lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 333333 11111 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 33333333333333333333333333333 111111 11 1111 1
lowQualScore : 6 000 666666 5 00000 8888 5 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000000 44 22222222222222222222222222222 7 8888 777 777777 2 1 6 555 44 4 7 4 3 1111 5
lowQualScore : . ... ...... . ..... .... . ...................................................................................................... ...... .. ............................. . .... ... ...... . . . ... .. . . . . .... .
lowQualScore : 0 555 000000 7 44444 3333 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555 66 33333333333333333333333333333 3 5555 000 111111 4 4 0 999 77 4 1 5 2 4444 0
consensus : TGGCACTNACTTTTATNTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCGGCTTGGGAGGTAAATA--AA--CCA--------------T-A-AGGTGTTGTTTT--------TT---------TTNCGTC---------TG--------ACGA-C----------AGTAAA-ATG-TTTTACAGAT--A---------AGTNATT-AA-CA-CTACACTGCTT----ATCA---ATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCC-AAAATATATTNCGCTAAA-ATTATTTGTATA
Reference ( gi|8 ) : TAGCATTT--TTTT-TTTGGTAAAGGT-AC--A--TGT--A-GCACTCTTCATCTTGGGAGGTAAA-A--TA--CCA--------------TGATAGGTGTTGTTTT--------TT---------TTTCCCC---------TG--------ATGA-C----------AGTAAA-ACA-TTTTACAGAT--A---------AATTATT-GA-CA-CTACACTGCTT----ATCA---ATT-TTC--ATGTTTTGGAACTCCGT-GCCCATC-AAAGTATATTCTGCTATA-ATTATGTGTATAT
gi|2 : TGGCACTTACTTTTATTT--CAAAGATTAT--T--TGT--A-GCACTCTTCAGCCTCGGAAGTAAATA--AA--CCA----------------A-AGGGGATGCCTT--------TT---------TTATGTC---------TGTTATTTGTATCACC----------AGTAAA-ATG--TTTACAGAC--A---------AG----T-GA----------TGTTT----ATAC---ATT-------TGTTTTGAAACTGCAT-ATCCTCT-AAAATATATTTTGCTGAA-ATTTTTTGTA
gi|5 : ctaggcttattttagtgctttagtgcaatgccgccaaatattcatatctaatttgggccaaaggttctacaataatgcgggttttcacaagaaaaataactctgcataATTG--TTTT-TATGTCAAAGGT-GA--A--TGT--A-CCACTCTTCCGCTTGGGAGGTAAATA--AA--CTA---------------AAT--------TTTT--------TTGTATATCAGTTGCTTC---------TG--------TCTA-C----------AGTAAA-ATG-TTTTACAGAT--A---------Aaacctatgacctaaagaattgccaaaatttacacctacacgaaaacgtt
gi|14 : gtagcaggtttttgctgcaaaacggtaattttggcttgtaaaattttcatttgctaaatttcaacacaaatgtctctgcaatcatgatagatatttttgcaagaaagataactctgtattgcaTAAATGT-AC--A--TGT--A-GC--TCTTCAGTTTGGGATGTAAATA--AA--CCA--------------CG---GGT-TTGTTTT--------
gi|16 : caaatagataatTAAAGGT-AC--A--GGT--TTGCACTCTTTGGCTTGGG-GGTAA------A--CCA------------------AAGTACTGTATT--------GT---------ATCC----------------------ATGA-C----------AGTAAATATG-GTTTGCAGAT--gtcagttgtttctatgtcccatacgtttatagg
gi|1 : tAAAGGT-AC--AAATGT--A-A-ACTCTTCAGCTTGGGAGGTAAA----TAAGCTACT------------TTATA--TATTATATT--------TTGGTACA---TGTCAGT---------TGTTTGAT--ATGA-C----------ATTAAA-ATACTTTTACATATGTA---------AGGAATC-AA-CT-CAGCACTGCTT----GTCA---ATT-TTC--ATGTTTTGAAACCCCATCGTCCACT-AAAATATATTCTGttaaa
gi|4 : tgctgaattccgtatagcaggtttactctgtggggtgcttattttggtggtttggtatcacatgtgaccaaatttttcaatagctaaatttgtacccaaatgtgtttgtaatttaaatacactgtcGT-AC--A--TGTGTA-ACACTCTTCAACTTGAGAGGTAAA-AACTA--CTG--------------TCA-----GTTGTTTG--------TG---------TT-----------------------------------------GCAAA-ATG-ATTTACAGAT--A---------AGTTAAT-AA-CG-CTAC--TGTTT----ATCA---AAT-TTC--ATGTTCTACAACTCCAT-GTCCGCC-AAtagatgtcgagctaaaaaatcgccaaagtttatatgctagatagtaacaacagtagtaatttaattat
