lowQualScore : 1111111111111111111111111111
lowQualScore : 44444444 33333 11 1 22222 11111 1 1 1111111 1111 11111 111111 555555555555555555555555555 1 33333 111 11111111 111 1 1 1 11 1 1 3333333333 1 555 1 1 111 2 1 1 111 2222222222222222222222222222 222 1 666666666666666666666666666666666666666666666666666666666666666666 1 11 2 1 111 11 1111
lowQualScore : 6 00000000 66666 33 8 88 6 6 44444 11111 0 4 6 55 0000000 55 3 3 55 1111 77777 3 3 3 444 000000 0 111111111111111111111111111 3 3 3 6 1 00000 3 3 2 3 55 3 000 22222222 3 4 999 0 5 2 0 0 00 3 3 3 0 4 11 4 7777777777 0 2 6 222 7 3 99 3 66 000 8 0 5 0 2 2 999 0000000000000000000000000000 3 4 111 5 2 4 666666666666666666666666666666666666666666666666666666666666666666 5 00 0 5 3 1 7 8 6 3 8 8 666 44 5 88 4444 0 3
lowQualScore : . ........ ..... .. . .. . . ..... ..... . . . .. ....... .. . . .. .... ..... . . . ... ...... . ........................... . . . . . ..... . . . . .. . ... ........ . . ... . . . . . .. . . . . . .. . .......... . . . ... . . .. . .. ... . . . . . . ... ............................ . . ... . . . .................................................................. . .. . . . . . . . . . . ... .. . .. .... . .
lowQualScore : 0 00000000 22222 88 0 66 0 0 22222 77777 8 0 8 55 3333333 55 6 6 00 4444 77777 6 6 6 111 555555 5 888888888888888888888888888 3 3 3 7 9 88888 6 6 8 6 00 6 444 11111111 6 0 333 7 0 2 0 0 88 0 2 0 0 5 55 5 2222222222 0 5 0 555 0 2 00 2 88 888 0 0 8 6 0 8 555 5555555555555555555555555555 0 0 555 5 5 0 000000000000000000000000000000000000000000000000000000000000000000 5 00 0 0 7 0 3 0 0 2 0 0 222 22 6 88 8888 8 0
consensus : GTCAAAATCCAAATACACTTAAA-TCGAT--GTTGTTT----AAT--TTGCGTA-ATAGGAAAATTTTATGTAACATAT--GTAAATTTCTT-G-AAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGT-----T-----TA--------------AT-G-TT-TAT-TTTTCTCTACACTCTG---T-TA-TA-TGC-AA--AGTA-T---ATG--------AGAAT-AAATTGAT-TGAT--ATTGATTGATGAAGCAAACTATAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTANTTGATATNTTTTA-CTTCTTCTATACAGT---AA-AACACAGTT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATC-CTCATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTNGACNGTACTCTTAGTGAACTCTTNANAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTCTTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCCAATAGGNATTTAAAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
Reference ( gi|1 ) : GTCAAAATCCAAATGCACTTAAATTCAAT--GTTGTTT----CAT--TTGCATA-ATAGGAAAGTTTT-TGTAACATAT--GTCAATTTCTT-A-AAGTAATAACGGAGAGAGT-CTGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGT-----T-----TA--------------AT-G-TT-TAT-TTTTCTCAACACTCTG---TCTA-TA-TGC-AA--AGTA-T---ATG--------AGAAT-AAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGACATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTTTTCTATGCAGC---AA-AA-ACAATT-ACATGGAAGACGAGAT---GAAATCTTGCTTACAGC-AACATAATC-TTCATTCCCTGCAGTTTTCA-AACACGTAATTAACTTATCTACTGAACAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGACTTTTATTGAATTGGCATAGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCACATCCAATAGGAGTTT-AAAGAAAAGCAGGGCGTTGTTTTCGCACTCAATCGATGGT-ATATCACAACTATCTA-CAA-CAACAAAAAATATTTCACAACTTA-TTTTTCA---TATGTTTTATTTCATTCCTCTAAATAAAAATCA
gi|5 : GTCAAAATCCAAATACACTTAAA---AATATGTTGTTT----AAT--TTGCATA-ATTGGAAAATTTTATGTAACATATATGTAAATTTCTTGA-AAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----C--ATC--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATTT-A-C-A------CAGCTG------------TA--------------AC-G-TT-TAT-ACTTCTCTACACTCTG-----TA-TA-TGC-AA--AGTA-T---ATG--------AGAAT-AAATTGAT-
gi|6 : ttgtacaatctttgacaaatcaatagaaatagtgaattactggtatgtttgattcttccaaaggaacaaattacagaattttaaagaaggaattggcttttgaacagtattttagtatattaccataaaaaacccattcaaacacatacaacgaatcacaaattaccgacttaaaccggatgctggcaaaataaaccacgacaaaatagaatttgcaccatgtgcaaccatgaaataggcgacgagtatcattattcacatgtaaagatacagaaattgccgattgtagaaaaaaacttattccaaactactatcGTCAAAATCCAAATACACTTAAA--------GTTGTTT-----AT--TTGCATA-ATAGGAAAATTCTATGTAACATGT-------TTTCTT-G-AAGTAATAATGGAGAG--C-CGGTTCTCCAGGCTGATAAG----------------------C-TG-TAC--ATG----CATTTATT-TAT-ATATCTAA-T-AACCGTTCAGTTGT-----C-----TATG------------AT-G-TT-TATATTTTCTCTACACTCTG-----TA-TA-TGC-AA--ATGA-TTA-GTT--------AGAAT-AAAATGATCTGAT
gi|9 : tgatatgtttggttcttccaaaggaacaaagtacagaatttttaagaaggaattggcttttgaacaatatttttgtatattacctaaaaaaaatcaaacacattttgtatattcagaacaacgaatcataatttaccgaatggcaaaatataccacgacaaaagagaatgtgtaccttgtccaactatgaaataggcgacgagtatcattactgatatagaaattgcaaattgtaggaaaaaacttattccaaactatactatcTAAAATTGAT--GTTGTTTAGTCCGTGGTTGTGCACATAGGAAAATTTT-TATATAGCAT--GTAAATTTCT--G-AAGTAA------AAAGGGTTCAGTTCTCCAGGTTGATAAGA--TGTA----T--ATTTAACTC-TGCTAC--ATAATGCCAT----T-TTT-ATATTT-A-T-A------CA--TGT-----T---------------------AT-G-TTATAT-TTGTATT-ATATTCAG---AGTA-CA-T--------GTA-T---ATG--------AGAAT-AA--TAAC-TGA
gi|3 : aAAATTCAAT--GTTGTTT----AAT--TTGCATA-ATAGGAAAATTTT-TGTAACATAT--GTAAATTTCGT-A-AAGTAATAATGGAGAGAAT-CAGTTCTCCAGGTTG-----------A----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGATGT-----T-----CAAATAACAATATTATAT-G-TT-TAT-TTTTCTCAACACTCTG---TCTA-TT-TGC-AA--AGTA-T---ATG--------AGAAT-AAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTAAAAT
gi|8 : TA-ATAAGAA-------TGTA-CATAT---TCACCTTTGC-ACAAG-AATAA---AAAGGGT-CAGTTCTCCAGGTTGATAA-A--TGTA----T--ATT--ACTC--G-TAC--ATGC---CATT---T-TATCATATGT-A---A------CAGTTGT-----T---------------------AT-GATT-TAA-T-------ATACTATGATATTTATTA-TTCAAA--AGTACT---ATGAAATATGCAGAATGAAACTGAC-TGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcttggcatttgtgtgtatctgtattctatctaattgatattttttaattcttatatacagtaaaacacaactacatggaagacgaaataaaatcatgattacagcaaaatgattctccgcagctttcaaacaggtcattaactactgaacaaggcaaatgacgtttataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|13 : cactcaaaaatttcgatgtcgtttaaaaattctgcaaacaaacagagaataaaataataaaccAT--GCAAATTTCGT-G-AAGTAATGGTGGAGAGAGC-AAATTCTCCAGGTTGATAATA--TTTA----T--ATT--ACTC-TG-TAT--ATG----CA-----T-TAT-ATATTT-A-T-A------GAGTT-C-----T-----TAT-------------AC-G-TC-TAT-ATTTCTCTACACTCTG-----TA-TA-TAC-AA--AGTA-T---ATA--------AAAAT-GAATTGAT-acat
gi|16 : CTT-G-AAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGAAGTGTA----TTAATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGT-----T-----AC--------------AT-G-TT-CAT-TTTACTCAACACTCT
gi|14 : -AAGTAATAATGAAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTG----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-GTATCT-A-T-A------CATTTGT-----T-----AC--------------AT-G-TA-TAT-ATTTCTCTACACTCTG-----TA-TA-TGC-CA--AGTA-T---ATG--------TGAAT-AA
gi|15 : aaatatttatgtatcagAATGATGGAGAGAGT-CAGTTC---AGGTTGATAAGA--TGTACATAT--ATT--ACTC-TG-TAC--ATG----GA-----T-TAT-ATATGT-A-T-A------CAGTTGT-----T-----AC--------------AT-G-TT-CAT-ATTTATCTACACTCTG-----TA-CA-CGC-AA--AGTA-TATAATG--------AGAAT-AAATTGAC-TGAT
gi|24 : AGAGT-CAGTTCTCCAGGTTGATAAGA--TGT
gi|2 : atgatac--ATT--ACTCCTG-TACTCATG----CA-----T-TAA-A-ATCT-ACT-A------CGTTTGT-----TAATGTTA--------------ATTG-TT-TATGTTTTC---ACACTC-G---TTTA-TA-T-C-AA--AATA-T---ATG--------A-AAT-AAATTGAT-TGA------AATTGATGAAGCAAACTATAAAA
gi|17 : gTC-TG-CAC--ATA----CA-----TCTAT-ATATCT-A-TGA------CAATTGTAACAGT-----TT--------------AT-G-TT--AT-TTCTCT----ACGCTG---TATA-AAATGC-ATTTATTA-T---ATG--------AGAAT-AAATTGAT-Tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|23 : -----T-----TAT-------------AT-G-TT-TAT-TTTTCTCAACACTCTG---TCTA-TA-TGC-GA--AGTA-T---ATG--------AGAtcaaggatt
gi|7 : g---ATG--------AGAAT-AAATTG---------ATTGATTGATGAAGCAAACTATAAAA
gi|3 : TTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-ATTCTTATATACAGT---AA-AACACAACT-ACATGGAAGACGAAAT---AAAATCATGATTACAGC-AAAATG-------ATTCTCCGCAGCTTTCA-AACAGGTCATTAA-----CTACTGAACAAGGCAAATGACGTTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcttggcatttgtatgtatctgtattctctctacttgatatgttttactttttcaatacagtgaaacacagttacatggaagacaaaataatgaaatcatgcttgcagctaaatgatcctcattccctgcagttttcaaacaggtcattaacgtatttactgaataaggcaaa
