lowQualScore : 1111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 4 111 1111111111111111111111111111111111111111111 333333333333333333 222 2222 111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 1 44444444 33 22222 333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222 111 111 1 6666666666666666666 33333 2222222 55555555555555555 11 444444444444444444 111 222 11 22 222 1 1 888888888888 1 33333333 11 222 1 7777777777777777777777777777777777777777777777777777777 333 1 1 22 22
lowQualScore : 22 3 0 0 8 444 0000000000000000000000000000000000000000000 8 1 666666666666666666 0 555 1111 8 111 33 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 6 6 5 5 77777777 11 4 4 88888 888 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 99999 7 2 3 111 111 0 0000000000000000000 66666 1 6666666 88888888888888888 11 8 8 0 8 555555555555555555 88 111 3 000 8 0 88 11 8 88 333 3 0 3 111111111111 5 8 33333333 6 88 6 333 3 8888888888888888888888888888888888888888888888888888888 666 3 3 00 00
lowQualScore : .. . . . . ... ........................................... . . .................. . ... .... . ... .. . ............................................................................................................................................................................................................................................................................................ . . . . . ........ .. . . ..... ... ............................................................................................................................................................................................................................................................................................... ..... . . . ... ... . ................... ..... . ....... ................. .. . . . . .................. .. ... . ... . . .. .. . .. ... . . . ............ . . ........ . .. . ... . ....................................................... ... . . .. ..
lowQualScore : 55 2 0 0 2 000 2222222222222222222222222222222222222222222 0 0 000000000000000000 8 000 8888 0 888 88 4 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 00000000 55 0 0 55555 000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 00000 3 5 2 000 000 0 2222222222222222222 55555 2 2222222 00000000000000000 00 0 0 8 0 444444444444444444 66 444 2 888 0 8 88 00 0 22 000 2 0 3 000000000000 0 3 33333333 7 33 7 333 3 0000000000000000000000000000000000000000000000000000000 777 3 3 00 00
consensus : NNNNNNTATAGCAGG-TAC-GAACATTTTCCC---AAA-------G-NTA-TTGAAGGAAA-----TT---AT-T--ACGAAAGTT-GCTTTT-TTATAT-AC-A-ATTT-GAATTTGTTT---TCAC-T-AAGTGT-TTTGC--AAAGGGAT-CGGATCAA-ATATC----GCAGTTT-TTCA----CTGTA---TGNCA-A---GAAATG-TAA---A---ACACTGG--AATAACCAGTC--ACTG-T-ATTAG-T-G-GTGTCTAGACTTGCACTCATT--GAA------AGCTGCC--CT-TAGTA-A--GG-TT-AGAAG-TTGAAATGNTCTAGTCTATAGACCCNTANTANCAGNAANTANGTACTGCTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCCCATAATATTAT-TCACANAANTTTTANAGTTTAGAGTTTTTNTGCGTTCCACTCTT----------TA----AAA-T--A-GT-CGAAAAGNTT-----GG-ATGAACTCTNCTTTTAGGGTAACATTNCTAATNACTNCTCCAATATGTNTNACATACCNATCGCAAACACTNTGGGTTTAATNACAATGATCAAATATGATTGATGTACCTGTAACAAAAGGNGNTTTTTATAGAGGGATTAGCAGCTTATTACATCCCCGCTTAAAATTTNAAGNATACGCTTTCAGANCTGTTTGANATAAACTGTTTCCTCTTGACCTTCAGTNAAANTTTCTCTATTGTTTT-CGG-GAGTTAAACCCAAATATTTGTA-T-GT-TTTAC-ACA---TTT-AT-A-TATCATTG-C--CGAGAT--A-AA-TGTTTC--CTTCA--TNAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTNACTTC-TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GGTAATAGAN-A-GTAAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTTT--TC-ATTATC-A---AGAG------TGA----CAGAGA---GAAAC-TA---C-ATCTA--AA-AT-ACTTG-GGAGT-TCATTTAT
Reference ( gi|2 ) : GTCAACTATAGCAGG-TAC-GAAC-TCTTCCC---AAA-------G-TT--TTGATGGAAC-----TT---AT-T--A--GAAGTT-GCTTTTCTTATATTAC-A-ATT--GAATTTGTTT---TCAC-T-TAGTGT-TTTGC--AAAGGGGT-CAGATCAA-ATATC----GCA-TTT-TTCA----CTTT----TGTCAGG---GAAAT--TAA---A---ACACTGG-CAATAACCAGTC--ACTGTTTATTAG-T-GCGTGTCTAGACTTGCACTTA-T--GAA------AGC-GCC--CT-TAGTATA--GG-T--AGAAG-TTG-A-TGTT----TCTAT-----CATAA--CCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAAT--TATATTACATTAATTTTATAATT-AG--TTTT-CTGCGTTCCACTCTT----------TA----ATA-T--A-GT-TAAAAAGGTG-----GG-AT---T-CTTCTTTTGGGGTAACATT----ATAA-TGCTCCAAT---TTTCACA-ACCC-TTACCG-CACTATGGGCTTCAT--CAATGATC-AATAT-----ATGTA-----AA--A----CGTTCTT-ATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATGTT---AGACTTGTT-GATATAA-TTGTTTCTT-TTG--CTTC-ACGAA-CTTTCC--ATTGTTTT-CGACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACA---TCT-AT-A-TATCATTAAC--CAAGAT--A-AT-TGTTTT--CTTCA--T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG-TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATTGGGTATTAGAT-A-GGACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTTT--TCTATAATC-A---AGAGT-----TGA----CAGAGA---TAAAC-TA---T-ATCT---AA-AT-ACTTG-GGAGT-GCATTTAT
gi|8 : TATAGCAGG-TAC-GAACATTTTCCC---AAA-------A-GT--TTGA--GAAA-----TT---AT-T--AC-GAAGTT-GCTTTT-TTATAT-AC-A-ATTT-GAATTTGTTT---TCAC-T-AAGTGT-TTTGC--AAAGGGA--CAGATC-A-ATAT-----GCAGCTT-TCCA----CTGTAGAATAATAGGAAAGAAATGATGA---AATGACAATGGATAATAAATAGTC--
gi|5 : ttgcaTATAGCAG--T-C-GAACATATTTCC---AAACCAAAAAG-ATAATTGAAG--ACGATTATT---AT-TCGA--AAAGTT-GTTTTTATTATATAAC-ATATTT-GAATTTGTTT---TCAC-TAAAGTGTATTTGC---AAGGGGT-CATATCAA-CTAT-----GCAGTTT-TTCA----C-------TGT---A---GAA----TAA---A---ATACTGG--AAT-ACC-GTC--ACTGCTTAAGAGATAGC---TCTAGACTTGCACTCT-T--G-A------AGT-CCC--ATATAGTATG--GA-TTAAGAAG-TTGAA-TAGT----TCTA------CGTAC--GCAAAAATTATGTATTGCtag
gi|7 : TATAACAGG-TAT-GGGCATTTTCCC---AAA-------A-GT--TTGAC--AAA-----TTGAGAT-G--C--AAAGTT-----------TAT-AC-A-ATTT-GAATTTGTTT---TCAC-T-AAGTGT-TTTGC--AAAGCAA--CGAATCAATATGTC----G---TTT-TTTA----C-------TGT---A---GAA----TAA---A---ATACTGG--AAT-ACCAGTC--ACTG---A-TAG-T-G-GTGT-TATACTTGCACTCATT--GAA------AGCTGCT--C--TAATAAAACGT-T--AGAAG-TT
gi|1 : ttgcaATAGCAGGATACCGAACATTTTCCCCCAAAA-------GATTA-TTGC--GAAA-----TT---ATAT--ACGAAAGTT-GCTTAT-TTA-ATCACCA-ATTTCGAATTTATTTATATTACAC-TATTGT-TTTGCATAAACGGATATGAATCA----ATCCCGAGTA-TGTGTTCGAGCGCTGTA---TAGCATC---TAGATA-TAATGCG---ACA-TAA-CAA-AACC-GTCCAAATGTT-----G-T-G-GCGTCATGACTTGCACTCACT--GAGCCCTTTGGC-CCC--CT-CAGTA----GG-TT-ACGAGCTTG-AATGTTCTAGTCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTAT-TTACAGAATTTTTAAAATTTAG--TTTTTCTGCGTTCCACTCTTATAAATATAATACATTATA-T--A-GT-GGAAGAGATTTTCCTGG-ATGAAC-CTACTTT----GTA-CATTTCTAATCACTCCTCCAATATGTGTCACATACCCATCACAAACATTATG--TTTAATTACAATGATC-AA-ATGATTGATGTA-----AACAA----CGTTTTTTATAG--AGATTAGCAGCTTATTACATCCCCACTTAAAATT-AAAGGATATGCTTTCAGAACTGTTTGAAATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGAGAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACC---TTC-AT-ATTATCATGGACCTCTAGAA--A-AA-TGTTCTCCCTTCT--TA-GTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACA-TAATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAAAATATATTAATTTTA-TGTTGTGAGAAATCTAAATT--TATTGGTTAATTGACGA-TGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTCATTATC-AAAGAGAG------TGA----CAGAAAACCGAAAC-TT---C-ATCTAGCAA-AT-ACTTGTGGAGT-TCA
