lowQualScore : 1111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 11 555555555555555 1 22222 777777 11 111 2222222 222222222 111 111 22 111 111 2222222 1111111 1 111 1 11 111 11 2222222 1 55555555555555555555555 2222222 11 1111 111 111 111 1111 11 4444444444444444444444444444444444444444444444 2222 111 11111 1111 111 8888888888888888888888888888888888888888888888888888888 111 2222222 111111 44444444444444444444444444444 111 1 111111 111 11 1 11 2222 555555555555555 11 111 1111 11111 444 111 2 11111 444444 111 1 33 222 22 222222 111
lowQualScore : 8 11 6 8 8 000000000000000 5 8 8 3 8 00000 0 8 999999 8 11 8 444 3 8 6666666 0 0 444444444 8 8 8 111 444 11 6 99 99 6 6 111 111 1111111 0000000 5 6 6 0 6 0 0 8 111 3 6 6 8 0 33 8 8 444 11 0 8 6666666 1 8 8 2 0 2 8 8 8 8 11111111111111111111111 3333333 11 2222 000 77 333 888 5 5 5 777 8 5 5 1 7 0 5 0000 5 5 5 5 5 66 11 6 5 3333333333333333333333333333333333333333333333 88 0000 99 6 111 6 00000 5555 111 6 7777777777777777777777777777777777777777777777777777777 6 6 3 6 111 6 9999999 6 6 4 6 888888 33333333333333333333333333333 6 5 000 3 1 3 77 5 7 666666 000 5 5 33 5 6 99 6 6 3 99 1 6 2 66 6 3333 222222222222222 88 888 99 3 99 4444 66666 888 6 6 111 77 6 6 99 6 0 6 66666 6 2 6 6 000000 99 111 77 3 1 8 22 999 11 8 333333 8 0 444 8 1 0
lowQualScore : . .. . . . ............... . . . . . ..... . . ...... . .. . ... . . ....... . . ......... . . . ... ... .. . .. .. . . ... ... ....... ....... . . . . . . . . ... . . . . . .. . . ... .. . . ....... . . . . . . . . . . ....................... ....... .. .... ... .. ... ... . . . ... . . . . . . . .... . . . . . .. .. . . .............................................. .. .... .. . ... . ..... .... ... . ....................................................... . . . . ... . ....... . . . . ...... ............................. . . ... . . . .. . . ...... ... . . .. . . .. . . . .. . . . .. . .... ............... .. ... .. . .. .... ..... ... . . ... .. . . .. . . . ..... . . . . ...... .. ... .. . . . .. ... .. . ...... . . ... . . .
lowQualScore : 0 00 7 0 0 000000000000000 0 0 0 2 0 00000 8 0 666666 0 00 0 000 0 0 0000000 8 8 666666666 0 0 2 000 000 44 7 22 22 7 7 777 777 7777777 7777777 0 7 7 8 0 8 8 0 777 3 7 0 0 8 66 0 0 000 00 8 0 0000000 4 0 0 5 0 5 0 0 0 0 44444444444444444444444 8888888 00 1111 000 99 333 666 7 7 7 999 6 7 7 6 9 1 7 6666 0 0 0 0 0 99 99 0 7 0000000000000000000000000000000000000000000000 33 8888 22 7 777 7 22222 7777 777 7 7777777777777777777777777777777777777777777777777777777 7 7 3 7 777 7 5555555 7 7 0 7 333333 00000000000000000000000000000 7 7 000 3 7 2 99 7 9 444444 000 7 7 66 7 7 22 7 7 3 22 0 7 5 55 7 2222 555555555555555 33 333 22 2 22 2222 77777 333 7 7 777 77 7 7 22 7 0 7 77777 7 5 7 7 333333 22 777 77 3 0 0 88 222 22 0 000000 0 8 000 0 4 8
consensus : NAAGTAAC-GT--AAACCGTCCCTATCT-CGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-A-----ATTTT-GAAGCGGAAAGTA-A---ATACC-AT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-A-TGATAAACG-ACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT----ATATCGTGATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATC-TGTCTTGAAACAA-AAG---GANATC-T-CTAATGATGNCGTAT-ATG----TCCGT-CCGT-AGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA------------------CAC-GCTCC----------GA-------TA-CTT----GA--TA-CGT---AA-TGC-AA-TAGGTCT---NAC---GA-AAAT-TTGTAAGNNCCTCTNNNNTTNANNNTCTNAANNTANGNTGNGTAGNANNTTGAAAATAT-CTA-GATAC-GTCCACCA---T-GCTGC-----CTTTAT-TTT-ANTTCCTC-TT---TG-AATTGG--T---------TGGTCTGTATGTC----CAAC-CTTCCTTCA-T---TCCGTGC-TTTAATTTCTG--TTTT-ACCTTTTGAACTAC------GGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-T--TTTAAGANC--CT-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTAT----CG-----TAATTG-AC-CA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGA-GAAAAG-CAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAA--TTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACA-ATTTTGATTTTG-ATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( gi|2 ) : TAAGTAAC-GT--AAACCGTCCCTATCT-CGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-A-----ATTTT-GAAGCGGAAAGTACATGTATACC-AT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-A-TGATAAATG-ATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTG---ATATCGTGATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATT-TGTCTTGAAACAA-AAG---GATATC-T-CTAATGATGCCGTAT-ATG----TCCGT-CCGT-AGCCT-T-AAC-CATGT--CTAAATTT--CAACATCTGTGATC-AGGTATTA------------------CAT----------------GA-------TA-CTT----GA--TA-CGT---AA-TGC-AA-TAGGTCT---TAC---GA-AAAT-TTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATGC-GTCCACCA---T-GCTCT-----CTTTAT-TTT-AATTCCTC-TT---TG-AATTGG--T---------TGG--------------CAAC-CTTCCTTCA-T---TCCGTGC-TTTAATTTCTG--TTTT-ACCTTTTGAACTAC------GGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-T--TTTAAGAAC--C--G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTAT----CG-----TAAT---AC-CA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGA-GAAA-G-CAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT-AGAACA-ATTTTGATTTTC-ATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-ATGGGGA-----GAAGCGGAAAGTATA---ACAAC-ATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGAAAGCGCGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|9 : cAGTAAC-GT--AAACCGTCCCTATCT-CGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-A-----ATTTT-AAAGCGGAAAGTA------TACC-AT--TTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-A-TGATAAACG-ACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCAT
gi|5 : GTAAC-GT--AAACCGTCCCTATCT-CGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-A-----ATTTT-GAAGTGGAAAGTA------TACC-AT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-A-TGATAAACG-ACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT-----TATCGTGATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATT-TGTCTTGAAAC---AAG---GATATC-T-C-AATGATGCCGTAT-G-------CCGT--CGT-AGCCT-T-AA--CATGT--CT-AATTT--CAACATCCGTGATC-AGGTATTA-------------------AC----------------GA-------TAGCTT----GA--TA-CGT---AA-TGG-CA-TAGA-CA---TAC---AN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTA-GATAC-GTCCACCA---T--CTCC-----CTTTATATTT-AATTCCTCTTT---TG-AATTGG--T---------TGGTCTGTATGTC----CAAC-CTTCCTTCA-T---CTCTTATATCTAA-TACTA--TCTC-A--TATTGAATT--------GGTTGGTCTTATGGT-GGTCCA-ATacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta
gi|8 : caactGTAAC-GT--AAACCGTCCCTATCT-CGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-A-----ATTTT-GAAGCGGAAAGTA------TACC-AT--TTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-A-TGATAAACG-GCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cgccttc
gi|1 : TAAC-GTTTAAACCGTCCCCATCT-CGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTA-----ATTTTTGAAGCGGAAA----AAGTATACCCAT--TTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGT-AAAAAT-A-TGATAAACG-ACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT----ATATCGTGATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATC-TGTCTTGAAACAA-AAGGGAGA-ATC-TCCTAATGATG-CGTATCATG----TCCGTCCCGT-AGCCTAT-AAC-CTTGTGCTTAAATTTC-CAACATCCGTGATC-AGGTATTA------------------TAG----------------GC-------T--CTTTGCCGAATTACCAT---AC-TG---A-TA--TTTTAATAC---GA-AAAT-TTGTAAGCCTCTTTGATTTTCAAGGTCAAAATCCAGGTTTAGTTGAACTTAG--AATAT-CTAGGATACGGTCCACCA---TGGCTGC-----CTTTAT-TTT-ATTTCCAC-TT---TGAAATTGGT-T---------TGGTCTGCTATTGGC--CAAC-CTTCCTTCATT---TCCGTGCGTTTAATTTCTGTCTTTT-A-CTTTTGAACTAC------GGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TGAA----TTTAAG-AC--CTTG--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTAT----CG-----TAATTTGAC-CCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGA-GAAAGG-CAATTTTTAGCTTATA-AAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCACT-TGTTTGAGAACA---TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGa
gi|15 : TCT-CGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGTggtttttcctttttttg
gi|9 : C-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTA
gi|3 : agtaacgtaaaccgtccctatctcgtcaccgtcccaaagtcgtcacgcacttttctcgtgttattctcccgttattttgcaatctacatgcttgccaggcagttaattttaaagcggaaagtataccattttgttttatatattccgtacaatagtttcattctttttataattacaaaatatgataaacgacgaacccctttaaaatgatagcaccatcgacttgggcgatggaaacgtgattttcatggacttcagggcgaagggtatattcgacgGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTTATAAATA----GATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTT--ATTCTGTCTTGAA-CAAGAAG---GAGATAAT-CTA--GATGCGAT-T-ATGATGATACG--CCGTTAGA-T-T-AATACATGT--CTAAATTT--CAATATCCGTGATC-AGGTATTAGAGAGATCATATGGAATTCAC----------------GA-------TA-CTTT---GA--TA-CGT---AAATGC-AAGTAGGTCT---AACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTCAAGGTAAGGTGTGTAGTTGACTGAAAATAT-CTA--ATAC-GTC-ACCA---T-GCTGC-----CTTTAT-TTT-ATTTCCTC-TT---TGCAATTGAGTT---------TGGTCTGTATGTC----CAAT-ATTCCTTCA-TAGTTCCGTGC-TTTAATTTCTG--TTTT-ACCTTTTGAACTAC------GGT---TCTT--GGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAAT--TTTATGACC--T--G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAGTACG-----TATT---GCACA-AAGAA---TT--AG-CAAG-AG-AACACGGG--CGA-GAAA-G-CAA-----AGCTT-TATAAGCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTAG-----GTGAAGCATAGAAAGTTCC--TTGA---A---ACAC-TTT--TCACTTCGTTTGAGAACA--TTTTGATTTTG-ATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CTggtttttccttttaagg
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT----ATATC----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATT-TGTCTTG-AACAA-AAG---GGTATC-T-CTAATGATGCCGTGT-ATG----TCCGT-CCGT-AGCCT-T-AAC-CATTT--CTAAATTT--CAACATCCGTGATC-AGGTATTA------------------CATGGCTCTTTCGAATTCCGA-------TA-CTT----GA--TA-CGT---AA-TGC-AA-TAGGTCT---TAC---GA-AAAT-TTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT-CTA-GATAC-GTCCACCA---T-GCTGC-----CTTTA
