTTCAATTTA--TGG--AC-A-GCAC-CA----------GTA-----A-TTGACATG-TAGTC---AAAAATTTAAA-TACAACTTACTACA-----A-A-AT-AAC-A--AC-G-AGAA-T-GAAA-T------tc
gi|14 : agattttcAATTCAATTTA--TTG--AC-A----C-CATT-------CTTACATTAA-TTGACATG-CAGTC----A-----TGAATT-CAA--TC--AAA-----ATA-AC-AAC-GA-AA-GCGAAA-T-GAAA-T------gg
gi|15 : tacA-TTTA--TTT--ACGA-GCAC-CATT-------CATAC----A-TTGGCATGTTAGTC----A-----TAAAACACAA--GA--AC--------------AC-AC--A-G-GGAA-T-TTAA-T------T--------agtctagat
gi|16 : aattcacgtctcgacaAAGTCAA-TTCA--ATG--AC-A-GCAC-CATT-------CATAC----A-TTGGCATA-TAGTCATAAA-----TAAA-CACAA--TA--acatgg
gi|2 : ttcATGTCAAACTTTCACTAGACTTGTTTGGTTCTAGGACAGTAAACTCACACACAAGTGTCGAACTCATAAGAAACTTTTTGAGCGACAGTGTGACTATAAGAAACTCATTTTTT-TCTCCGAACACAGATTTCTTCTTAGGAGCGGAATATGGATATTCAATCAT---AATTCGGTAACATACTCA-TTATATCGTGCTTTTAA--CAAAGTAC-TT--CTA-ATTGA--GA--ACTCA--GGCT----------------TGA-------AAT---AG-TC--------GCTATGCCTGAG-TCT-ATGTGTACTCACTCTTCGGCCGACTCTTTAATGTGGAAATTGAATGTGCAAGTGATTTAC-AC-GCTGTCTTAT----AATGACTTCGACCAAGAAGATTAATTAAGCGA----ATCTGGCTG-CTACGAGTACACAAAAACA-ACCTAA-AGGGATTGAAGATTTTAT-CAGCAAGC---AAATT-A-TGGTGCTC-CATA----GAATGA-A-ATTGTAGAATCGCA-TAATAAAATTTTCGAACAC---TTGATT--AGAAATGATTGCA--ATCAGATGTACTGAAA-TA----GATCTGAAGCTGATGTATTGAAAG-TCT-TTCA-ATTGCAGTCAAAGTTCC-TTTAACTTGGTAC-A-G-ACGGATT-------CATAC----AGTTGTAGTG-CAGTC---AA-----TAAACCA-AA--TA--ACAGAGACAGA-CTAAAC-AC-A----GCTA-TATAAACT------C--------TAAATTC-TGTTCA-------ATATATAT--------C--AATGAC-TAT--C--TAT---------CAT----AT----G-T-ACA-------ATGCATAATAGG---TATTAT-----TAT---------TGGTAAACATTCATT----AATTTAATTGCACTAAATATG-TTTGGAGTTAATTTAATTTTAAAATGTGGAGTCATCAta
gi|3 : AAATTTCAC---ACTTGTC-GGTC-----AAAGTA---TCCCA---AAGTGTCAG---CATAAA-------TTAAAGGACA-TGTGAC----ACAAAATCATTTTTT-TCTCCAAAC---GATTTCTT----------GGATA---AAATTAAAC--C---AATTCGT-AACAAG--CA-TTCT-------CTTAAA--CAAG---C-AT--CAG-A-TAA--GA--ACACAC-AGCT----------------TGACAGCTGAAAT-AGAGGTCC------AGCTG-----AAG--CTGATCT----CCACTTTT--GCCGA-TCTT-AA--TG-AGAT--AAGG--------ATT-AC-AC-GG---CTCGC----AGTAACATCA--C-AGA-GATTAA-AAAGC-A----ATCGGACT---CAC-AGTA----AAAACATACC--A-AGG-A-TGAAGATTTCA-----CAGAC---AAATTTA-TGGTGTCG-C-T-----G-ATGA-A---T-TAGA--C-CA-TAA--AAATTT--GAAC-C---TTGATT--A-AAATAAT-GCACCATTAAATG-----AAACTA----GATCTGAAGCTGATGTA---AAAGATATATTCACATT-CA-TCAA--TTCA-TT-A--TTG--AC-A-GCAC-CATT-------CATAC----A-TTGGTATG-AAGTC---AA-------AACGACAA--TA--ACA-----AGA-AT-AAC-AC-AACA-GGTA-C-TAAA--------T--------TAAATTC-TGTCCA-------CTATATATA-------CTAAATGAC--A------TAC---------CAT----ATTGAAG-TCACA-------ATGCATACTA------ATTA------------------TGGTAAAC-TTCATT----AATCTAATTGCCATCAATA---TTTGGAGTT--TTT-ATTCTATA----GGACTCATC