gi|10 : ttgtcata---AAA-------G-TT----GGAGAAAT-----TT---AT-T--ACGAAAGTTTGCTTTT-TTATGATAA-G-AGT--GAA-TTGTTTGG-CGAC-T-AAGAGT-TTTGC--AGAAGGGA-CAGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|16 : ccgtgcatatgggaggcagtcggaagcattttccgcagaTGG--AATA-CCAGTC--ACTG----TTAG-T-G-GTGT-TAGCCTTGCACTCATT--GAA------AGCTGCC--
gi|15 : TC--ACTG---AT-AA-T-G-GTATCGAGACTTGCACTTA-TTGAAA------AGCTGCCCTCT-TAGCG-A--GGTT--AGAA
gi|14 : CCATA-T--TAT-TCACAT-AATTTTATAGTT-AGAGTTTT-G-GCGTTCCACTCTT----------TA----AAA-TTCATGTATCAAAAAGCG-----GG-A
gi|4 : GTGCCACTCTT----------TA----AAAAT--A--T-CAAAAAGTTT-----GATAT---TTCTTCTTTTAGGGTAACATTA---ATAA-TGCTCTAAT---TTTGACA-ATCA--TGCAA-CACTTTGGGTTTAATA-CAATGATCAAATAT-----ATGTACCTGTAA--AAAGGGGGTTTT-ATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATAC---------CTT------CA-AA-CTG-TTCCT-TTA--CTTCAATTAA-GTT---------TTTT-CT-CGAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAA-TATCATT-TC--CATGATAGA-AT-AGTTT-----------------ATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC-TATAAG-CCATTCAC-TACAG--CAA-TCAT
gi|3 : taGTTTT-CGA-GAGTTAAACCCAGAT--------T-GT-TT--------------A--A-TATCATTG-C--CGAGAT--A-AAATGTTTC--CTTCA--TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC-TAGACA-CCATTCAT-----------------GGAGAAT--ATTTAGTTTA-TGTTG-GAGA---------TCTGATTTGGTATTAGAA-A-GTAGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTTT--TC-ATTATC-T---AGGGTAACAATGA----CAGAGC---TACATGTA---TCATCT---AAGAT-ACTTG-GGAGG-TCATTTATacag
gi|9 : ACCCAAATATCTGTA-TTGT-TTTAC-ACA---TTTTAT-AATATCATTA-C--CAAGAT--AGAA-TGTTTC--CTTCA--TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TGTTTTT--------TTTT-AATATTGACTTC-TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAGAA--TATCTATTTTA-TGTTatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|6 : TTTC--CTTCAATTA-GTCTACCC--GAGTT-GTTGA-AA-TTAT-TACTT-----TTGTT--------TTTTTAATA-TGACTTC-TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT-TTTTATTGTTG-GAGATC-------T--GATT-GGTAATAGAT-ATGTAAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTTT--TC-ATTATCTA---AGAG------TGAGAAGAAGAGA---GAAAC-TAAATC-ATCTA--AA-ATAACTT--GGAGTCGCATTTA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 22222222 33333333 22 11111 1 1 111111 11 11 11 111111111 1111 99999999999999999999999999999999999999 11 444444 222222222 11111 11111 666666666666666666666666666 222 11 22222 22222 111 1 1 11 2222 1 1 1 2222 22 111 5555555555555 55555555555555 11 222 22222 333 2 333 11 2 000000000000000000000000000000 11 2 33 4444444444444444 333333 11 2222222 222 2222222222 2222 1 33333333333333333 11 111 1 555555555555 2 1 1111 11 111 1 111 1 22222 1 22222222 111 5555555 111 1 11 11
lowQualScore : 6 99 6 99 6 22222222 44444444 22 6 11111 6 6 3 6 3 77777 6 99 666666 6 55 88 1 0 33 888888888 7777 99999999999999999999999999999999999999 5 55 7 7 77 111111 6 99 6 6 777777777 33333 88888 8 88 444444444444444444444444444 1 1 1 1 0 6 111 2 88 99999 3 66666 666 5 2 5 88 1111 4 3 5 2 1 4 1 0 8888 99 111 5555555555555 6 44 1 33333333333333 1 11 7 888 88888 777 1 1 3 222 6 44 1 6 7 7 999999999999999999999999999999 00 6 3 6 0 00 88 1 77 8888888888888888 88 7 0 111111 99 1 1 5555555 666 3 0 333 8 8 8 11 8 0 7777777777 3333 4 8 88 99 6 4 7 99 6 6 6 88888888888888888 1 00 99 6 1 6 99 6 6 444 0 8 0 888888888888 0 0 4 1 1111 0 2 33 2 777 0 777 0 55555 0 22222222 0 777 3 0000000 777 0 22 00
lowQualScore : . .. . .. . ........ ........ .. . ..... . . . . . ..... . .. ...... . .. .. . . .. ......... .... ...................................... . .. . . .. ...... . .. . . ......... ..... ..... . .. ........................... . . . . . . ... . .. ..... . ..... ... . . . .. .... . . . . . . . . .... .. ... ............. . .. . .............. . .. . ... ..... ... . . . ... . .. . . . . .............................. .. . . . . .. .. . .. ................ .. . . ...... .. . . ....... ... . . ... . . . .. . . .......... .... . . .. .. . . . .. . . . ................. . .. .. . . . .. . . ... . . . ............ . . . . .... . . .. . ... . ... . ..... . ........ . ... . ....... ... . .. ..
lowQualScore : 7 22 7 22 7 55555555 88888888 33 7 00000 7 7 3 7 3 77777 7 22 222222 7 88 66 4 8 66 888888888 0000 66666666666666666666666666666666666666 0 88 3 3 99 333333 7 22 7 7 333333333 00000 22222 0 88 333333333333333333333333333 0 0 0 0 7 7 000 5 55 55555 0 55555 555 5 5 5 00 0000 0 0 0 0 0 0 0 7 3333 33 000 0000000000000 7 33 0 00000000000000 0 33 3 000 00000 333 0 0 7 333 7 77 0 7 0 3 777777777777777777777777777777 33 7 7 7 7 33 33 0 33 7777777777777777 00 3 7 000000 33 0 0 2222222 888 2 8 666 0 0 0 88 0 6 6666666666 4444 6 0 88 22 7 0 3 22 7 7 7 88888888888888888 7 77 22 7 0 7 22 7 7 888 8 0 0 555555555555 0 0 0 0 0000 8 5 88 5 555 0 555 0 00000 0 22222222 2 555 2 0000000 000 0 55 88
consensus : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGAAATTAT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAGTTGAA-TGTT-TAG-TCTAT-----CGTA--ACCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACATAA-TTTTATAATT-AGAGTTTT-CTGCGTTCCACTCTT-T-AAA-------------ATAGTNAAAAAGNTT-----GGAT-A-CTCTTCTTTTGGGGTAACATT--TAATNA-T-CTCCAAT---TTTCACA-ACCC--ATCGCAAACACTATGGGTTTAAT-ACAATGATCAAATAT-----ATGTA-----A--AAAA-G-G-TTTTTATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AGA-CTGTT-GA-ATAAATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTG-TTTTCGA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGA--CCAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACTA-AT----CATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
Reference ( family-1604 ) : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GNT-A-TTGAAGGAAATTAT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GNCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAGTTGAAATGNTCTAG-TCTATAGACCCNTANTANCAGNAANTANGTACTGCTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCCCATAATATTATTCACANAANTTTTANAGTTTAGAGTTTTTNTGCGTTCCACTCTT-T-AAA-------------ATAGTCGAAAAGNTT-----GGATGAACTCTNCTTTTAGGGTAACATTNCTAATNACTNCTCCAATATGTNTNACATACCN--ATCGCAAACACTNTGGGTTTAATNACAATGATCAAATATGATTGATGTACCTGTAACAAAAGGNGNTTTTTATAGAGGGATTAGCAGCTTATTACATCCCCGCTTAAAATTTNAAGNATACGCTTTCAGANCTGTTTGANATAAACTGTTTCCTCTTGACCTTCAGTNAAANTTTCTCTATTG-TTTTCGG-GAGTTAAACCCAAATATTTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTG---CCGAGATA-AA-TGT--TTCCTTCA-TNAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTNACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TAATAGANA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACTA-------CATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
