lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 55 4 44 22 11 4444 2 1 22 1 33 2 1 2 44444444444444444444444 22 1 222 2 1 2 4444 333 1 99999999999999999 2 1 44444 1 222222222 8888888888888888888888888888888888888888888888888888888888888 11 1 333 2 2 2 444 4 4 333 2222 222 1 33 555555 4 1 2 1 2222 2222 2222222 2 444 2 2 666666 2 22 1 2 33 1 555555 22 4444444444444444 2222 2 2 333 2 1 11 11 11111 2222222222 11111 111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11 111111 1 2222 1 222222 11111 1 444444444444444 111111 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333333333333333 1 333 222222222222222222222 1111 11111 11111 66666666666666666666666666666666 22222222222 1111 1111111 55555555555555555 1
lowQualScore : 0 55 0 33 77 88 1111 4 0 5 44 5 00 0 5 0 55555555555555555555555 44 4 5 111 0 5 4 0 2 0000 888 5 22222222222222222 0 5 4 55555 5 888888888 3333333333333333333333333333333333333333333333333333333333333 88 5 3 555 0 0 3 4 333 0 0 555 5555 333 5 00 222222 4 0 5 0 3 5 4444 2222 5555555 0 3 333 4 0 0 666666 0 77 5 0 00 4 5 666666 3 77 4444444444444444 4444 0 2 0 333 2 0 3 99 33 1 22222 0 0000000000 6 8 11111 999999999999 4 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 1 4 11 1 77 555555 1 1 5 0 5 3 6 1111 7 3 333333 7 33333 0 6 3 333333333333333 333333 99 1 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000 000 444444444444444444 5 5 66 6 2 000 777777777777777777777 66 4 3333 11111 4 66 9 4 55555 4 22222222222222222222222222222222 777 1 55 77777777777 4 8888 8 8 66 4 9999 4444444 4 0 77777777777777777 0
lowQualScore : . .. . .. .. .. .... . . . .. . .. . . . ....................... .. . . ... . . . . . .... ... . ................. . . . ..... . ......... ............................................................. .. . . ... . . . . ... . . ... .... ... . .. ...... . . . . . . .... .... ....... . . ... . . . ...... . .. . . .. . . ...... . .. ................ .... . . . ... . . . .. .. . ..... . .......... . . ..... ............ . . ................................................................................................................... . . . .. . .. ...... . . . . . . . .... . . ...... . ..... . . . ............... ...... .. . ... ............................................................................... ... .................. . . .. . . ... ..................... .. . .... ..... . .. . . ..... . ................................ ... . .. ........... . .... . . .. . .... ....... . . ................. .
lowQualScore : 0 00 0 00 55 55 0000 0 0 5 00 5 00 0 5 0 55555555555555555555555 00 0 0 000 0 5 0 0 5 5555 000 5 55555555555555555 0 5 0 55555 5 555555555 0000000000000000000000000000000000000000000000000000000000000 55 5 0 000 0 0 0 0 000 0 0 000 0000 555 5 55 000000 0 0 5 0 0 0 0000 0000 0000000 0 0 000 0 0 0 000000 0 55 5 0 55 0 5 000000 0 55 5555555555555555 0000 0 5 0 555 5 0 3 00 77 7 55555 4 6666666666 4 3 11111 666666666666 0 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 1 4 99 7 77 777777 7 7 7 7 7 3 7 7777 3 3 333333 3 33333 5 7 5 555555555555555 888888 22 7 777 7777777777777777777777777777777777777777777777777777777777777777777777777777777 000 999999999999999999 0 0 99 8 0 999 888888888888888888888 11 4 6666 44444 4 11 4 4 66666 4 11111111111111111111111111111111 888 9 11 22222222222 4 3333 9 9 11 4 4444 4444444 4 3 66666666666666666 1
consensus : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAAATTCCATGGTGTNAACGATTAGNTGCAATTAACNAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTAATCNTCCTAGGATAAACGTTTTGNAAACCACATNAATGTTGATAGGAAAAATATCTGACAACAAACATGANGAATAGTGNAAATGACGCATCACATCCCTGACTGCACAGGCAAAATCATCTGGGAGCGCCNTTACCCATATCTACTCTGANGCNTGGCATGTATGTTAATTTCTCCAACTCCTGACACCGAATACCTAAGAAAAACGNCTTTGGTTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACCCCTACCCTAAGCCNATATTCCCTCTTCAAGGCTGCATNTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATTTATANTNGCAATGCATATGCTCGGAGTATTGGATTNAATT-ACTCATTTAAGANTTTCCACAATACAAAGATTATAAATCAACAGCTGTTCAGTACATCNAGATTTACNATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GC-ATTCATATTAGTCCCACACCTTTACTAGTACATGTACTTAAGAACTTCGNTCCTGTTTCTGATTTAACACCTTTCATCTGACNAGCAGATTAACG-AAATCTAATNATTCGGTTTTTGTCTGTCCAGNTCCCCGTTTGTNGCCATGGATTTAAG-AAAGG-NCATCG-ACACGATTTTGGTAC-----AAAAAT-----TANTTAGATATTT-----AAT-GA-A-CA----AT-ATNAT-A----G---T------A--------TT--CGAT-----TAAAAC-AT-AG-CAACAA-ACCTGAA-TTT----C--A--NAA---TGA---T-GCAAAGAT-------T-----T-ATTTGAGACATCTAAAC-TTTTC--ATTTTCAAAAC-AAGG-CACGAGCCCTG-TTTATGTTT-C-AAGTTTTCC--G-TTTTTTTCT-TCTT-G-CG-CTTAAATTCCCT---A-AATTG-ATTTATC-ATT-CA-----ATAACGT-G-TGTTG--AAATGTTN--AACGCT--T--TGA-CATA--C-TTTTTAAA-----CGGCC-T---G-GT-------AGTCTTACCTC-CAATAA----------GA---CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATTTTATGTAAATACAAA----GTATG-TCCCAGAA---G--TA-AAAATT-ATT----TTC-AA--TCCA-C-----TTG-TTC---------------A-C---GA--GA-T--TTTT---ATTTCTA-TA-----------AC-AA----AA-AATT-GT--C-AATTT----C-------AA-TCG------------G-T--CCATGCCCCTTTAGA
Reference ( gi|2 ) : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACAGTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC--TTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAACG--GCATCACATCC-TGACTGCACAGGCAAA--TA-CTG---ACA--GTTACCTAT-TCTACTCTAATACA----ATGTATGTTA-TT-CTC--ACTTCTG----C--ATACC-A-GA-----GCCTT-GGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCCAAT---CC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTATATTAGCAATGCATATGCT---A-CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTA-AA-TCAA-AGCTGTTCAGT-CATCAAGAT--ACTATCTCAAAATTAAAGTA-GCTAACTT-GCACAGCAATTCATATTAGTCC-ACAC--TTACTAGTACATGTAC-TAAGAACTTCATTCCTGTTTCTGATTTAACACCTTTC---TGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGT-CAAGT-TCCGTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGATAC-----AAAAAT-----TAAGTAGATTTTT-----AAT-GA-A-CA----AT-ATCAT-A----G---T------A--------TT--C--------TAAAAC-AT-GG-CAACAA-ACCTGTA-TTT----C--A-TTAA---TGA---T-GCAAAGAC-------T-----T-ATTTGAGACATTTAAAC-TTTTC--ATTTAAAAAAC-ACGA-CACAAGCTCTG-TTTATGTTT-C-AAGTTTTCT--G-TTTTTTTCT-TCTTTG-CA-CTTAAATTCCCT---A-AACTG-ATTTATCGATT-CA-----ATAACAT-G-TATTG--AAATGTTC--AACGCT--T--TGA-CATA--C-TTTTTAAA-----CAGCT-T---G-GT-------AGTCTTACCTC-CAATAA----------GA---CAAAC--------AC-ACA----T-TT-GG--GAGCCAGATCTTGTGTATCCACAAA----ATATG-TCCCAGAA---G--TA-AAAATT-ATT----TTC-AA--TGCA-C-----TTG-TTC---------------A-C---GA--GA-T--TTTT---ATTTCTA-CA-----------AC-AA----AA-AATT-GT--C-AATTT----C-------AA-TTG------------G-T--CCATCCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAAC-AT-AGT-GCAATTAACAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAATG--GCATCACATCCCTGACTGCACAGGCAAAA-TATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATT-CTTCAACTCCTGACACCGAATACC-AAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCC-TCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAATTGCA-TGC-TATGCTCGGA-TATTGGATTTAATT-ACTCATTTAA-AGTTTC-ACAATACA--GATTA-AAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAGA-CTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAAT-TA-TT-TTC-GTTT--GTCTGT-CAGTT-CCCGT--GTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGATAC-----AAAAAT-----TAAGT-GATTCTTTACCCAATTGA-A-CA-----T-ATCAT-G----A---T------A--------TTTTC--------TAAATC-ATAGG-CA-CAA-ACCTGTA-TTT----CCCA-TTA----TGA---TTGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAAC-TTTTTCAATTTAAAAAAC---TA-CACA-GCTCTG-TTCTGGTTT-CCAAGTTTTCTCAG-TTTTTTTTT-TCTT-G-CA-CTTAAATTCC-T---A-AA-TG-ATTTATCG--T-CA-----A--ACAT-GCTATTG--AAATGT-C--AACGCTC-T--TGA---TA--C-TTTTTAAA-------GCT-TT--G-GT-------AGATCTACCTC-CAATAA----------GA---CAAAC--------AC-ACA----TATT-GGGTGAGCCAGCTCTTGTGTATC--CAAA----ATATG-TCCCAGAA---GGTTA-AAAATT--TT----TTC--A--TGCA-C-----TTG-TTC---------------A-CA--GA--GA----TTTT---ATTTC-A-CA-----------AC-AA----AATAATT-GT--CAAATTT----C-------AA-TTG------------GTT--CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CAGTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C--TTT-TAAACCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAA-GACGCATCACATCC---AC-GCACAGGCAAAATCA-CTG---GGG--TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTA-TTTCTC--ACTTCTG----C--ATACCTA-GA-----AGCTT-GGTTTA--C-----------CCCT-----TG--TTACCCCTACCC-AAGCCAAT---CCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT--TTATAT-AGCAATG-ATATGCT---AGTATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAA-TCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GC-ATTCATATTAGTCC-ACAC--TTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTTTC----GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCATG-ATTTAAGAAAAGGCCCATC--ACATGATTTTGATAC------AAAAT-----TAAGT-GATTTTT-----AAT-GA-A-CA----ATAATCA--A----G---T------A--------TTA-C--------TAAAACTAT-GG-CAACAATACCTGTCTTTT----C--A-TTAA---TGA---T--CAAAGAC-------T-----T-ATTTGAGACATTTAAAC-TTTTC--A-TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-C-AA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATTCCA-----ATAACAT-G-TA-TGATAAGTGTTC---CCGCT--T--TGACCATAAGCGTTTTTAAA-----C-GC------G-GT-------AGTC-TACCTC---ACTA----------GA---CAAAC--------AC-AC-----T-TT-GG--GAGCCAGAT-TTGTGTAT-CACAAAT---ATATG-T-CCAGAA---G--TA-AAAATA-ATT----TTC-AA--TGCA-C-----TTGTTTC---------------ACC---GA--GA-T--TTTTCTAATTTCTATCA-----------AC-AAG---AA-AATT-GTCCC-AATTC----C-------AAGTTG------------G-CTGCCAATCCCCTTTAGAtc
gi|5 : caag-AAAGGAGCATGG-GCACAATTTTAGTAC-----AATAAA-----TAA-TA---TTTT-----ATT-TA-AGTA----AT-GTTATCA----C---C------A--------TG------------GAAAC-AT-AG-CAACAA-ATCT----------------------------------AA------------------ATTTGAGACATTTAAAC-TTTTC--ATTTTCAAAAC-AAGG-CAAGAGCCCCA-TTTATGTTT-tca
gi|15 : tA-AGACGACTTTTGTAC-----AAAAAT------ATTTTGATATTC-----ATT-GA----------T-ATAAT-A----G---T------A--------TT--TAATTCATGTAAAAC-AC-AG-CTTCAA-TCCTGAA-TTT----TAAA-ACAA---TGA---C-ACAAAGATA------TACATAT-ATTTAAAACATTCAAACGTTTTC--Aacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|8 : gaaggaactag-ACATGATTTGGGTGC-----AA---------TAA-TAGACATTT-----AATTGATA-CATGTAAT-ATGAT-A----GACGT------A--------TT--TGATTTGTGTGCAAT-GT-AGTCAACAA-AATT-TA-TCT----A--AATTTA---TGAAACT-GCAAAGAT-------A-----T-ATTTGAGAAATCAAAAC-TTTGC--AATTTTAAAAC-AAGG-CACGAGCCCTG-TTTATTTTT-cacgaaccctgataatgttgtatgtcacgt
gi|6 : aatgggagtgg-ACACGATTTGGGTACCCCCCAAAAATACCAGTATTTAGATATTT-----AAT-TG-A-TA----AT-ATGAT-A----G---T------A--------CT--TGATTTGTTTAAATC-GT-AG-CAA-AA-ACCCAAA-TTT----C--A-AAAAC--TGA---T-TCAAAGATGTAAAATT-----TGATTTGAGGCA-TCAAAT-CTTTCA-ATTTTCATAAC-AAGG-CATGAACCCTG-TGTATGTTT-acacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
gi|18 : gcaggCATGATTTTGGTAC-----AAAAAC-----TATCTAAATATTT-----AAT-TC-A-TG----AT-ATGAT-GAATTG---TTATTTAA--------TT--CGCA-----GAAAGC-A---A-CACCAA-ATCAAAA-TTCAAAAC--A--AAA---TGA---T-ACAAAAATA------TA----T-ATTTGAGACGTCTAAGC-Ttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|4 : -----AAAAAC-----TATTCAGATATTT-----CAT-TA-G-TA----AT-ATAAT-ACTA-G---T------AATTGATCCTT--G--------TAAAAA-AT-AT-CAGCAA-ACCTAAA-TTT----C--A---AAAGCCGG---C-GCACAGAT-------G-----T-ATTTGAAACATCTAAAG-TTTTC--ATTTTCACTAC-ACGT-CAGGAACCCTG-TTTATGTTTAC-ATGTT
gi|7 : tggttaaaTGGATATTC-----AAT-GA-A-AA----AC-AGTAA-A----G---T------A--------TT--TGATCGTG-TAAAAC-AT-GG-CAGCAA-AC-------TT----C--A---A--------------AAAG---------------T-ACTTAA---ATCTA------TTC--ATTTCCAAAAT-TAGA-CTCGAGATTTG-TTTATGTTT-acgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|17 : gtT-GA-A-AAC---AT-GTCATTC----G---T------G--------TT-------------AAGC-AT-AG-CAACAA-ATCTAAA-TTT----C--A-AAAAC--TGA---T-GCAAAGAacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTG-TG-TTTG--CTCCCT---A-AATTG-ATT-----GTT-TA-----TTACCGC-A-TGTCA--AAATGTTG--AATTCT--T--C-A-TAGA--A-ATCTTGAAGTTCTCATCT-CTTCGCGT-------GGTTT--CCTGGCAATGACAGATGTGTTAA---TAAAC--------AC--TA----T-TCCGG--GAACCGAGTTTTATGTAAATATAAA----CCAT--TCT---GT---G--TA-AAAAT--ATT----TTC-AA--T-CA-CC----TTA-TTC---------------A-T---AAAAGA-T--CTTT---ATTTCTA-TA-----------ACCAA----AATAATTTGT--C-AATTT----C-------AA-TCGACGAGAAATTGTG-T--TCACGCCCCTTTAtgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatATTCCCCCCAA-AATTG-ATCTATC-ATT----------AACGT-A-TGTTG--AAATGTTG--AATGCT--T--T-A-GAAA--C-TTC----------CA--C-T---G-TT-------GGTTTCACAGC-TAATAT----------GA---CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAATTTATGTAAATACAAA----GT--------AGAATCTG--TATAAAAAT-ATT----TTT-AA--TCCA-T-----TTA-CT----------------A-CTAAAA--GA-T--CTTT---ATTTCTA-TATCTATTTCTATAT-AAAAACAA-AACTGGT--C-AATTT----C-------AA-TCAATCAAAAACCACG-T--CCATGCCCCTTTAtgtgtttaaaaatacaccagcaagttattgtttgtta
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcTCTCT---A-AATTG-ATTAATC-ATT-GATGCTTGTGACGTAG-CTTTG--GA-TGTTCTCACCGCTGCT--TG----------TTTTTAAA-----TGGCCAT---G-AC-------AAGCGTGCT--------------------A---CAAAC--------ATTATT----T-TT-GG--GAGCTGTAT-TTATGTAAACACACA----GTATA-TCCTGT-----G--TA-AACAGT-ATA----TGT-AA--TCCA-C-----TTA-TT-----------------------------------T---ATATCTA-TA-----------CC-AAG---AA-AACT-AT--C-AGTTT----CTATCAAAAA-TCGT-----------G-T--TCATGCCCCTTTAatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|10 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcCCCT---C-AAGTG-ATTTGCC--TT-TA-----ATCA-AT-G-T--TA--AAACATTG--AATGTT--TCTTGG-CATA--A-TCTTGGAA-----TGAAA-T---GTGTGCAACAAAG-CTTAT-TC-TAGCAT----------GATTACAAAT--------AC-AAT----T-TT-GG--GA-TTAAGTTTAATGTAAATATAAA----GCATA-TCCT-GTA---T--TG-AAA--T-ATT----TTCAAA--TCCA-C-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATT--TTTT---TTTTCTA-TG-----------AC-AA----AG-ACAG-GT--G-AATTTCAAAC-------AA-ATGAA----------A-A--CCATGCCCCTTTAagtttattaacaagtgttaatattgctgcttt
gi|7 : ----------GA---CAAAC--------AA-ACACGATT-TT-GG--AAGACAAATTTTATGTA
gi|11 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgtt-TT-GG--GAGCCTGAT--TATGTAAATACAGAGTATATATA-TCCT-GAC---G--TA-AA---T-AT---------AA--TCCA-C-----TTA-TTT---------------T-T---GAAAGA-T--TGTG---ATTTTTG-TA-----------AC-AA----AA-AATT-GT--C-AATTT----C-------AA-TGT------------G-T--CCATGTCCCTTTAaattgtgtataattatcctcattgac