gi|6 : tgttaaaacttcttgtataacggagtttcctctgcaagatcaacgtttggcttattttaataattttacatcatgctgccgatttactgcatataatgctaatttccgaccaaagatacctctaaagaacaatggctttaatggcgattttacatGT-ACTTA--TGT--A-GCACTCTTCGGTATGGGAGGTAAATA--AA--CTA--------------C----AGTATTGTTTT--------ATGACAG----TTGTTTC---------TG--------ATTA-C----------AATAAA-ACG-CTTAATAGGT--ACTAGTAAGTAATTATTAGA-CA-
gi|3 : gatttcggtttttcatagcggtttggtatcatgccgccaaattttaacggctaaaattgtgtttgcaatcacaatacagttttggtaaaaaccataactcaaaaaatatttttatCTCTTTGGCTTGGGAGGTAAA----TA-----------------------AAATGCTGTTAT--------TT---------GTACGTCAGTTGTTGATG--------ATGA-C----------AGTAAA--CA-TTTTGCAGAT--A---------AA-AATT-AA-CA-TTACGCTGTTT----ATCG---ATTCTTCTTATGATTTAAAACTCCAT-GCCCA-C-AAAAAATATTGCGCTAAA-TTTATTTGTATAt
gi|7 : gggttggttaatttgagtggttattgtaccaccaatttattgatagctaaatgatacataatttatgcaagaaagatataactctttcaaaggttcaaaggtCTCTTTAGCTTGGGAGGTAAATA--AA--CCACAGTTTTGGGGGGTTGGTTGGT-TTGTTTTTTGTTTTGTT---------TTTAAAC---------TGT-------ATTA-CGTTTCTGAGGAGTAAA-ATG-TTTTACAGAT--A---------AGC-----------CTA----AGTT----ATTAGAGA-----C--A-GTTTTGGAACTCCAT-GTCcctataagctagtaaatcgtcaaagattatacactggtggaaaaa
gi|13 : ---------TTCCTTC---------TG--------GTGG-C----------AGTGAA-GCG-TTTTAGAGAT--A---------CGTTAAT-AT-CA-TTGCACAGCTT----ATCA---ATT---------------AA-TCCAT-ACCCTCC-CAATTATATTCCGCT-TACATTATTTGTATagctgtaaatattcctcttaaacttatgagctagaaaatcactaaaatttaca
gi|9 : ---------TA--------ACGA-C----------TGTAAA-CTA-TTACACAGAT--A---------AGTAATC-AA-CA-TTACAATG-TT----ACCA---ATT-TGT--ATGTATTGGAACCACAT-GTCTGCC-AAAATATATTATG-TAT
gi|15 : ---------TA--------ACGA-C----------TGTAAA-CTA-TTACACAGAT--A---------AGTAATTCAA-CATTTACA-TG-TT----ACCA---ATT-TGT--ATGTATTGGAACCACAT-GTCC--C-AAAATATATTATGttgcatacctaagcggtagaaaattgccaatgtttacgaataatgttgatataataacaatgaaatacatctatata
gi|11 : -C----------AGTAAA-ATG-TTTTACAGA---A---------AAGTACC-AAACA-CTGCACTACTTTAATATCA---ATT-TTT--ATGCTTTGGAACTTTAT-----ATCTAAAATATATTCCGTTAAA-ATTATTTGCAT
gi|17 : -GA-CA-ATTCACTGCTT----ATTA---CTC-TTT--ATG-TTTGAAATGCCAT-GTCCACC-AAAATATATTATGgccgatgaactaaaaaaattgttgaattttgcacccatggaaaaagt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAAAAATACTGGGTATTTTTATGTCAGTTGTTAATGGTAACAGTATATCACTAAATTACTTATCATATTACTCAGTGTCTGCCAAAATATATCGTGCTTAAATTATTTTATACCTATGCACTAGAAAATTGCAAAACTTTACACCTACAGGGGAAAAA
Unaligned ( gi|12 ): TTTTAATACCTAAAATTTTGTACCCCATTGTGTCTGCATAACATGTATTTAAGCATGAAAGATACATATGTGACTCTGCATAACCTAGCTTGTAAGGTAAATAAATTACAGGGTTTATTTTTGTTGTTGTTTTTGACATCAGA
Unaligned ( gi|18 ): TAATTTGGGTTGAGTTTAGCAGTTTGGTGTCATGCTATCAAATTTTTGACAGCTAATGTGTCTACAATCCAAAC
Unaligned ( gi|19 ): ATACGTATATTTGCAAAAAAGATAACTTTTTATGGCAATTGTTTTTATATCAAA
Alignments
lowQualScore : 22222 11111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111
lowQualScore : 2 1 66666 4 55 55 55 4 44444444 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3 44 44 1 666 44 0 44 6 7777 555 555555 1 3 44 11 5 2 0
lowQualScore : . . ..... . .. .. .. . ........ ....................................................................................................... . . .. .. . ... .. . .. . .... ... ...... . . .. .. . . .
