lowQualScore : 11 2222222 111 111 111 33333333 22222222222222 1 222 4444444444444444444 22 1 2222222 2 22222 22222 11111111 222222222222222 1 1111111 111111 1 111111111 1111 111 222222222222 1 222222222222222 1111111111111 11111 1 1 555555555555 11
lowQualScore : 8 00 6 9999999 6 6 7 111 111 6 0 8888 444 1 55555555 55555555555555 77 77 4 77 0 3 000 0 5 3333333333333333333 7777 5 00 4 4 4 2 4 1 4 3 7777777 8 1 55555 4 88888 4 66666666 999999999999999 8 5 6666666 0 4 777777 8 5 2 66 333333333 5 88 2 2 8888 6 4 4 4 88 4 66 333 222222222222 66 0 9 5 444444444444444 9999999999999 5 33333 5 3 0 3 9 5 1 77 5 5 8 444444444444 6 77 6 6 6
lowQualScore : . .. . ....... . . . ... ... . . .... ... . ........ .............. .. .. . .. . . ... . . ................... .... . .. . . . . . . . . ....... . . ..... . ..... . ........ ............... . . ....... . . ...... . . . .. ......... . .. . . .... . . . . .. . .. ... ............ .. . . . ............... ............. . ..... . . . . . . . .. . . . ............ . .. . . .
lowQualScore : 0 22 0 3333333 7 7 5 777 777 7 6 7777 444 7 99999999 66666666666666 44 99 7 99 0 2 222 2 0 9999999999999999999 0000 0 00 4 4 4 0 4 9 4 6 3333333 0 1 00000 0 66666 4 11111111 888888888888888 1 6 2222222 2 5 777777 6 0 8 11 999999999 0 22 5 0 2222 0 4 4 4 33 4 11 000 222222222222 99 7 9 7 999999999999999 9999999999999 7 99999 7 2 8 6 3 7 4 99 7 7 3 222222222222 7 55 0 0 0
consensus : GTTCCAAGATGACG-GGGTAT-AAACACAACACGG--AAGTGTGAA-AA-TTGTTT---TT---GCTTTTATTTTGTATCAGGAATGTTTNGCGTC-GACGAAAA-----A--AGTC----TAAA------AAG-A--TCATGAC--TTCT-TCCCTTTGGTTATTT--CTTCT-T-------GG-CTC-GT---TC--G-GG-AC-CAT-GCAATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGT-GTTTTCTAA----AGT-CAACTT----CAGT-AAATTGTG--------GAA--TT--G-----T--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGT-AAGTT-CATTGAAC-ATTA-AT-GTTG--TCAAAAGCGCTTTTCT-TGC-GT-CACA--CCCGCCATATT-TAAAC-----NAA-------CAC---T---NTA--CAAC-ACGA----GACG-TTTTATTTCAATTTCTAAAGTTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAATGTA
Reference ( gi|1 ) : GTTCCAAGATGGCG-GGGTAT-AAACATAATCCAT--AAGTGTGAA-AA-TTGTCT---TT---GCTTTTATTTTGGATCAGGAATGTTTTGCGTC-AACGAAAA-----C--AGTC----TAGA------AAG-A--TCATTAC--TTTT-TCCCTTTGGTTATTT--ATTCT-T-------AG-CTA-GT---TC--G-GG-AC-GAT-GCAATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGT-GTTTACTAA----CGT-CAACTT----GAGT-AAATTGTG--------GAA--TT--G-----T--CATCATAAATAGTTTCAACAGAT-------GGGACGGATTCCCTAACGTTCGTTTGATTTGATACAAAC-TGAAGCG-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAATTCATATATGGT-AAGTT-CATTGAAC-ATTC-AT-GTTG--TCAAAGGTACTTTTCT-TGT-CT-CACA--CCCGCCTTATT-TAAAC-----CAA-------CAC---T---TTA--TAAC-ACGA----AACG-TTTTATTTCAATTTCTAAAGATCAGTC-ACTG-AGCAT--G-CGCAAAT-TCAACACTAGTGTCA--------AA--AG-GGTTGGTCAAATCGAACGCA
gi|12 : GTTCCAAGATGACG-GGGTAT-AAACACAACACGG--AAGTGTGAA-GA-TTGTTT---TT---GCTTTCATTTTGTATTAGGAACG-TGTAAGTC---TTAAAA-----CAAAGTC----TAAA------ATT-A--TCACGAC--TTTT-CCCCTTTGATTATTT--CTTCT-T-------TGACTC-GT---TC--G-GG-AC-CAT-GCAATTT-CTCG-AACAATT-TCTT-G-A-ATTTTTTTTTACT-TA
gi|15 : agctggagttactagaGTTCCAAGATGGCG-GGGTAT-AAACACAACCCGG--AAGTGTGAA-AA-TTGTTT---TT---GCTTTTATTTTGGATCAGGAATGTTTTGCGCA-AACGAAAA-----A--AGTC----TAAA------AAG-A--TCATTAC--TTTTCTCCC
gi|10 : TCCCAAGATGGCGCGGGTATTAACCACAACCCCCGGAAGTGTGAA-AAATTGTTT---TTTTTGCTTTTATTTTGGATCAGGAATG-TTTGCGCA-AACGAAAA-----A--AGTC----TA-A------AAG-A--TCATTAC--TTTTCTCCCT
gi|2 : agcgacacttgttagcgcgagtaatcgagttgtaatataaacgtccaaatttcgacagcactagtgtcgcactcagtttacgtgagtatattccccagtttacgcttggagtcaccagtgttTTCAAGATAACA-GGGTAT-GAACACAACACAG--AGATGTAAATAA-TTGTATAATTT---GCTTTTATTT-GTACCAGAAGAGTGAAGCGTTTGATAAAAA--------AGTC----CAAC------AAA-A--T-ATTATGGCTTT-TGCTTTTGGTT-TCT--CTCTT-C-------A---TA-G-----------G-AC--AT-GCAATTT-TTCA-GACAATTTCTTG-AAA-ATGTT-CTTCGCTGTAA-----AGAAAAGT-GTTTTC-AA-----GT-CTACTT----CAGT-AAATTGTG--------GAACTTT--G-----C--CATCATAAATATTTTCAACAGAT-------GGGACGAATTCTTAAACATTAGTTTGATTAAATACAAAC-TGAATCG-CAAAGTCA-T--T-AA--ATCATTTAATA-TGCTCGTT-CATTCATATGTGGT-AAA-T-CATTGAATAAATA-AT-GCTA--TCAAA---ACTTTT-T-TGCATT-CATA--TAC-TCTTATT-TGAGC-----AAACGTTAAGCAC---T---ATA--CAAC-ATGA----GATG-TT
gi|8 : gtgtgCCAAGATGATG-GGATA--AAATACAACGCAG--AAATGTGAA-AA-T-ATTT---TT---GCTTTTATTTTGCATCAGAAATGCGTAGCGTC-CATAAAGA-----A--AGTCTTTTTA-A------AAA-A--TCATGCC--TTCT-TCCCTTTGGATATTTCCACT-T-T-------GG-CTC-CT---TC--A-GG-AC-CGT-GAAATTT-CCCG-AACAATT-CCTT-G---ATTTTTTTTTACT-T-------C-AAAAGT-GTTTCCTAT----AGT-CAACTT----CAGT-AAATTTTG--------GAATTTT--G-----T--GTTCATAAATA
gi|11 : GATAA-AAACACAAGACGG--TAGTGTGAA-AT-TTTATT---TT---GCTTTTATTTTTTATCAGAAATGTGTAGTGTC-GATGGTAA-----A--AGCT----TTTA------AAGTAATTTATGGC--TCCT-TCCCTTTGGTTATTT--CTTCT-T-------TG-ACACCT---TC--G-GG-AC-CGT-GCGATCT-CTCA-AACAATT-CCTT-GAA-ATGTTTCTTTACC-TAA-----AGAAAAGTAGTTT-CTAAATTTAGT-CAACTttaatttgattaaatacaaattgaatcgcaaagccattgaat