gi|1 : ATAGCAGGATA--CCGAA--CAT-TTTCC----CCCAAAA--GATTA-TTGC--GAAATTATATA--CG-AAA-G-TTGCTTAT-TTA--ATCA-CCA-ATTTCGAATTTATTT--ATATT-ACACTATTGT-TTTGCATAAACGGATATGAATCAA--TCCCG-AGTATGTGTTCGAGCGCTGT---AT----AGCATCTAG-ATATAATG-CGACATA---ACA-------A-AACC-GTCCAAATGT----T-GTG-GCG--TCATGACTTGCACTCACTG-A--GCCCTTTGGCCCC--CT-CAGTA--G--G-TT-ACGAGCTTGAATGTTCTAG-TCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTATTTACAGAATTTTTAAAATTTAG--TTTTTCTGCGTTCCACTCTTAT-AAATATAATACATTATATAGTGGAAGAGATTTTCCTGGATGAAC-CTACTTT----GTA-CATTTCTAATCACTCCTCCAATATGTGTCACATACCC--ATCACAAACATTATG--TTTAATTACAATGATCAAAT--GATTGATGTA-----AACAA----CGTTTTTTATAGAG--ATTAGCAGCTTATTACATCCCCACTTAAAATT-AAAGGATATGCTTTCAGAACTGTTTGAAATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGAGAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACCTT---C-AT-ATTATCATGGACCTCTAGAAA-AA-TGTTCTCCCTTC--TTAGTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACAT--AATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAAAATATATTAATTTTA-TGTTGTGAGAAATCTAAATT--TATT-GGTTAATTGACG-ATGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTC-ATTATC-AAAGAGAG-TGA----CA--GAAAACCGAAACTT-------CATCTAGCAAAT-ACTTGTGGAGTT-CA
gi|10 : ttgtcataTATGGGAGG-CAGTC-GGAAGCAT-TTTCCG---C---AGA--AAA-G-TTGGAGAAATTTAT-TA--CG-AAA-GTTTGCTTTT-TTATGAT-A-A-G-A-GT-GAA-TTGTTTGGCGACT-A----AGAGT-TTTGCAG-AAGGGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|14 : ccgtgcaATATTATTCACATAA-TTTTATAGTT-AGAGTTTTG--GCGTTCCACTCTT-T-AAA-------------ATcaga
gi|15 : ccTC--ACTG---AT-AATG-GTA--TCGAGACTTGCACTTATTGAAAAGC----TG---CCCTCT-TAGCG-AG--G-TT-AGAAtcatgtatcaaaaagcggga
gi|16 : TGG--AATA-CCAGTC--ACTGT----TAGTG-GTG--T-TAGCCTTGCACTCATTG-AAAGC----TG---CC--
gi|2 : TATAGCAGG-TA--C-GAA--C-T-CTTCC----C---AAA--GTT---TTGATGGAACTTAT-TA-----GAA-G-TTGCTTTTCTTAT-ATTA-C-A-ATT--GAATTTGTTT--TCACT-T----AGTGT-TTTGCA--AAGGGGT-CAGATCAA-ATATCGCA-T---TTTTCA----CTTT----T----GTCA---GGGA---AAT--TAA---A---ACACTGGC-AATAACCAGTC--ACTGTTTATTAGTGCGTG--TCTAGACTTGCACTTAT-G-AAAGC-----G---CC--CT-TAGTATAG--G-T--AGAAGTTGA--TGTT-----TCTAT-----CATA--ACCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAATTATATT-ACATTAATTTTATAATT---AGTTTT-CTGCGTTCCACTCTT-T-AAT-------------ATAGTTAAAAAGGTG-----GGAT----TCTTCTTTTGGGGTAACATTA-TAATG----CTCCAAT---TTTCACA-ACCCTTACCGCA----CTATGGGCTTCAT--CAATGATCAA-TAT-----ATGTA---------AAACG---TTCTTATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATGTT---AGACTTGTT-GATATAA-TTGTTTCTT-TTG--CTTCA--CGAACTTTCC--ATTG-TTTTCGACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATC---T-AT-A-TATCATTAA--CCAAGATA-AT-TGT--TTTCTTCA-T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG--TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATTGGG-TATTAGATA-GG-ACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTCTATAATC-A---AGAGTTGA----CA--GAGA---TAAACTA-------TATCT---AAAT-ACTTG-GGAGTG-CATTTAT
gi|3 : gtcaacG-TTTTCGA-GAGTTAAACCCAGAT--------T-GT-TT--------------A--A-TATCATTG---CCGAGATA-AAATGT--TTCCTTCA-TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC--TAGACA-CCATTC----------------A-TGGAGAAT--ATTTAGTTTA-TGTTG-GAGA---------TCTGATTTGG-TATTAGAAA-GT-AGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTT---TTC-ATTATC-T---AGGG-TAA----CAATGACA---G-AGCTACATGTATCATCTA--AGAT-ACTTG-GGAGGT-CATTTAT
gi|4 : GTGCCACTCTT-TAAAA-------------ATA-TCAAAAAGTTT------GAT-ATTTCTTCTTTTAGGGTAACAT---TAATAA-TGCTCTAAT---TTTGACA-ATC---AT-GC-AACACTTTGGGTTTAAT-ACAATGATCAAATAT-----ATGTACCTGTA--AAAAGGGGG-TTTTATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATAC-CTT----------------CAAACTG-TTCCT-TTA--CTTCAATTAAGTTTTTTC---------TC---GAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAA-TATCATTT---CCATGATA-GA-------------A-T-AGTTTATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC--TATAAG-CCATTCAC-TACAG--CAA-TCA-Tatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|5 : taTATAGCAG--T---C-GAA--CATATTTCCAAACC---AAAAAGAT-AATTGAAGACGATTAT-TATTCG-AAAAG-TTGTTTTTATTAT-AT-AAC-ATATTT-GAATTTGTTT--TCACTAA----AGTGTATTTGC---AAGGGGT-CATATCAA-CTAT-GCAGT---TTTTCA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACC-GTC--ACTGC--TTAAGAG-ATAGCTCTAGACTTGCACTC-TTG-AAGTC---------CC--ATATAGTA-TG--GATTAAGAAGTTGAA------TAGTTCTA------CGTAC--GCAAAAATTATGTATTGCacag
gi|6 : T--TTCCTTCAATTAGTCTACCC--GAGTT-GTTGA-AA-TTAT-TACTTT-----TGTT--------TTTTTAATAT-GACTTC--TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT-TTTTATTGTTG-GAGATC-------T--GATT-GG-TAATAGATATGT-AAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTT---TTC-ATTATCTA---AGAG-TGAGAAGAA--GAGA---GAAACTAAAT----CATCTA--AAATAACTT--GGAGTCGCATTTA
gi|7 : TATAACAGG-TA--T-GGG--CAT-TTTCC----C---AAA--AGT---TTGAC--AAATTGA-GA--TGCAAA-G-TT----------T-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGCAA--CGAATCAATATGTC---GT---TTTTTA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACCAGTC--ACTG---A-TAGTG-GTG--T-TATACTTGCACTCATTG-AAAGC----TG---CT--C--TAATA-AAACG-TT-AGAAGTT
gi|8 : ttgcaTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--AGT---TTGA--GAAATTAT-TA--CG-AA--G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGA--CAGATC-A-ATAT-GCAGC---TTTCCA----CTGTAGAATAATAGGAA---AG-A---AATGATGA---AATGACAATGGATAATAAATAGTC--
gi|9 : ttgcaACCCAAATATCTGTA-TTGT-TTTAC-ACATT---TTAT-AATATCATTA---CCAAGATAGAA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TG-TTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAGAA--TATCTATTTTA-TGTTtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC
Alignments
lowQualScore : 22222222 33333333 222 11111 1 1 111111 11 11 11 111111111 1111 99999999999999999999999999999999999999 11 444444 222222222 11111 11111 1 3333333333333333333333 11 222 11 11 1 22222 1 1 1 11 1 1 1 1 1 222 33 1 77777777777777777777777 666666666666666 11 555555555555 222 1 222 22 1 1 11 4444444444444 1 11 1 11 1 55555555555555 1 11 11 22 22222 2222222222 11111 33333333333333333 111 1 555555555555 2 1 1111 11 111 1 111 1 22222 1 22222222 111 44444444 111 1 11 11
lowQualScore : 6 99 6 99 6 22222222 44444444 111 6 6 6 11111 6 6 3 6 3 77777 6 99 666666 6 55 88 1 0 33 888888888 7777 88888888888888888888888888888888888888 5 55 7 7 77 111111 6 99 6 6 777777777 33333 88888 8 88 0 9999999999999999999999 88 6 111 1 88 88 5 1 66666 1 5 5 1 5 88 5 5 1 1 5 2 3 7 333 00 6 0 55555555555555555555555 1 1 222222222222222 11 7 666666666666 333 3 555 6 22 6 3 7 7 3 88 5555555555555 7 6 3 6 0 88 7 1 0 2 88 3 55555555555555 3 88 99 1 7 00 33333 3 0 333 8 8 8 11 8 0 7777777777 99999 8 88 99 6 7 99 6 6 6 88888888888888888 1 99 99 6 1 6 99 6 6 444 0 8 0 888888888888 0 0 1 1 1111 0 2 33 2 777 0 777 0 55555 0 22222222 0 777 3 77777777 777 0 22 00
lowQualScore : . .. . .. . ........ ........ ... . . . ..... . . . . . ..... . .. ...... . .. .. . . .. ......... .... ...................................... . .. . . .. ...... . .. . . ......... ..... ..... . .. . ...................... .. . ... . .. .. . . ..... . . . . . .. . . . . . . . . ... .. . . ....................... . . ............... .. . ............ ... . ... . .. . . . . . .. ............. . . . . . .. . . . . .. . .............. . .. .. . . .. ..... . . ... . . . .. . . .......... ..... . .. .. . . .. . . . ................. . .. .. . . . .. . . ... . . . ............ . . . . .... . . .. . ... . ... . ..... . ........ . ... . ........ ... . .. ..