lowQualScore : 5 0 66666 0 55 55 55 0 33333333 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1 22 66 0 999 99 9 22 5 1111 888 777777 6 3 77 22 0 4 2
consensus : TGGCANTTACTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCA--CAA----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AGTAATT-AACA-CTACACTGCT----TATCA---ATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
Reference ( family-1579 ) : TGGCACTNACTTTTATNTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCA--TAA----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ATG-TTTTACAGAT--A--AGTNATT-AACA-CTACACTGCT----TATCA---ATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
gi|1 : TGTCAAAGGT-AC--AAATGT--A-A-ACTCTTCA-------GCTTGGGAGGTAAATAAGCTACTTTA----TA-----T--A------TTATATTTTG-------------------GTACATGTCAGTTG--TT---------TG-----------ATATGACATTAAA-ATACTTTTACATATGTA--AGGAATC-AACT-CAGCACTGCT----TGTCA---ATT-TTC--ATGTTTTGAAACCCCATCGTCCACTAAAATATATTCTG
gi|10 : tgctgaattccgtatagcaggtttactctgtggggtgcttattttggtggtttggtatcacatgtgaccaaatttttcaatagctaaatttgtacccaaatgtgtttgtaatttaaatacacT-ATCA-CTAAATTACT----TATCA-------------TATT-----ACTCAGT-GTCTGCCAAAATATATCGTGC-TTAAATTATTT-TATAtagatgtcgagctaaaaaatcgccaaagtttatatgctagatagtaacaacagtagtaatttaattat
gi|11 : aaaaaaatactgggtatttttatgtcagttgttaatggtaacagtaCAGTAAA-ATG-TTTTACAGAA--A--AGTACCA-AACA-CTGCACTACTTTAATATCA---ATT-TTT--ATGCTTTGGAACTTTAT-AT---CTAAAATATATTCCGT-TAAAATTATTTGCATcctatgcactagaaaattgcaaaactttacacctacaggggaaaaa
gi|12 : AAAGAT-AC--A--TAT--G-TGACTCTGCATAACCTAGCTTGTAAGGTAAATAAATTA--CAG----GG-----T---------TTAT-TTTTG-------------------TTgccgatgaactaaaaaaattgttgaattttgcacccatggaaaaagt
gi|13 : ttttaatacctaaaattttgtaccccattgtgtctgcataacatgtatttaagcatg-------------------TTCC---------T--TC---------TG-----------GT--GGCAGTGAA-GCG-TTTTAGAGAT--A--CGTTAAT-ATCA-TTGCACAGCT----TATCA---ATT---------------AA-TCCAT-ACCCTCCCAATTATATTCCGC-TTACATTATTTGTATgttgtttttgacatcaga
gi|14 : TTAAATGT-AC--A--TGT--A-GC--TCTTCA-------GTTTGGGATGTAAATAAACCA--C-G----GG-----T---------TTGT-TTT
gi|15 : caaatagataa---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AGTAATTCAACATTTACA-TG-T----TACCA---ATT-TGT--ATGTATTGGAACCACAT-GTC--CCAAAATATATTATGgtcagttgtttctatgtcccatacgtttatagg
gi|16 : TTAAAGGT-AC--A--GGT--TTGCACTCTTTG-------GCTTGGGGG-----TAAACC----AA----AG-----T--A------CTGT-ATTGT-------------------ATCC------------------------------------AT--GACAGTAAATATG-GTTTGCAGAT--
gi|17 : ACA-ATTCACTGCT----TATTA---CTC-TTT--ATGTTT-GAAATGCCAT-GTCCACCAAAATATATTATGttaaa
gi|2 : gTGGCACTTACTTTTATTT--CAAAGATTAT--T--TGT--A-GCACTCTTCA-------GCCTCGGAAGTAAATAAACCA---AA----GG-----G--G------ATGC-CTTTT-------------------TTAT---------G--TC---------TGTTATTTGTATCAC----CAGTAAA-ATG--TTTACAGAC--A--AGTGA--------------TGTT----TATAC---ATT-------TGTTTTGAAACTGCAT-ATCCTCTAAAATATATTTTGC-TGAAATTTTTTGTAtagtacctttaatt
gi|3 : ctaggcttattttagtgctttagtgcaatgccgccaaatattcatatctaatttgggccaaaggttctacaataatgcgggttttcacaagaaaaataactctgcataTAACTCTT-----TCAAAGGT-TC--A--A----A-GGTCTCTTTG-------GCTTGGGAGGTAAATAAA-------------A-----T--G------CTGT-TATTT-------------------GTAC---------G--TCAGTTGTTGATG-----------AT--GACAGT-AA-ACA-TTTTGCAGAT--A--AA-AATT-AACA-TTACGCTGTT----TATCG---ATTCTTCTTATGATTTAAAACTCCAT-GCCCACAAAAA-ATATTGCGC-TAAATTTATTTGTATAaacctatgacctaaagaattgccaaaatttacacctacacgaaaacgtt
gi|4 : gggttggttaatttgagtggttattgtaccaccaatttattgatagctaaatgatacataatttatgcaagaaagataGT-AC--A--TGTGTA-ACACTCTTCA-------ACTTGAGAGGTAAA--AAC----TAC----TG-----TCAG------TTGT-TTGTG-------------------TTGC----------------------------------------------AAA-ATG-ATTTACAGAT--A--AGTTAAT-AACG-CTAC--TGTT----TATCA---AAT-TTC--ATGTTCTACAACTCCAT-GTCCGCCAAcctataagctagtaaatcgtcaaagattatacactggtggaaaaa