gi|6 : G-CTTGTCTGAC-TTTAGGCCGCT-GTT----ATATTGTGAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATC-TGTCTTGAAACAA-AAG---GAGATC-T-CTAATGATGGCGTAT-ATG----TCCGT-CCGA-AGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA------------------TATTGCTCTTAC-------GAATTCCTATA-CTT----GA--TA-CGT---AA-TGC-AA-TAGGTCT---AAC---GA-ACAT-TTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATAC-GTCCACCA---T-GCTGC-----CTTTAT-TTT-ATTTCCTC-TT---TC-AATTGG--T---------TGGTCTGTATGTCCATGCAAT-CTTCCTTCA-T---TCCGTGC-TTTAATTTCTG--TTTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TGAA----TTTAAG-AC--CTTG--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTAT----CG-----TAATTG-AC-CA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGA-GAAA-ATCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAC--ATTTTGATTTTG-ATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgtgatttaccttttgaactacggttctttggtgtcaatctgcagactccttctgtattttattcatgtctctgaattcaaagtgaattcgttctattcgtagtcttaatttaagatcttgttgtgattttatacaatgttattatgtatcgtaattgaccaaagaatctacgccagaggaacgcgggcgagaaaagcaaaacttataaagccgctacacttggacatggaacagtaacagaagctaacgttagtgaagcatagaaagttccttggacaacactttcgtcactcgtttgagcacattttgattttgattgaactgttaacgatacatgttcatcaatttgaaaatttgaattgaaattaggtttctgtattctgtgggtttttccttttaagg
gi|10 : caATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATC-TGCTTTTAAACAA-AAGCA-GATATT-T-ATAAAAATTGCGTAT-ATG----ACCGT-CCGT-ACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG------------------CGTTATTCC----------GA-------TG-CTT----GA--TA-CACCAAAA-CACTAT-TAGGTCT---AAC---AA-AAA------------------AGTTAAGCCTCTTTAATTTTTCAGGTCAAGAACTTTAAAATGT-CTA-GATGC-GTACACCAATCT-GCCTTATTGCCTCTAT-TCTGAATTCATG-TTGTGTG----TAA--T---------TGC--------------CAGC-CTTCCTTCA-T---ggtttttcatttaag
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATC-TATCTTGAAACAA-AAG---CAAATA-T-CTAAGGATGGCGTAT-ATG----TCCGT-CCGT-AGCCT-T-GAC-CATGT--CCAATTTT--CAATATCCGTGAT
gi|14 : G----TCCGT-CCGT-AGCCT-T-AAC-CATGT--CTAAACTT--CAACATCCGTGATC-AGGTA
gi|7 : TTGT-ATT-AAT-CCTC-TT----G-AACTTG--TCTGTCTCTTTAG--------------TCACACATCGCTCA-T---CCGATGA-CTAAATTTCTG--TTTT-AACTT--GAACTAC------GGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TGAA-TAACATAACTTC--T--G--T---TG--ATTT------ATCAT--TTATTA--TGTAT----CA-----TAATTG-AC-CA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGA-GAAAAG-CAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAT--ATCTTGATTTTG-ATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|12 : TTCA-T---TCCG-GT-T------------TTTT-ACCTTTT---CTAC------GG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--GAA-T--TATAAGACCTTC--GTTT---TG--CATTTACATTACAA--------A--TGTAT----CGGCAATTAATAG-AC-CA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAA-G-CAA-----AGCTAATA-ACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGTggtttttccttttaaa
gi|4 : TG--ATTT-ACCTTTTGAACTAC------GGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TTAA-T--TT-AAGATC--TT-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTAT----CG-----TAATTG-AC-CA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGA-GAAAAG-CAA-----AACTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT--GAGCACATTTTGATTTTG-ATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 444444444444444 22222 444444 111 111 2222222 11111 11111 111 111 111 1111111 1 111 1 111 2222222 11111111 111111 1111 111 11111 11 111111111111111111111111111111111111111111111 111 111 444444444444444444444444444444444444444444444 111 1 11 22222222222 1 222222222 11 111111 11 1 11 11 2222222222222222 11 111 11111 111 111 11111 444444 111 1 22 111111 111
lowQualScore : 6 99 5 6 6 111111111111111 6 6 1 6 33333 666666 111 99 6 111 6 1111111 66666 2 66666 1 111 5 66 77 5 5 000 000 8888888 5 1 555 5 5 3 6 000 5 3 6 99 6 6 111 99 6 1111111 6 6 8 6 6 6 6 6 1 6 66666666 999999 99 0000 888 66 000 666 5 3 5 66 66 1 5 5 5 22222 5 5 2 55 4 4 4 66 00 5 444444444444444444444444444444444444444444444 77 5 5 000 5 5 5 888 000 5 5 1 77 000000000000000000000000000000000000000000000 5 5 5 66 5 1 1 333 0 66 11 0 5 11111111111 0 4 777 0 0 1 000000000 5 11 5 444444 888 5 5 11 5 5 77 5 5 1 77 5 0 22 5 00 1 0000000000000000 55 555 66 1 77 44444 000 5 1 5 000 4 5 5 77 0 44444 5 1 0 5 5 111111 77 000 5 1 6 22 6 6 999999 6 111 6
lowQualScore : . .. . . . ............... . . . . ..... ...... ... .. . ... . ....... ..... . ..... . ... . .. .. . . ... ... ....... . . ... . . . . ... . . . .. . . ... .. . ....... . . . . . . . . . . ........ ...... .. .... ... .. ... ... . . . .. .. . . . . ..... . . . .. . . . .. .. . ............................................. .. . . ... . . . ... ... . . . .. ............................................. . . . .. . . . ... . .. .. . . ........... . . ... . . . ......... . .. . ...... ... . . .. . . .. . . . .. . . .. . .. . ................ .. ... .. . .. ..... ... . . . ... . . . .. . ..... . . . . . ...... .. ... . . . .. . . ...... . ... .
lowQualScore : 7 22 7 7 7 777777777777777 7 7 0 7 33333 000000 777 22 7 777 7 7777777 77777 5 77777 7 777 7 44 99 7 7 000 000 6666666 7 4 999 7 7 3 7 000 7 3 7 88 7 7 777 22 7 7777777 7 7 0 7 7 7 7 7 0 7 55555555 222222 22 6666 888 99 555 222 0 2 0 99 99 0 0 0 0 55555 9 0 0 66 4 4 4 11 66 0 999999999999999999999999999999999999999999999 99 7 7 000 7 7 7 999 000 7 7 0 99 999999999999999999999999999999999999999999999 7 7 7 44 0 0 4 888 0 99 99 8 0 11111111111 2 4 888 0 2 4 000000000 0 99 6 444444 888 0 0 99 0 7 99 7 7 4 99 7 7 99 7 77 4 6666666666666666 77 777 44 4 99 33333 000 7 7 7 000 3 7 7 99 1 33333 7 4 7 7 7 666666 99 000 7 4 7 88 7 7 222222 7 777 7
consensus : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-TG-----------TT-----C---CG-------A--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCNNAAGNCAGGNTNNGTAGAACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAC----CCT-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( family-1602 ) : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-CG-----------CT-----C---CG-------A--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGNNCCTCTNNNNTTNANNNTCTNAANNTANGNTGNGTAGNANNTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAN----CCT-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAA--TTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|1 : TAAC-GTTTAAACCGTCCCCATC-TCGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTAATTTTT----GAAGCGGAAA--A-A---GTATACCCAT--TTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGTA-AAAAT-----ATGATAAACGACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT-ATATCGT-GATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATCTGTCTTGAAACAA-AAG--GGAGAATC-TCCTA-ATG-----ATG-CGTATCATGTCCGTCCCGTAGCCTAT-AAC-CTTGTGCTTAAATTTC-CAACATCCGTGATC-AGGTATTA---------TA-GG-----------CTCTTTGC---CG-------AATTA-CC---ATAC-T---GA-T----A-T---TTTAATAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAATCCAGGTTTAGTTGAACTT--AGAATAT-CTAGGATACGGTCCACCATGGCTGCCTTTAT-TTTATTTCCAC---TTTGAAATT--GGT-TTGGTCTGCTAT-T-GGC----CAACCTTCCTTCATT---TCCGTGCGTTTAATT---------TC-TGTCTTTTA-CTTTTGAAC------TACGGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TGAA--TTTAAGAC----CTT-G--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTATCG-----TA---ATTTGACCCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGAGAAAGGCAATTTTTAGCTT-ATAAAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCACT-TGTTTGAGAACA--TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|10 : ATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATCTGCTTTTAAACAA-AAGCAG--ATATT-T-ATA-AAA-----ATTGCGTAT-ATGACCGT-CCGTACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG---------CGTTA-----------TT-----C---CG-------A--TG-CTT-GATACACCAAAA-CACTAT-TAGGTCT--AAC---AA-AAAA-GT-TA--AG--CCTC-----TTTAATTTTTCAGGTCA--------AGAACTTT-AAAATGT-CTA-GATGC-GTACACCAA-TCTGCC-------TTATTGCCTCTATTCTG-AATTCATG--TT-GTGTG-TAATT-G-C----CAGCCTTCCTTCA-T---ggtttttcctttttttg
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-A----TGGGGAGAAGCGGAAAGTATA---ACA---ACATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGA-AAGCG-CGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|12 : cTTCA-T---TCCG-GT-T----------------------TTTTACCTTTT---C------TACGG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--GAA-TTATAAGAC----CTTCGTTT---TG--CATTTACATTACAA--------A--TGTATCGGCAATTA---A-TAGACCA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAAGCAA-----AGCTA-ATAACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGT
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATCTATCTTGAAACAA-AAG--C--AAATA-T-CTA-AGG-----ATGGCGTAT-ATGTCCGT-CCGTAGCCT-T-GAC-CATGT--CCAATTTT--CAATATCCGTGATg
gi|14 : GTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAACTT--CAACATCCGTGATC-AGGTA
gi|15 : TC-TCGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGT
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CT