gi|4 : aaattcaatgttgtttaatttgcataataggaaaatttttgtaacatatgtaaatttcgtaaagtaataatggagagaatcagttctccaggttgatattactctgtacatgcattatatatctatacagatgttcaaataacaatattatatgtttatttttctcaacactctgtctatttgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcTTAACATTTGTGT-GTATCTGT-ATTTT-ATCTAATTGATATTTTTTA-CTTGTTCTATACAGT---AA-AACACAATT-ACACGGAAGACGAAATAATGAAATCATGCGTACAAC-AAAATGATC-CTCATTGTCCGCAGTTTTCA-AACAGGTTATTAACTTATTTACTGAATAAAGCAAATGACGTTAtataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|7 : agaaaaacaggatgtatttaagacaattaatgtcTTGGCATTTGTAT-GTATCTGT-ATTCT-CTCTACTTGATATGTTTTA-CTTTTTCAATACAGT---GA-AACACAGTT-ACATGGAAGACAAAATAATGAAATCATGCTTGCAGC-TAAATGATC-CTCATTCCCTGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAAataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|2 : atgagaataaattgattgattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcTTGGCATTTGTACAGTATCTGTTATTCTCGTCTACTTGA-ATGTTTTAGCTTCTTTCAT-CAGTGTGAATAC-ACAGTTTACATG-AAGACAAAATATAGAAATCATGCTTGCAGCTAAAATGATCCTTCATTCC-TGCG--TTTCAGAACA-GTCATTAACGTATTTACTGAATAAGGC
gi|21 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcTGCTTATA----ATGTGATC-TACATTTCCTGCAGTTTTAA-AACAAATTATTAACATATctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|22 : aGAATAAGGCAAATGACGTTt
gi|4 : GTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTGGACAGTATTTTTAATGAATTCTTCAAAGTgataacttgtttgttaccagctcttcgcagta
gi|2 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaaTTGAATCTTATTGAAT------AGT----TTCCT----------TTTTGATTATACTC---GTGA-CTCTTGATAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTCTTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCC-ATAGATATTTAAAAGAAAAGGAAGGCGTTGCTTTCGCAC-CAAACGATGGTAACATCA-AA-TATCTATCAA-C--CAAAAAAAGTTTCAC-ACTTA--TTTTAA---TA-GATCTATTTCATTtttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|4 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGTGTTGCTTTCCCACTCAATCGATGGT-ACATCACAGTTATCTA-CAA-CCAAAAAAAATGTTTCAAAACTTA-TTTTTCA---TGTGTCTTATTTCATTCCTCTAAATAAAAATC
gi|10 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgGAAAAGGAGGAAGTTGTTTTCGGACTCAATCAATGGT-ACATCACATCTATCTA-GAACCAAAAAAAAATGTTCCACAATTTA-TTTTTC-----ATGTCTTATTTCATTCCACTAAACAAAAATCAtgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|11 : tgAATCGATGGT-ACATCACAACTATCTA-CAG-CAAAAAAAAGT----------TTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCAgtggataactgacaatgatttaattttatttgttacaggcaatatggcaaaatggtccggttccagtataaaacagcgtga
gi|12 : TGGT-ACATCACAACTATCTA-CAA-CCAAAAAGAAAGTTTCACAACTAATTTTTTCATATTATGTCTTATTTCATTCCTCTAAATAAATATCAgtggttagtgcgtgataactgactataatttaatttaacttgttacaggcaatttggcaaaatggtccagttccggaataaaacaaacatga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGGACATAATAGAATTTGTACCTTATTTAACTGTGAAATAAGTGACCAGTATACAGAGGAAAACTGATCCCCAGTTATTATCGTCAAAAACCAAATTTACCTAAA
Unaligned ( gi|19 ): GTTTTACAATCTTTGACAGATCAGTGATCTGTTTGATTCTTCCAAAGGAACAAAGTACAGAATTTTAAAGAAGGAATTGGCTTTTGN
Unaligned ( gi|20 ): ATTGAATCTAAGAAATTGCGTTTATAACGAATAAAAATTGTTCGTCCCAAGCATTTCGCTTTGAGTGTACTTTATCGTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 222222222222 111 1111 111111 11 1111 1111 11111 444444444444444444444 1111 222 222222 111 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 11 1 33333333333333333333333333 1 1 1 2 111
lowQualScore : 55555555 666666666666 3 888 4444 999999 44 0 77 5 0000 4 0 3 55 8888 55 55 3 3 44 0000 66666 3 3 3 3 3 999999 333333333333333333333 6 3 3 2222 33 666 1 44 3 999 3 555555 8 8 8 1 0 1 8 1 3 444 8 777 1 6 6 6 6 1 9 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 44 888888 00 2 1 11 0 88 0 88 1 1 66666666666666666666666666 0 3 0 7 1 3 0 3 6 1 6 6 1 222 3 6 111
lowQualScore : ........ ............ . ... .... ...... .. . .. . .... . . . .. .... .. .. . . .. .... ..... . . . . . ...... ..................... . . . .... .. ... . .. . ... . ...... . . . . . . . . . ... . ... . . . . . . . ..................................................................................................................................................... .. ...... .. . . .. . .. . .. . . .......................... . . . . . . . . . . . . . ... . . ...
lowQualScore : 77777777 000000000000 3 333 2222 222222 00 1 99 7 6666 4 7 6 00 5555 00 00 3 3 66 4444 22222 3 3 3 3 3 666666 999999999999999999999 2 1 1 5555 99 888 8 66 3 666 6 777777 0 0 0 0 8 0 0 4 8 000 0 444 0 7 7 3 7 0 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 333333 77 3 0 77 7 00 7 00 0 0 33333333333333333333333333 7 3 7 3 0 7 2 2 7 0 7 7 0 000 2 7 777
consensus : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTTAAA-GAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
Reference ( family-1670 ) : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCGTA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTATAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTANTTGATATNTTTTA-CTTCTTCTATACAGT---AAAACACAGTT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTNGACNGTACTCTTAGTGAACTCTTNANAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCCAATAGGNATTTAAAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
gi|1 : GTCAAAATCCAAATGCACTTAAAT---T-CAATGTTGTTTCA----T------TTGCATA---ATAGG----AAAGT------TTT--TGTAACATAT--GTCAAT-TTC----TTAAA-GTAATAACGGAGAGAGT-CTGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTACAAT
gi|1 : TTGACATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTTTTCTATGCAGC---AAAA-ACAATT-ACATGGAAGACGAGAT---GAAATCTTGCTTACAGC-AACATAATCTT-CATTCCCTGCAGTTTTCA-AACACGTAATTAACTTATCTACTGAACAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGACTTTTATTGAATTGGCATAGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCACATCCAATAGGAGTTTAAA-GAAAAGCAGGGCGTTGTTTTCGCACTCAATCGATGGT-ATATCACAACTATCTA-CAA-CAACAAAAAATATTTCACAACTTA-TTTTTCA---TATGTTTTATTTCATTCCTCTAAATAAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgacatttgtgtgtatctgtattctatctaattgatattttttactttttctatgcagcaaaaacaattacatggaagacgagatgaaatcttgcttacagcaacataatcttcattccctgcagttttcaaacacgtaattaacttatctactgaacaaggcaaatgacgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttgacttttattgaattggcatagtccttttcctgatttactctttttgatagtatttttaatgaattcttcaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccacatccaataggagtttaaagaaaagcagggcgttgttttcgcactcaatcgatggtatatcacaactatctacaacaacaaaaaatatttcacaacttatttttcatatgttttatttcattcctctaaataaaaatca
gi|10 : gtcaaaatccaaatgcacttaaattcaatgttgtttcatttgcataataggaaagtttttgtaacatatgtcaatttcttaaagtaataacggagagagtctgttctccaggttgataagatgtatattactctgtacatgcattatatatctatacagttgtttaatgtttatttttctcaacactctgtctatatgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAAGGAGGAAGTTGTTTTCGGACTCAATCAATGGT-ACATCACATCTATCTA-GAACCAAAAAAAAATGTTCCACAATTTA-TTTTTC-----ATGTCTTATTTCATTCCACTAAACAAAAATCA
gi|11 : tgAATCGATGGT-ACATCACAACTATCTA-CAG-CAAAAAAAAGT----------TTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCAgtggataactgacaatgatttaattttatttgttacaggcaatatggcaaaatggtccggttccagtataaaacagcgtga
gi|12 : TGGT-ACATCACAACTATCTA-CAA-CCAAAAAGAAAGTTTCACAACTAATTTTTTCATATTATGTCTTATTTCATTCCTCTAAATAAATATCAgtggttagtgcgtgataactgactataatttaatttaacttgttacaggcaatttggcaaaatggtccagttccggaataaaacaaacatga
gi|13 : AT--GCAAAT-TTC----GTGAA-GTAATGGTGGAGAGAGC-AAATTCTCCAGGTTGATAATA--TTTA----T--ATT--ACTC-TG-TAT--ATG----CA-----T-TAT-ATATTT-A-T-A------GAGTT-CT-----TAT-------------AC-G-TC-TAT--A-TTTCTCT-ACACTCTG---TATATACAA--AGTA-T---ATAAAAATGAATTGAT-gtggttagtgcgtgataactgacaatttcattttacttgttacaggcaatttggctaaatggtcc