gi|7 : GAAAGTTTT---TG-AACTAAAAATATGT--AGTG----TAGATTAATAAAT-A--TCATGGC--CTCT-TCCCTTCAGTTCTTT--CTTCTGT-------GG-TTA-TT---TC--G-GG-AC-CAT-GCACTTT-CTCA-AACAATTTTCTT-GAA-ATGTTTCTTCACT-TAA-----ACAAAAAC-GTTTTCTGA----AGT-CAGCTT----CAGA-ATATTGTGAAAATGATGAA--CT--GTGCCTT--CAT-ATAAATG--TTGAACAAAT-------TGGATGGATTCCCTACTGTTAGATTGACTGGATAAGAAC-T---------AAATCAC------T--ATC-TTTAATA-CCCAGATTCACTTTACATGTGGT-AAGTT-GATTGAAC-ATAA-AT-GTTG--TTAAATGCACTTTT
gi|3 : caacatggaggtgt-TCCCTTTGGTTATTT--CCTCT-TTGACTCCAT-CCA-ATAAATCATG-AA-AC-CAT-GCACTTT-CTCGCAACAATTTCCTTCAAA-ATGTTTATGGAAT-TAC-----A-AAAAGT-GTTTTTTAA----AGT-TAACTTTC--AAGTAAAATTATG--------GAAC-TT--A-----T--CATCA-AGATA-TTTAGGCAGAT-------GGGAC-GATTCCGTAACA-TAGTTT-ATTCGATACAATTGTGAATCG-CAAAG-CATT--A-AT--AAC--TCAAT--T-CTC-T----TTCATATGAGGCAAAGTT-CATTGAAC--TTCAATAATTGATCCAAAAGCGCTTTTCT-TGC-GT-CACA--CCCGCA-TATTCTAAAC-----AAA-------CAC---T---ATA--CAAG-GCAATTAGGGCGTTTTTATTT-AATGT-TAACGTTCAGTA-ACAGAAGCAA--G-AGC-AAT-TCAACTCTATAGTCAC-------GATTAG-GGTTGG
gi|5 : cTTCT-TT------GG-CTC-GT---TC--GAGG-ACCGAT-GCAATTTTCTAG-AGCAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGT-GTTTACTAA----CGT-CAACTT----CAAT-AAAGTGTG--------GAA--TT--G-----TATCATCATAAATATTTTCAACATAT-------GGGACGGATTCCCTAACGTTAGTTTGATTTGATACAAAC-TGAAACA-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAAGTCATATGTGGT-AATTT-CATTGAAC-ATTC-AT-GTTG--TCAAAAGTACTT---T-TGT-CT-CACA--CCCGCCATATT-TAAAC-----CAA-------CAC---T---TCA--CAAC-ACGA----GACG-TTTTATTTCAATTTCTAAAGATCAATC-AATG-AGCAC--G-CGCAAAT-TCAACACTAGTGTCA--------CA--AG-GGTTGGTCAAATCAAA
gi|4 : TTT-T-------GG-CTCCGT---TC--G-GGTAC-CATTGCAATTT-C-AG-AGCAATTCCCTT-GAATGCGTTTCTTTACT-TAATA---A-AAAAGTAGTTT-CTAAA---CGTTCAATCT----CAAT-AAGTGGTG--------GAA--TT--G-----TATCA-CATAAATATTTTCAACATATTCAGGGGGGGACGGATTCC-TA--GTTAGTTTGATTTGA-ACAAAC-TGAAACAACAAAGTCATT--TTAT--GTC-TTTAATACTGCTCATTAAAGTCATATGTGGT-AAATTTCATTGAAC-ATTC-AT-GTTG--TCAAAAGTACTT---T-TGT-CTCCACA--CC--CCATATT-TAAAC-----CAA-------CAC---T---TCC--AAACAACG-----AACA-TTTTATTTCAA-TTCTAAAGATCAATCAAATGAAGCACGGG-CGCAAATATCAACA-TAGTGTCA--------CA--AG-GGTTGGT
gi|6 : tcAT-G-AATGT-TTCG-AACAATTCT-TT-GAA-ATACTTCTTTATC-TAACGAAAA-AAAAGT-GTTT-CTAA----AAT-CAACTTTTAAAAGT-AAATTGTA--------GAA--TTATG-----T--CTTCATAAATATTTTAAACAGAT-------GGGGCAGA-------------GTTTGATTAGACACAAAC-TGTATCA-TAAATTCATT--A-AT--ATC-TTTAAT---------------CATATGTGGT-AATTG-CATAGAAC-ATTA-AT-GATA--TCAAAAGCACTTTTCT-TGT-GC-CACA--CCCGCCATATC-TAAAC-----AAG-------CAC---T---ATG--TAAC-ACGA----ACTG-TTTTATTT-AATTTCTAA-----AGTC-ACTG-AGCAT--G-CGCAAAT-TCAACTCTGGTGTCA--------AA--AG-GGTTATTTAAATCAAAtcatcaaa
gi|9 : agaacatgcTGCTTCTTTACC-TCA-----ACAAAAGC-GTTTTCTGA----AAT-CAGTTT----TAGA-AAATTGTG--------GAA--CT--G-----TGCCTTCATAAAAATGTTGAACAGAT-------GGGACAGATTCCCTGACGTTAGATTGATTGTATATAGAC-TGAATCA-TAAAGTCGTCAAT-ATCGATC-TTTGGTA-TGCTCATTCACTTCACATGTGGT-GAGTT-CATTGGAC-ATAA-AT-GTTG--TTAAACGCGCTTTCATGTGT--T-CGTA--CCC
gi|16 : cgtccaattttcgacattagtgtcaaacctgTTCCTTTAC----A-----C-AATGAT-GTTTTCTAA----AGT-CAACTT----CAGT-AAATTGTG--------GAG--CT--G-----TATCATCATAAATAGTTTAAACAGGT-------GGGACGGACTCCCTAAC-----TTTGATT
gi|8 : acacAATATTAATTTGATTAAATACAAAT-TGAATCG-CAAAGCCATT--
gi|14 : ccaagatgatgggataaaatacaacgcagaaatgtgaaaatatttttgcttttattttgcatcagaaatgcgtagcgtccataaagaaagtctttttaaaaaatcatgccttcttccctttggatatttccactttggctccttcaggaccgtgaaatttcccgaacaattccttgatttttttttacttcaaaagtgtttcctatagtcaacttcagtaaattttggaattttgtgttcataTCATT--C-AA--ATC-TTTAATA-TGCTCATTCACTTCATATGTGGT-AAGTT-TATTAAAC-ATTC-AT-GCTG--TCAAAAG------------------ACA--CCCGCCATATT-TAAACCAACTCAA-------CAC---T---ATA--CAAC-ATGA----GACG-TTTTAgaat
gi|13 : TTTATGTGTGGT-AAGTT-CATTGGAC-ATAA-AT-GTTG--TTAA-TGCGCTTTACG-TGC-GT-C-CATTCCCGCC-------AAAC------AA-------CACATGTACATTAAATAAA-ATGA----GACG-TTTTATTTTGATTTCTGTGGTTCAGCC-ACTG-AGCAT--G-CGCAAAT-TCAA
gi|20 : AGTTCAGTC-ACTG-GGCTT--G-TGCAAAT-TCAACTCTAGTGTCACAAGGCCTAA--AG-AGTTGGTT-AATCAAATGT
gi|19 : gAGTTCAGTC-ACTG-GGCTT--GATGCAAAT-TC-ACTCTAGTGTCACAAGCCT-AA--AGAGATTGGTT-AATCAAATGT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): CACTAAGGGTGCATCGATTAAGTGACATGAGTTGCATGAAATAACTGGAGTTTAAAAAATCCATTTTTCGACATAGTGTCACAGGGTGTGAATGTGCAAGTTTATT
Unaligned ( gi|18 ): ACTTGGAGGGCATTTGATTAAGCGACACGAGTTTCACGTGTAACTATAATTGTAAATTTAAAAACGTCCAATTTTCGACATTAGTGTC
Unaligned ( gi|21 ): GAGTAACTAGATTTGGAGATAAAACGTTCAATTTTCGACACTAGTGTCGCATGGGTATTACGCAAGG
Unaligned ( gi|22 ): ACTTTTGAGTTACGCGAGTTACAGGAGTTGCAAATAAAA
Alignments
lowQualScore : 111111 11111111 11 22222222222 2222222 1111 11111111 222222222222 1111111 1111 11 111111111111111 1111111 11111 1 111 444444444 1
lowQualScore : 6 77 1 66 5 55 0 5 66 888 0 4 666 0 000000 66 22222222 5 7 4 8 1 00 4 8 77 11111111111 4 4 4 4 777 4 4 4 1 4 4 3 1111111 1 7777 3 3 4444 4 44444444 222222222222 1 1 3333333 3 0 2 0 1 4 4 1111 66 4 66 0 777 4 4 4 00 4 55 2 55 3 11 66 0 5 888888888888888 5 1 6666666 5 00000 5 9 2 3 5 0 000 5 5 5 666666666 77 5 5
lowQualScore : . .. . .. . .. . . .. ... . . ... . ...... .. ........ . . . . . .. . . .. ........... . . . . ... . . . . . . . ....... . .... . . .... . ........ ............ . . ....... . . . . . . . .... .. . .. . ... . . . .. . .. . .. . .. .. . . ............... . . ....... . ..... . . . . . . ... . . . ......... .. . .