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgataAA----ACATGATTTCAGGA---G--CC-AAAGTTTATGAAAATAC-AAAGTGCATC-----TTG---C---------------G-T---GA--AA-TATCTTT---GATTC-A-CATT---------AC-AA----AA-AATT-AT--C-AATTT----C-------AA-TTG------------A-T--atcatacaggctaatgcatt
gi|9 : tttatatgaattttcaatactggctatgacaagtgtgttggc---G--TA-AAAGT--ATT----TTC-AA--TCCA-CATATTTTG-TAA---------------A-C--------A-T--TTTT---ATTTCTA-TA-----------CC-AA----AA-AACT-GT--C-ATTTT----C-------AA-TCG------------A-T--Caagaaattgtgtccacgcccttttggcctttaatggagacgggcatagatatttttattgca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2 22 333 222 11 22 1 2 2 11 2 2 22 2 22 3333 2 33333 555555 2 44444 2 33 333333333333333333333333333333333333333333333333 2222222 333 2 1 33 1 333 22 1 11 44444 1 2 2 2 2 222 11 11 1 22 33 11 333 333 22 11 2 11 3333 11 11111 11111 11111 11111111111 111111111 5555555555555555 4444444444444444444444444444444444444444444444 1 111 1 2222222 1 11111 333333333333333333333 1111111111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33333333333333333 3333333333333 11 11111 666666666666666666666666666666 11111111111 1111 1111111 88888888888888888888888888
lowQualScore : 5 88 0 00 111 7 000 1 99 11 7 4 3 7 3 7 44 1 6 3 7 3 99 1 6 6 3 7 11 44 1 2222 3 7 33333 888888 0 3 88 11 44444 7 3 7 00 0 111111111111111111111111111111111111111111111111 7777777 7 7 1 777 6 3 2 1 00 3 7 777 22 4 1 7 44 77777 1 3 7 3 1 6 7 7 3 7 3 6 6 3 1 999 1 33 33 3 00 6 6 00 7 44 7 6 11 7 777 7 1 111 00 99 88 0 3 7 6 1 888 7 6 1 0 33 4444 00 66 11111 4 77777 44 9 00000 4 66666666666 4 1 999999999 1111111111111111 0 3 3 3 99999 444 4444444444444444444444444444444444444444444444 4 1 66 4 11 2 999999 4 0 2 555 0 0 8 8 1111111 0 00000 3 5 888 777777777777777777777 0 8888888888888888 66 777 2 5 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555 3 7 55 2 3 3 4 3 4 5 2222222222222 55 4 22 4 00000 000000000000000000000000000000 4 777 4 99999999999 4 6666 8 4 4 55 4 3333333 4 4 99999999999999999999999999
lowQualScore : . .. . .. ... . ... . .. .. . . . . . . .. . . . . . .. . . . . . .. .. . .... . . ..... ...... . . .. .. ..... . . . .. . ................................................ ....... . . . ... . . . . .. . . ... .. . . . .. ..... . . . . . . . . . . . . . . . ... . .. .. . .. . . .. . .. . . .. . ... . . ... .. .. .. . . . . . ... . . . . .. .... .. .. ..... . ..... .. . ..... . ........... . . ......... ................ . . . . ..... ... .............................................. . . .. . .. . ...... . . . ... . . . . ....... . ..... . . ... ..................... . ................ .. ... . . ..................................................................................................... ................. . . .. . . . . . . . ............. .. . .. . ..... .............................. . ... . ........... . .... . . . .. . ....... . . ..........................
lowQualScore : 5 55 0 77 333 3 777 0 33 33 3 0 7 3 7 3 77 0 7 3 3 3 00 0 7 7 7 3 77 33 0 7777 3 3 00000 000000 7 7 00 77 77777 3 7 3 33 7 777777777777777777777777777777777777777777777777 3333333 3 3 0 777 7 7 0 0 33 3 3 000 77 0 0 3 00 77777 0 3 3 3 0 7 3 3 7 3 3 7 7 7 0 777 0 33 33 3 77 7 7 33 3 77 3 7 77 3 333 3 0 333 77 33 33 7 3 3 7 0 777 3 7 0 7 33 8888 33 11 11111 4 22222 77 8 00000 0 33333333333 0 0 777777777 2222222222222222 2 6 6 6 11111 777 1111111111111111111111111111111111111111111111 0 6 11 4 44 0 222222 4 0 5 888 0 8 0 0 0000000 6 88888 9 0 888 999999999999999999999 2 5555555555555555 99 999 2 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55555555555555555 6 3 00 5 6 6 4 6 0 5 2222222222222 55 0 88 0 00000 888888888888888888888888888888 0 000 0 00000000000 0 5555 0 0 0 55 0 0000000 0 0 77777777777777777777777777
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAAC-AGTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAACG--GCATCACATCC-TGACTGCACAGGCAAAATCA-CTGGGAG-----TTACCTAT-TCTACTCTAATACA----ATGTATGTTA-TTTCTC--ACTTCTG----C--ATACC-AAGAA-----GCTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCCAAT---CCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTA-TTATA-TAGCAATGCATATGCT---AGTATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTA-AAATCAA-AGCTGTTCAGT-CATCAAGAT--ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACAC--TTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTTTC---TGACAAGCAA--TAACG-AAATCTAATTATTCG-TTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAGAAAGG--CGCATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTG-AT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-T-CTTTG--CG-CTTAAATTCCCT---A-AATTG-ATT---TAT-----C-AT-T-CA-----ATAACGT-G-TG-----TT----G--AAATGTTN--AACGC-T--T--TGA-CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAACA--------C-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT---CCCAGAA---G--TA-AAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAAATTCCATGGTGTNAACGATTAGNTGCAATTAACNAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTAATCNTCCTAGGATAAACGTTTTGNAAACCACATNAATGTTGATAGGAAAAATATCTGACAACAAACATGANGAATAGTGNAAATGACGCATCACATCCCTGACTGCACAGGCAAAATCATCTGGGAGCGCCNTTACCCATATCTACTCTGANGCNTGGCATGTATGTTAATTTCTCCAACTCCTGACACCGAATACCTAAGAAAAACGNCTTTGGTTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACCCCTACCCTAAGCCNATATTCCCTCTTCAAGGCTGCATNTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATTTATANTNGCAATGCATATGCTCGGAGTATTGGATTNAATT-ACTCATTTAAGANTTTCCACAATACAAAGATTATAAATCAACAGCTGTTCAGTACATCNAGATTTACNATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACACCTTTACTAGTACATGTACTTAAGAACTTCGNTCCTGTTTCTGATTTAACACCTTTCATCTGACNAGCAGATTAACG-AAATCTAATNATTCGGTTTTTGTCTGTCCAGNTCCCCGTTTGTNGCCATGGATTTAAGAAAGG--N-CATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TANTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTCG-AT-----T-----AAAAC-ATAG-CAACAA-A-----CCTG-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCC--G-TTTTTTTCT-T-CTT-G--CG-CTTAAATTCCCT---A-AATTG-ATT---TAT-----C-AT-T-CA-----ATAACGT-G-TG-----TT----G--AAATGTTN--AACGC-T--T--TGA-CATA--C--TTTTTAAACGGC-C-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAACA--------C-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATGT---CCCAGAA---G--TA-AAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAACAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAATG--GCATCACATCCCTGACTGCACAGGCAAAAT-ATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATT-CTTCAACTCCTGACACCGAATACC-AAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCC-TCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTA-TTATAATTGC-ATGC-TATGCTCGGA-TATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTA-AAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTCG---TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAGAAAGG--A-CATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGT-GATTCTTTACCCAATT-GA-AC-----AT-ATCATG---A-----TATTTT--C-----T-----AAATC-ATAG-GCACAA-A-----CCTG-TATTT----C---C-C-ATTA--TGAT--TGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAACTTTTTCAA-TTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-T-CTT-G--CA-CTTAAATT-CCT---A-AA-TG-ATT---TAT-----C-G--T-CA-------AACAT-GCTA-----TT----G--AAATG-TC--AACGC-TC-T--TG---ATA--C--TTTTTAAA--GCTT-TG-GT-------AGATCTACCTC--CA----AT---------------AA----------GA------CAAACA--------C-ACA----TATT-GGGTGAGCCAGCTC-TTG-TGT--AT-CCAAA-ATATGT---CCCAGAA---GGTTA-AAAATT-TTTTC--ATGCAC-----TTG-TTC---------------A-CA--GA--GA--TTTT---ATTTC-AC-A-----------A-CAA----AATAA-TT-GT--CAAATTTC-------AA-TT-G------------GTT-----------CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATT---TGC-----C--T-T-TA-----ATCA----A-TG-----TT----A--AAACATTG--AATGT-T--TCTTGG-CATA--A--TCTTGGAATGAA-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------AT----------GATTA---CAAATA--------C-AAT----T-TT-GG--GA-TTAAGTT-TAA-TGTAAAT-ATAAA-GCATAT---CCT-GTA---T--TG-AAA--TATTTTCAAATCCAC-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATTTTTT---TTTTCTAT-G-----------A-CAA----AG-AC-AG-GT--G-AATTTC-------AA-ACAA------------A-TGAAAA------CCATGCCCCTTTAtc
gi|11 : -TT-GG--GAGCCTGATT---A-TGTAAAT-ACAGA-GTATATATATCCTGAC---G--TA-AA---TAT-----AATCCAC-----TTA-TTT---------------T-T---GAAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TG-T------------G-T-----------CCATGTCCCTTTA
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgata----------GG------CAAACA--------T-G-A----T-TTCAG--GAGCCAAAGT-TTA-TGAAAAT-ACAAA-GTGCAT---CTT--GC---G--TG-AAA--TATCTTT-GATTCAC--------------------------------------A-TT---------------------------A-CAA----AA-AA-TT-AT--C-AATTTC-------AA-TT-GATAAGAAATTGTG-T-----------CCACGCCCTTTTGGatcatacaggctaatgcatt
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAA------TATTTTGATATTC-----AT-T-G---------AT-ATAATA---G-----TATTTA-ATTCATGT-----AAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----TAAAA-C-A--A--TGA---CACAAAGATA------TACATAT-ATTTAAAACATTCAAA-----C--G-TTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagATTCGTGT-----T-----AAG-C-ATAG-CAACAA-A-----TCTA-AATTT----C---A-A-A--AACTGA---TGCAAAGAT-------gtatgtcacgt
gi|18 : tgaaaacatgtcCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTT-----AA-T-TC-ATG----AT-ATGATG---AATTGTTATTTA-AT-----TCGC--AGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAAC---A-A-A--A--TGA---TACAAAAATA------TA----T-ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|2 : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACAGTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC--TTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAACG--GCATCACATCC-TGACTGCACAGGCAAA--TA-CTGACAG-----TTACCTAT-TCTACTCTAATACA----ATGTATGTTA--TTCTC--ACTTCTG----C--ATACC--AGA------GCCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCCAAT----CCTCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTATATTAGCAATGCATATGCT----ACATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTA--AATCAA-AGCTGTTCAGT-CATCAAGAT--ACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACAC--TTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTTTC---TGACAAGCAA--TAACGTAAAT-TAATTATTTG-TTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAGAAAGG--CACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTT-----AA-T-GA-ACA----AT-ATCATA---G-----TATTC---------T-----AAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C---A-TTA--A--TGA---TGCAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A-TTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-T-CTTTG--CA-CTTAAATTCCCT---A-AACTG-ATT---TAT-----CGAT-T-CA-----ATAACAT-G-TA-----TT----G--AAATGTTC--AACGC-T--T--TGA-CATA--C--TTTTTAAACAGC-T-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAACA--------C-ACA----T-TT-GG--GAGCCAGATC-TTG-TGTATCC-ACAAA-ATATGT---CCCAGAA---G--TA-AAAATTATTTTC-AATGCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TT-G------------G-T-----------CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAAC-AGTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT--AAACCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAA-GACGCATCACATCC---AC-GCACAGGCAAAATCA-CTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTA-TTTCTC--ACTTCTG----C--ATACCTA-GAA-----GCTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCCAAT---CCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT--TTATA-TAGCAATG-ATATGCT---AGTATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAA-TCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACAC--TTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTTTC----GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCC-CATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTT-----AA-T-GA-ACA----ATAATCA-A---G-----TATT---AC-----T-----AAAACTATGG-CAACAATA-----CCTGTCTTTT----C---ATT-A--A--TGA---T-CAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A--TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGT-CTT-GGCCACCTTAAATTCCCT---ATAACTGAATT---TAT-----CGAT-TCCA-----ATAACAT-G-TA------T----GATAAGTGTTC---CCGC-T--T--TGACCATAAGCG-TTTTTAAACG-----CG-GT-------AGTC-TACCTC--------AC---------------TA----------GA------CAAACA--------C-AC-----T-TT-GG--GAGCCAGA-T-TTG-TGT--ATCACAAATATATGT----CCAGAA---G--TA-AAAATAATTTTC-AATGCAC-----TTGTTTC---------------ACC---GA--GA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-AA-TT-GTCCC-AATTCC-------AAGTT-G------------G-CTG---------CCAATCCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTT-----CA-T-TA-GTA----AT-ATAATACTAG-----TAATTG-ATCCTTGT-----AAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C---A-A-A--AGCCGG---CGCACAGAT-------G-----T-ATTTGAAACATCTAAAGTTTTC--A-TTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-T-CTTTG--TG-TTTG--CTCCCT---A-AATTG-ATTGTTTATTACCGC-ATGT-CA-----A-AATGT---TGAATTCTTCATAG--AAATCTTG--AA-GT-T--C--T---CAT---C--TCTTC-----GC-G-TG-GT-----------TT-CCTGG-CA----AT---------------GACAGATGTGTTAA------TAAACA--------C--TA----T-TCCGG--GAACCGAGTT-TTA-TGTAAAT-ATAAA-CCAT-T---CT---GT---G--TA-AAAA-TATTTTC-AATCACC-----TTA-TTC---------------A-TAA-AA--GA-TCTTT---ATTTCTAT-A-----------ACCAA----AATAATTT-GT--C-AATTTC-------AA-TC-GACGAGAAATTGTG-T-----------TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatAAAGG--AGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTT-----AA------GTA----AT-GTTAT----------CA--CC-AT-----G-----GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--A-TTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATC---TAT-----C-AT-T----------AACGT-A-TG-----TT----G--AAATGTTG--AATGC-T--T--T-A-GAAA--C--TTC-----CA---C-TG-TT-------GGTTTCACAGC--TA----AT---------------AT----------GA------CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAAT-TTA-TGTAAAT-ACAAA-GT----------AGAATCTG--TATAAAAATATTTTT-AATCCAT-----TTA-CT----------------A-CTAAAA--GA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-AA-CTGGT--C-AATTTC-------AA-TC-AATCAAAAACCACG-T-----------CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTT-----AA-T-TG-ATA----AT-ATGATA---G-----TACTTG-AT-----TTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C---A-A-A--AACTGA---TTCAAAGATGTAAAATT-----TGATTTGAGGCATC-AAATCTTTC--AATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATT---AAT-----C-AT-T-GATGCTTGTGACGTAG-CT-----TT----G--GA-TGTTCTCACCGC-TGCT--TG-----------TTTTTAAATGGC-CATG-AC-------AAGCGTGCT----------------------------------------A------CAAACA--------TTATT----T-TT-GG--GAGCTGTATT-T-A-TGTAAAC-ACACA-GTATAT---CCTGT-----G--TA-AACAGTATATGT-AATCCAC-----TTA----------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-AA-CT-AT--C-AGTTTCTATCAAAAA-TC-GT-----------G-T-----------TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTC-----AA-T-GA-AAA----AC-AGTAAA---G-----TATTTG-ATCGTG-T-----AAAAC-ATGG-CAGCAA-A-----C-------TT----C---A-A----------------AAAG---------------T-ACTTAA---ATCTA-----TTC--A-TTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gTTCTTTCT-TATTT-G--TG-CTTG--CTGTCT---C-AATTG-ATT---CAC-----C-AT-----------TAATGT-T-TG-----TC----G--ATATATTG--AATGCTT--T--TGA-AATA--CAATTTGGAAAT--C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAA----------GATGTTGACAAACA--------A-ACACGATT-TT-GG--AAGACAAATT-TTA-TGTAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTT-----AA-TTGATACATGTAAT-ATGATA---GACG--TATTTG-AT-----TTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT---------------A--TGAAACTGCAAAGAT-------A-----T-ATTTGAGAAATCAAAACTTTGC--A-ATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAACA--------T-G-A----T-TT-TG--AAGCCGGATTATTAATAT---T-ACA---GTTTAT---CCTTT-----G--TA-AAAGT-ATTTTC-AATCCACATATTTTG-TAA---------------A-C--------A-TTTTT---ATTTCTAT-A-----------C-CAA----AA-AA-CT-GT--C-ATTTTC-------AA-TC-G------------A-TCAGAAATCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 