gi|14 : GAA-GTAATAATGAAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTG----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-GTATCT-A-T-A------CATTTGTT-----AC--------------AT-G-TA-TAT--A-TTTCTCT-ACACTCTG---TATATGCCA--AGTA-T---ATGTGAATAA
gi|15 : aaatatttatgtatcaAATGATGGAGAGAGT-CAGTTC---AGGTTGATAAGA--TGTACATAT--ATT--ACTC-TG-TAC--ATG----GA-----T-TAT-ATATGT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--A-TTTATCT-ACACTCTG---TACACGCAA--AGTA-TATAATGAGAATAAATTGAC-TGAT--
gi|16 : C----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGAAGTGTA----TTAATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--T-TTACTCA-ACACTCT
gi|17 : TC-TG-CAC--ATA----CA-----TCTAT-ATATCT-A-TGA------CAATTGT-------A--------------ACAG-TT-TATGTTATTTCTCT-ACGCTGTA-T-AAAATGCATTTATTA-T---ATGAGAATAAATTGAT-T
gi|2 : --ATT--ACTCCTG-TACTCATG----CA-----T-TAA-A-ATCT-ACT-A------CGTTTGTTAATGTTA--------------ATTG-TT-TATG-T-TTTC----ACACTCGT-T-TATAT-CAA--AATA-T---ATGA-AATAAATTGAT-TGA------AATTGATGAAGCAAACTATAAAAtcaaggatt
gi|2 : gTTGGCATTTGTACAGTATCTGTTATTCTCGTCTACTTGA-ATGTTTTAGCTTCTTTCAT-CAGTGTGAATACACAGTTTACATG-AAGACAAAATATAGAAATCATGCTTGCAGCTAAAATGATCCTTCATTCCT-GCG--TTTCAGAACAG-TCATTAACGTATTTACTGAATAAGGCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|2 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcTTGAATCTTATTGAAT------AGT----TTCCT----------TTTTGATTATACTC---GTGA-CTCTTGATAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCC-ATAGATATTTAAAAGAAAAGGAAGGCGTTGCTTTCGCAC-CAAACGATGGTAACATCA-AA-TATCTATCAA-CCAAAAAAA--GTTTCAC-ACTTA--TTTTAA---TAGATC-TATTTCATTctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|21 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttATGCTTATA----ATGTGATCTA-CATTTCCTGCAGTTTTAA-AACAAATTATTAACATATT
gi|22 : GAATAAGGCAAATGACGTT
gi|23 : T-----TAT-------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCGA--AGTA-T---ATGAGAgataacttgtttgttaccagctcttcgcagta
gi|24 : gAGAGT-CAGTTCTCCAGGTTGATAAGA--TGT
gi|3 : atgatacAAA----TTCAATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT--TGTAACATAT--GTAAAT-TTC----GTAAA-GTAATAATGGAGAGAAT-CAGTTCTCCAGGTTG-----------A----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGATGTT-----CAAATAACAATATTATAT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATTTGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTAAAAT
gi|3 : TTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-ATTCTTATATACAGT---AAAACACAACT-ACATGGAAGACGAAATA---AAATCATGATTACAGC-AAAATG-------ATTCTCCGCAGCTTTCA-AACAGGTCATTAAC-----TACTGAACAAGGCAAATGACGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcttggcatttgtgtgtatctgtattctatctaattgatattttttaattcttatatacagtaaaacacaactacatggaagacgaaataaaatcatgattacagcaaaatgattctccgcagctttcaaacaggtcattaactactgaacaaggcaaatgacgtttataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : aaattcaatgttgtttaatttgcataataggaaaatttttgtaacatatgtaaatttcgtaaagtaataatggagagaatcagttctccaggttgatattactctgtacatgcattatatatctatacagatgttcaaataacaatattatatgtttatttttctcaacactctgtctatttgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcTTAACATTTGTGT-GTATCTGT-ATTTT-ATCTAATTGATATTTTTTA-CTTGTTCTATACAGT---AAAACACAATT-ACACGGAAGACGAAATAATGAAATCATGCGTACAAC-AAAATGATCCT-CATTGTCCGCAGTTTTCA-AACAGGTTATTAACTTATTTACTGAATAAAGCAAATGACGTTAtataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : agaaaaacaggatgtatttaagacaattaatgtcGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTGGACAGTATTTTTAATGAATTCTTCAAAGT-----------TTTCT----------TTTGCTACAA-TGTCATTTAATTTGCTTCT-CAGACCATTTGTTCCCACATCCAATAGGAATTTAAA-GAAAAGGAGGGTGTTGCTTTCCCACTCAATCGATGGT-ACATCACAGTTATCTA-CAA-CCAAAAAAAATGTTTCAAAACTTA-TTTTTCA---TGTGTCTTATTTCATTCCTCTAAATAAAAATCataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|5 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaaGTCAAAATCCAAATACACTTAAA----A-ATATGTTGTTTAA----T------TTGCATA---ATTGG----AAAAT------TTT-ATGTAACATATATGTAAAT-TTC----TTGAAAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----C--ATC--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATTT-A-C-A------CAGCTG-------TA--------------AC-G-TT-TAT--A-CTTCTCT-ACACTCTG---TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-tgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|6 : ttgtacaatctttgacaaatcaatagaaatagtgaattactggtatgtttgattcttccaaaggaacaaattacagaattttaaagaaggaattggcttttgaacagtattttagtatattaccataaaaaacccattcaaacacatacaacgaatcacaaattaccgacttaaaccggatgctggcaaaataaaccacgacaaaatagaatttgcaccatgtgcaaccatgaaataggcgacgagtatcattattcacatgtaaagatacagaaattgccgattgtagaaaaaaacttattccaaactactatcGTCAAAATCCAAATACACTTAAA----------GTTGTTTA-----T------TTGCATA---ATAGG----AAAAT------TCT-ATGTAACATGT-------T-TTC----TTGAA-GTAATAATG--GAGAGC-CGGTTCTCCAGGCTGATAAG----------------------C-TG-TAC--ATG----CATTTATT-TAT-ATATCTAA-T-AACCGTTCAGTTGTC-----TATG------------AT-G-TT-TATA-T-TTTCTCT-ACACTCTG---TATATGCAA--ATGA-TTA-GTTAGAATAAAATGATCTGAT--
gi|7 : tgatatgtttggttcttccaaaggaacaaagtacagaatttttaagaaggaattggcttttgaacaatatttttgtatattacctaaaaaaaatcaaacacattttgtatattcagaacaacgaatcataatttaccgaatggcaaaatataccacgacaaaagagaatgtgtaccttgtccaactatgaaataggcgacgagtatcattactgatatagaaattgcaaattgtaggaaaaaacttattccaaactatactatc---ATGAGAATAAATTGAT-TG--------ATTGATGAAGCAAACTATAAAA
gi|7 : TTGGCATTTGTAT-GTATCTGT-ATTCT-CTCTACTTGATATGTTTTA-CTTTTTCAATACAGT---GAAACACAGTT-ACATGGAAGACAAAATAATGAAATCATGCTTGCAGC-TAAATGATCCT-CATTCCCTGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcttggcatttgtatgtatctgtattctctctacttgatatgttttactttttcaatacagtgaaacacagttacatggaagacaaaataatgaaatcatgcttgcagctaaatgatcctcattccctgcagttttcaaacaggtcattaacgtatttactgaataaggcaaa
gi|8 : atgagaataaattgattgattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcCACTCAAAAATTT-CGATGTCGTTTAAAAATT------CTGCAAACAAACAGAGAATAAAATAATAAACCT-A-ATAAGA-AT--GTACATATTCACCTTTGCA--CAAGAATAAAAAGGGT-CAGTTCTCCAGGTTGATAA-A--TGTA----T--ATT--ACTC--G-TAC--ATGC---CATT---T-TATCATATGT-A---A------CAGTTGTT---------------------AT-GATT-TAA--T-ATACTATGATA-TTTA-T-TAT-TCAAA--AGTACT---ATGA-AATATGCAGAA-TGAA--ACTGACTGA
gi|9 : AAA----T-TGATGTTGTTTAG----TCCGTGGTTGTGCAC--ATAGG----AAAAT------TTTTATATAGCAT----GTAAAT-TTC----T-GAA-GTAA------AAAGGGTTCAGTTCTCCAGGTTGATAAGA--TGTA----T--ATTTAACTC-TGCTAC--ATAATGCCAT----T-TTT-ATATTT-A-T-A------CA--TGTT---------------------AT-G-TTATAT--T-TGTAT-T-ATATTCAGAG-TACAT-------GTA-T---ATGAGAATAA--TAAC-TGAacat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGGACATAATAGAATTTGTACCTTATTTAACTGTGAAATAAGTGACCAGTATACAGAGGAAAACTGATCCCCAGTTATTATCGTCAAAAACCAAATTTACCTAAA
Unaligned ( gi|19 ): GTTTTACAATCTTTGACAGATCAGTGATCTGTTTGATTCTTCCAAAGGAACAAAGTACAGAATTTTAAAGAAGGAATTGGCTTTTGN
Unaligned ( gi|20 ): ATTGAATCTAAGAAATTGCGTTTATAACGAATAAAAATTGTTCGTCCCAAGCATTTCGCTTTGAGTGTACTTTATCGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 222222222222 111 1111 111111 11 1111 1111 11111 444444444444444444444 1111 222 222222 111 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 11 1 33333333333333333333333333 1 1 1 1 111
lowQualScore : 55555555 666666666666 888 4444 999999 44 0 77 5 0000 4 0 3 55 8888 55 55 3 3 44 0000 66666 3 3 3 3 3 999999 333333333333333333333 6 3 3 2222 33 666 1 44 3 999 3 555555 8 8 8 0 0 0 8 1 3 444 8 777 1 6 6 6 6 1 9 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 888888 00 2 7 7 66666666666666666666666666 0 3 0 7 3 0 3 6 1 6 6 1 222 3 6 111
lowQualScore : ........ ............ ... .... ...... .. . .. . .... . . . .. .... .. .. . . .. .... ..... . . . . . ...... ..................... . . . .... .. ... . .. . ... . ...... . . . . . . . . . ... . ... . . . . . . . .................................................................................................................................................... . ...... .. . . . .......................... . . . . . . . . . . . . ... . . ...