gi|5 : tgttaaaacttcttgtataacggagtttcctctgcaagatcaacgtttggcttattttaataattttacatcatgctgccgatttactgcatataatgctaatttccgaccaaagatacctctaaagaacaatggctttaatggcgattttacatGCAATTGTTTTTAT--GTCAAAGGT-GA--A--TGT--A-CCACTCTTCC-------GCTTGGGAGGTAAATAAAC----TAA--------------A------TTTT-TTTGTATATCAG------------TTGC---------T--TC---------TG-----------TC--TACAGTAAA-ATG-TTTTACAGAT--A--A
gi|6 : gtagcaggtttttgctgcaaaacggtaattttggcttgtaaaattttcatttgctaaatttcaacacaaatgtctctgcaatcatgatagatatttttgcaagaaagataactctgtattGT-ACTTA--TGT--A-GCACTCTTCG-------GTATGGGAGGTAAATAAACTA--CA------G-----T--A------TTGT-TTTATGACAG--------------TTGT---------T--TC---------TG-----------AT--TACAATAAA-ACG-CTTAATAGGT--ACTAGTAAGT-AA
gi|7 : gatttcggtttttcatagcggtttggtatcatgccgccaaattttaacggctaaaattgtgtttgcaatcacaatacagttttggtaaaaaccataactcaaaaaatatttttatCTCTTTA-------GCTTGGGAGGTAAATAAACCA--CAGTTTTGGGGGGTT--GGTTGGTTTGT-TTTTTGTTTTGTTTTTAAACTGTATTAC---------GTTTC---------TG-----------AG--G--AGTAAA-ATG-TTTTACAGAT--A--AGCC--T-AA----------G-T----TATTAGAGA-----C--A-GTTTTGGAACTCCAT-GTCAGCTGTAA-ATATTCCTCTTAAACTTATttattagacat
gi|8 : TTTTTTTTGGTAAAGGT-AC--A--TGT--A-GCACTCTTCA-------TCTTGGGAGGTAAA-ATACCA--TGATA--GG-----T--G------TTGT-TTTTT-------------------TTTC---------C--CC---------TG-----------AT--GACAGTAAA-ACA-TTTTACAGAT--A--AATTATT-GACA-CTACACTGCT----TATCA---ATT-TTC--ATGTTTTGGAACTCCGT-GCCCATCAAAGTATATTCTGC-TATAATTATGTGTATAgagctagaaaatcactaaaatttaca
gi|9 : tagcatt---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AGTAATC-AACA-TTACAATG-T----TACCA---ATT-TGT--ATGTATTGGAACCACAT-GTCTGCCAAAATATATTATG--------TATTTGCATAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAATTTGGGTTGAGTTTAGCAGTTTGGTGTCATGCTATCAAATTTTTGACAGCTAATGTGTCTACAATCCAAAC
Unaligned ( gi|19 ): ATACGTATATTTGCAAAAAAGATAACTTTTTATGGCAATTGTTTTTATATCAAA
Alignments
lowQualScore : 11 222 11111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111
lowQualScore : 1 11 3 111 4 55 55 55 4 44444444 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 1 3 44 44 44 9999 0 44 0 44 4 7777 555555 1 3 44 11 5 2 0
lowQualScore : . .. . ... . .. .. .. . ........ . . ..................................................................................................... . . . .. .. .. .... . .. . .. . .... ...... . . .. .. . . .
lowQualScore : 0 22 2 111 0 55 55 55 0 33333333 3 8 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 22 22 66 0000 6 99 9 22 4 1111 777777 6 3 77 22 0 4 2
consensus : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
Reference ( family-1579 ) : TGGCANTTACTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
gi|1 : TGTCAAAGGT-AC--AAATGT--A-A-ACTCTTCA-------GCTTGGGAGGTAAATAAGCTACTTTA----TA-----T--A------TTATATTTTG-------------------GTACATGTCAGTTG--TT---------TG-----------ATATGACATTAAA-ATACTTTTACATATGTA--AG--GAA-TC-AACT-CAGCACTGCT----TGTCAATT-TTC--ATGTTTTGAAACCCCATCGTCCACTAAAATATATTCTG
gi|10 : tgctgaattccgtatagcaggtttactctgtggggtgcttattttggtggtttggtatcacatgtgaccaaatttttcaatagctaaatttgtacccaaatgtgtttgtaatttaaatacac--AG--TA---T-ATCA-CTAAATTACT----TATCA----------TATT-----ACTCAGT-GTCTGCCAAAATATATCGTGC-TTAAATTATTT-TATAtagatgtcgagctaaaaaatcgccaaagtttatatgctagatagtaacaacagtagtaatttaattat
gi|11 : aaaaaaatactgggtatttttatgtcagttgttaatggtaacCAGTAAA-ATG-TTTTACAGAA--A--AG--TAC-CA-AACA-CTGCACTACTTTAATATCAATT-TTT--ATGCTTTGGAACTTTAT-AT---CTAAAATATATTCCGT-TAAAATTATTTGCATcctatgcactagaaaattgcaaaactttacacctacaggggaaaaa
gi|12 : AAAGAT-AC--A--TAT--G-TGACTCTGCATAACCTAGCTTGTAAGGTAAATAAATTACA--G----GG-----T---------TTAT-TTTTG-------------------TTgccgatgaactaaaaaaattgttgaattttgcacccatggaaaaagt
gi|13 : ttttaatacctaaaattttgtaccccattgtgtctgcataacatgtatttaagcatg-------------------TTCC---------T--TC---------TG-----------GT--GGCAGTGAA-GCG-TTTTAGAGAT--A--CG--TTA-AT-ATCA-TTGCACAGCT----TATCAATT---------------AA-TCCAT-ACCCTCCCAATTATATTCCGC-TTACATTATTTGTATgttgtttttgacatcaga
gi|14 : TTAAATGT-AC--A--TGT--A-GC--TCTTCA-------GTTTGGGATGTAAATAAACCAC---G----GG-----T---------TTGT-TTT