11 111 11 11 1 1 1 1 11 22 1 22 1 1 11 22 111 33333 1 2222 11 3333333 33333 77777777777777 333 111 1 1 222 1 222 1 1 1 11 222 1 1 1 1 222 11 11 1 22 11 11 222 11 22 11 11 11 1 11 11 11111 11111 11111 11111111111 111111111 555555555555555 4444444444444444444444444444444444444444444444 1 11 1 111 1 11111 3333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222 111 33333333 11 11111 666666666666666666666666666666 11111111111 1111 1111111 88888888888888888888888888
lowQualScore : 5 88 5 00 88 7 999 99 44 7 3 3 3 7 3 7 44 6 00 7 3 00 7 6 6 3 7 3 88 6 00 7 000 33333 3 7 8888 7 7 88 6666666 6 33333 7 11111111111111 888 3 7 7 777 6 3 2 555 3 7 333 7 3 3 3 7 44 555 3 7 3 6 7 7 7 3 6 6 3 555 33 33 3 00 6 6 88 7 44 7 6 0 7 333 7 7 88 00 99 7 44 7 7 6 888 7 6 33 0 33 00 66 11111 4 77777 44 9 00000 4 66666666666 4 1 999999999 111111111111111 55 3 3 99999 33 4444444444444444444444444444444444444444444444 4 1 66 4 11 2 999999 4 0 3 11 8 0 8 0 222 0 00000 3 5 2 4444444444444 999 66 777 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 666666666666666666 3 7 55 2 3 3 4 3 0 111 11111111 55 4 00000 000000000000000000000000000000 4 777 4 99999999999 4 6666 8 4 4 55 4 3333333 4 4 99999999999999999999999999
lowQualScore : . .. . .. .. . ... .. .. . . . . . . . .. . .. . . .. . . . . . . .. . .. . ... ..... . . .... . . .. ....... . ..... . .............. ... . . . ... . . . ... . . ... . . . . . .. ... . . . . . . . . . . . ... .. .. . .. . . .. . .. . . . . ... . . .. .. .. . .. . . . ... . . .. . .. .. .. ..... . ..... .. . ..... . ........... . . ......... ............... .. . . ..... .. .............................................. . . .. . .. . ...... . . . .. . . . . ... . ..... . . . ............. ... .. ... . ................................................................................................................... .................. . . .. . . . . . . ... ........ .. . ..... .............................. . ... . ........... . .... . . . .. . ....... . . ..........................
lowQualScore : 5 55 5 77 33 3 000 33 77 3 3 3 3 3 3 3 77 7 77 3 3 77 3 7 7 3 3 3 33 7 77 3 000 33333 3 3 3333 3 3 33 7777777 7 33333 3 77777777777777 333 7 3 3 777 7 3 0 777 3 3 333 3 3 3 3 3 00 000 3 3 3 7 3 3 3 3 7 7 3 777 33 33 3 77 7 7 33 3 77 3 7 7 3 333 3 3 33 77 33 3 00 3 3 7 777 3 7 33 0 00 33 11 11111 4 22222 44 8 00000 0 33333333333 0 0 777777777 666666666666666 33 6 6 11111 77 1111111111111111111111111111111111111111111111 0 6 11 4 44 0 222222 4 0 2 00 0 6 0 8 444 6 88888 9 0 2 4444444444444 111 99 999 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555555555555 6 3 00 5 6 6 4 6 7 000 99999999 11 0 00000 888888888888888888888888888888 0 000 0 00000000000 0 5555 0 0 0 55 0 0000000 0 0 77777777777777777777777777
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATC-GTT-CA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAAGTATAT---CCCGGAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATCACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCGCATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATC-ATT-CA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAAGTATAT---CCCAGAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAA-CAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAA--TGGCATCACATCCCTGACTGCACAGGCAAAATATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATTCTTCAACTCCTGACACCGAATACCAAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCCTCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAAT-TGC-ATGC-TATGCTCGGATATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTAAAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTC-G--TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGT-GATTCTTTACCCAATT-GA-AC-----AT-ATCATG---A-----TATTTT-C-----T-----AAATC-ATAG-GCACAA-A-----CCTG-TATTT----C---C-C-ATTA--TGAT--TGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAACTTTTTCAA-TTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-TC-TTGC--ACTTAAATT-CCT---A-AA-TG-ATTTATC-G-T-CA-------AACAT-GCTATTG--AAATG-TC--AACGC-TC----------T--TG--------ATA--C--TTTTTAAA--GCTT-TG-GT-------AGATCTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----TATT-GGGTGAGCCAGCTC-TTG-TGT--AT-CCAAAATATGT---CCCAGAAGGTTAAAAATT-TTTTC--ATGCAC-----TTG-TTC---------------A-CA--GA--GA--TTTT---ATTTC-AC-A-----------A-CAA----AATAA-TT-GT--CAAATTTC-------AA-TT-G------------GTT-----------CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATTTGCC--TT-TA-----ATCA----A-TGTTA--AAACATTG--AATGT-T-----------TCTTGG------CATA--A--TCTTGGAATGAA-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------AT----------GATTA---CAAAT--------AC-AAT----T-TT-GG--GA-TTAAGTT-TAA-TGTAAAT-ATAAAGCATAT---CCT-GTAT--TGAAA--TATTTTCAAATCCAC-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATTTTTT---TTTTCTAT-G-----------A-CAA----AG-AC-AG-GT--G-AATTTC-------AA-ACAA------------A-TGAAAA------CCATGCCCCTTTAtc
gi|11 : -TT-GG--GAGCCTGATT---A-TGTAAAT-ACAGAGTATATATATCCTGACG--TAAA---TAT-----AATCCAC-----TTA-TTT---------------T-T---GAAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TG-T------------G-T-----------CCATGTCCCTTTA
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgata----------GG------CAAAC--------AT-G-A----T-TTCAG--GAGCCAAAGT-TTA-TGAAAAT-ACAAAGTGCAT---CTT--GCG--TGAAA--TATCTTT-GATTCAC--------------------------------------A-TT---------------------------A-CAA----AA-AA-TT-AT--C-AATTTC-------AA-TT-GATAAGAAATTGTG-T-----------CCACGCCCTTTTGGatcatacaggctaatgcatt
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAA------TATTTTGATATTC-----AT-T-G---------AT-ATAATA---G-----TATTTAATTCATGT-----AAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----TAAAA-C-A--A--TGA---CACAAAGATA------TACATAT-ATTTAAAACATTCAAA-----C--G-TTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagAAGC-ATAG-CAACAA-A-----TCTA-AATTT----C---A-A-A--AACTGA---TGCAAAGAT-------gtatgtcacgt
gi|18 : tgaaaacatgtcattcgtgttCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTT-----AA-T-TC-ATG----AT-ATGATG---AATTGTTATTTAAT-----TCGC--AGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAAC---A-A-A--A--TGA---TACAAAAATA------TA----T-ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|2 : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC-TTT--AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAA--TACTGACA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATT-CTC--ACTTCTG----C--ATACCAG--AG-----CCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCC-A-ATCC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTAT-ATTAGCAATGCATATGCTA---CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTAAA-TCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACA--CTTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTT-----AA-T-GA-ACA----AT-ATCATA---G-----TATTC--------T-----AAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C---A-TTA--A--TGA---TGCAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A-TTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--ACTTAAATTCCCT---A-AACTG-ATTTATCGATT-CA-----ATAACAT-G-TATTG--AAATGTTC--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACAGC-T-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCAGATC-TTG-TGTATCC-ACAAAATATGT---CCCAGAAG--TAAAAATTATTTTC-AATGCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TT-G------------G-T-----------CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CA-GTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT-AAA-CCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAAGACG-CATCACATCC---AC-GCACAGGCAAAATCACTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTATTTCTC--ACTTCTG----C--ATACCTAGAAG-----CTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCC-A-ATCCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT-TT-AT-AT-AGCAATG-ATATGCTAG--TATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAATCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACA--CTTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTT---TC-GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCCCATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTT-----AA-T-GA-ACA----ATAATCA-A---G-----TATT--AC-----T-----AAAACTATGG-CAACAATA-----CCTGTCTTTT----C---ATT-A--A--TGA---T-CAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A--TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATTCCA-----ATAACAT-G-TA-TGATAAGTGTTC---CCGC-T-----------T--TGAC-----CATAAGCG-TTTTTAAACG-----CG-GT-------AGTC-TACCTC--------AC---------------TA----------GA------CAAAC--------AC-AC-----T-TT-GG--GAGCCAGA-T-TTG-TGT--ATCACAAA-TATATG--TCCAGAAG--TAAAAATAATTTTC-AATGCAC-----TTGTTTC---------------ACC---GA--GA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-AA-TT-GTCCC-AATTCC-------AAGTT-G------------G-CTG---------CCAATCCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTT-----CA-T-TA-GTA----AT-ATAATACTAG-----TAATTGATCCTTGT-----AAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C---A-A-A--AGCCGG---CGCACAGAT-------G-----T-ATTTGAAACATCTAAAGTTTTC--A-TTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTGT--GTTTG--CTCCCT---A-AATTG-ATT-----GTT-TA-----TTACCGC-A-TGTCA--AAATGTTG--AATTC-TTCATAGAAATCT--TGAAGTTCTCAT---C--TCTTC-----GC-G-TG-GT-----------TT-CCTGG-CA----AT---------------GACAGATGTGTTAA------TAAAC--------AC--TA----T-TCCGG--GAACCGAGTT-TTA-TGTAAAT-ATAAACCAT-T---CT---GTG--TAAAAA-TATTTTC-AATCACC-----TTA-TTC---------------A-TAA-AA--GA-TCTTT---ATTTCTAT-A-----------ACCAA----AATAATTT-GT--C-AATTTC-------AA-TC-GACGAGAAATTGTG-T-----------TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacat-AAAGGAGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTT-----AA------GTA----AT-GTTAT----------CACC--AT-----G-----GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--A-TTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATCTATC-ATT----------AACGT-A-TGTTG--AAATGTTG--AATGC-T-----------T--T-A------GAAA--C--TTCC---AC------TG-TT-------GGTTTCACAGC--TA----AT---------------AT----------GA------CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAAT-TTA-TGTAAAT-ACAAAGTAGAA---TCTGTA----TAAAAA-TATTTTT-AATCCAT-----TTA-CT----------------A-CTAAAA--GA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-AA-CTGGT--C-AATTTC-------AA-TC-AATCAAAAACCACG-T-----------CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTT-----AA-T-TG-ATA----AT-ATGATA---G-----TACTTGAT-----TTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C---A-A-A--AACTGA---TTCAAAGATGTAAAATT-----TGATTTGAGGCATC-AAATCTTTC--AATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATTAATC-ATT-GATGCTTGTGACGTAG-CTTTG--GA-TGTTCTCACCGC-TGC---------T--TG----------------TTTTTAAATGGC-CATG-AC-------AAGCGTGCT----------------------------------------A------CAAAC--------ATTATT----T-TT-GG--GAGCTGTATT-T-A-TGTAAAC-ACACAGTATAT---CCTGT--G--TAAACAGTATATGT-AATCCAC-----TTA----------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-AA-CT-AT--C-AGTTTCTATCAAAAA-TC-GT-----------G-T-----------TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTC-----AA-T-GA-AAA----AC-AGTAAA---G-----TATTTGATCGTG-T-----AAAAC-ATGG-CAGCAA-A-----C-------TT----C---A-A-A--A-------------AG---------------T-ACTTAA---ATCTA-----TTC--A-TTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gAAATTGTTT--G-TTCTTT-CT-TATTTGT--GCTTG--CTGTCT---C-AATTG-ATTCACC-AT----------TAATGT-T-TGTCG--ATATATTG--AATGCTT-----------T--TGA------AATA--CAATTTGGAAAT--C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAA----------GATGTTGACAAAC--------AA-ACACGATT-TT-GG--AAGACAAATT-TTA-TGTAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTT-----AA-TTGATACATGTAAT-ATGATA---GACG--TATTTGAT-----TTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT---------------A--TGAAACTGCAAAGAT-------A-----T-ATTTGAGAAATCAAAACTTTGC--A-ATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAAC--------AT-G-A----T-TT-TG--AAGCCGGATTATTAATAT---T-ACA--GTTTAT---CCTTT--G--TAAAAGT-ATTTTC-AATCCACATATTTTG-TAA---------------A-C--------A-TTTTT---ATTTCTAT-A-----------C-CAA----AA-AA-CT-GT--C-ATTTTC-------AA-TC-G------------A-TCAGAAATCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 11 111 11 11 1 1 1 1 11 22 1 22 1 1 11 22 33333 1 2222 11 3333333 33333 77777777777777 333 111 1 1 222 1 222 1 1 1 11 222 1 1 1 1 222 11 11 1 22 11 11 222 11 22 11 11 11 1 11 11111 22222222222 11111 11111111111 111111111 555555555555555 4444444444444444444444444444444444444444444444 1 11 1 111 1 11111 3333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222 111 222222 11 11111 666666666666666666666666666666 11111111111 1111 1111111 88888888888888888888888888