lowQualScore : 77777777 000000000000 333 2222 222222 00 1 99 7 6666 4 7 6 00 5555 00 00 3 3 66 4444 22222 3 3 3 3 3 666666 999999999999999999999 2 1 1 5555 99 888 8 66 3 666 6 777777 0 0 0 6 8 6 0 4 8 000 0 444 0 7 7 3 7 0 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 333333 33 0 3 3 00000000000000000000000000 7 3 7 3 3 2 2 7 0 7 7 0 000 2 7 777
consensus : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
Reference ( family-1670 ) : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
gi|1 : GTCAAAATCCAAATGCACTTAAAT---T-CAATGTTGTTTCA----T------TTGCATA---ATAGG----AAAGT------TTT--TGTAACATAT--GTCAAT-TTC----TTAAA-GTAATAACGGAGAGAGT-CTGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTACAAT
gi|1 : TTGACATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTTTTCTATGCAGC---AAAA-ACAATT-ACATGGAAGACGAGAT---GAAATCTTGCTTACAGC-AACATAATCTT-CATTCCCTGCAGTTTTCA-AACACGTAATTAACTTATCTACTGAACAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGACTTTTATTGAATTGGCATAGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCACATCCAATAGGAGTTT-AAAGAAAAGCAGGGCGTTGTTTTCGCACTCAATCGATGGT-ATATCACAACTATCTA-CAA-CAACAAAAAATATTTCACAACTTA-TTTTTCA---TATGTTTTATTTCATTCCTCTAAATAAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgacatttgtgtgtatctgtattctatctaattgatattttttactttttctatgcagcaaaaacaattacatggaagacgagatgaaatcttgcttacagcaacataatcttcattccctgcagttttcaaacacgtaattaacttatctactgaacaaggcaaatgacgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttgacttttattgaattggcatagtccttttcctgatttactctttttgatagtatttttaatgaattcttcaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccacatccaataggagtttaaagaaaagcagggcgttgttttcgcactcaatcgatggtatatcacaactatctacaacaacaaaaaatatttcacaacttatttttcatatgttttatttcattcctctaaataaaaatca
gi|10 : gtcaaaatccaaatgcacttaaattcaatgttgtttcatttgcataataggaaagtttttgtaacatatgtcaatttcttaaagtaataacggagagagtctgttctccaggttgataagatgtatattactctgtacatgcattatatatctatacagttgtttaatgtttatttttctcaacactctgtctatatgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAAGGAGGAAGTTGTTTTCGGACTCAATCAATGGT-ACATCACATCTATCTA-GAACCAAAAAAAAATGTTCCACAATTTA-TTTTTC-----ATGTCTTATTTCATTCCACTAAACAAAAATCA
gi|11 : tgAATCGATGGT-ACATCACAACTATCTA-CAG-CAAAAAAAAGT----------TTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCAgtggataactgacaatgatttaattttatttgttacaggcaatatggcaaaatggtccggttccagtataaaacagcgtga
gi|12 : TGGT-ACATCACAACTATCTA-CAA-CCAAAAAGAAAGTTTCACAACTAATTTTTTCATATTATGTCTTATTTCATTCCTCTAAATAAATATCAgtggttagtgcgtgataactgactataatttaatttaacttgttacaggcaatttggcaaaatggtccagttccggaataaaacaaacatga
gi|13 : AT--GCAAAT-TTC----GTGAA-GTAATGGTGGAGAGAGC-AAATTCTCCAGGTTGATAATA--TTTA----T--ATT--ACTC-TG-TAT--ATG----CA-----T-TAT-ATATTT-A-T-A------GAGTT-CT-----TAT-------------AC-G-TC-TAT--A-TTTCTCT-ACACTCTG---TATATACAA--AGTA-T---ATAAAAATGAATTGAT-gtggttagtgcgtgataactgacaatttcattttacttgttacaggcaatttggctaaatggtcc
gi|14 : GAA-GTAATAATGAAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTG----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-GTATCT-A-T-A------CATTTGTT-----AC--------------AT-G-TA-TAT--A-TTTCTCT-ACACTCTG---TATATGCCA--AGTA-T---ATGTGAATAA
gi|15 : aaatatttatgtatcaAATGATGGAGAGAGT-CAGTTC---AGGTTGATAAGA--TGTACATAT--ATT--ACTC-TG-TAC--ATG----GA-----T-TAT-ATATGT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--A-TTTATCT-ACACTCTG---TACACGCAA--AGTA-TATAATGAGAATAAATTGAC-TGAT--
gi|16 : C----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGAAGTGTA----TTAATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--T-TTACTCA-ACACTCT
gi|17 : TC-TG-CAC--ATA----CA-----TCTAT-ATATCT-A-TGA------CAATTGT-------A--------------ACAG-TT-TATGTTATTTCTCT-ACGCTGTA-T-AAAATGCATTTATTA-T---ATGAGAATAAATTGAT-T
gi|2 : --ATT--ACTCCTG-TACTCATG----CA-----T-TAA-A-ATCT-ACT-A------CGTTTGTTAATGTTA--------------ATTG-TT-TATG-T-TTTC----ACACTCGT-T-TATAT-CAA--AATA-T---ATGA-AATAAATTGAT-TGA------AATTGATGAAGCAAACTATAAAAtcaaggatt
gi|2 : gTTGGCATTTGTACAGTATCTGTTATTCTCGTCTACTTGA-ATGTTTTAGCTTCTTTCAT-CAGTGTGAATACACAGTTTACATG-AAGACAAAATATAGAAATCATGCTTGCAGCTAAAATGATCCTTCATTCCT-GCG--TTTCAGAACAG-TCATTAACGTATTTACTGAATAAGGCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|2 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcTTGAATCTTATTGAAT------AGT----TTCCT----------TTTTGATTATACTC---GTGA-CTCTTGATAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCC-ATAGATATTTAAAAGAAAAGGAAGGCGTTGCTTTCGCAC-CAAACGATGGTAACATCA-AA-TATCTATCAA-CCAAAAAAA--GTTTCAC-ACTTA--TTTTAA---TAGATC-TATTTCATTctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|21 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttATGCTTATA----ATGTGATCTA-CATTTCCTGCAGTTTTAA-AACAAATTATTAACATATT
gi|22 : GAATAAGGCAAATGACGTT
gi|23 : T-----TAT-------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCGA--AGTA-T---ATGAGAgataacttgtttgttaccagctcttcgcagta
gi|24 : gAGAGT-CAGTTCTCCAGGTTGATAAGA--TGT
gi|3 : atgatacAAA----TTCAATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT--TGTAACATAT--GTAAAT-TTC----GTAAA-GTAATAATGGAGAGAAT-CAGTTCTCCAGGTTG-----------A----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGATGTT-----CAAATAACAATATTATAT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATTTGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTAAAAT
gi|3 : TTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-ATTCTTATATACAGT---AAAACACAACT-ACATGGAAGACGAAATA---AAATCATGATTACAGC-AAAATG-------ATTCTCCGCAGCTTTCA-AACAGGTCATTAAC-----TACTGAACAAGGCAAATGACGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcttggcatttgtgtgtatctgtattctatctaattgatattttttaattcttatatacagtaaaacacaactacatggaagacgaaataaaatcatgattacagcaaaatgattctccgcagctttcaaacaggtcattaactactgaacaaggcaaatgacgtttataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : aaattcaatgttgtttaatttgcataataggaaaatttttgtaacatatgtaaatttcgtaaagtaataatggagagaatcagttctccaggttgatattactctgtacatgcattatatatctatacagatgttcaaataacaatattatatgtttatttttctcaacactctgtctatttgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcTTAACATTTGTGT-GTATCTGT-ATTTT-ATCTAATTGATATTTTTTA-CTTGTTCTATACAGT---AAAACACAATT-ACACGGAAGACGAAATAATGAAATCATGCGTACAAC-AAAATGATCCT-CATTGTCCGCAGTTTTCA-AACAGGTTATTAACTTATTTACTGAATAAAGCAAATGACGTTAtataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : agaaaaacaggatgtatttaagacaattaatgtcGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTGGACAGTATTTTTAATGAATTCTTCAAAGT-----------TTTCT----------TTTGCTACAA-TGTCATTTAATTTGCTTCT-CAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGTGTTGCTTTCCCACTCAATCGATGGT-ACATCACAGTTATCTA-CAA-CCAAAAAAAATGTTTCAAAACTTA-TTTTTCA---TGTGTCTTATTTCATTCCTCTAAATAAAAATCataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|5 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaaGTCAAAATCCAAATACACTTAAA----A-ATATGTTGTTTAA----T------TTGCATA---ATTGG----AAAAT------TTT-ATGTAACATATATGTAAAT-TTC----TTGAAAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----C--ATC--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATTT-A-C-A------CAGCTG-------TA--------------AC-G-TT-TAT--A-CTTCTCT-ACACTCTG---TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-tgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|6 : ttgtacaatctttgacaaatcaatagaaatagtgaattactggtatgtttgattcttccaaaggaacaaattacagaattttaaagaaggaattggcttttgaacagtattttagtatattaccataaaaaacccattcaaacacatacaacgaatcacaaattaccgacttaaaccggatgctggcaaaataaaccacgacaaaatagaatttgcaccatgtgcaaccatgaaataggcgacgagtatcattattcacatgtaaagatacagaaattgccgattgtagaaaaaaacttattccaaactactatcGTCAAAATCCAAATACACTTAAA----------GTTGTTTA-----T------TTGCATA---ATAGG----AAAAT------TCT-ATGTAACATGT-------T-TTC----TTGAA-GTAATAATG--GAGAGC-CGGTTCTCCAGGCTGATAAG----------------------C-TG-TAC--ATG----CATTTATT-TAT-ATATCTAA-T-AACCGTTCAGTTGTC-----TATG------------AT-G-TT-TATA-T-TTTCTCT-ACACTCTG---TATATGCAA--ATGA-TTA-GTTAGAATAAAATGATCTGAT--