gi|2 : AAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTACATGTATA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-----ATGATAAATGATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTGATATCGT-GATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAAACAA-AAG--G--ATATC-T-CTA-ATG-----ATGCCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCTGTGATC-AGGTATTA---------CA-------------------------TG-------A--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTATN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATGC-GTCCACCAT-GCTCTCTTTAT-TTTAATTCCTC---TTTG-AATT--GG--TTGG------------------CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAA----CC--G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-T--ACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAG-AAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT-AGAACAATTTTGA-TTTTCATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|3 : tGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTT-ATA-AATAGATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTTA-TTCTGTCTTGAA-CAAGAAG--G--AGATAAT-CTAGATGCGATTATGATG-AT-ACG-CCGT----TAGA-T-T-AATACATGT--CTAAATTT--CAATATCCGTGATC-AGGTATTAGAGAGATCATA-TGGAA--------TT-----CA--CG-------A--TA-CTTTGATACGT---AAATGC-AAGTAGGTCT--AACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTC--AAGGTAAGGTGTGTAGTTGACTGAAAATAT-CTA--ATAC-GTC-ACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTGCAATT--GAGTTTGGTCTG-TA--T-GTC----CAATATTCCTTCA-TAGTTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT--GGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAATTTTATGA-----CCT-G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAG-----TACGTA-TTGCACA-AAGAA---TT--AG-CAAG-AG-AACACGGG--CGAGAAA-GCAA-----AGCTTTATAA-GCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTAG-----GTGAAGCATAGAAAGTTCC--TTGA---A---ACAC-TTT--TCACTTCGTTTGAGAACA-TTTTGA-TTTTGATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATC-----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAA-CAA-AAG--G--GTATC-T-CTA-ATG-----ATGCCGTGT-ATGTCCGT-CCGTAGCCT-T-AAC-CATTT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-TGGCTCTTTCGAATT-----C---CG-------A--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTGTA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAN-NNNNNNNNNNN---NNNN-NNNN--NN--NNNNNNNN-NN--N-NNN----NNNNNNNNNNNNN-N---NNNNNNN-NNNNNNNNNNNNNNNNTCGTG--ATTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TTAA-TTT-AAGAT----CTT-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AACTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGCAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttccttttaagg
gi|5 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGTGGAAAGTA------TA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT--TATCGT-GATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATTTGTCTTGAAAC---AAG--G--ATATC-T-C-A-ATG-----ATGCCGTAT-G---CCGT--CGTAGCCT-T-AA--CATGT--CT-AATTT--CAACATCCGTGATC-AGGTATTA----------A-------------------------CG-------A--TAGCTT-GATACGT---AA-TGG-CA-TAGA-CA--TAC---AN-NNNN-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTA-GATAC-GTCCACCAT--CTCCCTTTATATTTAATTCCTCT--TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---CTCTTATATCTAA-T---------AC-TA--TCTCA--TATTGAAT------T--GGTTGGTCTTATGGT-GGTCCA-ATggtttttccttttaagg
gi|6 : caactG-CTTGTCTGAC-TTTAGGCCGCT-GTT-ATATTGT-GAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--AGATC-T-CTA-ATG-----ATGGCGTAT-ATGTCCGT-CCGAAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------TATTG-----------CT-----CTTACGAATTCCTA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--AAC---GA-ACAT-TTGTN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTC-AATT--GG--TTGGTCTG-TA--T-GTCCATGCAATCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TGT-TTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TGAA--TTTAAGAC----CTT-G--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGAGAAAATCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGgccttc
gi|7 : caTTGT-ATTAAT-CCTC---TT-G-AACT--TG--TCTGTCTC-TT--TAGTCA---CA--CATCGCTCA-T---CCGATGA-CTAAATT---------TC-TG--TTTTAACTT--GAAC------TACGGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TGAA-T---AACATAACTTCT-G--T---TG--ATTT------ATCAT--TTATTA--TGTATCA-----TA---A-TTGACCA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAT-ATCTTGA-TTTTGATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttcatttaag
gi|8 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-AATTTT-----GAAGCGGAAAGTA------TA---CCAT--TTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGGCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cggtttttccttttaaa
gi|9 : AGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-AATTTT-----AAAGCGGAAAGTA------TA---CCAT--TTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATa
gi|9 : CGC-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTAacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 444444444444444 22222 444444 111 111 2222222 11111 11111 111 111 111 1111111 1 111 1 111 2222222 11111111 111111 1111 111 11111 11 111111111111111111111111111111111111111111111 111 111 444444444444444444444444444 111 1 11 22222222222 1 222222222 11 111111 11 1 11 11 22222222222 11 111 11111 111 111 11111 222222 111 1 22 111111 111
lowQualScore : 6 99 5 6 6 111111111111111 6 6 1 6 33333 666666 111 99 6 111 6 1111111 66666 2 66666 1 111 5 66 77 5 5 000 000 8888888 5 1 555 5 5 3 6 000 5 3 6 99 6 6 111 99 6 1111111 6 6 8 6 6 6 6 6 1 6 66666666 999999 99 0000 888 66 000 666 5 3 5 66 66 1 5 5 5 22222 5 5 2 55 4 4 4 66 00 5 111111111111111111111111111111111111111111111 77 5 5 000 5 5 5 888 000 5 5 1 77 0 666666666666666666666666666 5 5 5 66 5 1 1 333 0 66 11 0 5 11111111111 0 4 777 0 0 1 000000000 5 11 5 444444 888 5 5 11 5 5 77 5 5 1 77 5 0 22 5 00 0 22222222222 55 555 66 1 77 44444 000 5 1 5 000 4 5 5 77 0 44444 5 1 0 5 5 666666 77 000 5 1 6 22 6 6 999999 6 111 6
lowQualScore : . .. . . . ............... . . . . ..... ...... ... .. . ... . ....... ..... . ..... . ... . .. .. . . ... ... ....... . . ... . . . . ... . . . .. . . ... .. . ....... . . . . . . . . . . ........ ...... .. .... ... .. ... ... . . . .. .. . . . . ..... . . . .. . . . .. .. . ............................................. .. . . ... . . . ... ... . . . .. . ........................... . . . .. . . . ... . .. .. . . ........... . . ... . . . ......... . .. . ...... ... . . .. . . .. . . . .. . . .. . .. . ........... .. ... .. . .. ..... ... . . . ... . . . .. . ..... . . . . . ...... .. ... . . . .. . . ...... . ... .
lowQualScore : 7 22 7 7 7 777777777777777 7 7 0 7 33333 000000 777 22 7 777 7 7777777 77777 5 77777 7 777 7 44 99 7 7 000 000 6666666 7 4 999 7 7 3 7 000 7 3 7 88 7 7 777 22 7 7777777 7 7 0 7 7 7 7 7 0 7 55555555 222222 22 6666 888 99 555 222 0 2 0 99 99 0 0 0 0 55555 9 0 0 66 4 4 4 11 66 0 777777777777777777777777777777777777777777777 99 7 7 000 7 7 7 999 000 7 7 0 99 1 333333333333333333333333333 7 7 7 44 0 0 4 888 0 99 99 8 0 11111111111 2 4 888 0 2 4 000000000 0 99 6 444444 888 0 0 99 0 7 99 7 7 4 99 7 7 99 7 77 1 44444444444 77 777 44 4 99 33333 000 7 7 7 000 3 7 7 99 1 33333 7 4 7 7 7 666666 99 000 7 4 7 88 7 7 222222 7 777 7
consensus : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGACC-TT-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( family-1602 ) : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCNNAAGNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGACC-CT-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|1 : TAAC-GTTTAAACCGTCCCCATC-TCGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTAATTTTT----GAAGCGGAAA--A-A---GTATACCCAT--TTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGTA-AAAAT-----ATGATAAACGACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT-ATATCGT-GATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATCTGTCTTGAAACAA-AAG--GGAGAATC-TCCTA-ATG-----ATG-CGTATCATGTCCGTCCCGTAGCCTAT-AAC-CTTGTGCTTAAATTTC-CAACATCCGTGATC-AGGTATTA---------TA-G-----------G-----------CTCTTTGC-CGAATTA-CC---ATAC-T---GA-T----A-T---TTTAATAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAATCCAGGTTTAGTTG--AACTT--AGAATAT-CTAGGATACGGTCCACCATGGCTGCCTTTAT-TTTATTTCCAC---TTTGAAATT--GGT-TTGGTCTGCTAT-T-GGC----CAACCTTCCTTCATT---TCCGTGCGTTTAATT---------TC-TGTCTTTTA-CTTTTGAAC------TACGGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TGAA--TTTAAGACC-TT-G--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTATCG-----TA---ATTTGACCCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGAGAAAGGCAATTTTTAGCTT-ATAAAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCACT-TGTTTGAGAACA--TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|10 : ATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATCTGCTTTTAAACAA-AAGCAG--ATATT-T-ATA-AAA-----ATTGCGTAT-ATGACCGT-CCGTACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG---------CGTT-----------A-----------TT-----C-CGA--TG-CTT-GATACACCAAAA-CACTAT-TAGGTCT--AAC---AA-AAAA-GT-TA--AGCCTCTTTAATTTTTCAGGTCA---------------AG--AACTTT-AAAATGT-CTA-GATGC-GTACACCAA-TCTGCC-------TTATTGCCTCTATTCTG-AATTCATG--TT-GTGTG-TAATT-G-C----CAGCCTTCCTTCA-T---ggtttttcctttttttg
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-A----TGGGGAGAAGCGGAAAGTATA---ACA---ACATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGA-AAGCG-CGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|12 : cTTCA-T---TCCG-GT-T----------------------TTTTACCTTTT---C------TACGG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--GAA-TTATAAGACC-TTCGTTT---TG--CATTTACATTACAA--------A--TGTATCGGCAATTA---A-TAGACCA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAAGCAA-----AGCTA-ATAACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGT
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATCTATCTTGAAACAA-AAG--C--AAATA-T-CTA-AGG-----ATGGCGTAT-ATGTCCGT-CCGTAGCCT-T-GAC-CATGT--CCAATTTT--CAATATCCGTGATg
gi|14 : GTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAACTT--CAACATCCGTGATC-AGGTA
gi|15 : TC-TCGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGT
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CT