lowQualScore : 5 88 5 00 88 7 999 99 44 7 3 3 3 7 3 7 44 6 00 7 3 00 7 6 6 3 7 3 88 6 00 7 7 1 33333 3 7 8888 7 7 88 6666666 6 33333 7 11111111111111 888 3 7 7 777 6 3 2 555 3 7 333 7 3 3 3 7 44 555 3 7 3 6 7 7 7 3 6 6 3 555 33 33 3 00 6 6 88 7 44 7 6 0 7 333 7 7 88 00 99 7 44 7 7 6 888 7 6 33 0 99 00 66 11111 4 11111111111 00000 4 33333333333 4 1 999999999 111111111111111 55 3 3 99999 33 4444444444444444444444444444444444444444444444 4 1 66 4 11 2 999999 4 0 3 11 8 0 8 0 222 0 00000 3 5 2 4444444444444 999 66 777 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 666666666666666666 3 7 55 2 3 3 4 3 3 111 888888 55 4 00000 000000000000000000000000000000 4 777 4 99999999999 4 6666 8 4 4 55 4 3333333 4 4 99999999999999999999999999
lowQualScore : . .. . .. .. . ... .. .. . . . . . . . .. . .. . . .. . . . . . . .. . .. . . . ..... . . .... . . .. ....... . ..... . .............. ... . . . ... . . . ... . . ... . . . . . .. ... . . . . . . . . . . . ... .. .. . .. . . .. . .. . . . . ... . . .. .. .. . .. . . . ... . . .. . .. .. .. ..... . ........... ..... . ........... . . ......... ............... .. . . ..... .. .............................................. . . .. . .. . ...... . . . .. . . . . ... . ..... . . . ............. ... .. ... . ................................................................................................................... .................. . . .. . . . . . . ... ...... .. . ..... .............................. . ... . ........... . .... . . . .. . ....... . . ..........................
lowQualScore : 5 55 5 77 33 3 000 33 77 3 3 3 3 3 3 3 77 7 77 3 3 77 3 7 7 3 3 3 33 7 77 3 3 0 33333 3 3 3333 3 3 33 7777777 7 33333 3 77777777777777 333 7 3 3 777 7 3 0 777 3 3 333 3 3 3 3 3 00 000 3 3 3 7 3 3 3 3 7 7 3 777 33 33 3 77 7 7 33 3 77 3 7 7 3 333 3 3 33 77 33 3 00 3 3 7 777 3 7 33 0 55 33 11 11111 4 99999999999 00000 0 99999999999 0 0 777777777 666666666666666 33 6 6 11111 77 1111111111111111111111111111111111111111111111 0 6 11 4 44 0 222222 4 0 2 00 0 6 0 8 444 6 88888 9 0 2 5555555555555 111 99 999 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555555555555 6 3 00 5 6 6 4 6 2 000 999999 11 0 00000 888888888888888888888888888888 0 000 0 00000000000 0 5555 0 0 0 55 0 0000000 0 0 77777777777777777777777777
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAAGTATAT---CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAAGTATAT---CCCGGAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAA-CAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAA--TGGCATCACATCCCTGACTGCACAGGCAAAATATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATTCTTCAACTCCTGACACCGAATACCAAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCCTCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAAT-TGC-ATGC-TATGCTCGGATATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTAAAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTC-G--TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGT-GATTCTTTACCCAATT-GA-AC-----AT-ATCATG---A-----TATTTT-C-----T-----AAATC-ATAG-GCACAA-A-----CCTG-TATTT----C---C-C-ATTA--TGAT--TGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAACTTTTTCAA-TTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-TC-TTGC--ACTTAAATT-CCT---A-AA-TG-ATTTATCG---TCA-------AACAT-GCTATTG--AAATG-TC--AACGC-TC----------T--TG--------ATA--C--TTTTTAAA--GCTT-TG-GT-------AGATCTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----TATT-GGGTGAGCCAGCTC-TTG-TGT--AT-CCAAAATATGT---CCCAGAAGGTTAAAAATT-TTTTC--ATGCAC-----TTG-TTC---------------A-CA--GA--GA--TTTT---ATTTC-AC-A-----------A-CAA----AATAA-TT-GT--CAAATTTC-------AA-TT-G------------GTT-----------CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATTTGCC---TTTA-----ATCA----A-TGTTA--AAACATTG--AATGT-T-----------TCTTGG------CATA--A--TCTTGGAATGAA-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------AT----------GATTA---CAAAT--------AC-AAT----T-TT-GG--GA-TTAAGTT-TAA-TGTAAAT-ATAAAGCATAT---CCTGT-AT--TGAAA--TATTTTCAAATCCAC-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATTTTTT---TTTTCTAT-G-----------A-CAA----AG-AC-AG-GT--G-AATTTC-------AA-ACAA------------A-TGAAAA------CCATGCCCCTTTAtc
gi|11 : -TT-GG--GAGCCTGATT---A-TGTAAAT-ACAGAGTATATATATCCTGACG--TAAA---TAT-----AATCCAC-----TTA-TTT---------------T-T---GAAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TG-T------------G-T-----------CCATGTCCCTTTA
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgata----------GG------CAAAC--------AT-G-A----T-TTCAG--GAGCCAAAGT-TTA-TGAAAAT-ACAAAGTGCAT---CTTG--CG--TGAAA--TATCTTT-GATTCAC--------------------------------------A-TT---------------------------A-CAA----AA-AA-TT-AT--C-AATTTC-------AA-TT-GATAAGAAATTGTG-T-----------CCACGCCCTTTTGGatcatacaggctaatgcatt
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAAT------ATTTTGATATTC-----AT-T-GA---------T-ATAATA---G-----TATTTAATTCATGT-----AAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----TAAAA-C-A--A--TGA---CACAAAGATA------TACATAT-ATTTAAAACATTCAAA-----C--G-TTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagAAGC-ATAG-CAACAA-A-----TCTA-AATTT----C---A-A-A--AACTGA---TGCAAAGAT-------gtatgtcacgt
gi|18 : tgaaaacatgtcattcgtgttCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTT-----AA-T-TC-ATG----AT-ATGATG---AATTGTTATTTAAT-----TCGC--AGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAAC---A-A-A--A--TGA---TACAAAAATA------TA----T-ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|2 : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC-TTT--AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAA--TACTGACA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATT-CTC--ACTTCTG----C--ATACCAG--AG-----CCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCC-A-ATCC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTAT-ATTAGCAATGCATATGCTA---CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTAAA-TCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACA--CTTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTT-----AA-T-GA-ACA----AT-ATCATA---G-----TATTC--------T-----AAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C---A-TTA--A--TGA---TGCAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A-TTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--ACTTAAATTCCCT---A-AACTG-ATTTATCGA-TTCA-----ATAACAT-G-TATTG--AAATGTTC--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACAGC-T-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCAGATC-TTG-TGTATCC-ACAAAATATGT---CCCAGAAG--TAAAAATTATTTTC-AATGCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TT-G------------G-T-----------CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CA-GTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT-AAA-CCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAAGACG-CATCACATCC---AC-GCACAGGCAAAATCACTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTATTTCTC--ACTTCTG----C--ATACCTAGAAG-----CTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCC-A-ATCCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT-TT-AT-AT-AGCAATG-ATATGCTAG--TATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAATCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACA--CTTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTT---TC-GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCCCATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTT-----AA-T-GA-ACA----ATAATCA-A---G-----TATT--AC-----T-----AAAACTATGG-CAACAATA-----CCTGTCTTTT----C---ATT-A--A--TGA---T-CAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A--TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATTCCA-----ATAACAT-G-TA-TGATAAGTGTTC---CCGC-T-----------T--TGAC-----CATAAGCG-TTTTTAAACG-----CG-GT-------AGTC-TACCTC--------AC---------------TA----------GA------CAAAC--------AC-AC-----T-TT-GG--GAGCCAGA-T-TTG-TGT--ATCACAAA-TATATG--TCCAGAAG--TAAAAATAATTTTC-AATGCAC-----TTGTTTC---------------ACC---GA--GA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-AA-TT-GTCCC-AATTCC-------AAGTT-G------------G-CTG---------CCAATCCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTT-----CA-T-TA-GTA----AT-ATAATACTAG-----TAATTGATCCTTGT-----AAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C---A-A-A--AGCCGG---CGCACAGAT-------G-----T-ATTTGAAACATCTAAAGTTTTC--A-TTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTGT--GTTTG--CTCCCT---A-AATTG-ATT----G--TTTA-----TTACCGC-A-TGTCA--AAATGTTG--AATTC-TTCATAGAAATCT--TGAAGTTCTCAT---C--TCTTC-----GC-G-TG-GT-----------TT-CCTGG-CA----AT---------------GACAGATGTGTTAA------TAAAC--------AC--TA----T-TCCGG--GAACCGAGTT-TTA-TGTAAAT-ATAAA--CCAT---TCTGT--G--TAAAAA-TATTTTC-AATCACC-----TTA-TTC---------------A-TAA-AA--GA-TCTTT---ATTTCTAT-A-----------ACCAA----AATAATTT-GT--C-AATTTC-------AA-TC-GACGAGAAATTGTG-T-----------TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacat-AAAGGAGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTT-----AA------GTA----AT-GTTAT----------CACC--AT-----G-----GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--A-TTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATCTATCA--TT---------AACGT-A-TGTTG--AAATGTTG--AATGC-T-----------T--T-A------GAAA--C--TTCC---AC------TG-TT-------GGTTTCACAGC--TA----AT---------------AT----------GA------CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAAT-TTA-TGTAAAT-ACAAAGTAGAA---TCTGTA----TAAAAA-TATTTTT-AATCCAT-----TTA-CT----------------A-CTAAAA--GA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-AA-CTGGT--C-AATTTC-------AA-TC-AATCAAAAACCACG-T-----------CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTT-----AA-T-TG-ATA----AT-ATGATA---G-----TACTTGAT-----TTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C---A-A-A--AACTGA---TTCAAAGATGTAAAATT-----TGATTTGAGGCATC-AAATCTTTC--AATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATTAATCA--TTGATGCTTGTGACGTAG-CTTTG--GA-TGTTCTCACCGC-TGC---------T--TG----------------TTTTTAAATGGC-CATG-AC-------AAGCGTGCT----------------------------------------A------CAAAC--------ATTATT----T-TT-GG--GAGCTGTATT-T-A-TGTAAAC-ACACAGTATAT---CCTGT--G--TAAACAGTATATGT-AATCCAC-----TTA----------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-AA-CT-AT--C-AGTTTCTATCAAAAA-TC-GT-----------G-T-----------TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTC-----AA-T-GA-AAA----AC-AGTAAA---G-----TATTTGATCGTG-T-----AAAAC-ATGG-CAGCAA-A-----C-------TT----C---A-A-A--A-------------AG---------------T-ACTTAA---ATCTA-----TTC--A-TTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gAAATTGTTT--G-TTCTTT-CT-TATTTGT--GCTTG--CTGTCT---C-AATTG-ATTCACCA--T---------TAATGT-T-TGTCG--ATATATTG--AATGCTT-----------T--TGA------AATA--CAATTTGGAAAT--C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAA----------GATGTTGACAAAC--------AA-ACACGATT-TT-GG--AAGACAAATT-TTA-TGTAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTT-----AA-TTGATACATGTAAT-ATGATA---GACG--TATTTGAT-----TTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT---------------A--TGAAACTGCAAAGAT-------A-----T-ATTTGAGAAATCAAAACTTTGC--A-ATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAAC--------AT-G-A----T-TT-TG--AAGCCGGATTATTAATAT---T-ACA--GTTTAT---CCTTT--G--TAAAAGT-ATTTTC-AATCCACATATTTTG-TAA---------------A-C--------A-TTTTT---ATTTCTAT-A-----------C-CAA----AA-AA-CT-GT--C-ATTTTC-------AA-TC-G------------A-TCAGAAATCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 11 111 11 11 1 1 1 1 11 22 1 22 1 1 11 22 33333 1 2222 11 3333333 33333 77777777777777 333 111 1 1 222 1 222 1 1 1 11 222 1 1 1 1 222 11 11 1 22 11 11 222 11 22 11 11 11 1 11 11111 22222222222 11111 11111111111 111111111 555555555555555 4444444444444444444444444444444444444444444444 1 11 1 111 1 11111 3333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222 333333 11 11111 666666666666666666666666666666 11111111111 1111 1111111 88888888888888888888888888
lowQualScore : 5 88 5 00 88 7 999 99 44 7 3 3 3 7 3 7 44 6 00 7 3 00 7 6 6 3 7 3 88 6 00 7 7 1 33333 3 7 8888 7 7 88 6666666 6 33333 7 11111111111111 888 3 7 7 777 6 3 2 555 3 7 333 7 3 3 3 7 44 555 3 7 3 6 7 7 7 3 6 6 3 555 33 33 3 00 6 6 88 7 44 7 6 0 7 333 7 7 88 00 99 7 44 7 7 6 888 7 6 33 0 99 00 66 11111 4 11111111111 00000 4 33333333333 4 1 999999999 111111111111111 55 3 3 99999 33 4444444444444444444444444444444444444444444444 4 1 66 4 11 2 999999 4 0 3 11 8 0 8 0 222 0 00000 3 5 2 4444444444444 999 66 777 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 666666666666666666 3 7 55 2 3 3 4 3 4 8888 3 111111 55 4 00000 000000000000000000000000000000 4 777 4 99999999999 4 6666 8 4 4 55 4 3333333 4 4 99999999999999999999999999
lowQualScore : . .. . .. .. . ... .. .. . . . . . . . .. . .. . . .. . . . . . . .. . .. . . . ..... . . .... . . .. ....... . ..... . .............. ... . . . ... . . . ... . . ... . . . . . .. ... . . . . . . . . . . . ... .. .. . .. . . .. . .. . . . . ... . . .. .. .. . .. . . . ... . . .. . .. .. .. ..... . ........... ..... . ........... . . ......... ............... .. . . ..... .. .............................................. . . .. . .. . ...... . . . .. . . . . ... . ..... . . . ............. ... .. ... . ................................................................................................................... .................. . . .. . . . . . . .... . ...... .. . ..... .............................. . ... . ........... . .... . . . .. . ....... . . ..........................