lowQualScore : 7 22 7 22 7 55555555 22222222 222 7 7 7 00000 7 7 3 7 3 77777 7 22 222222 7 88 66 4 8 66 888888888 0000 00000000000000000000000000000000000000 0 88 3 3 99 333333 7 22 7 7 333333333 00000 22222 0 88 0 7777777777777777777777 33 7 000 0 55 00 5 0 55555 0 5 5 0 5 00 0 5 0 0 0 0 3 3 333 33 7 0 88888888888888888888888 0 0 000000000000000 00 3 000000000000 333 3 000 7 77 7 3 3 3 3 33 7777777777777 3 7 3 7 7 33 3 0 7 0 33 3 33333333333333 3 33 33 0 3 77 22222 2 8 222 0 0 0 88 0 6 6666666666 88888 0 88 22 7 3 22 7 7 7 88888888888888888 7 88 22 7 0 7 22 7 7 888 8 0 0 555555555555 0 0 0 2 0000 8 5 88 5 555 0 555 0 00000 0 22222222 2 555 2 55555555 000 0 55 88
consensus : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACAT-AATTTTATAA---TTAG--TTTTCTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCC--ATCGCAA-CACTATGGGTTTAA-TACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTTATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-ACT-GTT--GA-ATAA-TTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
Reference ( family-1604 ) : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACAT-AATTTTATAA---TTAGAGTTTTCTGCGTTCCACTCTT-TAAA-------------A-T--A---GTNAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAT--CTCCAAT---TTTCACA-ACCC--ATCGCAAACACTATGGGTTTAA-TACAATGATCAAAT-AT--ATGTA-----AAAAA--GGTTTTTATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-ACT-GTT--GA-ATAAATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
gi|1 : ATAGCAGGATA--CCGAA--CAT-TTTCC----CCCAAAA--GATTA-TTGC-G-A-AATT-ATATA--CG-AAA-G-TTGCTTAT-TTA--ATCA-CCA-ATTTCGAATTTATTT--ATATT-ACACTATTGT-TTTGCATAAACGGATATGAATCAA--TCCCG-AGTATGTGTTCGAGCGCTGT---AT----AGCATCTAG-ATATAATG-CGACATA---ACA-------A-AACC-GTCCAAATGT----T-GTG-GCG--TCATGACTTGCACTCACTG-A--GCCCTTTGGCCCC--CT-CAGTA--G--G-TT-ACGAGCTTGAATGTTCTAG-TCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTATTTACAG-AATTTT-TAAAATTTAG-TTTTTCTGCGTTCCACTCTTATAAATATAATACATTATA-T--A---GTGGAAGAGATTTTCCTGGATGAAC--CTACTTT----GTA-CATT-TCTAATCACTCCTCCAATATGTGTCACATACCC--ATCACAAACATTAT--GTTTAATTACAATGATCAAATGATTGATGTA-----AACAA--CGTTTTT-TATAGAGATTAGCAGCTTATTACATCCCCACTTAAAA-TTAAAGGATATGCTTTCAGAACT-GTTTGAA-ATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGA-GAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACCTT---C-AT-ATTATCATGGACCTCTAGAAA-AA-TGTTCTCCCTTC--TTAGTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACAT--AATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAAAATATATTAATTTTA-TGTTGTGAGAAATCTAAATT--TATT-GGTTAATTGACG-ATGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTC-ATTATC-AAAGAGAG-TGA----CA--GAAAACCGAAACT--------TCATCTAGCAAAT-ACTTGTGGAGTT-CA
gi|10 : ttgtcataTATGGGAGG-CAGTC-GGAAGCAT-TTTCCG---C---AGA--AAA-G-TTGG-AGA-AATTTAT-TA--CG-AAA-GTTTGCTTTT-TTATGAT-A-A-G-A-GT-GAA-TTGTTTGGCGACT-A----AGAGT-TTTGCAG-AAGGGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|14 : ccgtgcaATATTATTCACAT-AATTTTATAG---TTAGAGTTTT-GGCGTTCCACTCTT-TAAA-------------A-TTCATGTATCAAAAAGcaga
gi|15 : ccTC--ACTG---AT-AATG-GTA--TCGAGACTTGCACTTATTGAAAAGC----TG---CCCTCT-TAGCG-AG--G-TT-AGAAcggga
gi|16 : TGG--AATA-CCAGTC--ACTGT----TAGTG-GTG--T-TAGCCTTGCACTCATTG-AAAGC----TG---CC--
gi|2 : TATAGCAGG-TA--C-GAA--C-T-CTTCC----C---AAA--GTT---TTGATGGA-ACTT-AT-TA-----GAA-G-TTGCTTTTCTTAT-ATTA-C-A-ATT--GAATTTGTTT--TCACT-T----AGTGT-TTTGCA--AAGGGGT-CAGATCAA-ATATCGCA-T---TTTTCA----CTTT----T----GTCA---GGGA---AAT--TAA---A---ACACTGGC-AATAACCAGTC--ACTGTTTATTAGTGCGTG--TCTAGACTTGCACTTAT-G-AAAGC-----G---CC--CT-TAGTATAG--G-T--AGAAG-TTGA-TGTT-T----CTATCA-----TAA--CCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAATTATATT-ACATTAATTTTATAA---TTAG--TTTTCTGCGTTCCACTCTT-TAAT-------------A-T--A---GTTAAAAAGGTG-----GGAT----T-CTTCTTTTGGGGTAACATTAT--AATG----CTCCAAT---TTTCACA-ACCCTTACCGCA----CTATGGGCTTCA-T-CAATGATCAA-T-AT--ATGTA-----AAAC----GTTCTTATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATG-TT--AG-ACTTGTT--GATATAA-TTGTTTCTT-TTG--CTTCA--CGAACTTTC-C-ATTGTTTTC--GACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATC---T-AT-A-TATCATTAAC--CAAGATA-AT-TGT--TTTCTTCA-T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG--TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATTGGG-TATTAGATA-GG-ACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTCTATAATC-A---AGAGTTGA----CA--GAGA---TAAACT-A-------TATCT---AAAT-ACTTG-GGAGTG-CATTTAT
gi|3 : gtcaacGTTTTC--GA-GAGTTAAACCCAGAT--------T-GT-TT--------------A--A-TATCATTG-C--CGAGATA-AAATGT--TTCCTTCA-TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC--TAGACA-CCATTC----------------A-TGGAGAAT--ATTTAGTTTA-TGTTG-GAGA---------TCTGATTTGG-TATTAGAAA-GT-AGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTT---TTC-ATTATC-T---AGGG-TAA----CAATGACA---G-AGCT-ACATGTATCATCTA--AGAT-ACTTG-GGAGGT-CATTTAT
gi|4 : GTGCCACTCTT-TAAA-------------AAT--A----TCAAAAAGTTT-----G-AT--ATTTCTTCTTTTAGGGTAACATT----AATAATG-CTCTAAT---TTTGACA-ATC---AT-GCAA-CACTTTGGGTTTAA-TACAATGATCAAAT-AT--ATGTACCTGTAAAAAGGGGGTTTTATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATACCTTC--AA-ACT-G----------------TTCCT-TTA--CTTCAATTAAGTTTTTTC--------TC-----GAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAA-TATCATTT-C--CATGATA-GA-------------A--TAGTTTATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC--TATAAG-CCATTCAC-TACAG--CAA-TCA-Tatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|5 : taTATAGCAG--T---C-GAA--CATATTTCCAAACC---AAAAAGAT-AATTGA-AGACGATT-AT-TATTCG-AAAAG-TTGTTTTTATTAT-AT-AAC-ATATTT-GAATTTGTTT--TCACTAA----AGTGTATTTGC---AAGGGGT-CATATCAA-CTAT-GCAGT---TTTTCA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACC-GTC--ACTGC--TTAAGAG-ATAGCTCTAGACTTGCACTC-TTG-AAGTC---------CC--ATATAGTA-TG--GATTAAGAAG-TTGAA-----TAGTTCTA-CG-----TAC--GCAAAAATTATGTATTGCacag
gi|6 : T--TTCCTTCAATTAGTCTACCC--GAGTT-GTTGA-AA-TTAT-TACTTT-----TGTT--------TTTTTAATAT-GACTTC--TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT-TTTTATTGTTG-GAGATC-------T--GATT-GG-TAATAGATATGT-AAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTT---TTC-ATTATCTA---AGAG-TGAGAAGAA--GAGA---GAAACTAA-----ATCATCTA--AAATAACTT--GGAGTCGCATTTA
gi|7 : TATAACAGG-TA--T-GGG--CAT-TTTCC----C---AAA--AGT---TTGA-C-A-AATT-GA-GA--TGCAAA-G-TT----------T-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGCAA--CGAATCAATATGTC---GT---TTTTTA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACCAGTC--ACTG---A-TAGTG-GTG--T-TATACTTGCACTCATTG-AAAGC----TG---CT--C--TAATA-AAACG-TT-AGAAG-TT
gi|8 : ttgcaTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--AGT---TTGA-G-A-AATT-AT-TA--CG-AA--G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGA--CAGATC-A-ATAT-GCAGC---TTTCCA----CTGTAGAATAATAGGAA---AG-A---AATGATGA---AATGACAATGGATAATAAATAGTC--
gi|9 : ttgcaACCCAAATATCTGTA-TTGT-TTTAC-ACATT---TTAT-AATATCATT-AC--CAAGATAGAA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TG-TTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAGAA--TATCTATTTTA-TGTTtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC
Alignments
lowQualScore : 22222222 33333333 222 11111 1 1 111111 11 11 11 111111111 1111 99999999999999999999999999999999999999 11 444444 222222222 11111 11111 1 3333333333333333333333 11 222 11 11 1 22222 1 1 1 11 1 1 1 1 1 222 1 1 1 77777777777777777777777 666666666666666 11 555555555555 222 1 11111 1 22 1 11 44444444444444 1 11 1 11 1 11 1 1 5555555555 1 11 11 22 22222 2222222222 11111 33333333333333333 111 1 555555555555 2 1 1111 11 111 1 111 1 22222 1 22222222 111 44444444 111 1 11 11
lowQualScore : 6 99 6 99 6 22222222 44444444 111 6 6 6 11111 6 6 3 6 3 77777 6 99 666666 6 55 88 1 0 33 888888888 7777 88888888888888888888888888888888888888 5 55 7 7 77 111111 6 99 6 6 777777777 33333 88888 8 88 0 9999999999999999999999 88 6 111 1 88 88 5 1 66666 1 5 5 1 5 88 5 5 1 1 5 2 3 7 333 3 3 0 55555555555555555555555 0 1 222222222222222 11 7 555555555555 333 3 77777 3 6 00 7 3 88 88888888888888 3 00 6 3 6 0 88 7 1 0 2 88 3 3 2222222222 3 88 99 1 7 00 33333 3 0 333 8 8 8 11 8 0 7777777777 99999 8 88 99 6 7 99 6 6 6 88888888888888888 1 99 99 6 1 6 99 6 6 444 0 8 0 888888888888 0 0 1 1 1111 0 2 33 2 777 0 777 0 55555 0 22222222 0 777 3 77777777 777 0 22 00
lowQualScore : . .. . .. . ........ ........ ... . . . ..... . . . . . ..... . .. ...... . .. .. . . .. ......... .... ...................................... . .. . . .. ...... . .. . . ......... ..... ..... . .. . ...................... .. . ... . .. .. . . ..... . . . . . .. . . . . . . . . ... . . . ....................... . . ............... .. . ............ ... . ..... . . .. . . .. .............. . .. . . . . .. . . . . .. . . .......... . .. .. . . .. ..... . . ... . . . .. . . .......... ..... . .. .. . . .. . . . ................. . .. .. . . . .. . . ... . . . ............ . . . . .... . . .. . ... . ... . ..... . ........ . ... . ........ ... . .. ..