gi|7 : tgatatgtttggttcttccaaaggaacaaagtacagaatttttaagaaggaattggcttttgaacaatatttttgtatattacctaaaaaaaatcaaacacattttgtatattcagaacaacgaatcataatttaccgaatggcaaaatataccacgacaaaagagaatgtgtaccttgtccaactatgaaataggcgacgagtatcattactgatatagaaattgcaaattgtaggaaaaaacttattccaaactatactatc---ATGAGAATAAATTGAT-TG--------ATTGATGAAGCAAACTATAAAA
gi|7 : TTGGCATTTGTAT-GTATCTGT-ATTCT-CTCTACTTGATATGTTTTA-CTTTTTCAATACAGT---GAAACACAGTT-ACATGGAAGACAAAATAATGAAATCATGCTTGCAGC-TAAATGATCCT-CATTCCCTGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcttggcatttgtatgtatctgtattctctctacttgatatgttttactttttcaatacagtgaaacacagttacatggaagacaaaataatgaaatcatgcttgcagctaaatgatcctcattccctgcagttttcaaacaggtcattaacgtatttactgaataaggcaaa
gi|8 : atgagaataaattgattgattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcCACTCAAAAATTT-CGATGTCGTTTAAAAATT------CTGCAAACAAACAGAGAATAAAATAATAAACCT-A-ATAAGA-AT--GTACATATTCACCTTTGCA--CAAGAATAAAAAGGGT-CAGTTCTCCAGGTTGATAA-A--TGTA----T--ATT--ACTC--G-TAC--ATGC---CATT---T-TATCATATGT-A---A------CAGTTGTT---------------------AT-GATT-TAA--T-ATACTATGATA-TTTA-T-TAT-TCAAA--AGTACT---ATGA-AATATGCAGAA-TGAA--ACTGACTGA
gi|9 : AAA----T-TGATGTTGTTTAG----TCCGTGGTTGTGCAC--ATAGG----AAAAT------TTTTATATAGCAT----GTAAAT-TTC----T-GAA-GTAA------AAAGGGTTCAGTTCTCCAGGTTGATAAGA--TGTA----T--ATTTAACTC-TGCTAC--ATAATGCCAT----T-TTT-ATATTT-A-T-A------CA--TGTT---------------------AT-G-TTATAT--T-TGTAT-T-ATATTCAGAG-TACAT-------GTA-T---ATGAGAATAA--TAAC-TGAacat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGGACATAATAGAATTTGTACCTTATTTAACTGTGAAATAAGTGACCAGTATACAGAGGAAAACTGATCCCCAGTTATTATCGTCAAAAACCAAATTTACCTAAA
Unaligned ( gi|19 ): GTTTTACAATCTTTGACAGATCAGTGATCTGTTTGATTCTTCCAAAGGAACAAAGTACAGAATTTTAAAGAAGGAATTGGCTTTTGN
Unaligned ( gi|20 ): ATTGAATCTAAGAAATTGCGTTTATAACGAATAAAAATTGTTCGTCCCAAGCATTTCGCTTTGAGTGTACTTTATCGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 222222222222 111 1111 111111 11 1111 1111 11111 444444444444444444444 1111 222 222222 111 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 11 1 33333333333333333333333333 1 1 1 1 111
lowQualScore : 55555555 666666666666 888 4444 999999 44 0 77 5 0000 4 0 3 55 8888 55 55 3 3 44 0000 66666 3 3 3 3 3 999999 333333333333333333333 6 3 3 2222 33 666 1 44 3 999 3 555555 8 8 8 0 0 0 8 1 3 444 8 777 1 6 6 6 6 1 9 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 888888 00 2 7 7 66666666666666666666666666 0 3 0 7 3 0 3 6 1 6 6 1 222 3 6 111
lowQualScore : ........ ............ ... .... ...... .. . .. . .... . . . .. .... .. .. . . .. .... ..... . . . . . ...... ..................... . . . .... .. ... . .. . ... . ...... . . . . . . . . . ... . ... . . . . . . . .................................................................................................................................................... . ...... .. . . . .......................... . . . . . . . . . . . . ... . . ...
lowQualScore : 77777777 000000000000 333 2222 222222 00 1 99 7 6666 4 7 6 00 5555 00 00 3 3 66 4444 22222 3 3 3 3 3 666666 999999999999999999999 2 1 1 5555 99 888 8 66 3 666 6 777777 0 0 0 6 8 6 0 4 8 000 0 444 0 7 7 3 7 0 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 333333 33 0 3 3 00000000000000000000000000 7 3 7 3 3 2 2 7 0 7 7 0 000 2 7 777
consensus : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
Reference ( family-1670 ) : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
gi|1 : GTCAAAATCCAAATGCACTTAAAT---T-CAATGTTGTTTCA----T------TTGCATA---ATAGG----AAAGT------TTT--TGTAACATAT--GTCAAT-TTC----TTAAA-GTAATAACGGAGAGAGT-CTGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTACAAT
gi|1 : TTGACATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTTTTCTATGCAGC---AAAA-ACAATT-ACATGGAAGACGAGAT---GAAATCTTGCTTACAGC-AACATAATCTT-CATTCCCTGCAGTTTTCA-AACACGTAATTAACTTATCTACTGAACAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGACTTTTATTGAATTGGCATAGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCACATCCAATAGGAGTTT-AAAGAAAAGCAGGGCGTTGTTTTCGCACTCAATCGATGGT-ATATCACAACTATCTA-CAA-CAACAAAAAATATTTCACAACTTA-TTTTTCA---TATGTTTTATTTCATTCCTCTAAATAAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgacatttgtgtgtatctgtattctatctaattgatattttttactttttctatgcagcaaaaacaattacatggaagacgagatgaaatcttgcttacagcaacataatcttcattccctgcagttttcaaacacgtaattaacttatctactgaacaaggcaaatgacgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttgacttttattgaattggcatagtccttttcctgatttactctttttgatagtatttttaatgaattcttcaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccacatccaataggagtttaaagaaaagcagggcgttgttttcgcactcaatcgatggtatatcacaactatctacaacaacaaaaaatatttcacaacttatttttcatatgttttatttcattcctctaaataaaaatca
gi|10 : gtcaaaatccaaatgcacttaaattcaatgttgtttcatttgcataataggaaagtttttgtaacatatgtcaatttcttaaagtaataacggagagagtctgttctccaggttgataagatgtatattactctgtacatgcattatatatctatacagttgtttaatgtttatttttctcaacactctgtctatatgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAAGGAGGAAGTTGTTTTCGGACTCAATCAATGGT-ACATCACATCTATCTA-GAACCAAAAAAAAATGTTCCACAATTTA-TTTTTC-----ATGTCTTATTTCATTCCACTAAACAAAAATCA
gi|11 : tgAATCGATGGT-ACATCACAACTATCTA-CAG-CAAAAAAAAGT----------TTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCAgtggataactgacaatgatttaattttatttgttacaggcaatatggcaaaatggtccggttccagtataaaacagcgtga
gi|12 : TGGT-ACATCACAACTATCTA-CAA-CCAAAAAGAAAGTTTCACAACTAATTTTTTCATATTATGTCTTATTTCATTCCTCTAAATAAATATCAgtggttagtgcgtgataactgactataatttaatttaacttgttacaggcaatttggcaaaatggtccagttccggaataaaacaaacatga
gi|13 : AT--GCAAAT-TTC----GTGAA-GTAATGGTGGAGAGAGC-AAATTCTCCAGGTTGATAATA--TTTA----T--ATT--ACTC-TG-TAT--ATG----CA-----T-TAT-ATATTT-A-T-A------GAGTT-CT-----TAT-------------AC-G-TC-TAT--A-TTTCTCT-ACACTCTG---TATATACAA--AGTA-T---ATAAAAATGAATTGAT-gtggttagtgcgtgataactgacaatttcattttacttgttacaggcaatttggctaaatggtcc
gi|14 : GAA-GTAATAATGAAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTG----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-GTATCT-A-T-A------CATTTGTT-----AC--------------AT-G-TA-TAT--A-TTTCTCT-ACACTCTG---TATATGCCA--AGTA-T---ATGTGAATAA
gi|15 : aaatatttatgtatcaAATGATGGAGAGAGT-CAGTTC---AGGTTGATAAGA--TGTACATAT--ATT--ACTC-TG-TAC--ATG----GA-----T-TAT-ATATGT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--A-TTTATCT-ACACTCTG---TACACGCAA--AGTA-TATAATGAGAATAAATTGAC-TGAT--
gi|16 : C----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGAAGTGTA----TTAATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--T-TTACTCA-ACACTCT