lowQualScore : 5 55 5 77 33 3 000 33 77 3 3 3 3 3 3 3 77 7 77 3 3 77 3 7 7 3 3 3 33 7 77 3 3 0 33333 3 3 3333 3 3 33 7777777 7 33333 3 77777777777777 333 7 3 3 777 7 3 0 777 3 3 333 3 3 3 3 3 00 000 3 3 3 7 3 3 3 3 7 7 3 777 33 33 3 77 7 7 33 3 77 3 7 7 3 333 3 3 33 77 33 3 00 3 3 7 777 3 7 33 0 55 33 11 11111 4 99999999999 00000 0 99999999999 0 0 777777777 666666666666666 33 6 6 11111 77 1111111111111111111111111111111111111111111111 0 6 11 4 44 0 222222 4 0 2 00 0 6 0 8 444 6 88888 9 0 2 5555555555555 111 99 999 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555555555555 6 3 00 5 6 6 4 6 0 5555 7 000000 11 0 00000 888888888888888888888888888888 0 000 0 00000000000 0 5555 0 0 0 55 0 0000000 0 0 77777777777777777777777777
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAA-CAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAA--TGGCATCACATCCCTGACTGCACAGGCAAAATATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATTCTTCAACTCCTGACACCGAATACCAAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCCTCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAAT-TGC-ATGC-TATGCTCGGATATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTAAAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTC-G--TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGT-GATTCTTTACCCAATT-GA-AC-----AT-ATCATG---A-----TATTTT-C-----T-----AAATC-ATAG-GCACAA-A-----CCTG-TATTT----C---C-C-ATTA--TGAT--TGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAACTTTTTCAA-TTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-TC-TTGC--ACTTAAATT-CCT---A-AA-TG-ATTTATCG---TCA-------AACAT-GCTATTG--AAATG-TC--AACGC-TC----------T--TG--------ATA--C--TTTTTAAA--GCTT-TG-GT-------AGATCTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----TATT-GGGTGAGCCAGCTC-TTG-TGT--AT-CCAAA-ATATGT----CCCAGAAGGTTAAAAATT-TTTTC--ATGCAC-----TTG-TTC---------------A-CA--GA--GA--TTTT---ATTTC-AC-A-----------A-CAA----AATAA-TT-GT--CAAATTTC-------AA-TT-G------------GTT-----------CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATTTGCC---TTTA-----ATCA----A-TGTTA--AAACATTG--AATGT-T-----------TCTTGG------CATA--A--TCTTGGAATGAA-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------AT----------GATTA---CAAAT--------AC-AAT----T-TT-GG--GA-TTAAGTT-TAA-TGTAAAT-ATAAA-GCATAT----CCTGT-AT--TGAAA--TATTTTCAAATCCAC-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATTTTTT---TTTTCTAT-G-----------A-CAA----AG-AC-AG-GT--G-AATTTC-------AA-ACAA------------A-TGAAAA------CCATGCCCCTTTAtc
gi|11 : -TT-GG--GAGCCTGATT---A-TGTAAAT-ACAGA-GTATATATATCCTG-ACG--TAAA---TAT-----AATCCAC-----TTA-TTT---------------T-T---GAAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TG-T------------G-T-----------CCATGTCCCTTTA
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgata----------GG------CAAAC--------AT-G-A----T-TTCAG--GAGCCAAAGT-TTA-TGAAAAT-ACAAA-GTGCAT----CTTGC--G--TGAAA--TATCTTT-GATTCAC--------------------------------------A-TT---------------------------A-CAA----AA-AA-TT-AT--C-AATTTC-------AA-TT-GATAAGAAATTGTG-T-----------CCACGCCCTTTTGGatcatacaggctaatgcatt
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAAT------ATTTTGATATTC-----AT-T-GA---------T-ATAATA---G-----TATTTAATTCATGT-----AAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----TAAAA-C-A--A--TGA---CACAAAGATA------TACATAT-ATTTAAAACATTCAAA-----C--G-TTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagAAGC-ATAG-CAACAA-A-----TCTA-AATTT----C---A-A-A--AACTGA---TGCAAAGAT-------gtatgtcacgt
gi|18 : tgaaaacatgtcattcgtgttCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTT-----AA-T-TC-ATG----AT-ATGATG---AATTGTTATTTAAT-----TCGC--AGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAAC---A-A-A--A--TGA---TACAAAAATA------TA----T-ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|2 : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC-TTT--AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAA--TACTGACA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATT-CTC--ACTTCTG----C--ATACCAG--AG-----CCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCC-A-ATCC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTAT-ATTAGCAATGCATATGCTA---CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTAAA-TCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACA--CTTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTT-----AA-T-GA-ACA----AT-ATCATA---G-----TATTC--------T-----AAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C---A-TTA--A--TGA---TGCAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A-TTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--ACTTAAATTCCCT---A-AACTG-ATTTATCGA-TTCA-----ATAACAT-G-TATTG--AAATGTTC--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACAGC-T-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCAGATC-TTG-TGTATCC-ACAAA-ATATGT----CCCAGAAG--TAAAAATTATTTTC-AATGCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TT-G------------G-T-----------CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CA-GTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT-AAA-CCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAAGACG-CATCACATCC---AC-GCACAGGCAAAATCACTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTATTTCTC--ACTTCTG----C--ATACCTAGAAG-----CTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCC-A-ATCCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT-TT-AT-AT-AGCAATG-ATATGCTAG--TATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAATCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACA--CTTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTT---TC-GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCCCATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTT-----AA-T-GA-ACA----ATAATCA-A---G-----TATT--AC-----T-----AAAACTATGG-CAACAATA-----CCTGTCTTTT----C---ATT-A--A--TGA---T-CAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A--TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATTCCA-----ATAACAT-G-TA-TGATAAGTGTTC---CCGC-T-----------T--TGAC-----CATAAGCG-TTTTTAAACG-----CG-GT-------AGTC-TACCTC--------AC---------------TA----------GA------CAAAC--------AC-AC-----T-TT-GG--GAGCCAGA-T-TTG-TGT--ATCACAAATATATGT----CCAG-AAG--TAAAAATAATTTTC-AATGCAC-----TTGTTTC---------------ACC---GA--GA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-AA-TT-GTCCC-AATTCC-------AAGTT-G------------G-CTG---------CCAATCCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTT-----CA-T-TA-GTA----AT-ATAATACTAG-----TAATTGATCCTTGT-----AAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C---A-A-A--AGCCGG---CGCACAGAT-------G-----T-ATTTGAAACATCTAAAGTTTTC--A-TTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTGT--GTTTG--CTCCCT---A-AATTG-ATT----G--TTTA-----TTACCGC-A-TGTCA--AAATGTTG--AATTC-TTCATAGAAATCT--TGAAGTTCTCAT---C--TCTTC-----GC-G-TG-GT-----------TT-CCTGG-CA----AT---------------GACAGATGTGTTAA------TAAAC--------AC--TA----T-TCCGG--GAACCGAGTT-TTA-TGTAAAT-ATAAA---CCAT----TCTGT--G--TAAAAA-TATTTTC-AATCACC-----TTA-TTC---------------A-TAA-AA--GA-TCTTT---ATTTCTAT-A-----------ACCAA----AATAATTT-GT--C-AATTTC-------AA-TC-GACGAGAAATTGTG-T-----------TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacat-AAAGGAGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTT-----AA------GTA----AT-GTTAT----------CACC--AT-----G-----GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--A-TTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATCTATCA--TT---------AACGT-A-TGTTG--AAATGTTG--AATGC-T-----------T--T-A------GAAA--C--TTCC---AC------TG-TT-------GGTTTCACAGC--TA----AT---------------AT----------GA------CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAAT-TTA-TGTAAAT-ACAAA-GTAGAA----TCTGTA----TAAAAA-TATTTTT-AATCCAT-----TTA-CT----------------A-CTAAAA--GA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-AA-CTGGT--C-AATTTC-------AA-TC-AATCAAAAACCACG-T-----------CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTT-----AA-T-TG-ATA----AT-ATGATA---G-----TACTTGAT-----TTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C---A-A-A--AACTGA---TTCAAAGATGTAAAATT-----TGATTTGAGGCATC-AAATCTTTC--AATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATTAATCA--TTGATGCTTGTGACGTAG-CTTTG--GA-TGTTCTCACCGC-TGC---------T--TG----------------TTTTTAAATGGC-CATG-AC-------AAGCGTGCT----------------------------------------A------CAAAC--------ATTATT----T-TT-GG--GAGCTGTATT-T-A-TGTAAAC-ACACA-GTATAT----CCTGT--G--TAAACAGTATATGT-AATCCAC-----TTA----------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-AA-CT-AT--C-AGTTTCTATCAAAAA-TC-GT-----------G-T-----------TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTC-----AA-T-GA-AAA----AC-AGTAAA---G-----TATTTGATCGTG-T-----AAAAC-ATGG-CAGCAA-A-----C-------TT----C---A-A-A--A-------------AG---------------T-ACTTAA---ATCTA-----TTC--A-TTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gAAATTGTTT--G-TTCTTT-CT-TATTTGT--GCTTG--CTGTCT---C-AATTG-ATTCACCA--T---------TAATGT-T-TGTCG--ATATATTG--AATGCTT-----------T--TGA------AATA--CAATTTGGAAAT--C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAA----------GATGTTGACAAAC--------AA-ACACGATT-TT-GG--AAGACAAATT-TTA-TGTAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTT-----AA-TTGATACATGTAAT-ATGATA---GACG--TATTTGAT-----TTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT---------------A--TGAAACTGCAAAGAT-------A-----T-ATTTGAGAAATCAAAACTTTGC--A-ATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAAC--------AT-G-A----T-TT-TG--AAGCCGGATTATTAATAT---T-ACA---GTTTAT----CCTTT--G--TAAAAGT-ATTTTC-AATCCACATATTTTG-TAA---------------A-C--------A-TTTTT---ATTTCTAT-A-----------C-CAA----AA-AA-CT-GT--C-ATTTTC-------AA-TC-G------------A-TCAGAAATCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 11 111 11 11 1 1 1 1 11 22 1 22 1 1 11 22 33333 1 2222 11 3333333 33333 77777777777777 333 111 1 1 222 1 222 1 1 1 11 222 1 1 1 1 222 11 11 1 22 11 11 222 11 22 11 11 11 1 11 11111 22222222222 11111 11111111111 111111111 555555555555555 4444444444444444444444444444444444444444444444 1 11 1 111 1 11111 3333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222 333333 11 11111 666666666666666666666666666666 11111111111 1111 1111111 88888888888888888888888888
lowQualScore : 5 88 5 00 88 7 999 99 44 7 3 3 3 7 3 7 44 6 00 7 3 00 7 6 6 3 7 3 88 6 00 7 7 1 33333 3 7 8888 7 7 88 6666666 6 33333 7 11111111111111 888 3 7 7 777 6 3 2 555 3 7 333 7 3 3 3 7 44 555 3 7 3 6 7 7 7 3 6 6 3 555 33 33 3 00 6 6 88 7 44 7 6 0 7 333 7 7 88 00 99 7 44 7 7 6 888 7 6 33 0 99 00 66 11111 4 11111111111 00000 4 33333333333 4 1 999999999 111111111111111 55 3 3 99999 33 4444444444444444444444444444444444444444444444 4 1 66 4 11 2 999999 4 0 3 11 8 0 8 0 222 0 00000 3 5 2 4444444444444 999 66 777 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 666666666666666666 3 7 55 2 3 3 4 3 4 8888 3 111111 55 4 00000 000000000000000000000000000000 4 777 4 99999999999 4 6666 8 4 4 55 4 3333333 4 4 99999999999999999999999999
lowQualScore : . .. . .. .. . ... .. .. . . . . . . . .. . .. . . .. . . . . . . .. . .. . . . ..... . . .... . . .. ....... . ..... . .............. ... . . . ... . . . ... . . ... . . . . . .. ... . . . . . . . . . . . ... .. .. . .. . . .. . .. . . . . ... . . .. .. .. . .. . . . ... . . .. . .. .. .. ..... . ........... ..... . ........... . . ......... ............... .. . . ..... .. .............................................. . . .. . .. . ...... . . . .. . . . . ... . ..... . . . ............. ... .. ... . ................................................................................................................... .................. . . .. . . . . . . .... . ...... .. . ..... .............................. . ... . ........... . .... . . . .. . ....... . . ..........................