lowQualScore : 7 22 7 22 7 55555555 22222222 222 7 7 7 00000 7 7 3 7 3 77777 7 22 222222 7 88 66 4 8 66 888888888 0000 00000000000000000000000000000000000000 0 88 3 3 99 333333 7 22 7 7 333333333 00000 22222 0 88 0 7777777777777777777777 33 7 000 0 55 00 5 0 55555 0 5 5 0 5 00 0 5 0 0 0 0 3 3 333 3 3 0 88888888888888888888888 2 0 000000000000000 00 3 777777777777 333 3 77777 3 7 77 3 3 33 33333333333333 3 33 7 3 7 7 33 3 0 7 0 33 3 3 0000000000 3 33 33 0 3 77 22222 2 8 222 0 0 0 88 0 6 6666666666 88888 0 88 22 7 3 22 7 7 7 88888888888888888 7 88 22 7 0 7 22 7 7 888 8 0 0 555555555555 0 0 0 2 0000 8 5 88 5 555 0 555 0 00000 0 22222222 2 555 2 55555555 000 0 55 88
consensus : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
Reference ( family-1604 ) : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
gi|1 : ATAGCAGGATA--CCGAA--CAT-TTTCC----CCCAAAA--GATTA-TTGC-G-A-AATT-ATATA--CG-AAA-G-TTGCTTAT-TTA--ATCA-CCA-ATTTCGAATTTATTT--ATATT-ACACTATTGT-TTTGCATAAACGGATATGAATCAA--TCCCG-AGTATGTGTTCGAGCGCTGT---AT----AGCATCTAG-ATATAATG-CGACATA---ACA-------A-AACC-GTCCAAATGT----T-GTG-GCG--TCATGACTTGCACTCACTG-A--GCCCTTTGGCCCC--CT-CAGTA--G--G-TT-ACGAGCTTGAATGTTCTAG-TCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTATTTACA-GAATTTT-TAAAATTTAG-TTTTTCTGCGTTCCACTCTTATAAATATAATACATTATA-T--A---GTGGAAGAGATTTTCCTGGATGAAC--CTACTTT----GTA-CATT-TCTAATCACTCCTCCAATATGTGTCACATACCCATCACAAACATTATG--TTTAATTACAATGATCAAATGATTGATGTA-----AACAAC--GTTTTTTATAGAG--ATTAGCAGCTTATTACATCCCCACTTAAAA-TTAAAGGATATGCTTTCAGAAC-TGTTTGAA-ATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGA-GAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACCTT---C-AT-ATTATCATGGACCTCTAGAAA-AA-TGTTCTCCCTTC--TTAGTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACAT--AATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAAAATATATTAATTTTA-TGTTGTGAGAAATCTAAATT--TATT-GGTTAATTGACG-ATGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTC-ATTATC-AAAGAGAG-TGA----CA--GAAAACCGAAACT--------TCATCTAGCAAAT-ACTTGTGGAGTT-CA
gi|10 : ttgtcataTATGGGAGG-CAGTC-GGAAGCAT-TTTCCG---C---AGA--AAA-G-TTGG-AGA-AATTTAT-TA--CG-AAA-GTTTGCTTTT-TTATGAT-A-A-G-A-GT-GAA-TTGTTTGGCGACT-A----AGAGT-TTTGCAG-AAGGGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|14 : ccgtgcaATATTATTCACA-TAATTTTATAG---TTAGAGTTT-TGGCGTTCCACTCTT-TAAA-------------A-TTCATGTATCAAAAAGcaga
gi|15 : ccTC--ACTG---AT-AATG-GTA--TCGAGACTTGCACTTATTGAAAAGC----TG---CCCTCT-TAGCG-AG--G-TT-AGAAcggga
gi|16 : TGG--AATA-CCAGTC--ACTGT----TAGTG-GTG--T-TAGCCTTGCACTCATTG-AAAGC----TG---CC--
gi|2 : TATAGCAGG-TA--C-GAA--C-T-CTTCC----C---AAA--GTT---TTGATGGA-ACTT-AT-TA-----GAA-G-TTGCTTTTCTTAT-ATTA-C-A-ATT--GAATTTGTTT--TCACT-T----AGTGT-TTTGCA--AAGGGGT-CAGATCAA-ATATCGCA-T---TTTTCA----CTTT----T----GTCA---GGGA---AAT--TAA---A---ACACTGGC-AATAACCAGTC--ACTGTTTATTAGTGCGTG--TCTAGACTTGCACTTAT-G-AAAGC-----G---CC--CT-TAGTATAG--G-T--AGAAG-TTGA-TGTT-T----CTATCA-----TAA--CCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAATTATATT-ACATTAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAT-------------A-T--A---GTTAAAAAGGTG-----GGAT----T-CTTCTTTTGGGGTAACATTAT--AATG----CTCCAAT---TTTCACA-ACCC-TTACCG-CACTATGGGCTTCAT--CAATGATC-AAT-AT--ATGT------AAAAC---GTTCTT-ATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATG-TT--AG-ACTTGTT--GATAT-AATTGTTTCTT-TTG--CTTCA--CGAACTTTC-C-ATTGTTTTC--GACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATC---T-AT-A-TATCATTAAC--CAAGATA-AT-TGT--TTTCTTCA-T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG--TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATTGGG-TATTAGATA-GG-ACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTCTATAATC-A---AGAGTTGA----CA--GAGA---TAAACT-A-------TATCT---AAAT-ACTTG-GGAGTG-CATTTAT
gi|3 : gtcaacGTTTTC--GA-GAGTTAAACCCAGAT--------T-GT-TT--------------A--A-TATCATTG-C--CGAGATA-AAATGT--TTCCTTCA-TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC--TAGACA-CCATTC----------------A-TGGAGAAT--ATTTAGTTTA-TGTTG-GAGA---------TCTGATTTGG-TATTAGAAA-GT-AGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTT---TTC-ATTATC-T---AGGG-TAA----CAATGACA---G-AGCT-ACATGTATCATCTA--AGAT-ACTTG-GGAGGT-CATTTAT
gi|4 : GTGCCACTCTT-TAAA-------------AAT--A----TCAAAAAGTTT-----G-AT--ATTTCTTCTTTTAGGGTAACATT----AATAATG-CTCTAAT---TTTGACA-ATC-AT-GCAA-CACTTTGGGTTTAAT-ACAATGATCAAAT-AT--ATGTACCTGTAAAAAGGGGGTTTT-ATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATACCTTC--AA-AC-TG----------------TTCCT-TTA--CTTCAATTAAGTTTTTTC--------TC-----GAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAA-TATCATTT-C--CATGATA-GA-------------A--TAGTTTATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC--TATAAG-CCATTCAC-TACAG--CAA-TCA-Tatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|5 : taTATAGCAG--T---C-GAA--CATATTTCCAAACC---AAAAAGAT-AATTGA-AGACGATT-AT-TATTCG-AAAAG-TTGTTTTTATTAT-AT-AAC-ATATTT-GAATTTGTTT--TCACTAA----AGTGTATTTGC---AAGGGGT-CATATCAA-CTAT-GCAGT---TTTTCA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACC-GTC--ACTGC--TTAAGAG-ATAGCTCTAGACTTGCACTC-TTG-AAGTC---------CC--ATATAGTA-TG--GATTAAGAAG-TTGAA-----TAGTTCTA-CG-----TAC--GCAAAAATTATGTATTGCacag
gi|6 : T--TTCCTTCAATTAGTCTACCC--GAGTT-GTTGA-AA-TTAT-TACTTT-----TGTT--------TTTTTAATAT-GACTTC--TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT-TTTTATTGTTG-GAGATC-------T--GATT-GG-TAATAGATATGT-AAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTT---TTC-ATTATCTA---AGAG-TGAGAAGAA--GAGA---GAAACTAA-----ATCATCTA--AAATAACTT--GGAGTCGCATTTA
gi|7 : TATAACAGG-TA--T-GGG--CAT-TTTCC----C---AAA--AGT---TTGA-C-A-AATT-GA-GA--TGCAAA-G-TT----------T-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGCAA--CGAATCAATATGTC---GT---TTTTTA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACCAGTC--ACTG---A-TAGTG-GTG--T-TATACTTGCACTCATTG-AAAGC----TG---CT--C--TAATA-AAACG-TT-AGAAG-TT
gi|8 : ttgcaTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--AGT---TTGA-G-A-AATT-AT-TA--CG-AA--G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGA--CAGATC-A-ATAT-GCAGC---TTTCCA----CTGTAGAATAATAGGAA---AG-A---AATGATGA---AATGACAATGGATAATAAATAGTC--
gi|9 : ttgcaACCCAAATATCTGTA-TTGT-TTTAC-ACATT---TTAT-AATATCATT-AC--CAAGATAGAA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TG-TTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAGAA--TATCTATTTTA-TGTTtag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC
Alignments
lowQualScore : 22222222 33333333 222 11111 1 1 111111 11 11 11 111111111 1111 99999999999999999999999999999999999999 11 444444 222222222 11111 11111 1 3333333333333333333333 11 222 11 11 1 22222 1 1 1 11 1 1 1 1 1 222 1 1 1 77777777777777777777777 666666666666666 11 555555555555 222 1 11111 1 22 1 11 44444444444444 1 11 1 11 1 11 1 1 5555555555 1 11 11 22 22222 2222222222 11111 33333333333333333 111 1 555555555555 2 1 1111 11 111 1 111 1 22222 1 22222222 111 44444444 111 1 11 11
lowQualScore : 6 99 6 99 6 22222222 44444444 111 6 6 6 11111 6 6 3 6 3 77777 6 99 666666 6 55 88 1 0 33 888888888 7777 88888888888888888888888888888888888888 5 55 7 7 77 111111 6 99 6 6 777777777 33333 88888 8 88 0 9999999999999999999999 88 6 111 1 88 88 5 1 66666 1 5 5 1 5 88 5 5 1 1 5 2 3 7 333 3 3 0 55555555555555555555555 0 1 222222222222222 11 7 555555555555 333 3 77777 3 6 00 7 3 88 88888888888888 3 00 6 3 6 0 88 7 1 0 2 88 3 3 2222222222 3 88 99 1 7 00 33333 3 0 333 8 8 8 11 8 0 7777777777 99999 8 88 99 6 7 99 6 6 6 88888888888888888 1 99 99 6 1 6 99 6 6 444 0 8 0 888888888888 0 0 1 1 1111 0 2 33 2 777 0 777 0 55555 0 22222222 0 777 3 77777777 777 0 22 00
lowQualScore : . .. . .. . ........ ........ ... . . . ..... . . . . . ..... . .. ...... . .. .. . . .. ......... .... ...................................... . .. . . .. ...... . .. . . ......... ..... ..... . .. . ...................... .. . ... . .. .. . . ..... . . . . . .. . . . . . . . . ... . . . ....................... . . ............... .. . ............ ... . ..... . . .. . . .. .............. . .. . . . . .. . . . . .. . . .......... . .. .. . . .. ..... . . ... . . . .. . . .......... ..... . .. .. . . .. . . . ................. . .. .. . . . .. . . ... . . . ............ . . . . .... . . .. . ... . ... . ..... . ........ . ... . ........ ... . .. ..