lowQualScore : 7 44 9 99 0 44 1 0 99 888 1 9 111 2 555555 99 55555555 0 6 2 9 4 00 4 9 33 11111111111 4 0 0 0 000 0 0 8 6 0 0 3 8888888 5 7777 6 6 0000 0 55555555 888888888888 2 0 0000000 2 7 3 7 0 4 4 1111 11 4 33 8 111 0 0 0 99 0 55 4 33 9 88 11 4 0 555555555555555 0 0 2222222 0 99999 0 3 0 8 0 0 000 0 0 4 444444444 99 7 5
consensus : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCT----AA--AA-ANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--G--T--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
Reference ( family-1621 ) : GTTCCAAGATGACG-GGGTAT-AAACACAACAC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGTATCAGGAATGTTTNGCGTC-GACGAAAAAAG--TCT----AA--AA-AGATCATGACTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--G--T--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----NAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGTTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAATGTA
gi|1 : GTTCCAAGATGGCG-GGGTAT-AAACATAATCC--ATAAGTGTGAA-AA-TTGT-C--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGTC-AACGAAAACAG--TCT----AG--AA-AGATCATTACTTTT-TCCCTTTGGTTATTTATTC-T-T-AGCTA-GTTC-----------G-GG-ACG-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTG----AGTAAA-TTGTG--------GAA--TT--G--T--CATCATAAATAGTTTCAACAGAT-------GGGACGGATTCCCTAACGTTCGTTTGATTTGATACAAAC-TGAAGCG-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAATTCATATATGGTAA-GTT-CATTGAAC-ATTCATG-TTG--TCAAAGGTACTTTTCTTGTC-TCACA--CCCGCCTTATT-TAAAC-----CAA-------CAC-TTTATA-------AC-ACGA----AACG-TTTTATTTCAATTTCTAAAGATCAGTC-ACTG-AGCAT--G-CGCAAAT-TCAACACTAGTGTCA--------AA--AG-GGTTGGTCAAATCGAACGCA
gi|10 : TCCCAAGATGGCGCGGGTATTAACCACAACCCCCGGAAGTGTGAA-AAATTGT-T--TTTTTTGCTTTTATTTTGGATCAGGAATGTTT-GCGCA-AACGAAAAAAG--TCT-----A--AA-AGATCATTACTTTTCTCCCT
gi|11 : agcgacacttgttagcgcgagtaatcgagttgtaatataaacgtccaaatttcgacagcactagtgtcgcactcagtttacgtgagtatattccccagtttacgcttggagtcaccagtgttGATAA-AAACACAAGAC--GGTAGTGTGAA-AT-TTTA-T--TT---TGCTTTTATTTTTTATCAGAAATGTGTAGTGTC-GATGGTAAAAGCTTTT----AA--AGTAATTTATGGCTCCT-TCCCTTTGGTTATTTCTTCTT-T-GACAC-CTTC-----------G-GG-ACC-GT-GCG---ATCT-CTCA-AACAATT-CCTT-GAA-ATGTTTCTTTACC-TAA-----AGAAAAGTAGTTTCTAAATTTA-GT-CAACT
gi|12 : GTTCCAAGATGACG-GGGTAT-AAACACAACAC--GGAAGTGTGAA-GA-TTGT-T--TT---TGCTTTCATTTTGTATTAGGAACGTGTAA-GTC-TTAAAACAAAG--TCT----AA--AA-TTATCACGACTTTT-CCCCTTTGATTATTTCTTCTT-T-GACTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATT-TCTT-G-A-ATTTTTTTTTACT-TA
gi|13 : agctggagttactagaTTTATGTGTGGTAA-GTT-CATTGGAC-ATAAATG-TTG--TTAAT-GCGCTTTACGTGCG-TC-CATTCCCGCCA-------AAC------AA-------CACATGTACATTAAATAAA-ATGA----GACG-TTTTATTTTGATTTCTGTGGTTCAGCC-ACTG-AGCAT--G-CGCAAAT-TCAA
gi|14 : TCATT--C-AA--ATC-TTTAATA-TGCTCATTCACTTCATATGTGGTAA-GTT-TATTAAAC-ATTCATG-CTG--TCAAAAG----------------ACA--CCCGCCATATT-TAAACCAACTCAA-------CAC-TATACA-------AC-ATGA----GACG-TTTTA
gi|15 : GTTCCAAGATGGCG-GGGTAT-AAACACAACCC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGCA-AACGAAAAAAG--TCT----AA--AA-AGATCATTACTTTTCTCCC
gi|16 : TTCCTTTAC----A-----C-AATGATGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAG--CT--GTAT--CATCATAAATAGTTTAAACAGGT-------GGGACGGACTCCCTAAC-----TTTGATT
gi|19 : acacAGTTCAGTC-ACTG-GGCTT--GATGCAAAT-TC-ACTCTAGTGTCACAAGCCT-AA--AGAGATTGGTT-AATCAAATGTA
gi|2 : gTTCAAGATAACA-GGGTAT-GAACACAACAC--AGAGATGTAAATAA-TTGTATAATT---TGCTTTTATTT-GTACCAGAAGAGTGAAGCGTTTGAT-AAAAAAG--TCC----AACAAA-ATATTATGGCTT-T-TGCTTTTGGTT-TCTCT-C-T-T-----C-AT-------------A-GG-AC--AT-GCA---ATTT-TTCA-GACAATTTCTTG-AAA-ATGTT-CTTCGCTGTAA-----AGAAAAGTGTTTTC--A----A-GT-CTACTTC----AGTAAA-TTGTG--------GAACTTT--G--C--CATCATAAATATTTTCAACAGAT-------GGGACGAATTCTTAAACATTAGTTTGATTAAATACAAAC-TGAATCG-CAAAGTCA-T--T-AA--ATCATTTAATA-TGCTCGTTCA-TTCATATGTGGTAA-A-T-CATTGAATAAATAATG-CTA--TCAAAA---CTTTT-TTGCATTCATA--TACTCT-TATT-TGAGC-----AAACGTTAAGCAC-TATACA-------AC-ATGA----GATG-TTtccag
gi|20 : gtgtgAGTTCAGTC-ACTG-GGCTT--G-TGCAAAT-TCAACTCTAGTGTCACAAGGCCTAA--AG-AGTTGGTT-AATCAAATGTA
gi|3 : g-TCCCTTTGGTTATTTCCTC-T-TTGACTC-CATCCAATAAATCATG-AA-ACC-AT-GCA---CTTT-CTCGCAACAATTTCCTTCAAA-ATGTTTATGGAAT-TAC-----A-AAAAGTGTTTTTTAA----A-GT-TAACTTTCA--AGTAAAATTATG--------GAAC-TT--A--T--CATCA-AGATATTT-AGGCAGAT-------GGGACG-ATTCCGTAACAT-AGTTT-ATTCGATACAATTGTGAATCG-CAAAG-CATT--A-AT--AAC-TC-AAT-----TC--TC-TTTCATATGAGGCAAAGTT-CATTGAAC-TTCAATAATTGATCCAAAAGCGCTTTTCTTGCG-TCACA--CCCG-CATATTCTAAAC-----AAA-------CAC-TATACA-------AG-GCAATTAGGGCGTTTTTATTT-AATGT-TAACGTTCAGTA-ACAGAAGCAA--G-AGC-AAT-TCAACTCTATAGTCAC-------GATTAG-GGTTGG
gi|4 : cTCTT--T-T-GGCTCCGTTC-----------G-GGTACC-ATTGCA---ATTT-C-AG-AGCAATTCCCTT-GAATGCGTTTCTTTACT-TAATA---A-AAAAGTAGTTTCTAA----ACGTTCAATCTC----AATAAG-TGGTG--------GAA--TT--G--TATCA-CATAAATATTTTCAACATATTCAGGGGGGGACGGATTCC-TA--GTTAGTTTGATTTGA-ACAAAC-TGAAACAACAAAGTCATT--TTAT--GTC-TTTAATACTGCTCATTAAAGTCATATGTGGTAA-ATTTCATTGAAC-ATTCATG-TTG--TCAAAAGTACTTTTGT--CT-CCACA--CC--CCATATT-TAAAC-----CAA-------CAC-TTCCAA-------ACAACGA-----ACA-TTTTATTTCAA-TTCTAAAGATCAATCAAATGAAGCACGGG-CGCAAATATCAAC-ATAGTGTCAC--------A--AG-GGTTGGTT-CATCAAA
gi|5 : TTCTT----T-GGCTC-GTTC-----------GAGG-ACCGAT-GCA---ATTTTCTAG-AGCAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTC----AATAAA-GTGTG--------GAA--TT--G--TATCATCATAAATATTTTCAACATAT-------GGGACGGATTCCCTAACGTTAGTTTGATTTGATACAAAC-TGAAACA-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAAGTCATATGTGGTAA-TTT-CATTGAAC-ATTCATG-TTG--TCAAAAGTACTT---TTGTC-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TTCACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGATCAATC-AATG-AGCAC--G-CGCAAAT-TCAACACTAGTGTCAC--------A--AG-GGTTGGTCAAATCAAA