lowQualScore : 5 55 5 77 33 3 000 33 77 3 3 3 3 3 3 3 77 7 77 3 3 77 3 7 7 3 3 3 33 7 77 3 3 0 33333 3 3 3333 3 3 33 7777777 7 33333 3 77777777777777 333 7 3 3 777 7 3 0 777 3 3 333 3 3 3 3 3 00 000 3 3 3 7 3 3 3 3 7 7 3 777 33 33 3 77 7 7 33 3 77 3 7 7 3 333 3 3 33 77 33 3 00 3 3 7 777 3 7 33 0 55 33 11 11111 4 99999999999 00000 0 99999999999 0 0 777777777 666666666666666 33 6 6 11111 77 1111111111111111111111111111111111111111111111 0 6 11 4 44 0 222222 4 0 2 00 0 6 0 8 444 6 88888 9 0 2 5555555555555 111 99 999 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555555555555 6 3 00 5 6 6 4 6 0 5555 7 000000 11 0 00000 888888888888888888888888888888 0 000 0 00000000000 0 5555 0 0 0 55 0 0000000 0 0 77777777777777777777777777
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAA-CAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAA--TGGCATCACATCCCTGACTGCACAGGCAAAATATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATTCTTCAACTCCTGACACCGAATACCAAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCCTCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAAT-TGC-ATGC-TATGCTCGGATATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTAAAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTC-G--TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGT-GATTCTTTACCCAATT-GA-AC-----AT-ATCATG---A-----TATTTT-C-----T-----AAATC-ATAG-GCACAA-A-----CCTG-TATTT----C---C-C-ATTA--TGAT--TGCAAA-AC-------T-----T-ATTTGAGA-ATTTAAACTTTTTCAA-TTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-TC-TTGC--ACTTAAATT-CCT---A-AA-TG-ATTTATCG---TCA-------AACAT-GCTATTG--AAATG-TC--AACGC-TC----------T--TG--------ATA--C--TTTTTAAA--GCTT-TG-GT-------AGATCTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----TATT-GGGTGAGCCAGCTC-TTG-TGT--AT-CCAAA-ATATGT----CCCAGAAGGTTAAAAATT-TTTTC--ATGCAC-----TTG-TTC---------------A-CA--GA--GA--TTTT---ATTTC-AC-A-----------A-CAA----AATAA-TT-GT--CAAATTTC-------AA-TT-G------------GTT-----------CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATTTGCC---TTTA-----ATCA----A-TGTTA--AAACATTG--AATGT-T-----------TCTTGG------CATA--A--TCTTGGAATGAA-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------AT----------GATTA---CAAAT--------AC-AAT----T-TT-GG--GA-TTAAGTT-TAA-TGTAAAT-ATAAA-GCATAT----CCTGT-AT--TGAAA--TATTTTCAAATCCAC-----TTT-TTCTTAAAAAAAAAAAAAA-A---AA--GATTTTTT---TTTTCTAT-G-----------A-CAA----AG-AC-AG-GT--G-AATTTC-------AA-ACAA------------A-TGAAAA------CCATGCCCCTTTAtc
gi|11 : -TT-GG--GAGCCTGATT---A-TGTAAAT-ACAGA-GTATATATATCCTG-ACG--TAAA---TAT-----AATCCAC-----TTA-TTT---------------T-T---GAAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TG-T------------G-T-----------CCATGTCCCTTTA
gi|14 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaataaaaatgata----------GG------CAAAC--------AT-G-A----T-TTCAG--GAGCCAAAGT-TTA-TGAAAAT-ACAAA-GTGCAT----CTTGC--G--TGAAA--TATCTTT-GATTCAC--------------------------------------A-TT---------------------------A-CAA----AA-AA-TT-AT--C-AATTTC-------AA-TT-GATAAGAAATTGTG-T-----------CCACGCCCTTTTGGatcatacaggctaatgcatt
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAAT------ATTTTGATATTC-----AT-T-GA---------T-ATAATA---G-----TATTTAATTCATGT-----AAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----TAAAA-C-A--A--TGA---CACAAAGATA------TACATAT-ATTTAAAACATTCAAA-----C--G-TTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagAAGC-ATAG-CAACAA-A-----TCTA-AATTT----C---A-A-A--AACTGA---TGCAAAGAT-------gtatgtcacgt
gi|18 : tgaaaacatgtcattcgtgttCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTT-----AA-T-TC-ATG----AT-ATGATG---AATTGTTATTTAAT-----TCGC--AGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAAC---A-A-A--A--TGA---TACAAAAATA------TA----T-ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|2 : ACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC-TTT--AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAA--TACTGACA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATT-CTC--ACTTCTG----C--ATACCAG--AG-----CCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCC-A-ATCC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTAT-ATTAGCAATGCATATGCTA---CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTAAA-TCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACA--CTTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTT-----AA-T-GA-ACA----AT-ATCATA---G-----TATTC--------T-----AAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C---A-TTA--A--TGA---TGCAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A-TTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--ACTTAAATTCCCT---A-AACTG-ATTTATCGA-TTCA-----ATAACAT-G-TATTG--AAATGTTC--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACAGC-T-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCAGATC-TTG-TGTATCC-ACAAA-ATATGT----CCCAGAAG--TAAAAATTATTTTC-AATGCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TT-G------------G-T-----------CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CA-GTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT-AAA-CCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAAGACG-CATCACATCC---AC-GCACAGGCAAAATCACTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTATTTCTC--ACTTCTG----C--ATACCTAGAAG-----CTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCC-A-ATCCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT-TT-AT-AT-AGCAATG-ATATGCTAG--TATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAATCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACA--CTTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTT---TC-GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCCCATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTT-----AA-T-GA-ACA----ATAATCA-A---G-----TATT--AC-----T-----AAAACTATGG-CAACAATA-----CCTGTCTTTT----C---ATT-A--A--TGA---T-CAAAGAC-------T-----T-ATTTGAGACATTTAAACTTTTC--A--TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATTCCA-----ATAACAT-G-TA-TGATAAGTGTTC---CCGC-T-----------T--TGAC-----CATAAGCG-TTTTTAAACG-----CG-GT-------AGTC-TACCTC--------AC---------------TA----------GA------CAAAC--------AC-AC-----T-TT-GG--GAGCCAGA-T-TTG-TGT--ATCACAAATATATGT----CCAG-AAG--TAAAAATAATTTTC-AATGCAC-----TTGTTTC---------------ACC---GA--GA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-AA-TT-GTCCC-AATTCC-------AAGTT-G------------G-CTG---------CCAATCCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTT-----CA-T-TA-GTA----AT-ATAATACTAG-----TAATTGATCCTTGT-----AAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C---A-A-A--AGCCGG---CGCACAGAT-------G-----T-ATTTGAAACATCTAAAGTTTTC--A-TTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTGT--GTTTG--CTCCCT---A-AATTG-ATT----G--TTTA-----TTACCGC-A-TGTCA--AAATGTTG--AATTC-TTCATAGAAATCT--TGAAGTTCTCAT---C--TCTTC-----GC-G-TG-GT-----------TT-CCTGG-CA----AT---------------GACAGATGTGTTAA------TAAAC--------AC--TA----T-TCCGG--GAACCGAGTT-TTA-TGTAAAT-ATAAA---CCAT----TCTGT--G--TAAAAA-TATTTTC-AATCACC-----TTA-TTC---------------A-TAA-AA--GA-TCTTT---ATTTCTAT-A-----------ACCAA----AATAATTT-GT--C-AATTTC-------AA-TC-GACGAGAAATTGTG-T-----------TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacat-AAAGGAGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTT-----AA------GTA----AT-GTTAT----------CACC--AT-----G-----GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--A-TTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATCTATCA--TT---------AACGT-A-TGTTG--AAATGTTG--AATGC-T-----------T--T-A------GAAA--C--TTCC---AC------TG-TT-------GGTTTCACAGC--TA----AT---------------AT----------GA------CAAGCATTGACAAAC-ACAAT--T-TT-GG--AAGCCAGAAT-TTA-TGTAAAT-ACAAA-GTAGAA----TCTGTA----TAAAAA-TATTTTT-AATCCAT-----TTA-CT----------------A-CTAAAA--GA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-AA-CTGGT--C-AATTTC-------AA-TC-AATCAAAAACCACG-T-----------CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTT-----AA-T-TG-ATA----AT-ATGATA---G-----TACTTGAT-----TTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C---A-A-A--AACTGA---TTCAAAGATGTAAAATT-----TGATTTGAGGCATC-AAATCTTTC--AATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATTAATCA--TTGATGCTTGTGACGTAG-CTTTG--GA-TGTTCTCACCGC-TGC---------T--TG----------------TTTTTAAATGGC-CATG-AC-------AAGCGTGCT----------------------------------------A------CAAAC--------ATTATT----T-TT-GG--GAGCTGTATT-T-A-TGTAAAC-ACACA-GTATAT----CCTGT--G--TAAACAGTATATGT-AATCCAC-----TTA----------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-AA-CT-AT--C-AGTTTCTATCAAAAA-TC-GT-----------G-T-----------TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTC-----AA-T-GA-AAA----AC-AGTAAA---G-----TATTTGATCGTG-T-----AAAAC-ATGG-CAGCAA-A-----C-------TT----C---A-A-A--A-------------AG---------------T-ACTTAA---ATCTA-----TTC--A-TTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gAAATTGTTT--G-TTCTTT-CT-TATTTGT--GCTTG--CTGTCT---C-AATTG-ATTCACCA--T---------TAATGT-T-TGTCG--ATATATTG--AATGCTT-----------T--TGA------AATA--CAATTTGGAAAT--C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAA----------GATGTTGACAAAC--------AA-ACACGATT-TT-GG--AAGACAAATT-TTA-TGTAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTT-----AA-TTGATACATGTAAT-ATGATA---GACG--TATTTGAT-----TTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT---------------A--TGAAACTGCAAAGAT-------A-----T-ATTTGAGAAATCAAAACTTTGC--A-ATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAAC--------AT-G-A----T-TT-TG--AAGCCGGATTATTAATAT---T-ACA---GTTTAT----CCTTT--G--TAAAAGT-ATTTTC-AATCCACATATTTTG-TAA---------------A-C--------A-TTTTT---ATTTCTAT-A-----------C-CAA----AA-AA-CT-GT--C-ATTTTC-------AA-TC-G------------A-TCAGAAATCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
blockSeqs : . . A AA . A TG GA AT A A . . T . A AT C GA A . T A G G . A . GA G T T A T . . T . T T . C G . T C CCC G T T A C . T T T T . A T . T A CA G T T G C A A A . C G . T GG GG A AA C C . A TT A C T . T A . TA CT A TG T T C CTC T G G A CA A TA CCCCC T ACCAGTATTTA . . TGATACATGTA A A AATTGT TAATTCATGT TA T T ATTTA TC TAAAACAATGACACAAAGATATACATA G C . A TC A GACGAC T A G . T T G CAC A CCAA G A T ATTGATGCTTG AG AT CTC T TTGAAATACAATTTGGAAATCTTGTTGTTCTGACCTTTGCACGTGATTTCATGGCTATGATGAAGATGTTGA ATTGACAAACACAAT . C . A A A A C T ATAT T GAAG AT A ATATT TTTCTTAAAAAAAAAAAAAAAAA T CTA C TCTATTTCTAT C AAAC T T G CC . TATCAAA G A ATAAGAAATTGTGT
blockSeqs : . . A . A A . . . . . . . A C A . . . . . . . A . . . . . . C . . . . . . . C . . . C . . T . A . . . . . . . . . . . A A . . . . C A . . . C . . . G G . A . . . A T A . . . . A . . T A T T . C CC T . G . CC G . . . AATATTT . . TCATG . G CTAG TGATCCTTGT A . . . A CAAAAACTGATTCAAAGATGTAAAATT . C . . AA A ACGA . . G . . T . A A AT C . T GATTCCAA A . G . TCATAGAAATCTTGAAGTTCTCATCTCTTCGCGTGGTTTCCTGGCAATGACAGATGTGTTAA AAACACGAT . C . T . . A . . . T TAT AT . . ATTTTTGAAA . . . . . G . . . . . . . . ACGAGAAATTGTGT
blockSeqs : . AG G . . . TATCTA . . GAACA . C GACG TGATTTGTTT A . . . A AAAACAAAATGATACAAAAATATA . C . . AA C ACGT . . A . . . . G . C C . T GATTCAA G . C . TCTTGGCATAATCTTGGAATGAAATGTGTGCAACAAAGCTTATTCTAGCATGATTA ATTATT . . . A . . A . . . T ACG AG . . GTTTCACCGA . . . . . G . . . . . . . . ATCAAAAACCACGT
blockSeqs : G . . . TAAGTA . . GAACA . C G TGATTTGTGT G . . . A CAAAAGCCGGCGCACAGATG . G . . TC A AAGG . . . . . . . G . A T . T GTTTAT G . C . TTGACATACTTTTTAAACAGCTTGGTAGTCTTACCTCCAATAAGA ACAAT . . . A . . A . . . C AAG GT . . ATTCATAAAA . . . . . . . . . . . . . . ATCAGAAATCGTG
blockSeqs : . . . . TATTCA . . TAGTA . A G TGATCGTGT A . . . T CATTAATGATGCAAAGACT . C . . TC T AAGG . . A T . A TTTAA A . G . TTGACCATAAGCGTTTTTAAACGCGGTAGTCTACCTCACTAGA ACACA . . . A . . A . . . A CG A . . ACTACTAAAA . . . . . . . . . . . . . . ATGAAAA
blockSeqs : . . . ATTTT . . TGATA . T G TAATTCGC A . . . A CATTAATGATCAAAGACT . T . . TC A TAGA . . A T . C ATT A . G . TTAGAAACTTCCACTGTTGGTTTCACAGCTAATATGA ATGA . . . G . . A . . . T TG A . . GTTCACGA . . . . . . . . . . . . . . GCTG
blockSeqs : . . . TAAGT . . GAAAA . G G ACT A . . . A ATGAAACTGCAAAGATA . C . . CC A AAGG . . C T . . AT T . G . GCTTGTTTTTAAATGGCCATGACAAGCGTGCTA ACAC . . . A . . A . . . T TA . . . GTAAAC . . . . . . . . . . . . . . TGT
blockSeqs : . . . A . . GTA . T G ATG G . . . A CAAAAAG . . . . TT . . . ACTA . . . G . . A . . . T TG . . . A . . . . . . . . . . . . . . GT
blockSeqs : . . GA . G . CT A . . . A . . . ATGA . . . A . . . . . . T TG . . . . . . . . . . . . . . . . . . GT
blockSeqs : G . . . . . . . G . . . .