lowQualScore : 7 22 7 22 7 55555555 22222222 222 7 7 7 00000 7 7 3 7 3 77777 7 22 222222 7 88 66 4 8 66 888888888 0000 00000000000000000000000000000000000000 0 88 3 3 99 333333 7 22 7 7 333333333 00000 22222 0 88 0 7777777777777777777777 33 7 000 0 55 00 5 0 55555 0 5 5 0 5 00 0 5 0 0 0 0 3 3 333 3 3 0 88888888888888888888888 2 0 000000000000000 00 3 777777777777 333 3 77777 3 7 77 3 3 33 33333333333333 3 33 7 3 7 7 33 3 0 7 0 33 3 3 0000000000 3 33 33 0 3 77 22222 2 8 222 0 0 0 88 0 6 6666666666 88888 0 88 22 7 3 22 7 7 7 88888888888888888 7 88 22 7 0 7 22 7 7 888 8 0 0 555555555555 0 0 0 2 0000 8 5 88 5 555 0 555 0 00000 0 22222222 2 555 2 55555555 000 0 55 88
consensus : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
Reference ( family-1604 ) : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
gi|1 : ATAGCAGGATA--CCGAA--CAT-TTTCC----CCCAAAA--GATTA-TTGC-G-A-AATT-ATATA--CG-AAA-G-TTGCTTAT-TTA--ATCA-CCA-ATTTCGAATTTATTT--ATATT-ACACTATTGT-TTTGCATAAACGGATATGAATCAA--TCCCG-AGTATGTGTTCGAGCGCTGT---AT----AGCATCTAG-ATATAATG-CGACATA---ACA-------A-AACC-GTCCAAATGT----T-GTG-GCG--TCATGACTTGCACTCACTG-A--GCCCTTTGGCCCC--CT-CAGTA--G--G-TT-ACGAGCTTGAATGTTCTAG-TCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTATTTACA-GAATTTT-TAAAATTTAG-TTTTTCTGCGTTCCACTCTTATAAATATAATACATTATA-T--A---GTGGAAGAGATTTTCCTGGATGAAC--CTACTTT----GTA-CATT-TCTAATCACTCCTCCAATATGTGTCACATACCCATCACAAACATTATG--TTTAATTACAATGATCAAATGATTGATGTA-----AACAAC--GTTTTTTATAGAG--ATTAGCAGCTTATTACATCCCCACTTAAAA-TTAAAGGATATGCTTTCAGAAC-TGTTTGAA-ATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGA-GAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACCTT---C-AT-ATTATCATGGACCTCTAGAAA-AA-TGTTCTCCCTTC--TTAGTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACAT--AATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAAAATATATTAATTTTA-TGTTGTGAGAAATCTAAATT--TATT-GGTTAATTGACG-ATGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTC-ATTATC-AAAGAGAG-TGA----CA--GAAAACCGAAACT--------TCATCTAGCAAAT-ACTTGTGGAGTT-CA
gi|10 : ttgtcataTATGGGAGG-CAGTC-GGAAGCAT-TTTCCG---C---AGA--AAA-G-TTGG-AGA-AATTTAT-TA--CG-AAA-GTTTGCTTTT-TTATGAT-A-A-G-A-GT-GAA-TTGTTTGGCGACT-A----AGAGT-TTTGCAG-AAGGGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|14 : ccgtgcaATATTATTCACA-TAATTTTATAG---TTAGAGTTT-TGGCGTTCCACTCTT-TAAA-------------A-TTCATGTATCAAAAAGcaga
gi|15 : ccTC--ACTG---AT-AATG-GTA--TCGAGACTTGCACTTATTGAAAAGC----TG---CCCTCT-TAGCG-AG--G-TT-AGAAcggga
gi|16 : TGG--AATA-CCAGTC--ACTGT----TAGTG-GTG--T-TAGCCTTGCACTCATTG-AAAGC----TG---CC--
gi|2 : TATAGCAGG-TA--C-GAA--C-T-CTTCC----C---AAA--GTT---TTGATGGA-ACTT-AT-TA-----GAA-G-TTGCTTTTCTTAT-ATTA-C-A-ATT--GAATTTGTTT--TCACT-T----AGTGT-TTTGCA--AAGGGGT-CAGATCAA-ATATCGCA-T---TTTTCA----CTTT----T----GTCA---GGGA---AAT--TAA---A---ACACTGGC-AATAACCAGTC--ACTGTTTATTAGTGCGTG--TCTAGACTTGCACTTAT-G-AAAGC-----G---CC--CT-TAGTATAG--G-T--AGAAG-TTGA-TGTT-T----CTATCA-----TAA--CCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAATTATATT-ACATTAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAT-------------A-T--A---GTTAAAAAGGTG-----GGAT----T-CTTCTTTTGGGGTAACATTAT--AATG----CTCCAAT---TTTCACA-ACCC-TTACCG-CACTATGGGCTTCAT--CAATGATC-AAT-AT--ATGT------AAAAC---GTTCTT-ATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATG-TT--AG-ACTTGTT--GATAT-AATTGTTTCTT-TTG--CTTCA--CGAACTTTC-C-ATTGTTTTC--GACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATC---T-AT-A-TATCATTAAC--CAAGATA-AT-TGT--TTTCTTCA-T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG--TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATTGGG-TATTAGATA-GG-ACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTCTATAATC-A---AGAGTTGA----CA--GAGA---TAAACT-A-------TATCT---AAAT-ACTTG-GGAGTG-CATTTAT
gi|3 : gtcaacGTTTTC--GA-GAGTTAAACCCAGAT--------T-GT-TT--------------A--A-TATCATTG-C--CGAGATA-AAATGT--TTCCTTCA-TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC--TAGACA-CCATTC----------------A-TGGAGAAT--ATTTAGTTTA-TGTTG-GAGA---------TCTGATTTGG-TATTAGAAA-GT-AGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTT---TTC-ATTATC-T---AGGG-TAA----CAATGACA---G-AGCT-ACATGTATCATCTA--AGAT-ACTTG-GGAGGT-CATTTAT
gi|4 : GTGCCACTCTT-TAAA-------------AAT--A----TCAAAAAGTTT-----G-AT--ATTTCTTCTTTTAGGGTAACATT----AATAATG-CTCTAAT---TTTGACA-ATC-AT-GCAA-CACTTTGGGTTTAAT-ACAATGATCAAAT-AT--ATGTACCTGTAAAAAGGGGGTTTT-ATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATACCTTC--AA-AC-TG----------------TTCCT-TTA--CTTCAATTAAGTTTTTTC--------TC-----GAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAA-TATCATTT-C--CATGATA-GA-------------A--TAGTTTATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC--TATAAG-CCATTCAC-TACAG--CAA-TCA-Tatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|5 : taTATAGCAG--T---C-GAA--CATATTTCCAAACC---AAAAAGAT-AATTGA-AGACGATT-AT-TATTCG-AAAAG-TTGTTTTTATTAT-AT-AAC-ATATTT-GAATTTGTTT--TCACTAA----AGTGTATTTGC---AAGGGGT-CATATCAA-CTAT-GCAGT---TTTTCA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACC-GTC--ACTGC--TTAAGAG-ATAGCTCTAGACTTGCACTC-TTG-AAGTC---------CC--ATATAGTA-TG--GATTAAGAAG-TTGAA-----TAGTTCTA-CG-----TAC--GCAAAAATTATGTATTGCacag
gi|6 : T--TTCCTTCAATTAGTCTACCC--GAGTT-GTTGA-AA-TTAT-TACTTT-----TGTT--------TTTTTAATAT-GACTTC--TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT-TTTTATTGTTG-GAGATC-------T--GATT-GG-TAATAGATATGT-AAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTT---TTC-ATTATCTA---AGAG-TGAGAAGAA--GAGA---GAAACTAA-----ATCATCTA--AAATAACTT--GGAGTCGCATTTA
gi|7 : TATAACAGG-TA--T-GGG--CAT-TTTCC----C---AAA--AGT---TTGA-C-A-AATT-GA-GA--TGCAAA-G-TT----------T-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGCAA--CGAATCAATATGTC---GT---TTTTTA----CTGT----------------AG-A---A----TAA---A---ATACTGG--AAT-ACCAGTC--ACTG---A-TAGTG-GTG--T-TATACTTGCACTCATTG-AAAGC----TG---CT--C--TAATA-AAACG-TT-AGAAG-TT
gi|8 : ttgcaTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--AGT---TTGA-G-A-AATT-AT-TA--CG-AA--G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGA--CAGATC-A-ATAT-GCAGC---TTTCCA----CTGTAGAATAATAGGAA---AG-A---AATGATGA---AATGACAATGGATAATAAATAGTC--
gi|9 : ttgcaACCCAAATATCTGTA-TTGT-TTTAC-ACATT---TTAT-AATATCATT-AC--CAAGATAGAA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TG-TTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAGAA--TATCTATTTTA-TGTTtag
blockSeqs : . GT . AG A AAACC AAGATAA TGG C T . TTCG A T C G T ACAT . GG AA A G T G TA CGCAT . AGAATAATAGGAAAGAAATGATGAAATG C AT A A . TTTATT C GC C A TG CTCT AAAC A TA . TGTTTCTATCA . G . C . CA A G . C . . C . . G T A G C C T A . A . . ATTCATGTA G GATATTT TG A AATAATG . . CTTA . G A A . . ACCTGTAAAAAGGG . GG G . C . T G T . . T TTGATAT . . AA C T A GAC A ATC C T . TA . TTCTATAA AAC G AT . A T . . . . TGAGTTTTTGGGGTGGG T TG . . G . . . T TT T . TCT G . T T TGT C . C . . . T TA T GAAGAA . A ACATGTA A A G CG
blockSeqs : . . . . . GC AAAG AG . . . TGC . . A . . AG . . A . . T T A GCAGT . TGTCAGGGAAATTAAA C C A A . CTTA . . C . TG ATA TAG . T . ATAGTTCTACG . G . . A . . . . ATAG T GGATT TA A ATAATG . . ATG . G . . . . AAAAC . GA . . . . T T . . . . . . . A T . . GA A ATT . . . TT . TTATAA GC . T . . T . . . . AGTTTTT T TT . . A . . . . AT . . TCT T . T A GG C . C . . . . A . CAAT . A AAA A . G G
blockSeqs : . . . . . C GTT AG . . . CG . . . . . CA . . T . . . A C GCAGC . AGAATAAA C . A A . AT . . C . TG CT AG . T . . AATA . . ATC . . . TA . TATA TC . T . . T . . . . TGTTTT T TT . . G . . . . T . . T . . A T GT C . . . . . . T . CA . . A . . . T
blockSeqs : . . . . . C AGT C . . . CG . . . . . CA . . A . . . G A CGT . AGAATAAA A . . A . TT . . . . G C TG . . . . . . . . AA AC . . . . T . . . . TGTT T TG . . G . . . . T .