gi|6 : G-AAC-AT-GCATGAATGT-TTCG-AACAATTCT-TT-GAA-ATACTTCTTTATC-TAACGAAAA-AAAAGTGTTT-CTAA----A-AT-CAACTTTTAAAAGTAAA-TTGTA--------GAA--TTATG--T--CTTCATAAATATTTTAAACAGAT-------GGGGCAGA-------------GTTTGATTAGACACAAAC-TGTATCA-TAAATTCATT--A-AT--ATC-TTTAAT---------------CATATGTGGTAA-TTG-CATAGAAC-ATTAATG-ATA--TCAAAAGCACTTTTCTTGTG-CCACA--CCCGCCATATC-TAAAC-----AAG-------CAC-TATGTA-------AC-ACGA----ACTG-TTTTATTT-AATTTCTAA-----AGTC-ACTG-AGCAT--G-CGCAAAT-TCAACTCTGGTGTCA--------AA--AG-GGTTATTTAAATCAAA
gi|7 : aCAACAT--GGAGGTGTGAA-A----GT-T--TT---TG-----A------ACTAAAAATATGTAGTGTA-GAT------------T----AAT-AA-ATATCATGGCCTCT-TCCCTTCAGTTCTTTCTTC-TGT-GGTTA-TTTC-----------G-GG-ACC-AT-GCA---CTTT-CTCA-AACAATTTTCTT-GAA-ATGTTTCTTCACT-TAA-----ACAAAAACGTTTTCTGA----A-GT-CAGCTTC----AGAATA-TTGTGAAAATGATGAA--CT--G--TGCCTTCATATAAATGTTGAACAAAT-------TGGATGGATTCCCTACTGTTAGATTGACTGGATAAGAAC-TAAATCA-C--------------T--ATC-TTTAATA-CCCAGATTCACTTTACATGTGGTAA-GTT-GATTGAAC-ATAAATG-TTG--TTAAATGCACTTTT
gi|8 : CCAAGATGATG-GGATA--AAATACAACGC--AGAAATGTGAA-AA-T-AT-T--TT---TGCTTTTATTTTGCATCAGAAATGCGTAGCGTC-CATAAAGAAAG--TCTTTTTAA--AA-A-ATCATGCCTTCT-TCCCTTTGGATATTTCCAC-T-TTGGCTC-CTTC-----------A-GG-ACC-GT-GAA---ATTT-CCCG-AACAATTCC-TT-GA---TTTTTTTTTACT-TCA-----A-AA--GTGTTTCCTAT----A-GT-CAACTTC----AGTAAA-TTTTG--------GA-----------------------ATTTTG------T-------G-------TTCATAAATATTAATTTGATTAAATACAAAT-TGAATCG-CAAAGCCATT--
gi|9 : TGCTTCTTTACC-TCA-----ACAAAAGCGTTTTCTGA----A-AT-CAGTTTT----AGAAAA-TTGTG--------GAA--CT--G--TGCCTTCATAAAAATGTTGAACAGAT-------GGGACAGATTCCCTGACGTTAGATTGATTGTATATAGAC-TGAATCA-TAAAGTCGTCAAT-ATCGATC-TTTGGTA-TGCTCATTCACTTCACATGTGGTGA-GTT-CATTGGAC-ATAAATG-TTG--TTAAACGCGC-TTTCATGTGTTCGTA--CCCgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTAAGGGTGCATCGATTAAGTGACATGAGTTGCATGAAATAACTGGAGTTTAAAAAATCCATTTTTCGACATAGTGTCACAGGGTGTGAATGTGCAAGTTTATT
Unaligned ( gi|18 ): ACTTGGAGGGCATTTGATTAAGCGACACGAGTTTCACGTGTAACTATAATTGTAAATTTAAAAACGTCCAATTTTCGACATTAGTGTC
Unaligned ( gi|21 ): GAGTAACTAGATTTGGAGATAAAACGTTCAATTTTCGACACTAGTGTCGCATGGGTATTACGCAAGG
Unaligned ( gi|22 ): ACTTTTGAGTTACGCGAGTTACAGGAGTTGCAAATAAAA
Alignments
lowQualScore : 111111 1111111 11 22222222222 2222222 1111 11111111 22 1111111 1111 11 111111111111111 1111111 11111 1 111 444444444 1
lowQualScore : 6 77 1 66 5 5 1 7777 888 1 3 0 000000 66 3333333 66 1 1 4 8 1 00 4 8 77 11111111111 4 4 4 4 777 4 4 4 1 4 4 3 1111111 1 7777 3 3 4444 4 44444444 99 55 77 1 1 3333333 3 0 2 0 1 4 4 1111 66 4 66 0 777 4 4 4 00 4 55 2 55 3 11 66 0 5 888888888888888 5 1 6666666 5 00000 5 9 2 2 5 0 000 5 5 5 666666666 77 5 5 0
lowQualScore : . .. . .. . . . .... ... . . . ...... .. ....... .. . . . . . .. . . .. ........... . . . . ... . . . . . . . ....... . .... . . .... . ........ .. .. .. . . ....... . . . . . . . .... .. . .. . ... . . . .. . .. . .. . .. .. . . ............... . . ....... . ..... . . . . . . ... . . . ......... .. . . .
lowQualScore : 7 44 0 99 0 0 4 8888 888 0 6 2 555555 99 9999999 99 0 1 2 9 4 00 4 9 33 11111111111 4 0 0 0 000 0 0 8 6 0 0 3 8888888 5 7777 6 6 0000 0 55555555 55 55 55 2 0 0000000 2 7 3 7 0 4 4 1111 11 4 33 8 111 0 0 0 99 0 55 4 33 9 88 11 4 0 222222222222222 0 0 2222222 0 99999 0 3 0 8 0 0 000 0 0 4 444444444 99 7 5 7
consensus : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
Reference ( family-1621 ) : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
gi|1 : GTTCCAAGATGGCG-GGGTAT-AAACATAATCC--ATAAGTGTGAA-AA-TTGT-C--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGTC-AACGAAAACAG--TCTA---G--A--AAGATCATTACTTTT-TCCCTTTGGTTATTTATTC-T-T-AGCTA-GTTC-----------G-GG-ACG-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTG----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATAGTTTCAACAGAT-------GGGACGGATTCCCTAACGTTCGTTTGATTTGATACAAAC-TGAAGCG-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAATTCATATATGGTAA-GTT-CATTGAAC-ATTCATG-TTG--TCAAAGGTACTTTTCTTGTC-TCACA--CCCGCCTTATT-TAAAC-----CAA-------CAC-TTTATA-------AC-ACGA----AACG-TTTTATTTCAATTTCTAAAGATCAGTC-ACTG-AGCAT--G-CGCAAAT-TCAACACTAGTGTCA--------AA--AG-GGTTGGTCAAATCGAACGCA
gi|10 : TCCCAAGATGGCGCGGGTATTAACCACAACCCCCGGAAGTGTGAA-AAATTGT-T--TTTTTTGCTTTTATTTTGGATCAGGAATGTTT-GCGCA-AACGAAAAAAG--TCT----A--A--AAGATCATTACTTTTCTCCCT
gi|11 : agcgacacttgttagcgcgagtaatcgagttgtaatataaacgtccaaatttcgacagcactagtgtcgcactcagtttacgtgagtatattccccagtttacgcttggagtcaccagtgttGATAA-AAACACAAGAC--GGTAGTGTGAA-AT-TTTA-T--TT---TGCTTTTATTTTTTATCAGAAATGTGTAGTGTC-GATGGTAAAAGCTTTTA---A--AGTAAT-TTATGGCTCCT-TCCCTTTGGTTATTTCTTCTT-T-GACAC-CTTC-----------G-GG-ACC-GT-GCG---ATCT-CTCA-AACAATT-CCTT-GAA-ATGTTTCTTTACC-TAA-----AGAAAAGTAGTTTCTAAATTTA-GT-CAACT
gi|12 : GTTCCAAGATGACG-GGGTAT-AAACACAACAC--GGAAGTGTGAA-GA-TTGT-T--TT---TGCTTTCATTTTGTATTAGGAACGTGTAA-GTC-TTAAAACAAAG--TCTA---A--A--ATTATCACGACTTTT-CCCCTTTGATTATTTCTTCTT-T-GACTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATT-TCTT-G-A-ATTTTTTTTTACT-TA
gi|13 : agctggagttactagaTTTATGTGTGGTAA-GTT-CATTGGAC-ATAAATG-TTG--TTAAT-GCGCTTTACGTGCG-TC-CATTCCCGCCA-------AAC------AA-------CACATGTACATTAAATAAA-ATGA----GACG-TTTTATTTTGATTTCTGTGGTTCAGCC-ACTG-AGCAT--G-CGCAAAT-TCAA
gi|14 : TCATT--C-AA--ATC-TTTAATA-TGCTCATTCACTTCATATGTGGTAA-GTT-TATTAAAC-ATTCATG-CTG--TCAAAAG----------------ACA--CCCGCCATATT-TAAACCAACTCAA-------CAC-TATACA-------AC-ATGA----GACG-TTTTA
gi|15 : GTTCCAAGATGGCG-GGGTAT-AAACACAACCC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGCA-AACGAAAAAAG--TCTA---A--A--AAGATCATTACTTTTCTCCC