gi|17 : TC-TG-CAC--ATA----CA-----TCTAT-ATATCT-A-TGA------CAATTGT-------A--------------ACAG-TT-TATGTTATTTCTCT-ACGCTGTA-T-AAAATGCATTTATTA-T---ATGAGAATAAATTGAT-T
gi|2 : --ATT--ACTCCTG-TACTCATG----CA-----T-TAA-A-ATCT-ACT-A------CGTTTGTTAATGTTA--------------ATTG-TT-TATG-T-TTTC----ACACTCGT-T-TATAT-CAA--AATA-T---ATGA-AATAAATTGAT-TGA------AATTGATGAAGCAAACTATAAAAtcaaggatt
gi|2 : gTTGGCATTTGTACAGTATCTGTTATTCTCGTCTACTTGA-ATGTTTTAGCTTCTTTCAT-CAGTGTGAATACACAGTTTACATG-AAGACAAAATATAGAAATCATGCTTGCAGCTAAAATGATCCTTCATTCCT-GCG--TTTCAGAACAG-TCATTAACGTATTTACTGAATAAGGCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|2 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcTTGAATCTTATTGAAT------AGT----TTCCT----------TTTTGATTATACTC---GTGA-CTCTTGATAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCC-ATAGATATTTAAAAGAAAAGGAAGGCGTTGCTTTCGCAC-CAAACGATGGTAACATCA-AA-TATCTATCAA-CCAAAAAAA--GTTTCAC-ACTTA--TTTTAA---TAGATC-TATTTCATTctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|21 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttATGCTTATA----ATGTGATCTA-CATTTCCTGCAGTTTTAA-AACAAATTATTAACATATT
gi|22 : GAATAAGGCAAATGACGTT
gi|23 : T-----TAT-------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCGA--AGTA-T---ATGAGAgataacttgtttgttaccagctcttcgcagta
gi|24 : gAGAGT-CAGTTCTCCAGGTTGATAAGA--TGT
gi|3 : atgatacAAA----TTCAATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT--TGTAACATAT--GTAAAT-TTC----GTAAA-GTAATAATGGAGAGAAT-CAGTTCTCCAGGTTG-----------A----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGATGTT-----CAAATAACAATATTATAT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATTTGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGATGAAGCAAACTGTAAAAT
gi|3 : TTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-ATTCTTATATACAGT---AAAACACAACT-ACATGGAAGACGAAATA---AAATCATGATTACAGC-AAAATG-------ATTCTCCGCAGCTTTCA-AACAGGTCATTAAC-----TACTGAACAAGGCAAATGACGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcttggcatttgtgtgtatctgtattctatctaattgatattttttaattcttatatacagtaaaacacaactacatggaagacgaaataaaatcatgattacagcaaaatgattctccgcagctttcaaacaggtcattaactactgaacaaggcaaatgacgtttataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : aaattcaatgttgtttaatttgcataataggaaaatttttgtaacatatgtaaatttcgtaaagtaataatggagagaatcagttctccaggttgatattactctgtacatgcattatatatctatacagatgttcaaataacaatattatatgtttatttttctcaacactctgtctatttgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcTTAACATTTGTGT-GTATCTGT-ATTTT-ATCTAATTGATATTTTTTA-CTTGTTCTATACAGT---AAAACACAATT-ACACGGAAGACGAAATAATGAAATCATGCGTACAAC-AAAATGATCCT-CATTGTCCGCAGTTTTCA-AACAGGTTATTAACTTATTTACTGAATAAAGCAAATGACGTTAtataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : agaaaaacaggatgtatttaagacaattaatgtcGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTGGACAGTATTTTTAATGAATTCTTCAAAGT-----------TTTCT----------TTTGCTACAA-TGTCATTTAATTTGCTTCT-CAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGTGTTGCTTTCCCACTCAATCGATGGT-ACATCACAGTTATCTA-CAA-CCAAAAAAAATGTTTCAAAACTTA-TTTTTCA---TGTGTCTTATTTCATTCCTCTAAATAAAAATCataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|5 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaaGTCAAAATCCAAATACACTTAAA----A-ATATGTTGTTTAA----T------TTGCATA---ATTGG----AAAAT------TTT-ATGTAACATATATGTAAAT-TTC----TTGAAAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----C--ATC--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATTT-A-C-A------CAGCTG-------TA--------------AC-G-TT-TAT--A-CTTCTCT-ACACTCTG---TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-tgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|6 : ttgtacaatctttgacaaatcaatagaaatagtgaattactggtatgtttgattcttccaaaggaacaaattacagaattttaaagaaggaattggcttttgaacagtattttagtatattaccataaaaaacccattcaaacacatacaacgaatcacaaattaccgacttaaaccggatgctggcaaaataaaccacgacaaaatagaatttgcaccatgtgcaaccatgaaataggcgacgagtatcattattcacatgtaaagatacagaaattgccgattgtagaaaaaaacttattccaaactactatcGTCAAAATCCAAATACACTTAAA----------GTTGTTTA-----T------TTGCATA---ATAGG----AAAAT------TCT-ATGTAACATGT-------T-TTC----TTGAA-GTAATAATG--GAGAGC-CGGTTCTCCAGGCTGATAAG----------------------C-TG-TAC--ATG----CATTTATT-TAT-ATATCTAA-T-AACCGTTCAGTTGTC-----TATG------------AT-G-TT-TATA-T-TTTCTCT-ACACTCTG---TATATGCAA--ATGA-TTA-GTTAGAATAAAATGATCTGAT--
gi|7 : tgatatgtttggttcttccaaaggaacaaagtacagaatttttaagaaggaattggcttttgaacaatatttttgtatattacctaaaaaaaatcaaacacattttgtatattcagaacaacgaatcataatttaccgaatggcaaaatataccacgacaaaagagaatgtgtaccttgtccaactatgaaataggcgacgagtatcattactgatatagaaattgcaaattgtaggaaaaaacttattccaaactatactatc---ATGAGAATAAATTGAT-TG--------ATTGATGAAGCAAACTATAAAA
gi|7 : TTGGCATTTGTAT-GTATCTGT-ATTCT-CTCTACTTGATATGTTTTA-CTTTTTCAATACAGT---GAAACACAGTT-ACATGGAAGACAAAATAATGAAATCATGCTTGCAGC-TAAATGATCCT-CATTCCCTGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcttggcatttgtatgtatctgtattctctctacttgatatgttttactttttcaatacagtgaaacacagttacatggaagacaaaataatgaaatcatgcttgcagctaaatgatcctcattccctgcagttttcaaacaggtcattaacgtatttactgaataaggcaaa
gi|8 : atgagaataaattgattgattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcCACTCAAAAATTT-CGATGTCGTTTAAAAATT------CTGCAAACAAACAGAGAATAAAATAATAAACCT-A-ATAAGA-AT--GTACATATTCACCTTTGCA--CAAGAATAAAAAGGGT-CAGTTCTCCAGGTTGATAA-A--TGTA----T--ATT--ACTC--G-TAC--ATGC---CATT---T-TATCATATGT-A---A------CAGTTGTT---------------------AT-GATT-TAA--T-ATACTATGATA-TTTA-T-TAT-TCAAA--AGTACT---ATGA-AATATGCAGAA-TGAA--ACTGACTGA
gi|9 : AAA----T-TGATGTTGTTTAG----TCCGTGGTTGTGCAC--ATAGG----AAAAT------TTTTATATAGCAT----GTAAAT-TTC----T-GAA-GTAA------AAAGGGTTCAGTTCTCCAGGTTGATAAGA--TGTA----T--ATTTAACTC-TGCTAC--ATAATGCCAT----T-TTT-ATATTT-A-T-A------CA--TGTT---------------------AT-G-TTATAT--T-TGTAT-T-ATATTCAGAG-TACAT-------GTA-T---ATGAGAATAA--TAAC-TGAacat
blockSeqs : AATTTCG GTCCGTGG CAA GAAT AATAAA TA AT A ACCT A T AG CATA TA TA C C TC ATGC TTTAT C C A C G ACCGTT CAAATAACAATATTAT A A A GTTA TG TC A TT C ATA C TTGATT A T C G C A GTG T ATA G T T T G A G A . CT A T A GTTCAAATGAATTTTTCAAAGTTTGG A A T A A T A C T C A ATG A T TAT
blockSeqs : TTCA AAAATT C . . A . . . . . . . . . . . . C TT . . . . . . AATGTTA T . . GT T TC G . . TA . AACT . . . . C A . . AAT G . . C . G A G . . . . . TTTCT . . . . . T . C . . A AAG A . .
blockSeqs : AAT AT . . . A . . . . . . . . . . . . . T . . . . . . TATG . . . AT T AG G . . . . . . . . . G A . . AAT A . . C . G T . . C . . C ATG A . .
blockSeqs : TTG AT . . . A . . . . . . . . . . . . . . . . . . . . TAT . . . A T T G . . . . . . . . . T . . . A G . . T . G G . T . . C GT . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . . . . . . . . TAT . . . A A T G . . . . . . . . . . . . . . . C G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . AC . . . A T T G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . AC . . . T A . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AC . . . T A . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . TA . . . T T . C . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . . A T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . T T . . . . .
blockSeqs : . . . . T . .