gi|2 : AAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTACATGTATA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-----ATGATAAATGATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTGATATCGT-GATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAAACAA-AAG--G--ATATC-T-CTA-ATG-----ATGCCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCTGTGATC-AGGTATTA---------CA-T---------------------------------GA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTATN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATGC-GTCCACCAT-GCTCTCTTTAT-TTTAATTCCTC---TTTG-AATT--GG--TTGG------------------CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAAC-C--G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-T--ACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAG-AAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT-AGAACAATTTTGA-TTTTCATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|3 : tGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTT-ATA-AATAGATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTTA-TTCTGTCTTGAA-CAAGAAG--G--AGATAAT-CTAGATGCGATTATGATG-AT-ACG-CCGT----TAGA-T-T-AATACATGT--CTAAATTT--CAATATCCGTGATC-AGGTATTAGAGAGATCATA-T-----------GGAA--------TT-----CACGA--TA-CTTTGATACGT---AAATGC-AAGTAGGTCT--AACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTC--AAGGTAAGGTGTGTAGTTGACT--GAAAATAT-CTA--ATAC-GTC-ACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTGCAATT--GAGTTTGGTCTG-TA--T-GTC----CAATATTCCTTCA-TAGTTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT--GGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAATTTTATGACC--T-G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAG-----TACGTA-TTGCACA-AAGAA---TT--AG-CAAG-AG-AACACGGG--CGAGAAA-GCAA-----AGCTTTATAA-GCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTAG-----GTGAAGCATAGAAAGTTCC--TTGA---A---ACAC-TTT--TCACTTCGTTTGAGAACA-TTTTGA-TTTTGATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATC-----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAA-CAA-AAG--G--GTATC-T-CTA-ATG-----ATGCCGTGT-ATGTCCGT-CCGTAGCCT-T-AAC-CATTT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------GGCTCTTTCGAATT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTGTA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNTAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAN-NNNNNNNNNNN---NNNN-NNNN--NN--NNNNNNNN-NN--N-NNN----NNNNNNNNNNNNN-N---NNNNNNN-NNNNNNNNNNNNNNNNTCGTG--ATTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TTAA-TTT-AAGATC-TT-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AACTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGCAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttccttttaagg
gi|5 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGTGGAAAGTA------TA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT--TATCGT-GATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATTTGTCTTGAAAC---AAG--G--ATATC-T-C-A-ATG-----ATGCCGTAT-G---CCGT--CGTAGCCT-T-AA--CATGT--CT-AATTT--CAACATCCGTGATC-AGGTATTA----------A----------------------------------CGA--TAGCTT-GATACGT---AA-TGG-CA-TAGA-CA--TAC---AN-NNNN-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNATACTA-GATAC-GTCCACCAT--CTCCCTTTATATTTAATTCCTCT--TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---CTCTTATATCTAA-T---------AC-TA--TCTCA--TATTGAAT------T--GGTTGGTCTTATGGT-GGTCCA-ATggtttttccttttaagg
gi|6 : caactG-CTTGTCTGAC-TTTAGGCCGCT-GTT-ATATTGT-GAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--AGATC-T-CTA-ATG-----ATGGCGTAT-ATGTCCGT-CCGAAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------TA-TTGCTCTTACGAA-----------TT-----C-CTA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--AAC---GA-ACAT-TTGTN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTC-AATT--GG--TTGGTCTG-TA--T-GTCCATGCAATCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TGT-TTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TGAA--TTTAAGACC-TT-G--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGAGAAAATCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGgccttc
gi|7 : caTTGT-ATTAAT-CCTC---TT-G-AACT--TG--TCTGTCTC-TT--TAGTCA---CA--CATCGCTCA-T---CCGATGA-CTAAATT---------TC-TG--TTTTAACTT--GAAC------TACGGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TGAA-TAACATAACTTCT-G--T---TG--ATTT------ATCAT--TTATTA--TGTATCA-----TA---A-TTGACCA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAT-ATCTTGA-TTTTGATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttcatttaag
gi|8 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-AATTTT-----GAAGCGGAAAGTA------TA---CCAT--TTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGGCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cggtttttccttttaaa
gi|9 : AGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-AATTTT-----AAAGCGGAAAGTA------TA---CCAT--TTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATa
gi|9 : CGC-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTAacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 444444444444444 22222 444444 111 111 2222222 11111 11111 111 111 111 1111111 1 111 1 111 2222222 11111111 111111 1111 111 11111 11 111111111111111111111111111111111111111111111 111 111 44444444444444444444444444 111 1 11 22222222222 1 222222222 11 111111 11 1 11 11 1111111111 11 111 11111 111 111 11111 222222 111 1 22 111111 111
lowQualScore : 6 99 5 6 6 111111111111111 6 6 1 6 33333 666666 111 99 6 111 6 1111111 66666 2 66666 1 111 5 66 77 5 5 000 000 8888888 5 1 555 5 5 3 6 000 5 3 6 99 6 6 111 99 6 1111111 6 6 8 6 6 6 6 6 1 6 66666666 999999 99 0000 888 66 000 666 5 3 5 66 66 1 5 5 5 22222 5 5 2 55 4 4 4 66 00 5 111111111111111111111111111111111111111111111 77 5 5 000 5 5 5 888 000 5 5 1 77 0 44444444444444444444444444 5 5 5 66 5 1 1 333 0 66 11 0 5 11111111111 0 4 777 0 0 1 000000000 5 11 5 444444 888 5 5 11 5 5 77 5 5 1 77 5 0 22 5 00 0 5 9999999999 55 555 66 1 77 44444 000 5 1 5 000 4 5 5 77 0 44444 5 1 0 5 5 666666 77 000 5 1 6 22 6 6 999999 6 111 6
lowQualScore : . .. . . . ............... . . . . ..... ...... ... .. . ... . ....... ..... . ..... . ... . .. .. . . ... ... ....... . . ... . . . . ... . . . .. . . ... .. . ....... . . . . . . . . . . ........ ...... .. .... ... .. ... ... . . . .. .. . . . . ..... . . . .. . . . .. .. . ............................................. .. . . ... . . . ... ... . . . .. . .......................... . . . .. . . . ... . .. .. . . ........... . . ... . . . ......... . .. . ...... ... . . .. . . .. . . . .. . . .. . .. . . .......... .. ... .. . .. ..... ... . . . ... . . . .. . ..... . . . . . ...... .. ... . . . .. . . ...... . ... .
lowQualScore : 7 22 7 7 7 777777777777777 7 7 0 7 33333 000000 777 22 7 777 7 7777777 77777 5 77777 7 777 7 44 99 7 7 000 000 6666666 7 4 999 7 7 3 7 000 7 3 7 88 7 7 777 22 7 7777777 7 7 0 7 7 7 7 7 0 7 55555555 222222 22 6666 888 99 555 222 0 2 0 99 99 0 0 0 0 55555 9 0 0 66 4 4 4 11 66 0 777777777777777777777777777777777777777777777 99 7 7 000 7 7 7 999 000 7 7 0 99 1 99999999999999999999999999 7 7 7 44 0 0 4 888 0 99 99 8 0 11111111111 2 4 888 0 2 4 000000000 0 99 6 444444 888 0 0 99 0 7 99 7 7 4 99 7 7 99 7 77 1 7 6666666666 77 777 44 4 99 33333 000 7 7 7 000 3 7 7 99 1 33333 7 4 7 7 7 666666 99 000 7 4 7 88 7 7 222222 7 777 7
consensus : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( family-1602 ) : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|1 : TAAC-GTTTAAACCGTCCCCATC-TCGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTAATTTTT----GAAGCGGAAA--A-A---GTATACCCAT--TTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGTA-AAAAT-----ATGATAAACGACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT-ATATCGT-GATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATCTGTCTTGAAACAA-AAG--GGAGAATC-TCCTA-ATG-----ATG-CGTATCATGTCCGTCCCGTAGCCTAT-AAC-CTTGTGCTTAAATTTC-CAACATCCGTGATC-AGGTATTA---------TA-G-----------G-----------CTCTTTGC-CGAATTA-CC---ATAC-T---GA-T----A-T---TTTAATAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAATCCAGGTTTAGTTG--AACTT--AGAATAT-CTAGGATACGGTCCACCATGGCTGCCTTTAT-TTTATTTCCAC---TTTGAAATT--GGT-TTGGTCTGCTAT-T-GGC----CAACCTTCCTTCATT---TCCGTGCGTTTAATT---------TC-TGTCTTTTA-CTTTTGAAC------TACGGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TGAA--TTTAAG-ACCT-T-G--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTATCG-----TA---ATTTGACCCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGAGAAAGGCAATTTTTAGCTT-ATAAAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCACT-TGTTTGAGAACA--TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|10 : ATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATCTGCTTTTAAACAA-AAGCAG--ATATT-T-ATA-AAA-----ATTGCGTAT-ATGACCGT-CCGTACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG---------CGTT-----------A-----------TT-----C-CGA--TG-CTT-GATACACCAAAA-CACTAT-TAGGTCT--AAC---AA-AAAA-GT-TA--AGCCTCTTTAATTTTTCAGGTCA---------------AG--AACTTT-AAAATGT-CTA-GATGC-GTACACCAA-TCTGCC-------TTATTGCCTCTATTCTG-AATTCATG--TT-GTGTG-TAATT-G-C----CAGCCTTCCTTCA-T---ggtttttcctttttttg
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-A----TGGGGAGAAGCGGAAAGTATA---ACA---ACATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGA-AAGCG-CGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|12 : cTTCA-T---TCCG-GT-T----------------------TTTTACCTTTT---C------TACGG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--GAA-TTATAAG-ACCT-TCGTTT---TG--CATTTACATTACAA--------A--TGTATCGGCAATTA---A-TAGACCA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAAGCAA-----AGCTA-ATAACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGT
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATCTATCTTGAAACAA-AAG--C--AAATA-T-CTA-AGG-----ATGGCGTAT-ATGTCCGT-CCGTAGCCT-T-GAC-CATGT--CCAATTTT--CAATATCCGTGATg
gi|14 : GTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAACTT--CAACATCCGTGATC-AGGTA
gi|15 : TC-TCGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGT
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CT