gi|16 : TTCCTTTAC----A-----C-AATGATGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAG--CT--GTATCATCATAAATAGTTTAAACAGGT-------GGGACGGACTCCCTAAC-----TTTGATT
gi|19 : acacAGTTCAGTC-ACTG-GGCTT--GATGCAAAT-TCA-CTCTAGTGTCACAAGCCT-AA--AGAGATTGGTT-AATCAAATGTA
gi|2 : gTTCAAGATAACA-GGGTAT-GAACACAACAC--AGAGATGTAAATAA-TTGTATAATT---TGCTTTTATTT-GTACCAGAAGAGTGAAGCGTTTGAT-AAAAAAG--TCCA---ACAA--AATATTATGGCTT-T-TGCTTTTGGTT-TCTCT-C-T-T-----C-AT-------------A-GG-AC--AT-GCA---ATTT-TTCA-GACAATTTCTTG-AAA-ATGTT-CTTCGCTGTAA-----AGAAAAGTGTTTTC--A----A-GT-CTACTTC----AGTAAA-TTGTG--------GAACTTT--GC--CATCATAAATATTTTCAACAGAT-------GGGACGAATTCTTAAACATTAGTTTGATTAAATACAAAC-TGAATCG-CAAAGTCA-T--T-AA--ATCATTTAATA-TGCTCGTTCA-TTCATATGTGGTAA-A-T-CATTGAATAAATAATG-CTA--TCAAAA---CTTTT-TTGCATTCATA--TACTCT-TATT-TGAGC-----AAACGTTAAGCAC-TATACA-------AC-ATGA----GATG-TTtccag
gi|20 : gtgtgAGTTCAGTC-ACTG-GGCTT--G-TGCAAAT-TCAACTCTAGTGTCACAAGGCCTAA--AG-AGTTGGTT-AATCAAATGTA
gi|3 : g-TCCCTTTGGTTATTTCCTC-T-TTGACTC-CATCCAATAAATCATG-AA-ACC-AT-GCA---CTTT-CTCGCAACAATTTCCTTCAAA-ATGTTTATGGAAT-TAC-----A-AAAAGTGTTTTTTAA----A-GT-TAACTTTCA--AGTAAAATTATG--------GAAC-TT--AT--CATCA-AGATATTT-AGGCAGAT-------GGGACG-ATTCCGTAACAT-AGTTT-ATTCGATACAATTGTGAATCG-CAAAG-CATT--A-AT--AAC-TC-AAT-----TC--TC-TTTCATATGAGGCAAAGTT-CATTGAAC-TTCAATAATTGATCCAAAAGCGCTTTTCTTGCG-TCACA--CCCG-CATATTCTAAAC-----AAA-------CAC-TATACA-------AG-GCAATTAGGGCGTTTTTATTT-AATGT-TAACGTTCAGTA-ACAGAAGCAA--G-AGC-AAT-TCAACTCTATAGTCAC-------GATTAG-GGTTGG
gi|4 : cTCTT--T-T-GGCTCCGTTC-----------G-GGTACC-ATTGCA---ATTT-C-AG-AGCAATTCCCTT-GAATGCGTTTCTTTACT-TAATA---A-AAAAGTAGTTTCTAA----ACGTTCAATCTC----AATAAG-TGGTG--------GAA--TT--GTATCA-CATAAATATTTTCAACATATTCAGGGGGGGACGGATTCC-TA--GTTAGTTTGATTTGA-ACAAAC-TGAAACAACAAAGTCATT--TTAT--GTC-TTTAATACTGCTCATTAAAGTCATATGTGGTAA-ATTTCATTGAAC-ATTCATG-TTG--TCAAAAGTACTTTTGT--CT-CCACA--CC--CCATATT-TAAAC-----CAA-------CAC-TTCCAA-------ACAACGA-----ACA-TTTTATTTCAA-TTCTAAAGATCAATCAAATGAAGCACGGG-CGCAAATATCAAC-ATAGTGTCAC--------A--AG-GGTTGGTT-CATCAAA
gi|5 : TTCTT----T-GGCTC-GTTC-----------GAGG-ACCGAT-GCA---ATTTTCTAG-AGCAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTC----AATAAA-GTGTG--------GAA--TT--GTATCATCATAAATATTTTCAACATAT-------GGGACGGATTCCCTAACGTTAGTTTGATTTGATACAAAC-TGAAACA-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAAGTCATATGTGGTAA-TTT-CATTGAAC-ATTCATG-TTG--TCAAAAGTACTT---TTGTC-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TTCACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGATCAATC-AATG-AGCAC--G-CGCAAAT-TCAACACTAGTGTCAC--------A--AG-GGTTGGTCAAATCAAA
gi|6 : G-AAC-AT-GCATGAATGT-TTCG-AACAATTCT-TT-GAA-ATACTTCTTTATC-TAACGAAAA-AAAAGTGTTT-CTAA----A-AT-CAACTTTTAAAAGTAAA-TTGTA--------GAA--TTATGT--CTTCATAAATATTTTAAACAGAT-------GGGGCAGA-------------GTTTGATTAGACACAAAC-TGTATCA-TAAATTCATT--A-AT--ATC-TTTAAT---------------CATATGTGGTAA-TTG-CATAGAAC-ATTAATG-ATA--TCAAAAGCACTTTTCTTGTG-CCACA--CCCGCCATATC-TAAAC-----AAG-------CAC-TATGTA-------AC-ACGA----ACTG-TTTTATTT-AATTTCTAA-----AGTC-ACTG-AGCAT--G-CGCAAAT-TCAACTCTGGTGTCA--------AA--AG-GGTTATTTAAATCAAA
gi|7 : aCAACAT--GGAGGTGTGAA-AG-TT--------------------TTTGAACTAAAAATATGTAGTGTA-GAT------------TA---AT-A--AATATCATGGCCTCT-TCCCTTCAGTTCTTTCTTC-TGT-GGTTA-TTTC-----------G-GG-ACC-AT-GCA---CTTT-CTCA-AACAATTTTCTT-GAA-ATGTTTCTTCACT-TAA-----ACAAAAACGTTTTCTGA----A-GT-CAGCTTC----AGAATA-TTGTGAAAATGATGAA--CT--GTGCCTTCATATAAATGTTGAACAAAT-------TGGATGGATTCCCTACTGTTAGATTGACTGGATAAGAAC-TAAATCA-C--------------T--ATC-TTTAATA-CCCAGATTCACTTTACATGTGGTAA-GTT-GATTGAAC-ATAAATG-TTG--TTAAATGCACTTTT
gi|8 : CCAAGATGATG-GGATA--AAATACAACGC--AGAAATGTGAA-AA-T-AT-T--TT---TGCTTTTATTTTGCATCAGAAATGCGTAGCGTC-CATAAAGAAAG--TCTTTTTA--A--AAAATCATGCCTTCT-TCCCTTTGGATATTTCCAC-T-TTGGCTC-CTTC-----------A-GG-ACC-GT-GAA---ATTT-CCCG-AACAATTCC-TT-GA---TTTTTTTTTACT-TCA-----A-AA--GTGTTTCCTAT----A-GT-CAACTTC----AGTAAA-TTTTG--------GA---------------------ATTTTG------T-------G-------TTCATAAATATTAATTTGATTAAATACAAAT-TGAATCG-CAAAGCCATT--
gi|9 : TGCTTCTTTACC-TCA-----ACAAAAGCGTTTTCTGA----A-AT-CAGTTTT----AGAAAA-TTGTG--------GAA--CT--GTGCCTTCATAAAAATGTTGAACAGAT-------GGGACAGATTCCCTGACGTTAGATTGATTGTATATAGAC-TGAATCA-TAAAGTCGTCAAT-ATCGATC-TTTGGTA-TGCTCATTCACTTCACATGTGGTGA-GTT-CATTGGAC-ATAAATG-TTG--TTAAACGCGC-TTTCATGTGTTCGTA--CCCgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTAAGGGTGCATCGATTAAGTGACATGAGTTGCATGAAATAACTGGAGTTTAAAAAATCCATTTTTCGACATAGTGTCACAGGGTGTGAATGTGCAAGTTTATT
Unaligned ( gi|18 ): ACTTGGAGGGCATTTGATTAAGCGACACGAGTTTCACGTGTAACTATAATTGTAAATTTAAAAACGTCCAATTTTCGACATTAGTGTC
Unaligned ( gi|21 ): GAGTAACTAGATTTGGAGATAAAACGTTCAATTTTCGACACTAGTGTCGCATGGGTATTACGCAAGG
Unaligned ( gi|22 ): ACTTTTGAGTTACGCGAGTTACAGGAGTTGCAAATAAAA
Alignments
lowQualScore : 111111 1111111 11 22222222222 2222222 1111 11111111 22 1111111 1111 11 111111111111111 1111111 11111 1 111 444444444 1
lowQualScore : 6 77 1 66 5 5 1 7777 888 1 3 0 000000 66 3333333 66 1 1 4 8 1 00 4 8 77 11111111111 4 4 4 4 777 4 4 4 1 4 4 3 1111111 1 7777 3 3 4444 4 44444444 99 55 77 1 1 3333333 3 0 2 0 1 4 4 1111 66 4 66 0 777 4 4 4 00 4 55 2 55 3 11 66 0 5 888888888888888 5 1 6666666 5 00000 5 9 2 2 5 0 000 5 5 5 666666666 77 5 5 0
lowQualScore : . .. . .. . . . .... ... . . . ...... .. ....... .. . . . . . .. . . .. ........... . . . . ... . . . . . . . ....... . .... . . .... . ........ .. .. .. . . ....... . . . . . . . .... .. . .. . ... . . . .. . .. . .. . .. .. . . ............... . . ....... . ..... . . . . . . ... . . . ......... .. . . .