blockSeqs : . . . . . C AGT G . . . . . . . . . CA . . A . . . . . . AT . . . . . . . . . . . . ATT . G . . . . . . .
blockSeqs : .
blockSeqCons : C******* AGT***** CA*** A***** ** ** A* GCAGT**** **** AGAATAAA****************************** ** TG******* CT*** AG*** TATAA***** NC*** ** ** AGTTTTT********** TN ** ** T**
originalCons : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C---AAA--GAT-A-TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACT-A----AGTGT-TTTGCA--AAGGGAT-CGGATCAA-ATATCGCAGT---TTTTCA----CTGT---AT----GGCA---AG-A---AATG-TAA---A---ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-AT-A-TATCATTGAC--CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT-TATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
finalCons : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCCC-------AAAAGT-----TTGA-GGA-AATT-AT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-ACA---ATTT-GAATTTGTTT--TCACTA-----AGTGT-TTTGCA--AAGGGA--CGGATCAAA-TATGCAGT----TTTTCA----CTGTAGAATAAA------------------------------ACACTGG--AATAACCAGTC--ACTGT--ATTAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGCTG-------CCCT---TAGTAAG---G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATTTATAA-----TATCATTNC---CAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTTAGTTTTT----------TTTTTAATATTNACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAGAAT--ATCTATTTTA-TGTTG-GAGA---------T--GATT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC
Alignments
lowQualScore : 2222 11111 111111 11111 1 1 1111 11 22222222 111 111 2222 1 11 555555555 222222222 11111 11111 1 3333333333333333333333 11 222 11 11 1 22222 1 1 1 11 1 1 1 1 1 222 1 1 1 77777777777777777777777 666666666666666 11 555555555555 222 1 11111 1 22 1 11 44444444444444 1 11 1 11 1 11 1 1 5555555555 1 11 11 22 22222 22222 111111 333333333333333333 111 1 666666666 1 1 1 1111 11 111 1 111 1 22222 1 22222222 111 44444444 111 1 11 11
lowQualScore : 6 99 6 99 6 0000 99999 33333 999999 6 6 11111 6 6 3 6 3 77777 6 99 4444 6 6 55 6 999 44444444 8 5 8 444 444 8888 0 2 8 8 8 11 0 000000000 6 99 6 6 777777777 33333 88888 8 88 0 9999999999999999999999 88 6 111 1 88 88 5 1 66666 1 5 5 1 5 88 5 5 1 1 5 2 3 7 333 3 3 0 55555555555555555555555 0 1 222222222222222 11 7 555555555555 333 3 77777 3 6 00 7 3 88 88888888888888 3 00 6 3 6 0 88 7 1 0 2 88 3 3 2222222222 3 88 99 1 7 00 33333 3 0 333 8 8 8 11 8 0 00000 0 777777 8 88 99 6 7 99 6 6 6 333333333333333333 1 3 99 6 6 99 6 6 8 8 111 8 0 777777777 0 0 0 1 1 1111 0 2 33 2 777 0 777 0 55555 0 22222222 0 777 3 77777777 777 0 22 00
lowQualScore : . .. . .. . .... ..... ..... ...... . . ..... . . . . . ..... . .. .... . . .. . ... ........ . . . ... ... .... . . . . . .. . ......... . .. . . ......... ..... ..... . .. . ...................... .. . ... . .. .. . . ..... . . . . . .. . . . . . . . . ... . . . ....................... . . ............... .. . ............ ... . ..... . . .. . . .. .............. . .. . . . . .. . . . . .. . . .......... . .. .. . . .. ..... . . ... . . . .. . . ..... . ...... . .. .. . . .. . . . .................. . . .. . . .. . . . . ... . . ......... . . . . . .... . . .. . ... . ... . ..... . ........ . ... . ........ ... . .. ..
lowQualScore : 7 22 7 22 7 8888 33333 77777 777777 7 7 00000 7 7 3 7 3 77777 7 22 2222 7 7 88 7 888 66666666 0 6 0 000 000 0000 0 0 0 0 0 44 8 000000000 7 22 7 7 333333333 00000 22222 0 88 0 7777777777777777777777 33 7 000 0 55 00 5 0 55555 0 5 5 0 5 00 0 5 0 0 0 0 3 3 333 3 3 0 88888888888888888888888 2 0 000000000000000 00 3 777777777777 333 3 77777 3 7 77 3 3 33 33333333333333 3 33 7 3 7 7 33 3 0 7 0 33 3 3 0000000000 3 33 33 0 3 77 22222 2 8 222 0 0 0 88 0 6 88888 8 000000 0 88 22 7 3 22 7 7 7 888888888888888888 7 3 22 7 7 22 7 7 0 0 888 0 0 555555555 0 0 0 0 2 0000 8 5 88 5 555 0 555 0 00000 0 22222222 2 555 2 55555555 000 0 55 88
consensus : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C--A--AAAG--T--TTG--A-GGA-AATTAT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACTA----A-GTGT-TTTGCA--AAGGGA-C--GGATCAA------ATAT-GCAGTTTT-TCACT---GT---AGAA----TAAA-ATACTG-G-A-ATAACCAGTCACTGT----AT-TAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-ATAATATCAT---T-NCCAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAG-AA-TATCT--ATTTTA-TGTTG-GAGATC-------TGA-TT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
Reference ( family-1604 ) : NNNNNNTATAGCAGG-TA--C-GAA--CAT-TTTCC----C--A--AAAG--T--TTG--A-GGA-AATTAT-TA--CG-AAA-G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACTA----A-GTGT-TTTGCA--AAGGGA-C--GGATCAA------ATAT-GCAGTTTT-TCACT---GT---AGAA----TAAA-ACACTG-G-A-ATAACCAGTCACTGT----AT-TAGTG-GTG--TCTAGACTTGCACTCATTG-AAAGC----TG---CC--CT-TAGTA-AG--G-TT-AGAAG-TTGAATGTT-TAG-TCTATCG-----TAA--CCAGTAAATAAGTATTGCTCACATTGNCATTAATCCAATATATAATNGTTCGTATACNCATGCACCANTTCAGAGTAGTGATGTCTCTATATTTGTACNAGTTCTNGACACCCCATAATATTATTCACA-TAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAA-------------A-T--A---GTCAAAAAGNTT-----GGAT--ACT-CTTCTTTTGGGGTAACATT-T--AATNAC--CTCCAAT---TTTCACA-ACCCATCGCAA-CACTATGGGTTTAAT-ACAATGATCAAAT-AT--ATGTA-----AAAAA---GTTTTT-ATAGAGGGATTAGCAGCTT-TTACATCCCCG--TAAAATTTNAAGCATACGCTT--AG-AC-TGTT--GA-AT-AATTGTTTCTT-TTG--CTTCAGTNAAACTTTCTC-ATTGTTTTC--GA-GAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATT---T-ATAATATCAT---T-NCCAAGATA-AA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTAATATTNACTTC--TAGACA-CCATTCGT-TGCAA--TAA-TCA-TGGAG-AA-TATCT--ATTTTA-TGTTG-GAGA---------TGA-TT-GG-TANTAGATA-GT-AAAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTC-ATTATC-A---AGAG-TGA----CA--GAGA---GAAACT-A-----ATCATCTA--AAAT-ACTTG-GGAGTT-CATTTAT