gi|2 : AAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTACATGTATA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-----ATGATAAATGATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTGATATCGT-GATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAAACAA-AAG--G--ATATC-T-CTA-ATG-----ATGCCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCTGTGATC-AGGTATTA---------CA-T---------------------------------GA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTATN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATGC-GTCCACCAT-GCTCTCTTTAT-TTTAATTCCTC---TTTG-AATT--GG--TTGG------------------CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAACC----G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-T--ACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAG-AAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT-AGAACAATTTTGA-TTTTCATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|3 : tGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTT-ATA-AATAGATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTTA-TTCTGTCTTGAA-CAAGAAG--G--AGATAAT-CTAGATGCGATTATGATG-AT-ACG-CCGT----TAGA-T-T-AATACATGT--CTAAATTT--CAATATCCGTGATC-AGGTATTAGAGAGATCATA-T-----------GGAA--------TT-----CACGA--TA-CTTTGATACGT---AAATGC-AAGTAGGTCT--AACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTCAA--GGTAAGGTGTGTAGTTGACT--GAAAATAT-CTA--ATAC-GTC-ACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTGCAATT--GAGTTTGGTCTG-TA--T-GTC----CAATATTCCTTCA-TAGTTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT--GGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAATTTTATG-ACCT---G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAG-----TACGTA-TTGCACA-AAGAA---TT--AG-CAAG-AG-AACACGGG--CGAGAAA-GCAA-----AGCTTTATAA-GCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTAG-----GTGAAGCATAGAAAGTTCC--TTGA---A---ACAC-TTT--TCACTTCGTTTGAGAACA-TTTTGA-TTTTGATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATC-----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAA-CAA-AAG--G--GTATC-T-CTA-ATG-----ATGCCGTGT-ATGTCCGT-CCGTAGCCT-T-AAC-CATTT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------GGCTCTTTCGAATT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTGTA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNTAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAN-NNNNNNNNNNN---NNNN-NNNN--NN--NNNNNNNN-NN--N-NNN----NNNNNNNNNNNNN-N---NNNNNNN-NNNNNNNNNNNNNNNNTCGTG--ATTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TTAA-TTT-AAG-ATCT-T-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AACTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGCAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttccttttaagg
gi|5 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGTGGAAAGTA------TA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT--TATCGT-GATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATTTGTCTTGAAAC---AAG--G--ATATC-T-C-A-ATG-----ATGCCGTAT-G---CCGT--CGTAGCCT-T-AA--CATGT--CT-AATTT--CAACATCCGTGATC-AGGTATTA----------A----------------------------------CGA--TAGCTT-GATACGT---AA-TGG-CA-TAGA-CA--TAC---AN-NNNN-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNATACTA-GATAC-GTCCACCAT--CTCCCTTTATATTTAATTCCTCT--TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---CTCTTATATCTAA-T---------AC-TA--TCTCA--TATTGAAT------T--GGTTGGTCTTATGGT-GGTCCA-ATggtttttccttttaagg
gi|6 : caactG-CTTGTCTGAC-TTTAGGCCGCT-GTT-ATATTGT-GAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--AGATC-T-CTA-ATG-----ATGGCGTAT-ATGTCCGT-CCGAAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------TA-TTGCTCTTACGAA-----------TT-----C-CTA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--AAC---GA-ACAT-TTGTN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTC-AATT--GG--TTGGTCTG-TA--T-GTCCATGCAATCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TGT-TTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TGAA--TTTAAG-ACCT-T-G--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGAGAAAATCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGgccttc
gi|7 : caTTGT-ATTAAT-CCTC---TT-G-AACT--TG--TCTGTCTC-TT--TAGTCA---CA--CATCGCTCA-T---CCGATGA-CTAAATT---------TC-TG--TTTTAACTT--GAAC------TACGGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TGAA-TAACATA-ACTTCT-G--T---TG--ATTT------ATCAT--TTATTA--TGTATCA-----TA---A-TTGACCA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAT-ATCTTGA-TTTTGATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttcatttaag
gi|8 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-AATTTT-----GAAGCGGAAAGTA------TA---CCAT--TTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGGCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cggtttttccttttaaa
gi|9 : AGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-AATTTT-----AAAGCGGAAAGTA------TA---CCAT--TTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATa
gi|9 : CGC-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTAacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 444444444444444 22222 444444 111 111 2222222 11111 11111 111 111 111 1111111 1 111 1 111 2222222 11111111 111111 1111 111 11111 11 111111111111111111111111111111111111111111111 111 111 44444444444444444444444444 111 1 11 22222222222 1 222222222 11 111111 11 1 11 11 1111111111 11 111 11111 111 111 11111 222222 111 1 22 111111 111
lowQualScore : 6 99 5 6 6 111111111111111 6 6 1 6 33333 666666 111 99 6 111 6 1111111 66666 2 66666 1 111 5 66 77 5 5 000 000 8888888 5 1 555 5 5 3 6 000 5 3 6 99 6 6 111 99 6 1111111 6 6 8 6 6 6 6 6 1 6 66666666 999999 99 0000 888 66 000 666 5 3 5 66 66 1 5 5 5 22222 5 5 2 55 4 4 4 66 00 5 111111111111111111111111111111111111111111111 77 5 5 000 5 5 5 888 000 5 5 1 77 0 44444444444444444444444444 5 5 5 66 5 1 1 333 0 66 11 0 5 11111111111 0 4 777 0 0 1 000000000 5 11 5 444444 888 5 5 11 5 5 77 5 5 1 77 5 0 22 5 00 0 5 9999999999 55 555 66 1 77 44444 000 5 1 5 000 4 5 5 77 0 44444 5 1 0 5 5 666666 77 000 5 1 6 22 6 6 999999 6 111 6
lowQualScore : . .. . . . ............... . . . . ..... ...... ... .. . ... . ....... ..... . ..... . ... . .. .. . . ... ... ....... . . ... . . . . ... . . . .. . . ... .. . ....... . . . . . . . . . . ........ ...... .. .... ... .. ... ... . . . .. .. . . . . ..... . . . .. . . . .. .. . ............................................. .. . . ... . . . ... ... . . . .. . .......................... . . . .. . . . ... . .. .. . . ........... . . ... . . . ......... . .. . ...... ... . . .. . . .. . . . .. . . .. . .. . . .......... .. ... .. . .. ..... ... . . . ... . . . .. . ..... . . . . . ...... .. ... . . . .. . . ...... . ... .
lowQualScore : 7 22 7 7 7 777777777777777 7 7 0 7 33333 000000 777 22 7 777 7 7777777 77777 5 77777 7 777 7 44 99 7 7 000 000 6666666 7 4 999 7 7 3 7 000 7 3 7 88 7 7 777 22 7 7777777 7 7 0 7 7 7 7 7 0 7 55555555 222222 22 6666 888 99 555 222 0 2 0 99 99 0 0 0 0 55555 9 0 0 66 4 4 4 11 66 0 777777777777777777777777777777777777777777777 99 7 7 000 7 7 7 999 000 7 7 0 99 1 99999999999999999999999999 7 7 7 44 0 0 4 888 0 99 99 8 0 11111111111 2 4 888 0 2 4 000000000 0 99 6 444444 888 0 0 99 0 7 99 7 7 4 99 7 7 99 7 77 1 7 6666666666 77 777 44 4 99 33333 000 7 7 7 000 3 7 7 99 1 33333 7 4 7 7 7 666666 99 000 7 4 7 88 7 7 222222 7 777 7
consensus : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( family-1602 ) : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|1 : TAAC-GTTTAAACCGTCCCCATC-TCGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTAATTTTT----GAAGCGGAAA--A-A---GTATACCCAT--TTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGTA-AAAAT-----ATGATAAACGACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT-ATATCGT-GATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATCTGTCTTGAAACAA-AAG--GGAGAATC-TCCTA-ATG-----ATG-CGTATCATGTCCGTCCCGTAGCCTAT-AAC-CTTGTGCTTAAATTTC-CAACATCCGTGATC-AGGTATTA---------TA-G-----------G-----------CTCTTTGC-CGAATTA-CC---ATAC-T---GA-T----A-T---TTTAATAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAATCCAGGTTTAGTTG--AACTT--AGAATAT-CTAGGATACGGTCCACCATGGCTGCCTTTAT-TTTATTTCCAC---TTTGAAATT--GGT-TTGGTCTGCTAT-T-GGC----CAACCTTCCTTCATT---TCCGTGCGTTTAATT---------TC-TGTCTTTTA-CTTTTGAAC------TACGGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TGAA--TTTAAG-ACCT-T-G--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTATCG-----TA---ATTTGACCCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGAGAAAGGCAATTTTTAGCTT-ATAAAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCACT-TGTTTGAGAACA--TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|10 : ATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATCTGCTTTTAAACAA-AAGCAG--ATATT-T-ATA-AAA-----ATTGCGTAT-ATGACCGT-CCGTACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG---------CGTT-----------A-----------TT-----C-CGA--TG-CTT-GATACACCAAAA-CACTAT-TAGGTCT--AAC---AA-AAAA-GT-TA--AGCCTCTTTAATTTTTCAGGTCA---------------AG--AACTTT-AAAATGT-CTA-GATGC-GTACACCAA-TCTGCC-------TTATTGCCTCTATTCTG-AATTCATG--TT-GTGTG-TAATT-G-C----CAGCCTTCCTTCA-T---ggtttttcctttttttg
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-A----TGGGGAGAAGCGGAAAGTATA---ACA---ACATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGA-AAGCG-CGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|12 : cTTCA-T---TCCG-GT-T----------------------TTTTACCTTTT---C------TACGG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--GAA-TTATAAG-ACCT-TCGTTT---TG--CATTTACATTACAA--------A--TGTATCGGCAATTA---A-TAGACCA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAAGCAA-----AGCTA-ATAACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGT
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATCTATCTTGAAACAA-AAG--C--AAATA-T-CTA-AGG-----ATGGCGTAT-ATGTCCGT-CCGTAGCCT-T-GAC-CATGT--CCAATTTT--CAATATCCGTGATg
gi|14 : GTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAACTT--CAACATCCGTGATC-AGGTA
gi|15 : TC-TCGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGT
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CT