blockSeqCons : TCG***** A* T** ****** AAT
originalCons : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGAT--ATTGATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
finalCons : GTCAAAATCCAAATACACTTAAATCG-----ATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTTA-TGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTGT--TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGA------GATTGATGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGGACATAATAGAATTTGTACCTTATTTAACTGTGAAATAAGTGACCAGTATACAGAGGAAAACTGATCCCCAGTTATTATCGTCAAAAACCAAATTTACCTAAA
Unaligned ( gi|19 ): GTTTTACAATCTTTGACAGATCAGTGATCTGTTTGATTCTTCCAAAGGAACAAAGTACAGAATTTTAAAGAAGGAATTGGCTTTTGN
Unaligned ( gi|20 ): ATTGAATCTAAGAAATTGCGTTTATAACGAATAAAAATTGTTCGTCCCAAGCATTTCGCTTTGAGTGTACTTTATCGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 222222222222 111 1111 111111 11 1111 1111 11111 444444444444444444444 1111 222 3333333 111 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 11 1 33333333333333333333333333 1 1 1 1 111
lowQualScore : 55555555 666666666666 888 4444 999999 44 0 77 5 0000 4 0 3 55 8888 55 55 3 3 44 0000 66666 3 3 3 3 3 999999 333333333333333333333 6 3 3 2222 33 666 1 44 3 999 3 5555555 8 8 8 8 0 0 0 8 1 3 444 8 777 1 6 6 6 6 1 9 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 888888 00 2 7 7 66666666666666666666666666 0 3 0 7 3 0 3 6 1 6 6 1 222 3 6 111
lowQualScore : ........ ............ ... .... ...... .. . .. . .... . . . .. .... .. .. . . .. .... ..... . . . . . ...... ..................... . . . .... .. ... . .. . ... . ....... . . . . . . . . . . ... . ... . . . . . . . .................................................................................................................................................... . ...... .. . . . .......................... . . . . . . . . . . . . ... . . ...
lowQualScore : 77777777 000000000000 333 2222 222222 00 1 99 7 6666 4 7 6 00 5555 00 00 3 3 66 4444 22222 3 3 3 3 3 666666 999999999999999999999 2 1 1 5555 99 888 8 66 3 666 6 2222222 0 0 0 0 6 8 6 0 4 8 000 0 444 0 7 7 3 7 0 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 333333 33 0 3 3 00000000000000000000000000 7 3 7 3 3 2 2 7 0 7 7 0 000 2 7 777
consensus : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGA------GATTGA-TGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
Reference ( family-1670 ) : GTCAAAATCCAAATACACTTAAA----T-CGATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT-ATGTAACATAT--GTAAAT-TTC----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCT-ACACTCTG-T-TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGA------GATTGA-TGAAGCAAACTGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTCTTCTATACAGT---AAAACACAATT-ACATGGAAGACGAAATAATGAAATCATGCTTACAGC-AAAATGATCCT-CATTCCCCGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGANTCTTATTGAAT------AGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGTTCAAATGAATTTCTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGCTTCTTCAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGCGTTGCTTTCGCACTCAATCGATGGT-ACATCACAACTATCTA-CAA-CNAAAAAAAATGTTTCACAACTTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCA
gi|1 : GTCAAAATCCAAATGCACTTAAAT---T-CAATGTTGTTTCA----T------TTGCATA---ATAGG----AAAGT------TTT--TGTAACATAT--GTCAAT-TTC----TTAAA-GTAATAACGGAGAGAGT-CTGTTCTCCAGGTTGATAAGA--TGTA----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----TA--------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGA-TGAAGCAAACTGTACAAT
gi|1 : TTGACATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-CTTTTTCTATGCAGC---AAAA-ACAATT-ACATGGAAGACGAGAT---GAAATCTTGCTTACAGC-AACATAATCTT-CATTCCCTGCAGTTTTCA-AACACGTAATTAACTTATCTACTGAACAAGGCAAATGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGACTTTTATTGAATTGGCATAGTCCTTTTCCTGATTTACTCTTTTTGATAGTATTTTTAATGAATTCTTCAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCACATCCAATAGGAGTTT-AAAGAAAAGCAGGGCGTTGTTTTCGCACTCAATCGATGGT-ATATCACAACTATCTA-CAA-CAACAAAAAATATTTCACAACTTA-TTTTTCA---TATGTTTTATTTCATTCCTCTAAATAAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgacatttgtgtgtatctgtattctatctaattgatattttttactttttctatgcagcaaaaacaattacatggaagacgagatgaaatcttgcttacagcaacataatcttcattccctgcagttttcaaacacgtaattaacttatctactgaacaaggcaaatgacgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttgacttttattgaattggcatagtccttttcctgatttactctttttgatagtatttttaatgaattcttcaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccacatccaataggagtttaaagaaaagcagggcgttgttttcgcactcaatcgatggtatatcacaactatctacaacaacaaaaaatatttcacaacttatttttcatatgttttatttcattcctctaaataaaaatca
gi|10 : gtcaaaatccaaatgcacttaaattcaatgttgtttcatttgcataataggaaagtttttgtaacatatgtcaatttcttaaagtaataacggagagagtctgttctccaggttgataagatgtatattactctgtacatgcattatatatctatacagttgtttaatgtttatttttctcaacactctgtctatatgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAAGGAGGAAGTTGTTTTCGGACTCAATCAATGGT-ACATCACATCTATCTA-GAACCAAAAAAAAATGTTCCACAATTTA-TTTTTC-----ATGTCTTATTTCATTCCACTAAACAAAAATCA
gi|11 : tgAATCGATGGT-ACATCACAACTATCTA-CAG-CAAAAAAAAGT----------TTA-TTTTTCA---TATGTCTTATTTCATTCCTCTAAATAAAAATCAgtggataactgacaatgatttaattttatttgttacaggcaatatggcaaaatggtccggttccagtataaaacagcgtga
gi|12 : TGGT-ACATCACAACTATCTA-CAA-CCAAAAAGAAAGTTTCACAACTAATTTTTTCATATTATGTCTTATTTCATTCCTCTAAATAAATATCAgtggttagtgcgtgataactgactataatttaatttaacttgttacaggcaatttggcaaaatggtccagttccggaataaaacaaacatga
gi|13 : AT--GCAAAT-TTC----GTGAA-GTAATGGTGGAGAGAGC-AAATTCTCCAGGTTGATAATA--TTTA----T--ATT--ACTC-TG-TAT--ATG----CA-----T-TAT-ATATTT-A-T-A------GAGTT-CT-----TAT-------------AC-G-TC-TAT--A-TTTCTCT-ACACTCTG---TATATACAA--AGTA-T---ATAAAAATGAATTGAT-gtggttagtgcgtgataactgacaatttcattttacttgttacaggcaatttggctaaatggtcc
gi|14 : GAA-GTAATAATGAAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTG----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-GTATCT-A-T-A------CATTTGTT-----AC--------------AT-G-TA-TAT--A-TTTCTCT-ACACTCTG---TATATGCCA--AGTA-T---ATGTGAATAA
gi|15 : aaatatttatgtatcaAATGATGGAGAGAGT-CAGTTC---AGGTTGATAAGA--TGTACATAT--ATT--ACTC-TG-TAC--ATG----GA-----T-TAT-ATATGT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--A-TTTATCT-ACACTCTG---TACACGCAA--AGTA-TATAATGAGAATAAATTGAC-TGA------
gi|16 : C----TTGAA-GTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGAAGTGTA----TTAATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGTTGTT-----AC--------------AT-G-TT-CAT--T-TTACTCA-ACACTCTt
gi|17 : TC-TG-CAC--ATA----CA-----TCTAT-ATATCT-A-TGA------CAATTGT-------A--------------ACAG-TT-TATGTTATTTCTCT-ACGCTGTA-T-AAAATGCATTTATTA-T---ATGAGAATAAATTGAT-T
gi|2 : --ATT--ACTCCTG-TACTCATG----CA-----T-TAA-A-ATCT-ACT-A------CGTTTGTTAATGTTA--------------ATTG-TT-TATG-T-TTTC----ACACTCGT-T-TATAT-CAA--AATA-T---ATGA-AATAAATTGAT-TGA------AATTGA-TGAAGCAAACTATAAAAtcaaggatt