lowQualScore : 7 44 0 99 0 0 4 8888 888 0 6 2 555555 99 9999999 99 0 1 2 9 4 00 4 9 33 11111111111 4 0 0 0 000 0 0 8 6 0 0 3 8888888 5 7777 6 6 0000 0 55555555 55 55 55 2 0 0000000 2 7 3 7 0 4 4 1111 11 4 33 8 111 0 0 0 99 0 55 4 33 9 88 11 4 0 222222222222222 0 0 2222222 0 99999 0 3 0 8 0 0 000 0 0 4 444444444 99 7 5 7
consensus : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
Reference ( family-1621 ) : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
gi|1 : GTTCCAAGATGGCG-GGGTAT-AAACATAATCC--ATAAGTGTGAA-AA-TTGT-C--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGTC-AACGAAAACAG--TCTA---G--A--AAGATCATTACTTTT-TCCCTTTGGTTATTTATTC-T-T-AGCTA-GTTC-----------G-GG-ACG-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTG----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATAGTTTCAACAGAT-------GGGACGGATTCCCTAACGTTCGTTTGATTTGATACAAAC-TGAAGCG-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAATTCATATATGGTAA-GTT-CATTGAAC-ATTCATG-TTG--TCAAAGGTACTTTTCTTGTC-TCACA--CCCGCCTTATT-TAAAC-----CAA-------CAC-TTTATA-------AC-ACGA----AACG-TTTTATTTCAATTTCTAAAGATCAGTC-ACTG-AGCAT--G-CGCAAAT-TCAACACTAGTGTCA--------AA--AG-GGTTGGTCAAATCGAACGCA
gi|10 : TCCCAAGATGGCGCGGGTATTAACCACAACCCCCGGAAGTGTGAA-AAATTGT-T--TTTTTTGCTTTTATTTTGGATCAGGAATGTTT-GCGCA-AACGAAAAAAG--TCT----A--A--AAGATCATTACTTTTCTCCCT
gi|11 : agcgacacttgttagcgcgagtaatcgagttgtaatataaacgtccaaatttcgacagcactagtgtcgcactcagtttacgtgagtatattccccagtttacgcttggagtcaccagtgttGATAA-AAACACAAGAC--GGTAGTGTGAA-AT-TTTA-T--TT---TGCTTTTATTTTTTATCAGAAATGTGTAGTGTC-GATGGTAAAAGCTTTTA---A--AGTAAT-TTATGGCTCCT-TCCCTTTGGTTATTTCTTCTT-T-GACAC-CTTC-----------G-GG-ACC-GT-GCG---ATCT-CTCA-AACAATT-CCTT-GAA-ATGTTTCTTTACC-TAA-----AGAAAAGTAGTTTCTAAATTTA-GT-CAACT
gi|12 : GTTCCAAGATGACG-GGGTAT-AAACACAACAC--GGAAGTGTGAA-GA-TTGT-T--TT---TGCTTTCATTTTGTATTAGGAACGTGTAA-GTC-TTAAAACAAAG--TCTA---A--A--ATTATCACGACTTTT-CCCCTTTGATTATTTCTTCTT-T-GACTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATT-TCTT-G-A-ATTTTTTTTTACT-TA
gi|13 : agctggagttactagaTTTATGTGTGGTAA-GTT-CATTGGAC-ATAAATG-TTG--TTAAT-GCGCTTTACGTGCG-TC-CATTCCCGCCA-------AAC------AA-------CACATGTACATTAAATAAA-ATGA----GACG-TTTTATTTTGATTTCTGTGGTTCAGCC-ACTG-AGCAT--G-CGCAAAT-TCAA
gi|14 : TCATT--C-AA--ATC-TTTAATA-TGCTCATTCACTTCATATGTGGTAA-GTT-TATTAAAC-ATTCATG-CTG--TCAAAAG----------------ACA--CCCGCCATATT-TAAACCAACTCAA-------CAC-TATACA-------AC-ATGA----GACG-TTTTA
gi|15 : GTTCCAAGATGGCG-GGGTAT-AAACACAACCC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGCA-AACGAAAAAAG--TCTA---A--A--AAGATCATTACTTTTCTCCC
gi|16 : TTCCTTTAC----A-----C-AATGATGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAG--CT--GTATCATCATAAATAGTTTAAACAGGT-------GGGACGGACTCCCTAAC-----TTTGATT
gi|19 : acacAGTTCAGTC-ACTG-GGCTT--GATGCAAAT-TCA-CTCTAGTGTCACAAGCCT-AA--AGAGATTGGTT-AATCAAATGTA
gi|2 : gTTCAAGATAACA-GGGTAT-GAACACAACAC--AGAGATGTAAATAA-TTGTATAATT---TGCTTTTATTT-GTACCAGAAGAGTGAAGCGTTTGAT-AAAAAAG--TCCA---ACAA--AATATTATGGCTT-T-TGCTTTTGGTT-TCTCT-C-T-T-----C-AT-------------A-GG-AC--AT-GCA---ATTT-TTCA-GACAATTTCTTG-AAA-ATGTT-CTTCGCTGTAA-----AGAAAAGTGTTTTC--A----A-GT-CTACTTC----AGTAAA-TTGTG--------GAACTTT--GC--CATCATAAATATTTTCAACAGAT-------GGGACGAATTCTTAAACATTAGTTTGATTAAATACAAAC-TGAATCG-CAAAGTCA-T--T-AA--ATCATTTAATA-TGCTCGTTCA-TTCATATGTGGTAA-A-T-CATTGAATAAATAATG-CTA--TCAAAA---CTTTT-TTGCATTCATA--TACTCT-TATT-TGAGC-----AAACGTTAAGCAC-TATACA-------AC-ATGA----GATG-TTtccag
gi|20 : gtgtgAGTTCAGTC-ACTG-GGCTT--G-TGCAAAT-TCAACTCTAGTGTCACAAGGCCTAA--AG-AGTTGGTT-AATCAAATGTA
gi|3 : g-TCCCTTTGGTTATTTCCTC-T-TTGACTC-CATCCAATAAATCATG-AA-ACC-AT-GCA---CTTT-CTCGCAACAATTTCCTTCAAA-ATGTTTATGGAAT-TAC-----A-AAAAGTGTTTTTTAA----A-GT-TAACTTTCA--AGTAAAATTATG--------GAAC-TT--AT--CATCA-AGATATTT-AGGCAGAT-------GGGACG-ATTCCGTAACAT-AGTTT-ATTCGATACAATTGTGAATCG-CAAAG-CATT--A-AT--AAC-TC-AAT-----TC--TC-TTTCATATGAGGCAAAGTT-CATTGAAC-TTCAATAATTGATCCAAAAGCGCTTTTCTTGCG-TCACA--CCCG-CATATTCTAAAC-----AAA-------CAC-TATACA-------AG-GCAATTAGGGCGTTTTTATTT-AATGT-TAACGTTCAGTA-ACAGAAGCAA--G-AGC-AAT-TCAACTCTATAGTCAC-------GATTAG-GGTTGG
gi|4 : cTCTT--T-T-GGCTCCGTTC-----------G-GGTACC-ATTGCA---ATTT-C-AG-AGCAATTCCCTT-GAATGCGTTTCTTTACT-TAATA---A-AAAAGTAGTTTCTAA----ACGTTCAATCTC----AATAAG-TGGTG--------GAA--TT--GTATCA-CATAAATATTTTCAACATATTCAGGGGGGGACGGATTCC-TA--GTTAGTTTGATTTGA-ACAAAC-TGAAACAACAAAGTCATT--TTAT--GTC-TTTAATACTGCTCATTAAAGTCATATGTGGTAA-ATTTCATTGAAC-ATTCATG-TTG--TCAAAAGTACTTTTGT--CT-CCACA--CC--CCATATT-TAAAC-----CAA-------CAC-TTCCAA-------ACAACGA-----ACA-TTTTATTTCAA-TTCTAAAGATCAATCAAATGAAGCACGGG-CGCAAATATCAAC-ATAGTGTCAC--------A--AG-GGTTGGTT-CATCAAA
gi|5 : TTCTT----T-GGCTC-GTTC-----------GAGG-ACCGAT-GCA---ATTTTCTAG-AGCAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTC----AATAAA-GTGTG--------GAA--TT--GTATCATCATAAATATTTTCAACATAT-------GGGACGGATTCCCTAACGTTAGTTTGATTTGATACAAAC-TGAAACA-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAAGTCATATGTGGTAA-TTT-CATTGAAC-ATTCATG-TTG--TCAAAAGTACTT---TTGTC-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TTCACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGATCAATC-AATG-AGCAC--G-CGCAAAT-TCAACACTAGTGTCAC--------A--AG-GGTTGGTCAAATCAAA
gi|6 : G-AAC-AT-GCATGAATGT-TTCG-AACAATTCT-TT-GAA-ATACTTCTTTATC-TAACGAAAA-AAAAGTGTTT-CTAA----A-AT-CAACTTTTAAAAGTAAA-TTGTA--------GAA--TTATGT--CTTCATAAATATTTTAAACAGAT-------GGGGCAGA-------------GTTTGATTAGACACAAAC-TGTATCA-TAAATTCATT--A-AT--ATC-TTTAAT---------------CATATGTGGTAA-TTG-CATAGAAC-ATTAATG-ATA--TCAAAAGCACTTTTCTTGTG-CCACA--CCCGCCATATC-TAAAC-----AAG-------CAC-TATGTA-------AC-ACGA----ACTG-TTTTATTT-AATTTCTAA-----AGTC-ACTG-AGCAT--G-CGCAAAT-TCAACTCTGGTGTCA--------AA--AG-GGTTATTTAAATCAAA
gi|7 : aCAACAT--GGAGGTGTGAA-AG-TT--------------------TTTGAACTAAAAATATGTAGTGTA-GAT------------TA---AT-A--AATATCATGGCCTCT-TCCCTTCAGTTCTTTCTTC-TGT-GGTTA-TTTC-----------G-GG-ACC-AT-GCA---CTTT-CTCA-AACAATTTTCTT-GAA-ATGTTTCTTCACT-TAA-----ACAAAAACGTTTTCTGA----A-GT-CAGCTTC----AGAATA-TTGTGAAAATGATGAA--CT--GTGCCTTCATATAAATGTTGAACAAAT-------TGGATGGATTCCCTACTGTTAGATTGACTGGATAAGAAC-TAAATCA-C--------------T--ATC-TTTAATA-CCCAGATTCACTTTACATGTGGTAA-GTT-GATTGAAC-ATAAATG-TTG--TTAAATGCACTTTT
gi|8 : CCAAGATGATG-GGATA--AAATACAACGC--AGAAATGTGAA-AA-T-AT-T--TT---TGCTTTTATTTTGCATCAGAAATGCGTAGCGTC-CATAAAGAAAG--TCTTTTTA--A--AAAATCATGCCTTCT-TCCCTTTGGATATTTCCAC-T-TTGGCTC-CTTC-----------A-GG-ACC-GT-GAA---ATTT-CCCG-AACAATTCC-TT-GA---TTTTTTTTTACT-TCA-----A-AA--GTGTTTCCTAT----A-GT-CAACTTC----AGTAAA-TTTTG--------GA---------------------ATTTTG------T-------G-------TTCATAAATATTAATTTGATTAAATACAAAT-TGAATCG-CAAAGCCATT--
gi|9 : TGCTTCTTTACC-TCA-----ACAAAAGCGTTTTCTGA----A-AT-CAGTTTT----AGAAAA-TTGTG--------GAA--CT--GTGCCTTCATAAAAATGTTGAACAGAT-------GGGACAGATTCCCTGACGTTAGATTGATTGTATATAGAC-TGAATCA-TAAAGTCGTCAAT-ATCGATC-TTTGGTA-TGCTCATTCACTTCACATGTGGTGA-GTT-CATTGGAC-ATAAATG-TTG--TTAAACGCGC-TTTCATGTGTTCGTA--CCCgaat
blockSeqs : C TT C CC T A G ATAA TTT G A AAACG CT TTTTA GT G A T C A CT G T CG CAATAAATCAT A T G T TGA T C T C C T G CGAAAA T ATTT C T TAAA A AAAATGAT CT AT AT A A TCAGGGG C A A G A AAT CG A AC CAC A T A A AT A CG C AT TT C AAACGTTAAG A G TTAAATA A TTAGG T T G T A A CGG A A T CAAGGCCTA TT A A
blockSeqs : . A A . . . T T . T A CGATG . AACA . T G C C A CT . T C . . . . . . . . T C . . . TAA T . . . CA . . C . AT A C . T A C . . TT . . A AAA . . . . . A CG C GT . . CAACTCAA . A . . G . C A T . A T . . T CAAGCCTA . . A
blockSeqs : . T A . . . G T . T T CTTAA . AAT . T A T . A C . . G . . . . . . . . C T . . . AG T . . . . . . . . AT A A . G G T . . C . . A AAA . . . . . A TA G G . . AAA . A . . G . C A T . . T . . T CG . . .