gi|15 : caaatagataa---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TTCAACATTTACA-TG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTC--CCAAAATATATTATGgtcagttgtttctatgtcccatacgtttatagg
gi|16 : TTAAAGGT-AC--A--GGT--TTGCACTCTTTG-------GCTTGGG-GGTAAAC------CA--A----AG-----T--A------CTGT-ATTGT-------------------ATCC------------------------------------AT--GACAGTAAATATG-GTTTGCAGAT--
gi|17 : ACA-ATTCACTGCT----TATTACTC-TTT--ATGTTT-GAAATGCCAT-GTCCACCAAAATATATTATGttaaa
gi|2 : gTGGCACTTACTTTTATTT--CAAAGATTAT--T--TGT--A-GCACTCTTCA-------GCCTCGGAAGTAAATAAACCA-A--A----GG-----G--G------ATGC-CTTTT-------------------TTAT---------G--TC---------TGTTATTTGTATCAC----CAGTAAA-ATG-TTT-ACAGAC--A--AG--TGA---------------TGTT----TATACATT-------TGTTTTGAAACTGCAT-ATCCTCTAAAATATATTTTGC-TGAAATTTTTTGTAtagtacctttaatt
gi|3 : ctaggcttattttagtgctttagtgcaatgccgccaaatattcatatctaatttgggccaaaggttctacaataatgcgggttttcacaagaaaaataactctgcataTCAAAGGT-TC--A--A----A-GGTCTCTTTG-------GCTTGGGAGGTAAATAAA-------------A-----T--G------CTGT-TATTT-------------------GTAC---------G--TCAGTTGTTGATG-----------AT--GACAGT-AA-ACA-TTTTGCAGAT--A--AA---AA-TT-AACA-TTACGCTGTT----TATCGATTCTTCTTATGATTTAAAACTCCAT-GCCCACAAAAA-ATATTGCGC-TAAATTTATTTGTATAaacctatgacctaaagaattgccaaaatttacacctacacgaaaacgtt
gi|4 : gggttggttaatttgagtggttattgtaccaccaatttattgatagctaaatgatacataatttatgcaagaaagatataactcttGT-AC--A--TGTGTA-ACACTCTTCA-------ACTTGAGAGGTAAA--AACTAC--------TG-----TCAG------TTGT-TTGTG-------------------TTGC----------------------------------------------AAA-ATG-ATTTACAGAT--A--AG--TTA-AT-AACG-CTAC--TGTT----TATCAAAT-TTC--ATGTTCTACAACTCCAT-GTCCGCCAAcctataagctagtaaatcgtcaaagattatacactggtggaaaaa
gi|5 : tgttaaaacttcttgtataacggagtttcctctgcaagatcaacgtttggcttattttaataattttacatcatgctgccgatttactgcatataatgctaatttccgaccaaagatacctctaaagaacaatggctttaatggcgattttacatGCAATTGTTTTTAT--GTCAAAGGT-GA--A--TGT--A-CCACTCTTCC-------GCTTGGGAGGTAAATAAACTA-A--A---------------------TTTT-TTTGTATATCAG------------TTGC---------T--TC---------TG-----------TC--TACAGTAAA-ATG-TTTTACAGAT--A--A
gi|6 : gtagcaggtttttgctgcaaaacggtaattttggcttgtaaaattttcatttgctaaatttcaacacaaatgtctctgcaatcatgatagatatttttgcaagaaagataactctgtattTATTTTTAT---------GT-ACTTA--TGT--A-GCACTCTTCG-------GTATGGGAGGTAAATAAACTACA--------G-----T--A------TTGT-TTTATGACAG--------------TTGT---------T--TC---------TG-----------AT--TACAATAAA-ACG-CTTAATAGGT--ACTAG--TAA-GT-AA
gi|7 : gatttcggtttttcatagcggtttggtatcatgccgccaaattttaacggctaaaattgtgtttgcaatcacaatacagttttggtaaaaaccataactcaaaaaaCTCTTTA-------GCTTGGGAGGTAAATAAACCACA--GTTTTGGGGGGTT--GGTTGGTTTGT-TTTTTGTTTTGTTTTTAAACTGTATTAC---------GTTTC---------TG-----------AG--G--AGTAAA-ATG-TTTTACAGAT--A--AGCCTAAGTT-A-------------T----TAGAGA-----C--A-GTTTTGGAACTCCAT-GTCAGCTGTAA-ATATTCCTCTTAAACTTATttattagacat
gi|8 : TAGCATTT--TTTT-TTTGGTAAAGGT-AC--A--TGT--A-GCACTCTTCA-------TCTTGGGAGGTAAA-ATACCATG--ATA--GG-----T--G------TTGT-TTTTT-------------------TTTC---------C--CC---------TG-----------AT--GACAGTAAA-ACA-TTTTACAGAT--A--AA--TTA-TT-GACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCGT-GCCCATCAAAGTATATTCTGC-TATAATTATGTGTATAgagctagaaaatcactaaaatttaca
gi|9 : ---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TC-AACA-TTACAATG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTCTGCCAAAATATATTATG--------TATTTGCATAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAATTTGGGTTGAGTTTAGCAGTTTGGTGTCATGCTATCAAATTTTTGACAGCTAATGTGTCTACAATCCAAAC
Unaligned ( gi|19 ): ATACGTATATTTGCAAAAAAGATAACTTTTTATGGCAATTGTTTTTATATCAAA
Alignments
lowQualScore : 222 11111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111
lowQualScore : 1 77 3 111 4 55 55 55 4 44444444 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 1 3 44 44 44 9999 0 44 0 44 4 7777 555555 1 3 44 11 5 2 0
lowQualScore : . .. . ... . .. .. .. . ........ . . ..................................................................................................... . . . .. .. .. .... . .. . .. . .... ...... . . .. .. . . .