blockSeqCons : G* TATTTA***** ***** NAATA****** TGATTCGTGT***** CAAATGACGCAAAGATT***************************** ** AAGG** ** ATTTA******** A** ACGAT************* ** TG**** GTTCCGAAA********************* ATAGAAATGT****************
originalCons : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTT-----AA-T-GA-ACA----AT-ATNATA---G-----TATTTGAT-----T-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C---A-N-A--A--TGA---TGCAAAGAT-------T-----T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCG--TTCA-----ATAACGT-G-TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAAC--------AC-ACA----T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTAAG--TAAAAATTATTTTC-AATCCAC-----TTG-TTC---------------A-C---GA--GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-G------------G-T-----------CCATGCCCCTTTAGA
finalCons : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAATTATTTA-----GATATTT-----AA-TNAATA------AT-ATNATA---G-----TATTTGATTCGTGT-----AAAAC-GTAG-CAACAA-A-----CCTA-AATTTCAAATGACGCAAAGATT-----------------------------T-ATTTGAGACATCTAAACTTTTC--A-TTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATCATTTA--------TAACGTA--TGTTG--AAATGTTN--AACGC-T-----------T--TGA------CATA--C--TTTTTAAACGGC-N-TG-GT-------AGTCTTACCTC--CA----AT---------------AA----------GA------CAAACACGAT-------------T-TT-GG--GAGCCGGATT-TTA-TGTAAAT-ACAAA-GTATAT----CCCGTG----TAAAAATTATTTTC-AATCCAC-----TTGTTCCGAAA---------------------GA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-AA-TT-GT--C-AATTTC-------AA-TC-GATAGAAATGT----------------CCATGCCCCTTTAGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTTGTTTGTCTTAATCCTTAAATCGTTTTTATTGCAAAATATTGAATGCTTTTGAAGATATAGTACTTTTTCAGAATAATCTTAGTATTCCTCTCCCCACACATGGTCCTGCGCAGGTTATGAACACGTTGGATTAAAACAAGAGTTTGTTGTTATGCCCTGTGTAAAATAATCTTTATCACTTACTTATCGAAAGATCTTTATTCCTATGATGATAAATACTGTGCAATTTCA
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC
Unaligned ( gi|19 ): CTTTATTTCCAATACAAAAATAACTCAATTAATTTCAATCAATTAAAAATCATGTCCATGGCCCTTTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 11 111 11 11 1 1 1 1 11 22 1 22 1 1 11 22 33333 1 2222 11 3333333 33333 77777777777777 333 111 1 1 222 1 222 1 1 1 11 222 1 1 1 1 222 11 11 1 22 11 11 222 11 22 11 11 11 1 11 11111 111111 111111111 111111111 1111111 555555555555555555555555555555555555555555555 11 1 11 111 11 3333333333333333333333333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111 11111111 11111111111 111 6666666666666666666666666 1111111111111 1111 66666666666666666666
lowQualScore : 5 88 5 00 88 7 999 99 44 7 3 3 3 7 3 7 44 6 00 7 3 00 7 6 6 3 7 3 88 6 00 7 7 1 33333 3 7 8888 7 7 88 6666666 6 33333 7 11111111111111 888 3 7 7 777 6 3 2 555 3 7 333 7 3 3 3 7 44 555 3 7 3 6 7 7 7 3 6 6 3 555 33 33 3 00 6 6 88 7 44 7 6 0 7 333 7 7 88 00 99 7 44 7 7 6 888 7 6 33 0 99 00 66 11111 4 999999 44 6 4 888888888 4 1 999999999 6666666 55 3 3 99999 33 999999999999999999999999999999999999999999999 55 1 00 11 2 999999 4 0 3 11 8 7 6 777 22 88888 2 4 11 8888888888888888888888888 3 777 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7777 77 3 44 1 1 3 3 777777777777 3 3 3 3 33333333 7777 77777777777 444 0 3 33 0000000000000000000000000 3 555 6666666666666 3 3333 6 44 6666 77 77 3 99999999999999999999 3
lowQualScore : . .. . .. .. . ... .. .. . . . . . . . .. . .. . . .. . . . . . . .. . .. . . . ..... . . .... . . .. ....... . ..... . .............. ... . . . ... . . . ... . . ... . . . . . .. ... . . . . . . . . . . . ... .. .. . .. . . .. . .. . . . . ... . . .. .. .. . .. . . . ... . . .. . .. .. .. ..... . ...... .. . . ......... . . ......... ....... .. . . ..... .. ............................................. .. . .. .. . ...... . . . .. . . . ... .. ..... . . .. ......................... . ... . ................................................................................................................................... .... .. . .. . . . . ............ . . . . ........ .... ........... ... . . .. ......................... . ... ............. . .... . .. .... .. .. . .................... .
lowQualScore : 5 55 5 77 33 3 000 33 77 3 3 3 3 3 3 3 77 7 77 3 3 77 3 7 7 3 3 3 33 7 77 3 3 0 33333 3 3 3333 3 3 33 7777777 7 33333 3 77777777777777 333 7 3 3 777 7 3 0 777 3 3 333 3 3 3 3 3 00 000 3 3 3 7 3 3 3 3 7 7 3 777 33 33 3 77 7 7 33 3 77 3 7 7 3 333 3 3 33 77 33 3 00 3 3 7 777 3 7 33 0 55 33 11 11111 4 111111 44 4 9 000000000 0 0 777777777 6666666 33 6 6 11111 77 111111111111111111111111111111111111111111111 55 6 66 44 0 222222 4 0 2 00 0 3 7 000 22 66666 4 4 88 3333333333333333333333333 7 111 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 00 3 66 4 2 3 3 111111111111 2 3 6 6 22222222 7777 33333333333 555 5 6 66 5555555555555555555555555 6 888 8888888888888 3 8888 7 66 1111 99 99 3 11111111111111111111 6
consensus : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTTAATTAAT--A------AT-ATNATA---G-----TATTTGATTCGTGTAAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C-A----A--A---TGA---TGCAAAGAT------T-----T--ATTTGAGACATCTAAACTTTTC--ATTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATC-GTT------C--AT-AAC--GTA-TGTTGAAATGTTG--AACGC-T-----------T--T----GA------CATA---C--TTTTT--AAACGG-C-T-TG-GT-------AGTCTTACCTC--CA----AT---------------A--------A----------GA------CAAA----CACG-ATTTT-GG--GAGCCGGATT-TTA-TG------------TAAAT-ACAA-A-GT--------ATAT----CCT-----G-T--GTAAAAATTATTTTC-AATCCACTTATT---C--C--------------G-AAAGA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-A--A-T--T--GT--C-AATTTCAATC-GAT--AGAA---A---T-GT-CCATGCCCCTTTAGA
Reference ( family-1612 ) : ACACTACAACTAATTAAAAATTTTATTTCAGATAAATGTACTATTCAAATA-TTTATGT--ATTAAAATTCCATG-TGTAAACGATTAGATGCAATTAA-CA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAAAGTAATCATCCTAG-ATAAAC-TTTT-AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAAATNACTGGGA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATTTCTC--ACTTCTG----C--ATACCAAGAAG-----CTTTGGTTTA--C-----------CCCTCC--TTGGGTTACCCCTACCCTAAGCC-A-ATCCCTCT-CAAGGCTGCATATAATACTA--TATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATTATT-AT-AT-AGCAATGCATATGCTAG--TATTGGATTTAATT-ACTCATTTAA-ATTTTCCACAATACAAAGATTAAAATCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGTCCCACA--CTTACTAGTACATGTACTTAAGAACTTCGTTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACG-AAATCTAATTATTC-GTTTTTGTCTGTCCAGTTCCCCGTTTGTGGTCATGGATTTAAG-AAAGGCACATCG-ACACGATTTTGGT--AC-----AA-AAAT-----TATTTAGATATTTAATNAAT--A------AT-ATNATA---G-----TATTTGATTCGTGTAAAAC-GTAG-CAACAA-A-----CCTA-AATTT----C-A----A--A---TGA---CGCAAAGAT------T-----T--ATTTGAGACATCTAAACTTTTC--ATTTTCAAAACAAGG--CACGAGCCCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--GCTTAAATTCCCT---A-AATTG-ATTTATC-ATT------T--AT-AAC--GTA-TGTTGAAATGTTN--AACGC-T-----------T--T----GA------CATA---C--TTTTT--AAACGG-C-N-TG-GT-------AGTCTTACCTC--CA----AT---------------A--------A----------GA------CAAA----CACG-ATTTT-GG--GAGCCGGATT-TTA-TG------------TAAAT-ACAA-A-GT--------ATAT----CCC-----G-T--GTAAAAATTATTTTC-AATCCACTTGTT---C--C--------------G-AAAGA-TTTTT---ATTTCTAT-A-----------A-CAA----AA-A--A-T--T--GT--C-AATTTCAATC-GAT--AGAA---A---T-GT-CCATGCCCCTTTAGA
gi|1 : ACACTACAACTAATTAAAAATTTTATTTCAG-TAAATGTACTATTCAAATA-TTTATGTTAGTTAAA--TTCATGGTGTAAACA--TAG-TGCAATTAA-CAAGTAATTTCTATTTTTATGCATCATCGTTTTAAAAAGTA-TCCTC-TAG--TAAACGTTTTGAAAACCACATTAATGTTGATAGGAAAAATATCTGACA-CAAACATGATAAATAATGGAAA--TGGCATCACATCCCTGACTGCACAGGCAAAATATCTGGGAACACCGTTACCCATATCTACTCTGAAACCTGGCATGTATGTTAATTCTTCAACTCCTGACACCGAATACCAAGAAAAACGCCTTTAATTTAAGCAGGAATTAATACCCTCCA-TTGAGTTACTCT--CCTTAAGCCCATATTCCTCTTCAAGGCTGCATTTAATACTACATATTGGCCAGTGTTT-ATTTAAGATTGTGGTCTGATATTATT-ATAAT-TGC-ATGC-TATGCTCGGATATTGGATTTAATT-ACTCATTTAA-AGTTT-CACAATAC--AGATTAAAATCAACAG-TGTTCAGTACATCCAGATTTATAATCTCAAAATTAAAGTA-GCTAACTT-GCAC-GC---TTATATTAGTCCCACATCTTTACT-GTACATGTAC-TAAG-ACTTCGATTCTGTTTCTGATTTAACACCTTTCATCTG-CAAGCAGATTAACG-AAATT--ATT-TTC-G--TTTGTCTGT-CAGTT-CCCG--TGTGGCCATGGATTTAAG-AAAGG-ACATCATACATGTTTTTGAT--AC-----AA-AAAT-----TAAGTGATTCTTTACCCAATTGAAC----AT-ATCATG---A-----TATT---TTC---TAAATC-ATAG-GCACAA-A-----CCTG-TATTTC---C-C----ATTA---TGAT--TGCAAA-AC------T-----T--ATTTGAGA-ATTTAAACTTTTTCAATTTAAAAAACTA----CAC-AGCTCTG-TTCTGGTTTCCAAGTTTTCTCAG-TTTTTTTTT-TC-TTGC--ACTTAAATT-CCT---A-AA-TG-ATTTATC-G-T------C--A--AAC--ATGCTATTGAAATG-TC--AACGC-TC----------T--T----G--------ATA---C--TTTTT--AAA--G-CTT-TG-GT-------AGATCTACCTC--CA----AT---------------A--------A----------GA------CAAA----CACACATATT-GGGTGAGCCAGCTC-TTG-TG------------T--AT-CCAA-A-AT--------ATGT----CCCAGAAGG-T---TAAAAATT-TTTTC--ATGCACTTGTT---C--A--------------C-AGAGA--TTTT---ATTTC-AC-A-----------A-CAA----AATA--A-T--T--GT--CAAATTTCAATT-GGT----------------T-CCATCCCCCTTTAGA
gi|10 : CCCT---C-AAGTG-ATTTGCC-TTT------A--AT-CA-----A-TGTTAAAACATTG--AATGT-T-----------TCTT----GG------CATA---A--TCTTG--GAATGA-A-A-TGTGTGCAACAAAG-CTTAT-TC--TA----GC---------------A--------T----------GATTA---CAAA----TACA-ATTTT-GG--GA-TTAAGTT-TAA-TG------------TAAAT-ATAA-A-GC--------ATAT----CCT-----G-T--ATTGAAA-TATTTTCAAATCCACTTTTT---C--TTAAAAAAAAAAAAAA-AAAGATTTTTT---TTTTCTAT-G-----------A-CAA----AG-A--C-A--G--GT--G-AATTTCAAACAAAT--GAAA---A--------CCATGCCCCTTTAtc
gi|11 : A------TAAA----AATG-ATATT-GG--GAGCCTGATT---A-TG------------TAAAT-ACAG-A-GT--------ATATATATCCT-----GAC--GTAAA---TAT-----AATCCACTTATT---T--TT-------------G-AAAGA-TTGTG---ATTTTTGT-A-----------A-CAA----AA-A--A-T--T--GT--C-AATTTCAAT--------------G---T-GT-CCATGTCCCTTTA
gi|12 : aaaatttctgttcttcgttcgaagatgtgttagaaatcttggtgtcaactctacactagttttctcactatggcaagcaagttaTTTT-TGTTTGT---CTTAA--TCCTT---A-AATCG---TT-----TT------T--AT----------TGC-AAAATATTG--AATGC-T-----------T--TTGAAGA------TATAGTAC--TTTTTCAGAATAATC-T-TA-GT-------ATTCCT--CTC--CC-------------------------------------------------CACA----CATG-GTCCT-GC--G--CAGG----TTA-TGAACACGTTGGATTAAA--ACAAGA-GTTTGTTGTTATGC----CCT-----G-T--GTAAAA-TAATCTTT-A--TCACTTACT---TATC--------------G-AAAGA-TCTTT---ATTCCTAT-G-----------A-TGA----TA-A--A-TACT--GTG-C-AATTTCAatcatacaggctaatgcatt
gi|14 : ----------GG------CAAA----CATG-ATTTC-AG--GAGCCAAAGT-TTA-TG------------AAAAT-ACAA-A-GT--------GCAT----CTT-----G-C--GTGAAA--TATCTTT-GATTCAC--------------------------------A-TT---------------------------A-CAA----AA-A--A-T--T--AT--C-AATTTCAATT-GATA-AGAA---ATTGT-GT-CCACGCCCTTTTGG