blockSeqs : . T C . . . G T . G A AAACG . AA . G A T . C C . . A . . . . . . . . C C . . . AG T . . . . . . . . GC A C . C G T . . T . . A CAC . . . . . A TA C G . . CAA . A . . G . . C T . . T . . A C . . .
blockSeqs : . T A . . . G T . T A TTGAT . AA . T G C . A C . . C . . . . . . . . C C . . . AC T . . . . . . . . GC A C . C G A . . A . . A CAC . . . . . A CA C T . . CAA . T . . G . . A A . . A . . T C . . .
blockSeqs : . A . . . A T . A A CCATA . AA . T G C . . C . . G . . . . . . . . T C . . . AC A . . . . . . . . . T A . T A G . . T . . A CA . . . . . A CA . C . . AAG . T . . A . A A . . C . . . A . .
blockSeqs : G . . . . . . C . AGAT . A . A C . . . . . T . . . . . . . . C C . . . C T . . . . . . . . . T G . C G A . . A . . . CT . . . . . T CG . G . . AA . A . . . . . . . . T . .
blockSeqs : . . . . C . . . . . . . . . . . . . A C . . . . . . . . . T G . . . G . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . A T . . . . . . . . . . G . . . . . . . . . .
blockSeqs : . A . . . .
blockSeqs : .
blockSeqCons : A****** AT
originalCons : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GT--CATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
finalCons : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAAA------AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAA--TT--GTATCATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTAAGGGTGCATCGATTAAGTGACATGAGTTGCATGAAATAACTGGAGTTTAAAAAATCCATTTTTCGACATAGTGTCACAGGGTGTGAATGTGCAAGTTTATT
Unaligned ( gi|18 ): ACTTGGAGGGCATTTGATTAAGCGACACGAGTTTCACGTGTAACTATAATTGTAAATTTAAAAACGTCCAATTTTCGACATTAGTGTC
Unaligned ( gi|21 ): GAGTAACTAGATTTGGAGATAAAACGTTCAATTTTCGACACTAGTGTCGCATGGGTATTACGCAAGG
Unaligned ( gi|22 ): ACTTTTGAGTTACGCGAGTTACAGGAGTTGCAAATAAAA
Alignments
lowQualScore : 111111 1111111 11 22222222222 2222222 1111 11111111 1111111 1111 11 111111111111111 1111111 11111 1 111 444444444 1
lowQualScore : 6 77 1 66 5 5 3 7777 888 1 3 0 111111 66 3333333 66 1 1 4 8 1 00 4 8 77 11111111111 4 4 4 4 777 4 4 4 1 4 4 3 1111111 1 7777 3 3 4444 4 44444444 1 3 1 1 4444444 2 0 2 0 1 4 4 1111 66 4 66 0 777 4 4 4 00 4 55 2 55 3 11 66 0 5 888888888888888 5 1 6666666 5 00000 5 9 2 2 5 0 000 5 5 5 666666666 77 5 5 0
lowQualScore : . .. . .. . . . .... ... . . . ...... .. ....... .. . . . . . .. . . .. ........... . . . . ... . . . . . . . ....... . .... . . .... . ........ . . . . ....... . . . . . . . .... .. . .. . ... . . . .. . .. . .. . .. .. . . ............... . . ....... . ..... . . . . . . ... . . . ......... .. . . .
lowQualScore : 7 44 0 99 0 0 2 8888 888 0 6 2 666666 99 9999999 99 0 1 2 9 4 00 4 9 33 11111111111 4 0 0 0 000 0 0 8 6 0 0 3 8888888 5 7777 6 6 0000 0 55555555 6 4 4 0 4444444 9 7 3 7 0 4 4 1111 11 4 33 8 111 0 0 0 99 0 55 4 33 9 88 11 4 0 222222222222222 0 0 2222222 0 99999 0 3 0 8 0 0 000 0 0 4 444444444 99 7 5 7
consensus : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAACTGTGTCATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
Reference ( family-1621 ) : GTTCCAAGATGGCG-GGGTAT-AAACACAACNC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGNATCAGGAATGTGTAGCGTC-GACGAAAAAAG--TCTA---A--A--AANATCATGGCTTCT-TCCCTTTGGTTATTTCTTC-T-T-GGCTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAATTGTATCATCATAAATATTTTNAACAGAT-------GGGACGGATTCCCTAACGTTAGTTTGATTNGATACAAAC-TGAATCG-CAAAGTCATT--T-AT--ATC-TTTAATA-TGCTCATTCANTTCATATGTGGTAA-GTT-CATTGAAC-ATTAATG-TTG--TCAAAAGCGCTTTTCTTGCG-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TNTACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGNTCAGTC-ACTG-AGCAC--G-CGCAAAT-TCAACTCTAGTGTCAC-------AA--AG-GGTTGGTTAAATCAAACGTA
gi|1 : GTTCCAAGATGGCG-GGGTAT-AAACATAATCC--ATAAGTGTGAA-AA-TTGT-C--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGTC-AACGAAAACAG--TCTA---G--A--AAGATCATTACTTTT-TCCCTTTGGTTATTTATTC-T-T-AGCTA-GTTC-----------G-GG-ACG-AT-GCA---ATTT-CTCG-AACAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTG----AGTAAA-TTGTG--------GAATTGT--CATCATAAATAGTTTCAACAGAT-------GGGACGGATTCCCTAACGTTCGTTTGATTTGATACAAAC-TGAAGCG-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAATTCATATATGGTAA-GTT-CATTGAAC-ATTCATG-TTG--TCAAAGGTACTTTTCTTGTC-TCACA--CCCGCCTTATT-TAAAC-----CAA-------CAC-TTTATA-------AC-ACGA----AACG-TTTTATTTCAATTTCTAAAGATCAGTC-ACTG-AGCAT--G-CGCAAAT-TCAACACTAGTGTCA--------AA--AG-GGTTGGTCAAATCGAACGCA
gi|10 : TCCCAAGATGGCGCGGGTATTAACCACAACCCCCGGAAGTGTGAA-AAATTGT-T--TTTTTTGCTTTTATTTTGGATCAGGAATGTTT-GCGCA-AACGAAAAAAG--TCT----A--A--AAGATCATTACTTTTCTCCCT
gi|11 : agcgacacttgttagcgcgagtaatcgagttgtaatataaacgtccaaatttcgacagcactagtgtcgcactcagtttacgtgagtatattccccagtttacgcttggagtcaccagtgttGATAA-AAACACAAGAC--GGTAGTGTGAA-AT-TTTA-T--TT---TGCTTTTATTTTTTATCAGAAATGTGTAGTGTC-GATGGTAAAAGCTTTTA---A--AGTAAT-TTATGGCTCCT-TCCCTTTGGTTATTTCTTCTT-T-GACAC-CTTC-----------G-GG-ACC-GT-GCG---ATCT-CTCA-AACAATT-CCTT-GAA-ATGTTTCTTTACC-TAA-----AGAAAAGTAGTTTCTAAATTTA-GT-CAACT
gi|12 : GTTCCAAGATGACG-GGGTAT-AAACACAACAC--GGAAGTGTGAA-GA-TTGT-T--TT---TGCTTTCATTTTGTATTAGGAACGTGTAA-GTC-TTAAAACAAAG--TCTA---A--A--ATTATCACGACTTTT-CCCCTTTGATTATTTCTTCTT-T-GACTC-GTTC-----------G-GG-ACC-AT-GCA---ATTT-CTCG-AACAATT-TCTT-G-A-ATTTTTTTTTACT-TA
gi|13 : agctggagttactagaTTTATGTGTGGTAA-GTT-CATTGGAC-ATAAATG-TTG--TTAAT-GCGCTTTACGTGCG-TC-CATTCCCGCCA-------AAC------AA-------CACATGTACATTAAATAAA-ATGA----GACG-TTTTATTTTGATTTCTGTGGTTCAGCC-ACTG-AGCAT--G-CGCAAAT-TCAA