lowQualScore : 0 88 2 111 0 55 55 55 0 33333333 3 8 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 22 22 66 0000 6 99 9 22 4 1111 777777 6 3 77 22 0 4 2
consensus : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
Reference ( family-1579 ) : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
gi|1 : TGTCAAAGGT-AC--AAATGT--A-A-ACTCTTCA-------GCTTGGGAGGTAAATAAGCTACTTTA----TA-----T--A------TTATATTTTG-------------------GTACATGTCAGTTG--TT---------TG-----------ATATGACATTAAA-ATACTTTTACATATGTA--AG--GAA-TC-AACT-CAGCACTGCT----TGTCAATT-TTC--ATGTTTTGAAACCCCATCGTCCACTAAAATATATTCTG
gi|10 : tgctgaattccgtatagcaggtttactctgtggggtgcttattttggtggtttggtatcacatgtgaccaaatttttcaatagctaaatttgtacccaaatgtgtttgtaatttaaatacac--AG--TA---T-ATCA-CTAAATTACT----TATCA----------TATT-----ACTCAGT-GTCTGCCAAAATATATCGTGC-TTAAATTATTT-TATAtagatgtcgagctaaaaaatcgccaaagtttatatgctagatagtaacaacagtagtaatttaattat
gi|11 : aaaaaaatactgggtatttttatgtcagttgttaatggtaacCAGTAAA-ATG-TTTTACAGAA--A--AG--TAC-CA-AACA-CTGCACTACTTTAATATCAATT-TTT--ATGCTTTGGAACTTTAT-AT---CTAAAATATATTCCGT-TAAAATTATTTGCATcctatgcactagaaaattgcaaaactttacacctacaggggaaaaa
gi|12 : AAAGAT-AC--A--TAT--G-TGACTCTGCATAACCTAGCTTGTAAGGTAAATAAATTACA--G----GG-----T---------TTAT-TTTTG-------------------TTgccgatgaactaaaaaaattgttgaattttgcacccatggaaaaagt
gi|13 : ttttaatacctaaaattttgtaccccattgtgtctgcataacatgtatttaagcatg-------------------TTCC---------T--TC---------TG-----------GT--GGCAGTGAA-GCG-TTTTAGAGAT--A--CG--TTA-AT-ATCA-TTGCACAGCT----TATCAATT---------------AA-TCCAT-ACCCTCCCAATTATATTCCGC-TTACATTATTTGTATgttgtttttgacatcaga
gi|14 : TTAAATGT-AC--A--TGT--A-GC--TCTTCA-------GTTTGGGATGTAAATAAACCAC---G----GG-----T---------TTGT-TTT
gi|15 : caaatagataa---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TTCAACATTTACA-TG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTC--CCAAAATATATTATGgtcagttgtttctatgtcccatacgtttatagg
gi|16 : TTAAAGGT-AC--A--GGT--TTGCACTCTTTG-------GCTTGGG-GGTAAAC------CA--A----AG-----T--A------CTGT-ATTGT-------------------ATCC------------------------------------AT--GACAGTAAATATG-GTTTGCAGAT--
gi|17 : ACA-ATTCACTGCT----TATTACTC-TTT--ATGTTT-GAAATGCCAT-GTCCACCAAAATATATTATGttaaa
gi|2 : gTGGCACTTACTTTTATTT--CAAAGATTAT--T--TGT--A-GCACTCTTCA-------GCCTCGGAAGTAAATAAACCA-A--A----GG-----G--G------ATGC-CTTTT-------------------TTAT---------G--TC---------TGTTATTTGTATCAC----CAGTAAA-ATG-TTT-ACAGAC--A--AG--TGA---------------TGTT----TATACATT-------TGTTTTGAAACTGCAT-ATCCTCTAAAATATATTTTGC-TGAAATTTTTTGTAtagtacctttaatt
gi|3 : ctaggcttattttagtgctttagtgcaatgccgccaaatattcatatctaatttgggccaaaggttctacaataatgcgggttttcacaagaaaaataactctgcataTCAAAGGT-TC--A--A----A-GGTCTCTTTG-------GCTTGGGAGGTAAATAAA-------------A-----T--G------CTGT-TATTT-------------------GTAC---------G--TCAGTTGTTGATG-----------AT--GACAGT-AA-ACA-TTTTGCAGAT--A--AA---AA-TT-AACA-TTACGCTGTT----TATCGATTCTTCTTATGATTTAAAACTCCAT-GCCCACAAAAA-ATATTGCGC-TAAATTTATTTGTATAaacctatgacctaaagaattgccaaaatttacacctacacgaaaacgtt
gi|4 : gggttggttaatttgagtggttattgtaccaccaatttattgatagctaaatgatacataatttatgcaagaaagatataactcttGT-AC--A--TGTGTA-ACACTCTTCA-------ACTTGAGAGGTAAA--AACTAC--------TG-----TCAG------TTGT-TTGTG-------------------TTGC----------------------------------------------AAA-ATG-ATTTACAGAT--A--AG--TTA-AT-AACG-CTAC--TGTT----TATCAAAT-TTC--ATGTTCTACAACTCCAT-GTCCGCCAAcctataagctagtaaatcgtcaaagattatacactggtggaaaaa