gi|2 : AAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTACATGTATA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-----ATGATAAATGATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTGATATCGT-GATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAAACAA-AAG--G--ATATC-T-CTA-ATG-----ATGCCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCTGTGATC-AGGTATTA---------CA-T---------------------------------GA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTATN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATGC-GTCCACCAT-GCTCTCTTTAT-TTTAATTCCTC---TTTG-AATT--GG--TTGG------------------CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAGAACC----G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-T--ACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAG-AAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTT-AGAACAATTTTGA-TTTTCATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|3 : tGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTT-ATA-AATAGATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTTA-TTCTGTCTTGAA-CAAGAAG--G--AGATAAT-CTAGATGCGATTATGATG-AT-ACG-CCGT----TAGA-T-T-AATACATGT--CTAAATTT--CAATATCCGTGATC-AGGTATTAGAGAGATCATA-T-----------GGAA--------TT-----CACGA--TA-CTTTGATACGT---AAATGC-AAGTAGGTCT--AACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTCAA--GGTAAGGTGTGTAGTTGACT--GAAAATAT-CTA--ATAC-GTC-ACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTGCAATT--GAGTTTGGTCTG-TA--T-GTC----CAATATTCCTTCA-TAGTTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT--GGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAATTTTATG-ACCT---G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAG-----TACGTA-TTGCACA-AAGAA---TT--AG-CAAG-AG-AACACGGG--CGAGAAA-GCAA-----AGCTTTATAA-GCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTAG-----GTGAAGCATAGAAAGTTCC--TTGA---A---ACAC-TTT--TCACTTCGTTTGAGAACA-TTTTGA-TTTTGATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATC-----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAA-CAA-AAG--G--GTATC-T-CTA-ATG-----ATGCCGTGT-ATGTCCGT-CCGTAGCCT-T-AAC-CATTT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------GGCTCTTTCGAATT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--TAC---GA-AAAT-TTGTA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNTAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAN-NNNNNNNNNNN---NNNN-NNNN--NN--NNNNNNNN-NN--N-NNN----NNNNNNNNNNNNN-N---NNNNNNN-NNNNNNNNNNNNNNNNTCGTG--ATTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TTAA-TTT-AAG-ATCT-T-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AACTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGCAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttccttttaagg
gi|5 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGTGGAAAGTA------TA---CCAT--TTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT--TATCGT-GATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATTTGTCTTGAAAC---AAG--G--ATATC-T-C-A-ATG-----ATGCCGTAT-G---CCGT--CGTAGCCT-T-AA--CATGT--CT-AATTT--CAACATCCGTGATC-AGGTATTA----------A----------------------------------CGA--TAGCTT-GATACGT---AA-TGG-CA-TAGA-CA--TAC---AN-NNNN-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNATACTA-GATAC-GTCCACCAT--CTCCCTTTATATTTAATTCCTCT--TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---CTCTTATATCTAA-T---------AC-TA--TCTCA--TATTGAAT------T--GGTTGGTCTTATGGT-GGTCCA-ATggtttttccttttaagg
gi|6 : caactG-CTTGTCTGAC-TTTAGGCCGCT-GTT-ATATTGT-GAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--AGATC-T-CTA-ATG-----ATGGCGTAT-ATGTCCGT-CCGAAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------TA-TTGCTCTTACGAA-----------TT-----C-CTA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--AAC---GA-ACAT-TTGTN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTC-AATT--GG--TTGGTCTG-TA--T-GTCCATGCAATCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TGT-TTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TGAA--TTTAAG-ACCT-T-G--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGAGAAAATCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGgccttc
gi|7 : caTTGT-ATTAAT-CCTC---TT-G-AACT--TG--TCTGTCTC-TT--TAGTCA---CA--CATCGCTCA-T---CCGATGA-CTAAATT---------TC-TG--TTTTAACTT--GAAC------TACGGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TGAA-TAACATA-ACTTCT-G--T---TG--ATTT------ATCAT--TTATTA--TGTATCA-----TA---A-TTGACCA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAAT-ATCTTGA-TTTTGATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttcatttaag
gi|8 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-AATTTT-----GAAGCGGAAAGTA------TA---CCAT--TTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGGCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cggtttttccttttaaa
gi|9 : AGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-AATTTT-----AAAGCGGAAAGTA------TA---CCAT--TTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATa
gi|9 : CGC-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTAacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta
blockSeqs : A . T . G . A A G . GGGGA CATGTA . AC A ACC . TGTGTGT TAAGC A CACTG A AAT A CC AT . T CGT CGT GGGTGTC T A ATA . . C C AAA . T T A G . TCC . C CATTAGA C . . A T C T G G A GAATAAAG ACTCTT . AAAA ATT GC AAA GC T A G CA . T A . G CGATT G . A C . A A . TC A GAGAGATCATATGGAATTCA . G T CAA A T G A CCG C C A CA NNNNNNNNNNNNNNNNNNNNNNNN A . . T A T G TAT C CA GT . TGTCCATG . AGT A T NNNNNNNNN G T C TACCGG TGG A G GT . . CA T A C AT . AT A AT A TCGTTT TC CAT CG A . GCAAT CGT . A . AAG C . T GC . T C . G TAACGT GG AAC . A T AA . . ACAATA T AAT G
blockSeqs : . . . . . . . . G . . TAA . . . . . . . C . A . . C . . . . . . . A T . . . . . . . . A . . . . . . . . . . . . . . A . TGA . . . . . A TG . A . . . A . . . . G . T C . . . . . . CATGGCTCTTTCGAATTC . . . . . . . T . . . G . NNNNNNNNNNNNNNNNNNNNNNNN . . . G . A T T . . . . TAGTCA . . . T . . . C . . . . . . . . . . . . . T . T . TGTTG TG C G A . . . . T . . A . . . . . A . . TAACGT . . . . . A . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . C . G . . A . . . . . . . A T . . . . . . . . A . . . . . . . . . . . . . . G . TAA . . . . . T G . A . . . T . . . . C . T C . . . . . . TATTGCTCTTACGAATTC . . . . . . . A . . . G . NNNNNNNNNNNNNNNNNNNNNNNN . . . G . T T . . . . . ATTGC . . . N . . . C . . . . . . . . . . . . . T . T . CTGT . . G A . . . . T . . C . . . . . A . . TAACGT . . . . . A . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . C . A . . C . . . . . . . A T . . . . . . . . . . . . . . . . . . . . . . . G . TAA . . . . . T G . A . . . G . . . . A . T C . . . . . . CGTTATTC . . . . . . . T . . . N . NNNNNNNNNNNNNNNNNNNNNNNN . . . G . N N . . . . . TGTC . . . T . . . C . . . . . . . . . . . . . T . T . TGT . . G A . . . . T . . C . . . . . A . . TAG . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . C . . . . C . . . . . . . A T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T G . A . . . T . . . . C . T C . . . . . . CAT . . . . . . . T . . . G . AGGTAAGGTGTGTAGTTGACTG . . . G . A T . . . . . NNNN . . . T . . . C . . . . . . . . . . . . . . . T . GT . . . . . . . . T . . . . . . . . A . . T . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T G . . . . . T . . . . C . T C . . . . . . A . . . . . . . A . . . . . AGAACTTT . . . . . T T . . . . . TGTC . . . . . . . A . . . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . G . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** *************** ***** ****** *** A* ** TAA***** ** ** C* ** ** CATGTCTTGAATTC******************************* ** N** NNNNNNNNNNNNNNNNNNNNNNNN** G* ** TGTC******* ** ** T* T* TGT******* ** ***** TAACGT
originalCons : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA-A---ATA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTA---------CA-T-----------G-----------TT-----C-CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCT--NAC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCAAAANNCAGGNTNNGTAG--AACTTTGAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TGAA-TTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
finalCons : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAAGTA------TA---CCAT--TTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTTA-GAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATATAA-----TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGTC-CGTAGCCT-T-AAC-CATGT--CTAAATTT--CAACATCCGTGATC-AGGTATTACATGTCTTGAATTC-------------------------------CGA--TA-CTT-GATACGT---AA-TGC-AA-TAGGTCTN--AC---GA-AAAT-TTGTA--AGCCTCTTTGATTTTCAAGGTCANNNNNNNNNNNNNNNNNNNNNNNN--AAAATAT-CTA-GATAC-GTCCACCATG-CTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TATGTC-------CAACCTTCCTTCA-T---TCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCGT-AGTC-TGAAT-TTTAAG-ACCTTGT-------TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTT-ATAAAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCACT-CGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Alignments
lowQualScore : 444444444444444 22222 111111 22222 111 2222222 11111 11111 111 111 111 1111111 1 111 1 111 2222222 11111111 111111 1111 111 11111 11 999999999999999999999999 111 111 777777777777777777777777 111 1 11 22222222222 111 1 222222222 11 111111 11 1 11 1111 111 11 111 11111 111 1111 11111 222222 111 1 2 111111 111
lowQualScore : 6 99 5 6 6 111111111111111 6 6 1 6 33333 99 999999 33333 6 111 6 1111111 66666 2 66666 1 111 5 66 77 5 5 000 000 8888888 5 1 555 5 5 3 6 000 5 3 6 99 6 6 111 99 6 1111111 6 6 8 6 6 6 6 6 1 6 66666666 999999 99 0000 888 66 000 666 5 3 5 66 66 1 5 5 5 22222 5 5 2 55 4 666 66 00 5 888888888888888888888888 66 5 5 555 5 5 1 3 000 5 5 1 77 0 444444444444444444444444 5 5 5 0 66 5 1 1 333 0 66 11 0 5 11111111111 0 222 0 0 1 000000000 5 11 5 444444 888 0 5 5 11 5 5 77 5 5 1 77 5 0 22 5 5 5 0 5 0000 77 777 55 555 66 1 77 44444 000 5 1 5 0000 3 5 5 77 5 44444 5 0 5 5 777777 77 000 5 1 6 3 6 6 999999 6 111 6
lowQualScore : . .. . . . ............... . . . . ..... .. ...... ..... . ... . ....... ..... . ..... . ... . .. .. . . ... ... ....... . . ... . . . . ... . . . .. . . ... .. . ....... . . . . . . . . . . ........ ...... .. .... ... .. ... ... . . . .. .. . . . . ..... . . . .. . ... .. .. . ........................ .. . . ... . . . . ... . . . .. . ........................ . . . . .. . . . ... . .. .. . . ........... . ... . . . ......... . .. . ...... ... . . . .. . . .. . . . .. . . .. . . . . . .... .. ... .. ... .. . .. ..... ... . . . .... . . . .. . ..... . . . . ...... .. ... . . . . . . ...... . ... .