gi|2 : gTTGGCATTTGTACAGTATCTGTTATTCTCGTCTACTTGA-ATGTTTTAGCTTCTTTCAT-CAGTGTGAATACACAGTTTACATG-AAGACAAAATATAGAAATCATGCTTGCAGCTAAAATGATCCTTCATTCCT-GCG--TTTCAGAACAG-TCATTAACGTATTTACTGAATAAGGCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|2 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcTTGAATCTTATTGAAT------AGT----TTCCT----------TTTTGATTATACTC---GTGA-CTCTTGATAGTGTTCAAATGAATTTTTCAAAGTTTGGTTTGCTACAAATGTC-TTTAATTTGTTTCTTCAGACCATTTGTTCCCACATCC-ATAGATATTTAAAAGAAAAGGAAGGCGTTGCTTTCGCAC-CAAACGATGGTAACATCA-AA-TATCTATCAA-CCAAAAAAA--GTTTCAC-ACTTA--TTTTAA---TAGATC-TATTTCATTctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttttgaatcttattgaatagtttcctttttgattatactcgtgactcttgatagtgttcaaatgaatttttcaaagtttggtttgctacaaatgtctttaatttgtttcttcagaccatttgttcccacatccatagatatttaaaagaaaaggaaggcgttgctttcgcaccaaacgatggtaacatcaaatatctatcaaccaaaaaaagtttcacacttattttaatagatctatttcatt
gi|21 : gattactcctgtactcatgcattaaaatctactacgtttgttaatgttaattgtttatgttttcacactcgtttatatcaaaatatatgaaataaattgattgaaattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagataataatgtcttggcatttgtacagtatctgttattctcgtctacttgaatgttttagcttctttcatcagtgtgaatacacagtttacatgaagacaaaatatagaaatcatgcttgcagctaaaatgatccttcattcctgcgtttcagaacagtcattaacgtatttactgaataaggcctatatgctcgtttactaaaaaccaaaatacccgtccctctagtcttcgccaaaagcgtgttaccataccttagtctaataattctgcaaaatgtttcgaataaatcaaaaaaacaatggatttactactttacttgactaagaagatcacagttATGCTTATA----ATGTGATCTA-CATTTCCTGCAGTTTTAA-AACAAATTATTAACATATT
gi|22 : GAATAAGGCAAATGACGTT
gi|23 : T-----TAT-------------AT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATATGCGA--AGTA-T---ATGAGAgataacttgtttgttaccagctcttcgcagta
gi|24 : gAGAGT-CAGTTCTCCAGGTTGATAAGA--TGT
gi|3 : atgatacAAA----TTCAATGTTGTTTAA----T------TTGCATA---ATAGG----AAAAT------TTT--TGTAACATAT--GTAAAT-TTC----GTAAA-GTAATAATGGAGAGAAT-CAGTTCTCCAGGTTG-----------A----T--ATT--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATCT-A-T-A------CAGATGTT-----CAAATAACAATATTATAT-G-TT-TAT--T-TTTCTCA-ACACTCTG-TCTATTTGCAA--AGTA-T---ATGAGAATAAATTGAT-TGATTGATTGATTGA-TGAAGCAAACTGTAAAAT
gi|3 : TTGGCATTTGTGT-GTATCTGT-ATTCT-ATCTAATTGATATTTTTTA-ATTCTTATATACAGT---AAAACACAACT-ACATGGAAGACGAAATA---AAATCATGATTACAGC-AAAATG-------ATTCTCCGCAGCTTTCA-AACAGGTCATTAAC-----TACTGAACAAGGCAAATGACGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcttggcatttgtgtgtatctgtattctatctaattgatattttttaattcttatatacagtaaaacacaactacatggaagacgaaataaaatcatgattacagcaaaatgattctccgcagctttcaaacaggtcattaactactgaacaaggcaaatgacgtttataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : aaattcaatgttgtttaatttgcataataggaaaatttttgtaacatatgtaaatttcgtaaagtaataatggagagaatcagttctccaggttgatattactctgtacatgcattatatatctatacagatgttcaaataacaatattatatgtttatttttctcaacactctgtctatttgcaaagtatatgagaataaattgattgattgattgattgatgaagcaaactgtaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgaaaaacaggataaaaataattaatgtcTTAACATTTGTGT-GTATCTGT-ATTTT-ATCTAATTGATATTTTTTA-CTTGTTCTATACAGT---AAAACACAATT-ACACGGAAGACGAAATAATGAAATCATGCGTACAAC-AAAATGATCCT-CATTGTCCGCAGTTTTCA-AACAGGTTATTAACTTATTTACTGAATAAAGCAAATGACGTTAtataaagaaccaaaattatccgtcctcagctcttcgccgtaagtgtgtgtcactctagtgtatatttctgcaaaatattcgaattaatcaaatacaatgaaatggatgtacgtacttggtttaagaagatca
gi|4 : agaaaaacaggatgtatttaagacaattaatgtcGTTGAGCCTTATTGAAT------AGTCTTTTTCCTAATTTACTCTTTTGGACAGTATTTTTAATGAATTCTTCAAAGT-----------TTTCT----------TTTGCTACAA-TGTCATTTAATTTGCTTCT-CAGACCATTTGTTCCCACATCCAATAGGAATTT-AAAGAAAAGGAGGGTGTTGCTTTCCCACTCAATCGATGGT-ACATCACAGTTATCTA-CAA-CCAAAAAAAATGTTTCAAAACTTA-TTTTTCA---TGTGTCTTATTTCATTCCTCTAAATAAAAATCataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaagttgagccttattgaatagtctttttcctaatttactcttttggacagtatttttaatgaattcttcaaagttttcttttgctacaatgtcatttaatttgcttctcagaccatttgttcccacatccaataggaatttaaagaaaaggagggtgttgctttcccactcaatcgatggtacatcacagttatctacaaccaaaaaaaatgtttcaaaacttatttttcatgtgtcttatttcattcctctaaataaaaatctgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|5 : agaaaaacaggatgtatttaagacaattaatgtcttaacatttgtgtgtatctgtattttatctaattgatattttttacttgttctatacagtaaaacacaattacacggaagacgaaataatgaaatcatgcgtacaacaaaatgatcctcattgtccgcagttttcaaacaggttattaacttatttactgaataaagcaaatgacgttaataacttgtttgtccccagttgtttgcagtaagtgtgtttcactttagtgtatatttcagcaaaatattcgaattaataaaaaaaaaattggatttacttacttggattcagaagagcaaGTCAAAATCCAAATACACTTAAA----A-ATATGTTGTTTAA----T------TTGCATA---ATTGG----AAAAT------TTT-ATGTAACATATATGTAAAT-TTC----TTGAAAGTAATAATGGAGAGAGT-CAGTTCTCCAGGTTGATAAGA--TGTA----C--ATC--ACTC-TG-TAC--ATG----CA-----T-TAT-ATATTT-A-C-A------CAGCTG-------TA--------------AC-G-TT-TAT--A-CTTCTCT-ACACTCTG---TATATGCAA--AGTA-T---ATGAGAATAAATTGAT-tgtggttagtgcgtgataactgacaataatttaaatctacttgttacagg
gi|6 : ttgtacaatctttgacaaatcaatagaaatagtgaattactggtatgtttgattcttccaaaggaacaaattacagaattttaaagaaggaattggcttttgaacagtattttagtatattaccataaaaaacccattcaaacacatacaacgaatcacaaattaccgacttaaaccggatgctggcaaaataaaccacgacaaaatagaatttgcaccatgtgcaaccatgaaataggcgacgagtatcattattcacatgtaaagatacagaaattgccgattgtagaaaaaaacttattccaaactactatcGTCAAAATCCAAATACACTTAAA----------GTTGTTTA-----T------TTGCATA---ATAGG----AAAAT------TCT-ATGTAACATGT-------T-TTC----TTGAA-GTAATAATG--GAGAGC-CGGTTCTCCAGGCTGATAAG----------------------C-TG-TAC--ATG----CATTTATT-TAT-ATATCTAA-T-AACCGTTCAGTTGTC-----TATG------------AT-G-TT-TATA-T-TTTCTCT-ACACTCTG---TATATGCAA--ATGA-TTA-GTTAGAATAAAATGATCTGA------
gi|7 : tgatatgtttggttcttccaaaggaacaaagtacagaatttttaagaaggaattggcttttgaacaatatttttgtatattacctaaaaaaaatcaaacacattttgtatattcagaacaacgaatcataatttaccgaatggcaaaatataccacgacaaaagagaatgtgtaccttgtccaactatgaaataggcgacgagtatcattactgatatagaaattgcaaattgtaggaaaaaacttattccaaactatactatc---ATGAGAATAAATTGAT-TGA--------TTGA-TGAAGCAAACTATAAAAt
gi|7 : TTGGCATTTGTAT-GTATCTGT-ATTCT-CTCTACTTGATATGTTTTA-CTTTTTCAATACAGT---GAAACACAGTT-ACATGGAAGACAAAATAATGAAATCATGCTTGCAGC-TAAATGATCCT-CATTCCCTGCAGTTTTCA-AACAGGTCATTAACGTATTTACTGAATAAGGCAAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcttggcatttgtatgtatctgtattctctctacttgatatgttttactttttcaatacagtgaaacacagttacatggaagacaaaataatgaaatcatgcttgcagctaaatgatcctcattccctgcagttttcaaacaggtcattaacgtatttactgaataaggcaaa
gi|8 : atgagaataaattgattgattgatgaagcaaactataaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgataaaaaactggatgaagataattaatgtcCACTCAAAAATTT-CGATGTCGTTTAAAAATT------CTGCAAACAAACAGAGAATAAAATAATAAACCT-A-ATAAGA-AT--GTACATATTCACCTTTGCA--CAAGAATAAAAAGGGT-CAGTTCTCCAGGTTGATAA-A--TGTA----T--ATT--ACTC--G-TAC--ATGC---CATT---T-TATCATATGT-A---A------CAGTTGTT---------------------AT-GATT-TAA--T-ATACTATGATA-TTTA-T-TAT-TCAAA--AGTACT---ATGA-AATATGCAGAA-TGA------AACTGACTGAA
gi|9 : AAA----T-TGATGTTGTTTAG----TCCGTGGTTGTGCAC--ATAGG----AAAAT------TTTTATATAGCAT----GTAAAT-TTC----T-GAA-GTAA------AAAGGGTTCAGTTCTCCAGGTTGATAAGA--TGTA----T--ATTTAACTC-TGCTAC--ATAATGCCAT----T-TTT-ATATTT-A-T-A------CA--TGTT---------------------AT-G-TTATAT--T-TGTAT-T-ATATTCAGAG-TACAT-------GTA-T---ATGAGAATAA--TAAC-TGA------cat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGGACATAATAGAATTTGTACCTTATTTAACTGTGAAATAAGTGACCAGTATACAGAGGAAAACTGATCCCCAGTTATTATCGTCAAAAACCAAATTTACCTAAA
Unaligned ( gi|19 ): GTTTTACAATCTTTGACAGATCAGTGATCTGTTTGATTCTTCCAAAGGAACAAAGTACAGAATTTTAAAGAAGGAATTGGCTTTTGN
Unaligned ( gi|20 ): ATTGAATCTAAGAAATTGCGTTTATAACGAATAAAAATTGTTCGTCCCAAGCATTTCGCTTTGAGTGTACTTTATCGTA