gi|5 : tgttaaaacttcttgtataacggagtttcctctgcaagatcaacgtttggcttattttaataattttacatcatgctgccgatttactgcatataatgctaatttccgaccaaagatacctctaaagaacaatggctttaatggcgattttacatGCAATTGTTTTTAT--GTCAAAGGT-GA--A--TGT--A-CCACTCTTCC-------GCTTGGGAGGTAAATAAACTA-A--A---------------------TTTT-TTTGTATATCAG------------TTGC---------T--TC---------TG-----------TC--TACAGTAAA-ATG-TTTTACAGAT--A--A
gi|6 : gtagcaggtttttgctgcaaaacggtaattttggcttgtaaaattttcatttgctaaatttcaacacaaatgtctctgcaatcatgatagatatttttgcaagaaagataactctgtattTATTTTTAT---------GT-ACTTA--TGT--A-GCACTCTTCG-------GTATGGGAGGTAAATAAACTACA--------G-----T--A------TTGT-TTTATGACAG--------------TTGT---------T--TC---------TG-----------AT--TACAATAAA-ACG-CTTAATAGGT--ACTAG--TAA-GT-AA
gi|7 : gatttcggtttttcatagcggtttggtatcatgccgccaaattttaacggctaaaattgtgtttgcaatcacaatacagttttggtaaaaaccataactcaaaaaaCTCTTTA-------GCTTGGGAGGTAAATAAACCACA--GTTTTGGGGGGTT--GGTTGGTTTGT-TTTTTGTTTTGTTTTTAAACTGTATTAC---------GTTTC---------TG-----------AG--G--AGTAAA-ATG-TTTTACAGAT--A--AGCCTAAGTT-A-------------T----TAGAGA-----C--A-GTTTTGGAACTCCAT-GTCAGCTGTAA-ATATTCCTCTTAAACTTATttattagacat
gi|8 : TAGCATTT--TTTT-TTTGGTAAAGGT-AC--A--TGT--A-GCACTCTTCA-------TCTTGGGAGGTAAA-ATACCATG--ATA--GG-----T--G------TTGT-TTTTT-------------------TTTC---------C--CC---------TG-----------AT--GACAGTAAA-ACA-TTTTACAGAT--A--AA--TTA-TT-GACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCGT-GCCCATCAAAGTATATTCTGC-TATAATTATGTGTATAgagctagaaaatcactaaaatttaca
gi|9 : ---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TC-AACA-TTACAATG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTCTGCCAAAATATATTATG--------TATTTGCATAt
blockSeqs : A GT A TTG T TT . GT T ATAACCTA T T CAGTTTTGGGGGGTTGGTTGGTTTGTTTTTTGTTTTGTTTTTAAACTGTATTACGTTTCTGAGG T T . . CT CC TTC TT AT C TTAA CTTCTT G . TG GT T A
blockSeqs : T AT A G . . . . . A T C AAGGGGATGCCTTTTTTATGTCTGTTATTTGTATCAC . C . . . . GTT C AC C . TTT G . CT CC . T
blockSeqs : . . . . . . . . G C C ATGCTGTTATTTGTACGTCAGTTGTTGATGATGA . T . . . . CA C AC C . TGT A . CA CC . G
blockSeqs : . . . . . A T T CAGTATTGTTTTATGACAGTTGTTTCTGATTA . T . . . . AT T AC C . TTT A . CT AT . A
blockSeqs : . . . . . G T T AATTTTTTTGTATATCAGTTGCTTCTGTCTA . T . . . . TT A GC T . TTC A . CA AT . A
blockSeqs : . . . . . A T T TGATAGGTGTTGTTTTTTTTTCCCCTGATGA . C . . . . AT T AC T . TTC C . CG TT . A
blockSeqs : . . . . . C T C CAAAGTACTGTATTGTATCCATGA . T . . . . GT C AA T . TGT G . AG GC . .
blockSeqs : . . . . . G T C CTGTCAGTTGTTTGTGTTGC . T . . . . TT C A C . C G . CA CC
blockSeqs : . . . . . A . . . C . . . . TC T . . . . G . TG CT
blockSeqs : A . . . T . . . . T . . . . . . . . AT
blockSeqs : . C . . . . . . . . . . . . .
blockSeqs : . T . . .
blockSeqCons : ** **
originalCons : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
finalCons : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAATTTGGGTTGAGTTTAGCAGTTTGGTGTCATGCTATCAAATTTTTGACAGCTAATGTGTCTACAATCCAAAC
Unaligned ( gi|19 ): ATACGTATATTTGCAAAAAAGATAACTTTTTATGGCAATTGTTTTTATATCAAA
Alignments
lowQualScore : 222 11111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111
lowQualScore : 1 77 3 111 4 55 55 55 4 44444444 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 1 3 44 44 44 9999 0 44 0 44 4 7777 555555 1 3 44 11 5 2 0
lowQualScore : . .. . ... . .. .. .. . ........ . . ..................................................................................................... . . . .. .. .. .... . .. . .. . .... ...... . . .. .. . . .