gi|1 : ATAGCAGGATA--CCGAA--CAT-TTTCC----CCCA--AAAG--A--TTATTG-CGA-AATTATATA--CG-AAA-G-TTGCTTAT-TTA--ATCA-CCA-ATTTCGAATTTATTT--ATATTACACTA-TTGT-TTTGCATAAACGGA-TATGAATCAATCCCGAGTAT-GT-GTTCGAGCGCT---GT---ATAGCATCTAGATATAATGCG-ACATAACAAA--ACCGTCCAAATGTTGTG-GCG--TCATGACTTGCACTCACTG-A--GCCCTTTGGCCCC--CT-CAGTA--G--G-TT-ACGAGCTTGAATGTTCTAG-TCTATAGACCCCTAATACCAGTAAATAAGTACT-CTCACATTAGCATTAATC--AT-TATAATTGTTCGTATACGTATGCACCAGTTCAGAGTAGTAAT-TC-CTATATTTGTACTAATTCTTGACACCC-ATAATATTATTTACA-GAATTTT-TAAAATTTAG-TTTTTCTGCGTTCCACTCTTATAAATATAATACATTATA-T--A---GTGGAAGAGATTTTCCTGGATGAAC--CTACTTT----GTA-CATT-TCTAATCACTCCTCCAATATGTGTCACATACCCATCACAAACATTATG--TTTAATTACAATGATCAAATGATTGATGTA-----AACAAC--GTTTTTTATAGAG--ATTAGCAGCTTATTACATCCCCACTTAAAA-TTAAAGGATATGCTTTCAGAAC-TGTTTGAA-ATAAATTGTTTCTTCTTGACCTTC-GTAAAACTTTCTCTATTGTTTTTCGGA-GAGTTAAAAAC-AATAATTGTA-T-TTATTTACAACCTT---C-ATATTATCATGGAC-CTCTAGAAA-AA-TGTTCTCCCTTC--TTAGTC-ACCCGTGAGTTAGTTGAGAAATTATCTACTTT----TGTTT--------GTTTTAACAT--AATTCGTTAGACAGCCATTAGTCTGCAATTTAATTCA--ACAA-AA-TATATTAATTTTA-TGTTGTGAGAAATCTAAATTTA-TT-GGTTAATTGACG-ATGAAAAAAAAGT--TCTGCATATACAGAGCAAGAACATGATATCTTTAATTC-ATTATC-AAAGAGAG-TGA----CA--GAAAACCGAAACT--------TCATCTAGCAAAT-ACTTGTGGAGTT-CA
gi|10 : ttgtcataTATGGGAGG-CAGTC-GGAAGCAT-TTTCCG---C--AGAAAAG--T--TGG--A-GAA-ATTTAT-TA--CG-AAA-GTTTGCTTTT-TTATGAT-A-A-G-A-GT-GAA-TTGTTTGGCGACTA----A-GAGT-TTTGCAG-AAGGGA-C--AGAatattatatagagagtttgaagactagaaaatattgtgtggacgtacaccttgtctgaaccatccatactctagattgtaaaaaacatctgtcattttatgtcattttacgtcaccacccaatctatcaatcttattacaataagattattaaattggagttcggtaaacaatatcccactatatagtatgatgtgcaagtgtatataaacatacattttccacaccgattcatccgtacttgtattggtcatacagtgtataa
gi|14 : ccgtgcaATATTATTCACA-TAATTTTATAG---TTAGAGTTT-TGGCGTTCCACTCTT-TAAA-------------A-TTCATGTATCAAAAAG
gi|15 : ccTCACTG-----AT--AATG-GTA--TCGAGACTTGCACTTATTGAAAAGC----TG---CCCTCT-TAGCG-AG--G-TT-AGAAcggga
gi|16 : TG-G-A-ATA-CCAGTCACTGT-------TAGTG-GTG--T-TAGCCTTGCACTCATTG-AAAGC----TG---CC--
gi|2 : TATAGCAGG-TA--C-GAA--C-T-CTTCC----C--A--AAGT--T--TTG--ATGGA-ACTTAT-TA-----GAA-G-TTGCTTTTCTTAT-ATTA-C-A-ATT--GAATTTGTTT--TCACTT----A-GTGT-TTTGCA--AAGGGGTC--AGATCAA------ATATCGCA-TTTT-TCACTTTTGTCAGGGAAAT--TAAA-ACACTG-GCA-ATAACCAGTCACTGTTT--AT-TAGTGCGTG--TCTAGACTTGCACTTAT-G-AAAGC-----G---CC--CT-TAGTATAG--G-T--AGAAG-TTGA-TGTT-T----CTATCA-----TAA--CCAGTACATAAGTATTGCTT---TTGCCAT--ATCCAATATATAATGG-----ATACCC-TGC-CCACTTC-GAGT--TGATGTCTCTATATTTGTACAAGTTTTGGACACCCCATAATTATATT-ACATTAATTTTATAA---TTAG-TTTT-CTGCGTTCCACTCTT-TAAT-------------A-T--A---GTTAAAAAGGTG-----GGAT----T-CTTCTTTTGGGGTAACATTAT--AATG----CTCCAAT---TTTCACA-ACCC-TTACCG-CACTATGGGCTTCAT--CAATGATC-AAT-AT--ATGT------AAAAC---GTTCTT-ATAGCAGGATTAGCA-CTT-TTACATCCCTG--TAAAATTTGAAGCATATG-TT--AG-ACTTGTT--GATAT-AATTGTTTCTT-TTG--CTTCA--CGAACTTTC-C-ATTGTTTTC--GACGAGTTAAACCCAAATATCTGTA-T-GT-TTTAC-ACATC---T-AT-ATATCAT---TAACCAAGATA-AT-TGT--TTTCTTCA-T--GTC-ACCC--GAGTT-GTTGA-AAATTAT-TACTTT--AGTTTTT--------TTTTTGATATTGACTCG--TAGACA-CCATTCGT-TGCAA--TAA-TCATTGGAG-AATTATCT--ATTTTA-TGTTG-GAGA---------TGA-TTGGG-TATTAGATA-GG-ACAACAAGGTCATCTGC--ATACAG---AAG-ACATGAAATCTT---TTCTATAATC-A---AGAGTTGA----CA--GAGA---TAAACT-A-------TATCT---AAAT-ACTTG-GGAGTG-CATTTAT
gi|3 : gtcaacGTTTTC--GA-GAGTTAAACCCAGAT--------T-GT-TT----------------AATATCAT---T-GCCGAGATA-AAATGT--TTCCTTCA-TTAGTCTACCC--GAATT-GTTAA-AAATTAT-TACTTTTGAGTTTTTGGGGTGGGTTTTTTATGTTTACTTC--TAGACA-CCAT----------------TCA-TGGAG-AA-TATTT--AGTTTA-TGTTG-GAGATC-------TGATTT-GG-TATTAGAAA-GT-AGAACAAGATCATCTGC--ATACAG---AAG-ACATAAAATCTT---TTC-ATTATC-T---AGGG-TAA----CAATGACA---G-AGCT-ACATGTATCATCTA--AGAT-ACTTG-GGAGGT-CATTTAT
gi|4 : GTGCCACTCTT-TAAA-------------AAT--A----TCAAAAAGTTT-----G-AT--ATTTCTTCTTTTAGGGTAACATT----AATAATG-CTCTAAT---TTTGACA-ATC-AT-GCAA-CACTTTGGGTTTAAT-ACAATGATCAAAT-AT--ATGTACCTGTAAAAAGGGGGTTTT-ATAGAGGAATTAACAGTTT-TTA-----CTG--TAAAATTTTAAGCATACCTTC--AA-AC-TG----------------TTCCT-TTA--CTTCAATTAAGTTTTTTC--------TC-----GAGTTA---CCAAATATTTGTACT-GT-TTTTC-AAATTTTCT-ATAATATCAT---T-TCCATGATA-GA-------------A--TAGTTTATCC---AATT-GTTGA-AGATCAT-TA------A----TT--------TTTTTAA-GTTTACTTC--TATAAG-CCATTCAC-TACAG--CAA-TCA-Tatagagtttaaataaagttgggctaaggatatcacctagatgtgaaaaaaatctgtcattttgtcatttactttcac
gi|5 : taTATAGCAG--T---C-GAA--CATATTTCCAAACC--A--AAAAGATAATTG--A-AGACGATTAT-TATTCG-AAAAG-TTGTTTTTATTAT-AT-AAC-ATATTT-GAATTTGTTT--TCACTA----AAGTGTATTTGCA--AGGGGT-C--ATATCAA------CTAT-GCAGTTTT-TCACT---GT---AGAA----TAAA-ATACTG-G-A-AT-ACC-GTCACTGC----TT-AAGAG-ATAGCTCTAGACTTGCACTC-TTG-AAGTC---------CC--ATATAGTA-TG--GATTAAGAAG-TTGAA-----TAGTTCTA-CG-----TAC--GCAAAAATTATGTATTGCacag
gi|6 : T--TTCCTTCAATTAGTCTACCC--GAGTT-GTTG--AAATTAT-TACTT-----TTGTT--------TTTTTAATA-TGACTTC--TAGACA-CC-TTCGT-TGCAA--TAA-TCA-TGGAGAAA-TATCT---TTTTATTGTTG-GAGATC-------TGA-TT-GG-TAATAGATATGT-AAAACAAGGTCATCTGC--ATA-AG---AGA-ACATGAAATCTT---TTC-ATTATCTA---AGAG-TGAGAAGAA--GAGA---GAAACTAA-----ATCATCTA--AAATAACTT--GGAGTCGCATTTA
gi|7 : TATAACAGG-TA--T-GGG--CAT-TTTCC----C--A--AAAG--T--TTG--A-C-A-AATTGA-GA--TGCAAA-G-TT----------T-AT-A-C-A-ATTT-GAATTTGTTT--TCACTA----A-GTGT-TTTGCA--AAGCAA-C--GAATC-A------ATAT-GTCGTTTT-TTACT---GT---AGAA----TAAA-ATACTG-G-A-AT-ACCAGTCACTG-----A--TAGTG-GTG--T-TATACTTGCACTCATTG-AAAGC----TG---CT--C--TAATA-AAACG-TT-AGAAG-TT
gi|8 : ttgcaTATAGCAGG-TA--C-GAA--CAT-TTTCC----C--A--AAAG--T--TTG--A-G-A-AATTAT-TA--CG-AA--G-TTGCTTTT-TTAT-AT-A-C-A-ATTT-GAATTTGTTT--TCACTA----A-GTGT-TTTGCA--AAGGGA-C--AGATC-A------ATAT-GCAGCTTT-CCACT---GT---AGAA----TAA
gi|9 : ttgcaACCCAAATATCTGTA-TTGT-TTTAC-ACATT---TTATAATATCAT---T-ACCAAGATAGAA-TGT--TTCCTTCA-TTAGTCTACCC--GAGTT-GTTGA-AAAATAT-TACTTT--TG-TTTT--------TTTTTAATATTGACTTC--TAGACA-CCATTCGT-TGCAA--TAA-CCA-TGGAG-AA-TATCT--ATTTTA-TGTTtaggaaagaaatgatgaaatgacaatggataataaatagtctag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAGAGTTTAAATAAGATGGGCTTAGGACGTCACCCTTGTCTAACTTCCAACCCTAGATGTGAAAAAATCTGCCATTTTGTCAATTTACTTTCACACAC
Unaligned ( gi|12 ): ACAATATCTCACTGCATAGTGTTATGTCAACTGTAATAAACTACAATTTATATACTGCTAGATCTGTCATACTCGCTATGGGTGTATGTCAGCTGTATA
Unaligned ( gi|13 ): TATAAAGTTTAAATAAAGTTGGGCTAAGGATCTCGCCTTGTTTAAATCCAACCCGAGTTATGAAAAAATATTGTCATTTTGTCATTTACTTTAGTACA
Unaligned ( gi|17 ): AAAGTTGGGCTAAGGACATCACCTGGTCTAACTCCAACCC