gi|15 : tttatatgaattttcaatactggctatgacaagtgtgttACGACTTTTGT--AC-----AA-AAAT------ATTTTGATATTCA-T---T--G------AT-ATAATA---G-----TATTTAATTCATGTAAAAC-ACAG-CTTCAA-T-----CCTG-AATTT----T-AAAACA--A---TGA---CACAAAGATA-----TACATAT--ATTTAAAACATTCAAA-----C--GTTTTCA----------CACGAACCCTG-ATAATGTTcctttaatggagacgggcatagatatttttattgca
gi|17 : gaaggaactagaagATTCGTGTTAAGC-ATAG-CAACAA-A-----TCTA-AATTT----C-A----A--AAACTGA---TGCAAAGAT------gtatgtcacgt
gi|18 : tgaaaacatgtcCATGATTTTGGT--AC-----AA-AAAC-----TATCTAAATATTTAATTCAT--G------AT-ATGATG---AATTGTTATTTAATTC--GCAGAAA-GCAA-CACCAA-A-----TCAA-AATTCAAAACAA----A--A---TGA---TACAAAAATA-----TA----T--ATTTGAGACGTCTAAGCTgtcaattctaatcgaaaaaaacaaaaccgtttcaagtcccttttgttcagcaatgggatatacatgtacactgtacatgt
gi|19 : TTT---ATTTCCAA-T-----------A-CAA----AA-ATAA-C--TCAAT--T-AATTTCAATC-AATTAAAAATC-A---T-GT-CCATGGCCCTTTA
gi|2 : cACACTACAACTAAT-AAAAATT--ATTTCAGATAAATGTACTATTCAAATAATTTATGT--ATTAAAATTCCATG-TGTAAAC-ATTAGA-GCAATTAAACA-GTAATT-CTATTTTTATGCATC-TCGTTTTAAAA-GTAATCATCCTAG-ATAAAC-TTT--AAAACCACATAAATGTTGATAGGAAAAAT-TCTGACAACAAACATGATAAATAA-GGAAA--CGGCATCACATCC-TGACTGCACAGGCAAA--TACTGACA-----GTTACCTAT-TCTACTCTAATACA----ATGTATGTTATT-CTC--ACTTCTG----C--ATACCAG--AG-----CCTTGGTTTA--C-----------CCCTCCCCTTGGTTTACCCCTACCCTAAGCC-A-ATCC-TCT-CAAGGCTGTATATAATACTA--TATTGGCCAGTGTTTTATTTAAGAT-GTGGT---ATATTATTTAT-ATTAGCAATGCATATGCTA---CATTGGATTTAATTTACTCATTTAA-ATTTTCCACAATACAAAGATTAAA-TCAA-AGCTGTTCAGT-CATCAAGA--TACTATCTCAAAATTAAAGTAG-CTAACTTG-CACAGCAATTCATATTAGTCC-ACA--CTTACTAGTACATGTACT-AAGAACTTCATTCCTGTTTCTGATTTAACACCTT---TCTGACAAGCAA--TAACGTAAAT-TAATTATTT-GTTTTTGTCTGTCAAGTTCC--GTTTGTGGTCATG-ATTTAAG-AAAGGCACATCA-ACATGATTTTGAT--AC-----AA-AAAT-----TAAGTAGATTTTTAATGAAC--A------AT-ATCATA---G-----TATTC--------TAAAAC-ATGG-CAACAA-A-----CCTG-TATTT----C-ATT--A--A---TGA---TGCAAAGAC------T-----T--ATTTGAGACATTTAAACTTTTC--ATTTAAAAAACACGA--CACAAGCTCTG-TTTATGTTT-CAAGTTTTCT--G-TTTTTTTCT-TCTTTGC--ACTTAAATTCCCT---A-AACTG-ATTTATCGATT------CA-AT-AAC--ATG-TATTGAAATGTTC--AACGC-T-----------T--T----GA------CATA---C--TTTTT--AAACAG-C-T-TG-GT-------AGTCTTACCTC--CA----AT---------------A--------A----------GA------CAAA----CACA-CATTT-GG--GAGCCAGATC-TTG-TG------------TATCC-ACAA-A-AT--------ATGT----CCC-----A-GAAGTAAAAATTATTTTC-AATGCACTTGTT---CA-C--------------G---AGA-TTTTT---ATTTCTAC-A-----------A-CAA----AA-A--A-T--T--GT--C-AATTTCAATT-G-----------------GT-CCATCCCCCTTTAGA
gi|3 : AAAT--TTTATGT--ATTAAAATTCCA----GTTAACGATTAGATGCA-TTAA-CA-GTAATT-CTATTTT-ATGCATC-TCGTTTTAAAAAGTAA-CATCCTAGGATAA-C-TTTT-AAA-CCACATAAAT-TTGATAG---AAAT-TCTGACAACAAACATGAAGAATAG-GCAAAGACG-CATCACATCC---AC-GCACAGGCAAAATCACTGGGG-----TTTACCTAT-TCTACTC-AATGCA----ATGTA-GTTATTTCTC--ACTTCTG----C--ATACCTAGAAG-----CTT-GGTTTA--C-----------CCCTT-------GTTACCCCTACCC-AAGCC-A-ATCCCTCT-CAAGGCTG-ATATAATACTA---ATTGGCCAGTGTTT-ATTTAAGATTGTGGT---ATATT-TT-AT-AT-AGCAATG-ATATGCTAG--TATTGGATTAAATT-AC-CATTTAAGATTTTCCACAATACAAAG-TTATAATCAA-AGCT--TCAGT-CATCAAGA---ACTATCTCAAAATTAAAGTAGGCTAACTTGGCAC-GCA-TTCATATTAGT-CCACA--CTTACTAGTACATGTACTTAAGAA-TTCATTCCTGTTTCTGA-TTAACACCTT---TC-GACCAGCAA--TAACG--AATCTAATAATTTGGTTTTTG-CTGTCCAAGTCTCCGTTT-TCGTCAT-GATTTAAGAAAAGGCCCATC--ACATGATTTTGAT--AC------A-AAAT-----TAAGT-GATTTTTAATGAAC--A------ATAATCA-A---G-----TATT--AC-----TAAAACTATGG-CAACAATA-----CCTGTCTTTT----C-ATT--A--A---TGA---T-CAAAGAC------T-----T--ATTTGAGACATTTAAACTTTTC--A-TTAAAAAACGACGACCACAAGCCCTGTTTTAT-TTT-CAA---TTCT--GTTTTTTTTCTGTCTTGGCCACCTTAAATTCCCT---ATAACTGAATTTATCGATT------CCAAT-AACATGTA-TGAT-AAGTGTTC---CCGC-T-----------T--T----GAC-----CATAAG-CG-TTTTT--AAACG------CG-GT-------AGTC-TACCTC--------AC---------------T--------A----------GA------CAAA----CAC--ACTTT-GG--GAGCCAGA-T-TTG-TG------------T--ATCACAA-ATAT--------ATGT----CCA-----GAA--GTAAAAATAATTTTC-AATGCACTTGTTTCAC--C--------------G---AGA-TTTTTCTAATTTCTATCA-----------A-CAAG---AA-A--A-T--T--GTCCC-AATTCCAA---GTT--GG-----C---T-GC-CAAT-CCCCTTTAGA
gi|4 : caagTGGTTAAA-----AA-AAAC-----TATTCAGATATTTCATTAGT--A------AT-ATAATACTAG-----TAATTGATCCTTGTAAAAA-ATAT-CAGCAA-A-----CCTA-AATTT----C-A----A--AAGCCGG---CGCACAGAT------G-----T--ATTTGAAACATCTAAAGTTTTC--ATTTTCACTACACGT--CAGGAACCCTG-TTTATGTTTACATGTTtca
gi|4 : TTTTCC--G-TTCTTT-CT-TCTTTGT--GTTTG--CTCCCT---A-AATTG-ATT-----GTT------T--ATTACC--GCA-TGTCAAAATGTTG--AATTC-TTCATAGAAATCT--T----GAAGTTCTCAT----C--TCTTC-------G-C-G-TG-GT-----------TT-CCTGG-CA----AT---------------G--------ACAGATGTGTTAA------TAAA----CACT-ATTCC-GG--GAACCGAGTT-TTA-TG------------TAAAT-ATAA-A-----------CCAT----TCT-----G-T--GTAAAAA-TATTTTC-AATCACCTTATT---CA-T--------------A-AAAGA-TCTTT---ATTTCTAT-A-----------ACCAA----AATA--ATT--T--GT--C-AATTTCAATC-GACG-AGAA---ATTGT-GT-TCACGCCCCTTTAacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacatttttccgttctttcttctttgtgtttgctccctaaattgattgtttattaccgcatgtcaaaatgttgaattcttcatagaaatcttgaagttctcatctcttcgcgtggtttcctggcaatgacagatgtgttaataaacactattccgggaaccgagttttatgtaaatataaaccattctgtgtaaaaatattttcaatcaccttattcataaaagatctttatttctataaccaaaataatttgtcaatttcaatcgacgagaaattgtgttcacgcccctttatgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tggttaaaaaaaactattcagatatttcattagtaatataatactagtaattgatccttgtaaaaaatatcagcaaacctaaatttcaaaagccggcgcacagatgtatttgaaacatctaaagttttcattttcactacacgtcaggaaccctgtttatgtttacatgttacgtcaatcaactatcggcgtgtcgtctgagttgacggcttcggtgggaaaagattacaacgtaagcgaacat-AAAGGAGCATGG-GCACAATTTTAGT--AC-----AATAAATAA---TATTT---TATTTAAGTAAT--G------TT-ATCAC-------------------CATG-GAAAC-ATAG-CAACAA-A-----TCTA-AATTT----------------------------------------------------GAGACATTTAAACTTTTC--ATTTTCAAAACAAGG--CAAGAGCCCCA-TTTATGTTT-tgtgtttaaaaatacaccagcaagttattgtttgtta
gi|5 : tATTCCCCCCAA-AATTG-ATCTATC-ATT------------AAC--GTA-TGTTGAAATGTTG--AATGC-T-----------T--T-----A------GAAA---C--TTCC-----AC-------TG-TT-------GGTTTCACAGC--TA----AT---------------ATGACAAGCATT--------GA------CAAA----CACA-ATTTT-GG--AAGCCAGAAT-TTA-TG------------TAAAT-ACAA-A-GT--------AGAA----TCT-----G-T--ATAAAAA-TATTTTT-AATCCATTTACTA--C--T--------------A-AAAGA-TCTTT---ATTTCTAT-ATCTATTTCTATA-TAAAAACAA-A--A-C--TG-GT--C-AATTTCAATC-AATC-AAAAACCA---C-GT-CCATGCCCCTTTAacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcattccccccaaaattgatctatcattaacgtatgttgaaatgttgaatgctttagaaacttccactgttggtttcacagctaatatgacaagcattgacaaacacaattttggaagccagaatttatgtaaatacaaagtagaatctgtataaaaatatttttaatccatttactactaaaagatctttatttctatatctatttctatataaaaacaaaactggtcaatttcaatcaatcaaaaaccacgtccatgcccctttaatcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : taaaggagcatgggcacaattttagtacaataaataatattttatttaagtaatgttatcaccatggaaacatagcaacaaatctaaatttgagacatttaaacttttcattttcaaaacaaggcaagagccccatttatgtttacatgtcacatgactcaactatcaatgtgtcaccaaagttgacagcctcttatattacgaaaaatatctgttcG-ACACGATTTGGGT--ACCCCCCAA-AAATACCAGTATTTAGATATTTAATTGAT--A------AT-ATGATA---G-----TACTTGATTTGTTTAAATC-GTAG-CAA-AA-A-----CCCA-AATTT----C-A----A--AAACTGA---TTCAAAGATGTAAAAT-----TTGATTTGAGGCATC-AAATCTTTCA-ATTTTCATAACAAGG--CATGAACCCTG-TGTATGTTT-atcttaagtttaatttattgcttggtatcatgtgcattttatcaaagatacagt
gi|6 : gcagTCTCT---A-AATTG-ATTAATC-ATTGATGCTT--GT-GAC--GTA-GCTTTGGATGTTCTCACCGC-TGC---------T--T----G-----------------TTTTT--AAATGG-C-CATG-AC-------AAGCGTGCT------------------------------------------------A------CAAA----CATT-ATTTTTGG--GAGCTGTATT-T-A-TG------------TAAAC-ACAC-A-GT--------ATAT----CCT-----G-T--GTAAACAGTATATGT-AATCCACTTA---------------------------------TTT---ATATCTAT-A-----------C-CAAG---AA-A--A-C--T--AT--C-AGTTTCTATC------AAAA---ATCGT-GT-TCATGCCCCTTTAtcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgctctctaaattgattaatcattgatgcttgtgacgtagctttggatgttctcaccgctgcttgtttttaaatggccatgacaagcgtgctacaaacattatttttgggagctgtatttatgtaaacacacagtatatcctgtgtaaacagtatatgtaatccacttatttatatctataccaagaaaactatcagtttctatcaaaaatcgtgttcatgcccctttaagtttattaacaagtgttaatattgctgcttt
gi|7 : gcaggacacgatttgggtaccccccaaaaataccagtatttagatatttaattgataatatgatagtacttgatttgtttaaatcgtagcaaaaacccaaatttcaaaaactgattcaaagatgtaaaatttgatttgaggcatcaaatctttcaattttcataacaaggcatgaaccctgtgtatgttttcatgtcacgtgactcaactatcagttgtcagattcagtgaaaagggcatttagaataaatgttcatgcTTGGATATTCAATGAAA--A------AC-AGTAAA---G-----TATTTGAT-CGTGTAAAAC-ATGG-CAGCAA-A-----C-------TT----C-A----A--A-------------AAG--------------T--ACTTAA---ATCTA-----TTC--ATTTCCAAAATTAGA--CTCGAGATTTG-TTTATGTTT-agtttattaacaagtgttaatattgctgcttt
gi|7 : gAAATTGTTT--G-TTCTTT-CT-TATTTGT--GCTTG--CTGTCT---C-AATTG-ATTCACC-AT-----------T-AAT--GTT-TGTCGATATATTG--AATGCTT-----------T--T----GA------AATA---CAATTTGG--AAAT---C-T-TG-TT-------GTTCTGACCTTTGCACGTGATTTCATGGCTATGATGA--------A----------GATGTTGACAAACAAACACG-ATTTT-GG--AAGACAAATT-TTA-TG------------TAAAT-acatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgaaattgtttgttctttcttatttgtgcttgctgtctcaattgattcaccattaatgtttgtcgatatattgaatgcttttgaaatacaatttggaaatcttgttgttctgacctttgcacgtgatttcatggctatgatgaagatgttgacaaacaaacacgattttggaagacaaattttatgtaaattgtgtataattatcctcattgac
gi|8 : gttggatattcaatgaaaaacagtaaagtatttgatcgtgtaaaacatggcagcaaacttcaaaaagtacttaaatctattcatttccaaaattagactcgagatttgtttatgtttacatatttcatgactcactaacagctgtcggattcggtcataaaatgattttacgacgG-ACATGATTTGGGT--GC-----AA-TAAT----------AGACATTTAATTGAT--ACATGTAAT-ATGATA---GACG--TATTTGATTTGTGTGCAAT-GTAGTCAACAA-AATTTATCTA-AATTT--------------A---TGAAACTGCAAAGAT------A-----T--ATTTGAGAAATCAAAACTTTGC--AATTTTAAAACAAGG--CACGAGCCCTG-TTTATTTTT-tgtgtataattatcctcattgac
gi|9 : aatgggagtgAAA----CATG-ATTTT-GA---AGCCGGATTATTAATA------------T---T-ACA----GT--------TTAT----CCT-----T-T--GTAAAAGT-ATTTTC-AATCCACATATT---T--T--------------GTAAACA-TTTTT---ATTTCTAT-A-----------C-CAA----AA-A--A-C--T--GT--C-ATTTTCAATC-GATC-AGAA---A---TCGTGCCATGCCCTTTAAGAacacatcatgtgattcagcatcaacatggtggtaaagttgactaaagcttttataacgaaaattcttttttctttgagtttgctcacgaaattgatttatcgtta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACTTGATACATCTAAATAATATCTAACCACAATTTATTAAGGATCTTTCTTTTTGATTAGACGTTACGTGACACAATTATCAAGACGACGTCAAGGGTAACAGCTTCTGTGAAAGAAATCTTTTACGATGAAAACTTCATATCTTTGTTGCTTGTGTATTCAACTTAAACTGATTTATCATTTACTTGTGTCAAAAATTTGAACATATAAATAGGCGAAGTT
Unaligned ( gi|16 ): TCATTATTCACTTGATATTGAATACCATGTTTTACGTTTACATGCCGCTTGACTCCACTGTCAGTTGACGGCTTTGGTGAAAAATGTTTTTACAAGGAAAATTTTTCTCTTTTTCTTCTTTGTGGTTGTTTTGTTCCCCACATAAACTTATCACC