gi|14 : TCATT--C-AA--ATC-TTTAATA-TGCTCATTCACTTCATATGTGGTAA-GTT-TATTAAAC-ATTCATG-CTG--TCAAAAG----------------ACA--CCCGCCATATT-TAAACCAACTCAA-------CAC-TATACA-------AC-ATGA----GACG-TTTTA
gi|15 : GTTCCAAGATGGCG-GGGTAT-AAACACAACCC--GGAAGTGTGAA-AA-TTGT-T--TT---TGCTTTTATTTTGGATCAGGAATGTTTTGCGCA-AACGAAAAAAG--TCTA---A--A--AAGATCATTACTTTTCTCCC
gi|16 : TTCCTTTAC----A-----C-AATGATGTTTTCTAA----A-GT-CAACTTC----AGTAAA-TTGTG--------GAGCTGTATCATCATAAATAGTTTAAACAGGT-------GGGACGGACTCCCTAAC-----TTTGATT
gi|19 : acacAGTTCAGTC-ACTG-GGCTT--GATGCAAAT-TCA-CTCTAGTGTCACAAGCCT-AA--AGAGATTGGTT-AATCAAATGTA
gi|2 : gTTCAAGATAACA-GGGTAT-GAACACAACAC--AGAGATGTAAATAA-TTGTATAATT---TGCTTTTATTT-GTACCAGAAGAGTGAAGCGTTTGAT-AAAAAAG--TCCA---ACAA--AATATTATGGCTT-T-TGCTTTTGGTT-TCTCT-C-T-T-----C-AT-------------A-GG-AC--AT-GCA---ATTT-TTCA-GACAATTTCTTG-AAA-ATGTT-CTTCGCTGTAA-----AGAAAAGTGTTTTC--A----A-GT-CTACTTC----AGTAAA-TTGTG--------GAACTTTGCCATCATAAATATTTTCAACAGAT-------GGGACGAATTCTTAAACATTAGTTTGATTAAATACAAAC-TGAATCG-CAAAGTCA-T--T-AA--ATCATTTAATA-TGCTCGTTCA-TTCATATGTGGTAA-A-T-CATTGAATAAATAATG-CTA--TCAAAA---CTTTT-TTGCATTCATA--TACTCT-TATT-TGAGC-----AAACGTTAAGCAC-TATACA-------AC-ATGA----GATG-TTtccag
gi|20 : gtgtgAGTTCAGTC-ACTG-GGCTT--G-TGCAAAT-TCAACTCTAGTGTCACAAGGCCTAA--AG-AGTTGGTT-AATCAAATGTA
gi|3 : g-TCCCTTTGGTTATTTCCTC-T-TTGACTC-CATCCAATAAATCATG-AA-ACC-AT-GCA---CTTT-CTCGCAACAATTTCCTTCAAA-ATGTTTATGGAAT-TAC-----A-AAAAGTGTTTTTTAA----A-GT-TAACTTTCA--AGTAAAATTATG--------GAACT-TATCATCA-AGATATTT-AGGCAGAT-------GGGACG-ATTCCGTAACAT-AGTTT-ATTCGATACAATTGTGAATCG-CAAAG-CATT--A-AT--AAC-TC-AAT-----TC--TC-TTTCATATGAGGCAAAGTT-CATTGAAC-TTCAATAATTGATCCAAAAGCGCTTTTCTTGCG-TCACA--CCCG-CATATTCTAAAC-----AAA-------CAC-TATACA-------AG-GCAATTAGGGCGTTTTTATTT-AATGT-TAACGTTCAGTA-ACAGAAGCAA--G-AGC-AAT-TCAACTCTATAGTCAC-------GATTAG-GGTTGG
gi|4 : cTCTT--T-T-GGCTCCGTTC-----------G-GGTACC-ATTGCA---ATTT-C-AG-AGCAATTCCCTT-GAATGCGTTTCTTTACT-TAATA---A-AAAAGTAGTTTCTAA----ACGTTCAATCTC----AATAAG-TGGTG--------GAATTGTATCA-CATAAATATTTTCAACATATTCAGGGGGGGACGGATTCC-TA--GTTAGTTTGATTTGA-ACAAAC-TGAAACAACAAAGTCATT--TTAT--GTC-TTTAATACTGCTCATTAAAGTCATATGTGGTAA-ATTTCATTGAAC-ATTCATG-TTG--TCAAAAGTACTTTTGT--CT-CCACA--CC--CCATATT-TAAAC-----CAA-------CAC-TTCCAA-------ACAACGA-----ACA-TTTTATTTCAA-TTCTAAAGATCAATCAAATGAAGCACGGG-CGCAAATATCAAC-ATAGTGTCAC--------A--AG-GGTTGGTT-CATCAAA
gi|5 : TTCTT----T-GGCTC-GTTC-----------GAGG-ACCGAT-GCA---ATTTTCTAG-AGCAATTCCCTT-GAA-ATGTTTCTTTACT-TAA-----A-AAAAGTGTTTACTAA----C-GT-CAACTTC----AATAAA-GTGTG--------GAATTGTATCATCATAAATATTTTCAACATAT-------GGGACGGATTCCCTAACGTTAGTTTGATTTGATACAAAC-TGAAACA-CAAAGTCATT--T-AT--GTC-TTTAATA-TGCTCATTAAAGTCATATGTGGTAA-TTT-CATTGAAC-ATTCATG-TTG--TCAAAAGTACTT---TTGTC-TCACA--CCCGCCATATT-TAAAC-----CAA-------CAC-TTCACA-------AC-ACGA----GACG-TTTTATTTCAATTTCTAAAGATCAATC-AATG-AGCAC--G-CGCAAAT-TCAACACTAGTGTCAC--------A--AG-GGTTGGTCAAATCAAA
gi|6 : G-AAC-AT-GCATGAATGT-TTCG-AACAATTCT-TT-GAA-ATACTTCTTTATC-TAACGAAAA-AAAAGTGTTT-CTAA----A-AT-CAACTTTTAAAAGTAAA-TTGTA--------GAATTATGTCTTCATAAATATTTTAAACAGAT-------GGGGCAGA-------------GTTTGATTAGACACAAAC-TGTATCA-TAAATTCATT--A-AT--ATC-TTTAAT---------------CATATGTGGTAA-TTG-CATAGAAC-ATTAATG-ATA--TCAAAAGCACTTTTCTTGTG-CCACA--CCCGCCATATC-TAAAC-----AAG-------CAC-TATGTA-------AC-ACGA----ACTG-TTTTATTT-AATTTCTAA-----AGTC-ACTG-AGCAT--G-CGCAAAT-TCAACTCTGGTGTCA--------AA--AG-GGTTATTTAAATCAAA
gi|7 : aCAACAT--GGAGGTGTGAA-AG-T--------------------TTTTGAACTAAAAATATGTAGTGTA-GA------------TTA---AT-A--AATATCATGGCCTCT-TCCCTTCAGTTCTTTCTTC-TGT-GGTTA-TTTC-----------G-GG-ACC-AT-GCA---CTTT-CTCA-AACAATTTTCTT-GAA-ATGTTTCTTCACT-TAA-----ACAAAAACGTTTTCTGA----A-GT-CAGCTTC----AGAATA-TTGTGAAAATGATGAACTGTGCCTTCATATAAATGTTGAACAAAT-------TGGATGGATTCCCTACTGTTAGATTGACTGGATAAGAAC-TAAATCA-C--------------T--ATC-TTTAATA-CCCAGATTCACTTTACATGTGGTAA-GTT-GATTGAAC-ATAAATG-TTG--TTAAATGCACTTTT
gi|8 : CCAAGATGATG-GGATA--AAATACAACGC--AGAAATGTGAA-AA-T-AT-T--TT---TGCTTTTATTTTGCATCAGAAATGCGTAGCGTC-CATAAAGAAAG--TCTTTTTA--A--AAAATCATGCCTTCT-TCCCTTTGGATATTTCCAC-T-TTGGCTC-CTTC-----------A-GG-ACC-GT-GAA---ATTT-CCCG-AACAATTCC-TT-GA---TTTTTTTTTACT-TCA-----A-AA--GTGTTTCCTAT----A-GT-CAACTTC----AGTAAA-TTTTG--------GAATTTTGTGTTCATAAATATT
gi|8 : AATATTAATTTGATTAAATACAAAT-TGAATCG-CAAAGCCATT--aatttgattaaatacaaattgaatcgcaaagccattgaat
gi|9 : ccaagatgatgggataaaatacaacgcagaaatgtgaaaatatttttgcttttattttgcatcagaaatgcgtagcgtccataaagaaagtctttttaaaaaatcatgccttcttccctttggatatttccactttggctccttcaggaccgtgaaatttcccgaacaattccttgatttttttttacttcaaaagtgtttcctatagtcaacttcagtaaattttggaattttgtgttcataTGCTTCTTTACC-TCA-----ACAAAAGCGTTTTCTGA----A-AT-CAGTTTT----AGAAAA-TTGTG--------GAACTGTGCCTTCATAAAAATGTTGAACAGAT-------GGGACAGATTCCCTGACGTTAGATTGATTGTATATAGAC-TGAATCA-TAAAGTCGTCAAT-ATCGATC-TTTGGTA-TGCTCATTCACTTCACATGTGGTGA-GTT-CATTGGAC-ATAAATG-TTG--TTAAACGCGC-TTTCATGTGTTCGTA--CCCgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTAAGGGTGCATCGATTAAGTGACATGAGTTGCATGAAATAACTGGAGTTTAAAAAATCCATTTTTCGACATAGTGTCACAGGGTGTGAATGTGCAAGTTTATT
Unaligned ( gi|18 ): ACTTGGAGGGCATTTGATTAAGCGACACGAGTTTCACGTGTAACTATAATTGTAAATTTAAAAACGTCCAATTTTCGACATTAGTGTC
Unaligned ( gi|21 ): GAGTAACTAGATTTGGAGATAAAACGTTCAATTTTCGACACTAGTGTCGCATGGGTATTACGCAAGG
Unaligned ( gi|22 ): ACTTTTGAGTTACGCGAGTTACAGGAGTTGCAAATAAAA