gi|4 : catgTCATTTTTTATCTTTCATTAAAG-TTGTTTCTT------GGCATA---AAATTAAAT--TTACAAGTCAT-AACAAG--CA-TTCT-------CTTTAA--CAAG--ACTATTGCTATA-TAAAGGATTACACACAGGCTGTAAGGAACGTTCTCCTGA-------AATTAGAG-TTCCACTGAAGCTGTGC--GA--TCGG--CCGGACT---TTTCCGCCCGA-TCTTTAA--T-GAGAT--AAGGT-----TTATTGAG-GCGG----CGTGTCTCCAGT-ACGTCA--C-AGAAGATTAAAAATGCAATGTTGTCTTG-TGTCTATACTCACT--AAAACATACC--ATCGCGATTGA--ATTTTTT-CAGCAGACCTAAGGTT-A-TGGTGCTCTC-TTGTTAGTATGATACATT-TATGACCTTACTAATA-----TGCTGATACCTTCTGATTTAAGAAATA--TGCAC-ATTA-ATA---TGAGA-TACTTTGACTTGAAG-TGATGTA--GATAGATAAATTT-CATTA-----------CA-TTTA--TTG--AC-ATGCAC-CATTGGGTGAACATAC----A-TT
gi|5 : catgttgatcaccaaaatcttgAAAAAATT--TTCTTC-TCTTCTA-CAC-GTTTTCTT-TT------G-----TGAAAAATAATC--T---AATCCATTA-CAAG--CAATTCTCC----T-TTTAATCCAAG--AC-AT--CTG-A-TAA--GA--ACACAC-AGCT----------------TGA-------GAT-AGAG-TCCT-----AGCT-----CGAA-GCTGATCT-TCCTTA--TTTTGCCCGA-TCTTTAA--T-GAGAT--AGGA----------TTACAAC-G----CTTAT--------ACGTC-ACC-A-AAGAT--ACAAAGC------ATC--ACTG-CTAC-AGT-C---TAAACCTA-C--A-AGGGA-TGAAAATTACATACA--AAACA--AAATT-GTTTGTGCTC-C-T------GATGA-A-ATtg
gi|6 : gtactcTCAA--TTTA-TTTA--TTG--AC-A-GCAC-AATT-------CATAC----A-TTGGCATA-TAGTC---AA-----T-AGCGAGAA--T---------------AT-AAC-AA-AA-G-GAAA-T-TCAA-T-----------------AGTGC--------------ACATGTATG--------TAGTTGAG-TTT--CAGTAA---------CGT----AT----GAT-ACA----------TATACGAGGCGATGTTCA-----TATGCATACATATGATAAACTTTCATTACTAAGTTTA--TAAACT-AACAT--TTTGAAGTa
gi|7 : tAATTCAATTTA--TTG--AC-A-GCAC-TATT-------CATAC----A-TTGACATG-TAGTC---AT-----CAA--CACAA--TA--A-A-----AAA-AT-AACAACAAA-G-GGAA-T-CAAA-TTAAA--T--------TAAATAC-TGCCCACATGTACATGTATGTAGTTGGATTTCAGTAACATAT--A--TATATATGTATACATATACAT----G-T-ACACGTACGTATATATACCACG---CATTATACACACATTA-------TGGTAAACTTTCATT----TAATTAATT-CACTATCTATATTTTGGAGTcttgaaatcttttccgatattaaaacactaatttaagaagttatatatttttggagcaatttccattatt
gi|8 : aattcattttTCAA--TTCAAGTTA--TTG--AC-A-GAGC-CATT-------CATAC----A-TTGGCATA-TAGTC----A-----T-AATCACAA--TA--ACG-----AGA-AT-AAC-A--AA-G-GGAA-T-TAAA--------T--------TAGATA---GTCCA-------
gi|9 : tTCAA--TTTA-TTTA--TTG--A--A-ATAC-TATC-------CATAC----A-TT-GCATG-TAGAC----A-----TAAAAC-CAA--TT--ATA-----GTCTAT-ATG-AC-AA-A-TGTAGT-TGAG-T------TGCATATTATAAA-CC-TATCTA-------ACATGTATA-------TGACATATT-TATACC--TAA---------CGT----AT----G-T-AC--------ACACATAC--------ACTAT-------------------ATAAACTTTCAcctgcatgtagttataatattgaccaattagactacattgacttctaaactcaagcatatcattcagggtctaattactaaattaggagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CATATACATGTATATAAGTTGAAATGTATTACATATATATATATATATATATAGATATGTACA