lowQualScore : 7 22 7 7 7 777777777777777 7 7 0 7 33333 22 222222 33333 7 777 7 7777777 77777 5 77777 7 777 7 44 99 7 7 000 000 6666666 7 4 999 7 7 3 7 000 7 3 7 88 7 7 777 22 7 7777777 7 7 0 7 7 7 7 7 0 7 55555555 222222 22 6666 888 99 555 222 0 2 0 99 99 0 0 0 0 55555 9 0 0 66 4 222 11 66 0 444444444444444444444444 44 7 7 777 7 7 4 0 000 7 7 0 99 1 777777777777777777777777 7 7 7 7 44 0 0 4 888 0 99 99 8 0 11111111111 2 222 0 2 4 000000000 0 99 6 444444 888 4 0 0 99 0 7 99 7 7 4 99 7 7 99 7 7 0 1 7 9999 99 999 77 777 44 4 99 33333 000 7 7 7 1111 0 7 7 99 0 33333 7 7 7 7 999999 99 000 7 4 7 7 7 7 222222 7 777 7
consensus : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAA--GTA------TACC-----ATTTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-TAA-C-CATGT--CTAAATTT--CAACATCCGTGATCA-GGTATTA-------CA-TG--TCTT----GAATTC-CGATA-C-TTGATACGT---AATGCAA-T-AGGTCTNAC---GA-AAAT-TTGT--AAGCCTCTTTGATTTTCAAGGTCA--AGGTNCGGNNTNNGNTNAACTTAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA---TTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TG-AATTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
Reference ( family-1602 ) : NAAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAA--GTA------TACC-----ATTTTG-TTTTAGATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATCGT-GATA---TAA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--ANATC-T-CTA-ATG-----ATGNCGTAT-ATGTCCGT-CCGTAGCCT-TAA-C-CATGT--CTAAATTT--CAACATCCGTGATCA-GGTATTA-------CA-TG--TCTT----GAATTC-CGATA-C-TTGATACGT---AATGCAA-T-AGGTCTNAC---GA-AAAT-TTGT--AAGCCTCTTTGATTTTCAAGGTCANNNNNNNNNNNNNNNNNNNNNNNNAAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTANTTCCTC---TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA---TTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TG-AATTTTAAG-ACCT-T-G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTTGAGAACAATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|1 : TAAC-GTTTAAACCGTCCCCATC-TCGTCACCGTCC-AAAGTCGTCATGCACTTTTCTCGTGTTTATCATCCCGT-TTATTTTGCCAATACTATTTTGCAATCTAC-ATGCTTGCC-AGGCGATTTAATTTTT----GAAGCGGAAAAAGTA------TACCC----ATTTTG-TGTTAGATATT---CCGTTACA-------AT-GTTTAATTCTTTTTATA-----AGTA-AAAAT-----ATGATAAACGACAACCTCTTTTAAAATG---ATAGCAC-CAT-CGA--CATTGGACGA-TGG---AAACG---GAGTT-------TTCATA---C-T-TCAGGGCGACAGGGTATATTCGAACGCCATGGCCAATGGAAATAGC-ACCATGTTTTAGCGGGATC----TTAGTAAACTAGGATTGAG-TATCAATTTTAGAT-TTAGTTGTT---CTGATGATAATTCGAGTTGAAT--AC-CC-AATATT-------CAAGTATATATGAACTG-AATGACTTTAAAGACAGG-CTTTTC-GAC-TTTAG-CCGCT-GTT-ATATCGT-GATA----AA--TTACATCAATCT------TTTTATGGAAACATGCATTGT----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTACTT-ATCTGTCTTGAAACAA-AAG--GGAGAATC-TCCTA-ATG-----ATG-CGTATCATGTCCGTCCCGTAGCCTATAA-C-CTTGTGCTTAAATTTC-CAACATCCGTGATCA-GGTATTA-------TA-GGC-TCTTTGCCGAATTA-CCATA-C--TGATAT-------TTTAA-T--------AC---GA-AAAT-TTGT--AAGCCTCTTTGATTTTCAAGGTCA--AAATCCAGGTTTAGTTGAACTTAGAATAT-CTAGGATACGGTCCACCATGGCTGCCTTTAT-TTTATTTCCAC---TTTGAAATT--GGT-TTGGTCTGCTAT-T-GGC----CAACCTTCCTTCAT--TTCCGTGCGTTTAATT---------TC-TGTCTTTTA-CTTTTGAAC------TACGGT---TCAT-TTGT-GT-TCAGATCTGCC--AGACTCC-TTCTGTA-TTTT-TTCATGTCTCTGAACTTCAAAGTGAA--TTCGTTCTAATTCGTTAGTC-TG-AA-TTTAAG-ACCT-T-G--TTTATG--ATTTTA---TACAAT-GTTATTACTTGTATCG-----TA---ATTTGACCCTAAGAA---TCTCAGCCCAG-AGG-ACGC-GG--CGAGAAAGGCAATTTTTAGCTTATA-AAGCCGCTACAGATTGACACTGGAACAGT-AA-ACAAG-------TAGTGAAGCATAGAAATTTCC--TTGG---ACAAACACTTTTCGTCAC-TTGTTTGAGAACA--TTTGATTTTTGATTGAAACTGTTCACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|10 : ATGCATTGG----TAATAT---TGGCTAAAAAAATATTACTTTTCAC-GCTTCTTTTATCTGCTTTTAAACAA-AAGCAG--ATATT-T-ATA-AAA-----ATTGCGTAT-ATGACCGT-CCGTACCCT-TAAAC-CATGT--CTAATTTTTCCAACATCCGTGATCAAGGTATTG-------C---G--TT--------ATTC-CGATG-C-TTGATACACCAAAACACTA-TTAGGTCTAAC---AA-AAAA-GT-T--AAGCCTCTTTAATTTTTCAGGTCA----------------AGAACTTTAAAATGT-CTA-GATGC-GTACACCAA-TCTGCC-------TTATTGCCTCTATTCTG-AATTCATG--TT-GTGTG-TAATT-G-C----CAGCCTTCCTTCA---Tggtttttcctttttttg
gi|11 : AAGTAACAGT--AAACCGTCCCTATCTTCGTCACCGTCCCAAAGTCGTCTAGCA-TTTTCTCGTGTT-ATTCT-CCGTGT---------------ATTTTGCAATCTACAATGCTTGCCAAGGC-GTC-A----TGGGGAGAAGCGGAAA--GTA------TAACAACATACTTTGATTTCAGATATTACCCCGT-GCATGTGTGTGCAGT---ATACCTTTTATATAAGCATTAAAGAATCACTGATGA-AAGCG-CGAACCCCATTAAAATGAATATATGACACATCCGAATT-TTGGGCGATTGGCGTAGAGA---TGGTTGGGTGTCTTCATATGACATATCAGGGTGA-AGG
gi|12 : cTTCA---TTCCG-GT-T----------------------TTTTACCTTTT---C------TACGG----TCTT-TGGTGG--TCA-GTCTG-CCAGGGCTCCTTTCCGTATTGTTATTCATGTCTCTGAACTTTGAAATGAAATTTCGTTCT-GTT-----GTC--G-AATTATAAG-ACCT-TCGTTT---TG--CATTTACATTACAA--------A--TGTATCGGCAATTA---A-TAGACCA-AAGAAAAGTAT-CG-CCAGTGGGAACCTGGGGCCGACAAAAGCAA-----AGCTAATA-ACGACGCTACA--TGGACA-TGGAACAATGGACACAAGC-----TCAGT-AAGCATAGAAAGGTCCGGTTGGAACAT-AACACATTTTGT
gi|13 : TGCATTGC----TAATAT---TG--TAAAAA--TATTACGTTTCAA-G-TTCTTT-ATCTATCTTGAAACAA-AAG--C--AAATA-T-CTA-AGG-----ATGGCGTAT-ATGTCCGT-CCGTAGCCT-TGA-C-CATGT--CCAATTTT--CAATATCCGTGATg
gi|14 : GTCCGT-CCGTAGCCT-TAA-C-CATGT--CTAAACTT--CAACATCCGTGATCA-GGTA
gi|15 : TC-TCGTCAC-GTCCCAAAGTCGTCACGCACTTTTCTCGT
gi|16 : CATGTTTTAGCGTGATCA---TGAGTAA-CT
gi|2 : AAGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATATAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGCGGAAA--GTACATGTATACC-----ATTTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTTCAAAAT-----ATGATAAATGATGAACCCCTTTAAAATG---ATAAAAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTCGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTTGATATCGT-GATA---TGA--TTACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAAACAA-AAG--G--ATATC-T-CTA-ATG-----ATGCCGTAT-ATGTCCGT-CCGTAGCCT-TAA-C-CATGT--CTAAATTT--CAACATCTGTGATCA-GGTATTA-------CA-T-------------------GATA-C-TTGATACGT---AATGCAA-T-AGGTCTTAC---GA-AAAT-TTAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATGC-GTCCACCAT-GCTCTCTTTAT-TTTAATTCCTC---TTTG-AATT--GG--TTGG------------------CAACCTTCCTTCA---TTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TG-AATTTTAAGAACC----G--T---TG--ATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-T--ACCA-AAGAA---TCTCCG-CCAG-AGGAACGCGGG--CGAG-AAAGCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTT-AGAACAATTTTGA-TTTTCATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTG
gi|3 : tGGGT-TATTCGA-CGCTATGTGCAATGCAAATAGCCACTA-GTTTTAGCGTGATAAAAATAAGTAA-CTAGG-TTGAG-TATCAAT-----ATGTTATAT-TT---CTTATGATA--ATGAGTTGGATTTACGCCCAATATT-------CAAGTATATTTGAACTGCA-C-ACTT-AGA-ACAGC-TTCGTC-GACCTTTAGGCCGCTTGTT-ATA-AATAGATAGAATAAAGTTACATCAGCCTACTCTTCTCTATG--AACAT----TGCAAAATAATATATTTG--TACAAT--TTTTACTTT-CATTG-TTCTTA-TTCTGTCTTGAA-CAAGAAG--G--AGATAAT-CTAGATGCGATTATGATG-AT-ACG-CCGT----TAGA-T-TAA-TACATGT--CTAAATTT--CAATATCCGTGATCA-GGTATTAGAGAGATCA-TA----TG----GAATTCACGATA-CTTTGATACGTA--AATGCAAGT-AGGTCTAACCCGGACAGATCTTGTACAAGCCTCTTTGATTTTCAAGGTCA--AGGTAAGGTGTGTAGTTGACTGAAAATAT-CTA--ATAC-GT-CACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTGCAATT--GAGTTTGGTCTG-TA--T-GTC----CAATATTCCTTCATAGTTCCGTGC-TTTAATT---------TC-TG--TTTTACCTTTTGAAC------TACGGT---TC-T-TGGT-G--TCA-ATCTG-C--AGACTCC-TTTCGTATTTTT-TTCAT---TCTGAA-TTCAAAGTGAA--TTC--TTA-ATTAG---GTCATGAAATTTTATG-ACC--T-G--T---TGTCATTTTAC--TACAATCGAT-TTA--TGTATAG-----TACGTA-TTGCACA-AAGAA-----TTAG-CAAG-A-GAACACGGG--CGAG-AAAGCAA-----AGCTT-TATAAGCCGCTACACTTGGAC--TGGAACAGT-AACACAAGCTA-----GGTGAAGCATAGAAAGTTCC--TTGA------AACAC-TTT--TCACTTCGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTGTTAAC-AT------ACATTGTTCATCAATTTGAAA---ATTTGAATT-GAAAATAGG-TTCTGTATTCTGTG
gi|4 : TATGATA--TTGAGTTGAATTTACGCC-AATATC-------CAGGTACATTTGAACTG-A-CGACTT-AAAGACAGG-CTTGTC-GAC-TTTAGGCCGCT-GTT-ATATC-----------------ACATCAACCT------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAAT--TTTTACTTTTCAT-G-TTCTTT-ATTTGTCTTGAA-CAA-AAG--G--GTATC-T-CTA-ATG-----ATGCCGTGT-ATGTCCGT-CCGTAGCCT-TAA-C-CATTT--CTAAATTT--CAACATCCGTGATCA-GGTATTA-------CA-TGGCTCTTTC--GAATTC-CGATA-C-TTGATACGT---AATGCAA-T-AGGTCTTAC---GA-AAAT-TTGT--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAN-NNNNNNNNNNN---NNNN-NNNN--NN--NNNNNNNN-NN--N-NNN----NNNNNNNNNNNNN---NNNNNNNN-NNNNNNNNNNNNNNNNTCGTG--ATTTACCTTTTGAAC------TACGGT---TCTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTA-TTCATGTCTCTGAA-TTCAAAGTGAA--TTCGTTCT-ATTCG-TAGTC-TT-AATTT-AAG-ATCT-T-G--T---TGTGATTTTA---TACAAT-GTTATTA--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTACG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AACTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACAGAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTTGAGCAC-ATTTTGA-TTTTGATTG-AACTGTTAACGAT------ACA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttccttttaagg
gi|5 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTATT-ATTCTCCGGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCGGTT-AATTTT-----GAAGTGGAAA--GTA------TACC-----ATTTTG-TTTTAGATATT---CCAT-ACA-------ATAGTTTCATTCTTTTTATA-----ATAACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATT---ATAGCAC-CAT-AGA--C-TTGGGCAA-TGG---AAACG---TGGTT-------TTCATA-GAC-T-TCAGGGCAA-AGGGTATATTTGA-CGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCATGATCA---TGAGCAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATTCATTAGACAAGTACATTTGAACTG-A-CGACTT-AAAGCCAGGACTTGTC-GAC-TTTAGG-CGCT-GTT--TATCGT-GATA---TAA--TTACATCAACC-------TTTTATG--AACATGCATTGC----TAATAT---TG--TAAAA---TTTTATTTTTCAT---TTCTTT-ATTTGTCTTGAAAC---AAG--G--ATATC-T-C-A-ATG-----ATGCCGTAT-G---CCGT--CGTAGCCT-TAA---CATGT--CT-AATTT--CAACATCCGTGATCA-GGTATTA--------A--------------------CGATAGC-TTGATACGT---AATGGCA-T-AGA-CATAC---AN-NNNN-NNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTA-GATAC-GTCCACCAT--CTCCCTTTATATTTAATTCCTCT--TTTG-AATT--GG--TTGGTCTG-TA--T-GTC----CAACCTTCCTTCA---TCTCTTATATCTAA-T---------AC-TA--TCTCA--TATTGAAT------T--GGTTGGTCTTATGGT-GGTCCA-ATggtttttccttttaagg
gi|6 : caactG-CTTGTCTGAC-TTTAGGCCGCT-GTT-ATATTGT-GAAA---TAA--TCACATCAACCT------TTTTATG--AACATGTATTGC----TAATAT---TG--TAAAAT--GTTTACTTTTCAT-G-TTCTTT-ATCTGTCTTGAAACAA-AAG--G--AGATC-T-CTA-ATG-----ATGGCGTAT-ATGTCCGT-CCGAAGCCT-TAA-C-CATGT--CTAAATTT--CAACATCCGTGATCA-GGTATTA-------TATTGC-TCTTAC--GAATTC-CTATA-C-TTGATACGT---AATGCAA-T-AGGTCTAAC---GA-ACAT-TTGT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAT-CTA-GATAC-GTCCACCAT-GCTGCCTTTAT-TTTATTTCCTC---TTTC-AATT--GG--TTGGTCTG-TA--T-GTCCATGCAATCTTCCTTCA---TTCCGTGC-TTTAATT---------TC-TGT-TTTTACCTTTTGAACTACCGGTACGGT---TCTT-TGGT-G--TCA-AACTG-C--AGACTCC-TTCCGTATTTTT-TTCATGTCTCTGAA-TTCAAAGTGAA--TTTGTTCT-ATTCG-TAGTC-TG-AA-TTTAAG-ACCT-T-G--TTG-TG--ATTTTA---TACAAT-GTTATTT--TGTATCG-----TA---A-TTGACCA-AAGAA---TCTCTG-CCAG-AGGAACGCGGG--TGAGAAAATCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACATAATC------TAGTGAAGCATAGAATGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTTGAGAAC-ATTTTGA-TTTTGATTG-AACTATTAACGATACAATAACA-TG-TCATCAATTTGAAAAATATTGAAATTGGAAAATAGGTTTCTGTATTCTGgccttc
gi|7 : caTTGT-ATTAAT-CCTC---TT-G-AACT--TG--TCTGTCTC-TT--TAGTCA---CA--CATCGCTCA---TCCGATGA-CTAAATT---------TC-TG--TTTTAACTT--GAAC------TACGGT----CTT-TGGT-G--TCA-ATCTG-C--AGACTCC-TTCTGTATTTTT-TTCATGTCTCTGAA-TTCAAAGAGAC--T--ATTCT-ATTCGATAGT--TG-AATAACATA-ACTTCT-G--T---TG--ATTT------ATCAT--TTATTA--TGTATCA-----TA---A-TTGACCA-AAGAA---CCTCCG-CCAG-AGGAACGCGGG--CGAGAAAAGCAA-----AGCTTATA-AAGCCGCTACACTTGGACA-TGGAACAGT-AACACAAGCTAACGTTAGTGAAGCATAGAAAGTTCC--TTGG---AC-AACAC-TTTCGTCAC-TCGTTTGAGAAT-ATCTTGA-TTTTGATTG-AACTGTTAACGAT------GCA-TGTTCATCAATTTGAAA---ATTTGAATT-GAAATTAGGTTTCTGTATTCTGTGggtttttcatttaag
gi|8 : GTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCATGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGTGTTT-AATTTT-----GAAGCGGAAA--GTA------TACC-----ATTTTG-TTTAAGATATT---CCGT-ACA-------ATAGATTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGGCGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGGTT-------TTCAAA-GAC-T-TCAGGGCGA-AGGGTATATTCGA-TGCCATGTGCAATG-AAATAGC-ACCATGTTTTAGCGTGATCA---TGAGTAA-CTAGG-TTGAG-TATCAATTT-AGAT-TTATTT-TT---CTTATGATA--TTGAGTTGAATTTACGCC-AATATT-------CAAGTATATATGAACTG-A-Cggtttttccttttaaa
gi|9 : AGTAAC-GT--AAACCGTCCCTATC-TCGTCACCGTCCCAAAGTCGTCACGCACTTTTCTCGTGTT-ATTCTCCCGT-T---------------ATTTTGCAATCTAC-ATGCTTGCC-AGGCAGTT-AATTTT-----AAAGCGGAAA--GTA------TACC-----ATTTTG-TTTTATATATT---CCGT-ACA-------ATAGTTTCATTCTTTTTATA-----ATTACAAAAT-----ATGATAAACGACGAACCCCTTTAAAATG---ATAGCAC-CAT-CGA--C-TTGGGCGA-TGG---AAACG---TGATT-------TTCATG-GAC-T-TCAGGGCGA-AGGGTATATTCGA-CGCCATa
gi|9 : CGC-CAT---A--C-TTGGGCGA-------AAACGCGTTGTTT-------TTCATA-G-----------------GGTAT-TTCGA-CGCCGTGCGCA-TG-AA-T-GC-ACCATGTTTTAGCGTGATAA---TGAGTGA--TAGATTTGAGTTATCAATTT--GAT-TTATTC-TTTCCCTTAacttgggcgaaaacgcgttgtttttcatagggtatttcgacgccgtgcgcatgaatgcaccatgttttagcgtgataatgagtgatagatttgagttatcaatttgatttattctttccctta