lowQualScore : 0 88 2 111 0 55 55 55 0 33333333 3 8 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 22 22 66 0000 6 99 9 22 4 1111 777777 6 3 77 22 0 4 2
consensus : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
Reference ( family-1579 ) : TGGCANTTATTTTTATTTGTCAAAGGT-AC--A--TGT--A-GCACTCTTCG-------GCTTGGGAGGTAAATAAACCACA--A----GG-----T--G------TTGT-TTTTT-------------------TTNC---------G--TC---------TG-----------AC--GACAGTAAA-ACG-TTTTACAGAT--A--AG--TAA-TT-AACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCAT-GTCCGCCAAAATATATTNCGC-TAAAATTATTTGTATA
gi|1 : TGTCAAAGGT-AC--AAATGT--A-A-ACTCTTCA-------GCTTGGGAGGTAAATAAGCTACTTTA----TA-----T--A------TTATATTTTG-------------------GTACATGTCAGTTG--TT---------TG-----------ATATGACATTAAA-ATACTTTTACATATGTA--AG--GAA-TC-AACT-CAGCACTGCT----TGTCAATT-TTC--ATGTTTTGAAACCCCATCGTCCACTAAAATATATTCTG
gi|10 : tgctgaattccgtatagcaggtttactctgtggggtgcttattttggtggtttggtatcacatgtgaccaaatttttcaatagctaaatttgtacccaaatgtgtttgtaatttaaatacac--AG--TA---T-ATCA-CTAAATTACT----TATCA----------TATT-----ACTCAGT-GTCTGCCAAAATATATCGTGC-TTAAATTATTT-TATAtagatgtcgagctaaaaaatcgccaaagtttatatgctagatagtaacaacagtagtaatttaattat
gi|11 : aaaaaaatactgggtatttttatgtcagttgttaatggtaacCAGTAAA-ATG-TTTTACAGAA--A--AG--TAC-CA-AACA-CTGCACTACTTTAATATCAATT-TTT--ATGCTTTGGAACTTTAT-AT---CTAAAATATATTCCGT-TAAAATTATTTGCATcctatgcactagaaaattgcaaaactttacacctacaggggaaaaa
gi|12 : AAAGAT-AC--A--TAT--G-TGACTCTGCATAACCTAGCTTGTAAGGTAAATAAATTACA--G----GG-----T---------TTAT-TTTTG-------------------TTgccgatgaactaaaaaaattgttgaattttgcacccatggaaaaagt
gi|13 : ttttaatacctaaaattttgtaccccattgtgtctgcataacatgtatttaagcatg-------------------TTCC---------T--TC---------TG-----------GT--GGCAGTGAA-GCG-TTTTAGAGAT--A--CG--TTA-AT-ATCA-TTGCACAGCT----TATCAATT---------------AA-TCCAT-ACCCTCCCAATTATATTCCGC-TTACATTATTTGTATgttgtttttgacatcaga
gi|14 : TTAAATGT-AC--A--TGT--A-GC--TCTTCA-------GTTTGGGATGTAAATAAACCAC---G----GG-----T---------TTGT-TTT
gi|15 : caaatagataa---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TTCAACATTTACA-TG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTC--CCAAAATATATTATGgtcagttgtttctatgtcccatacgtttatagg
gi|16 : TTAAAGGT-AC--A--GGT--TTGCACTCTTTG-------GCTTGGG-GGTAAAC------CA--A----AG-----T--A------CTGT-ATTGT-------------------ATCC------------------------------------AT--GACAGTAAATATG-GTTTGCAGAT--
gi|17 : ACA-ATTCACTGCT----TATTACTC-TTT--ATGTTT-GAAATGCCAT-GTCCACCAAAATATATTATGttaaa
gi|2 : gTGGCACTTACTTTTATTT--CAAAGATTAT--T--TGT--A-GCACTCTTCA-------GCCTCGGAAGTAAATAAACCA-A--A----GG-----G--G------ATGC-CTTTT-------------------TTAT---------G--TC---------TGTTATTTGTATCAC----CAGTAAA-ATG-TTT-ACAGAC--A--AG--TGA---------------TGTT----TATACATT-------TGTTTTGAAACTGCAT-ATCCTCTAAAATATATTTTGC-TGAAATTTTTTGTAtagtacctttaatt
gi|3 : ctaggcttattttagtgctttagtgcaatgccgccaaatattcatatctaatttgggccaaaggttctacaataatgcgggttttcacaagaaaaataactctgcataTCAAAGGT-TC--A--A----A-GGTCTCTTTG-------GCTTGGGAGGTAAATAAA-------------A-----T--G------CTGT-TATTT-------------------GTAC---------G--TCAGTTGTTGATG-----------AT--GACAGT-AA-ACA-TTTTGCAGAT--A--AA---AA-TT-AACA-TTACGCTGTT----TATCGATTCTTCTTATGATTTAAAACTCCAT-GCCCACAAAAA-ATATTGCGC-TAAATTTATTTGTATAaacctatgacctaaagaattgccaaaatttacacctacacgaaaacgtt
gi|4 : gggttggttaatttgagtggttattgtaccaccaatttattgatagctaaatgatacataatttatgcaagaaagatataactcttGT-AC--A--TGTGTA-ACACTCTTCA-------ACTTGAGAGGTAAA--AACTAC--------TG-----TCAG------TTGT-TTGTG-------------------TTGC----------------------------------------------AAA-ATG-ATTTACAGAT--A--AG--TTA-AT-AACG-CTAC--TGTT----TATCAAAT-TTC--ATGTTCTACAACTCCAT-GTCCGCCAAcctataagctagtaaatcgtcaaagattatacactggtggaaaaa
gi|5 : tgttaaaacttcttgtataacggagtttcctctgcaagatcaacgtttggcttattttaataattttacatcatgctgccgatttactgcatataatgctaatttccgaccaaagatacctctaaagaacaatggctttaatggcgattttacatGCAATTGTTTTTAT--GTCAAAGGT-GA--A--TGT--A-CCACTCTTCC-------GCTTGGGAGGTAAATAAACTA-A--A---------------------TTTT-TTTGTATATCAG------------TTGC---------T--TC---------TG-----------TC--TACAGTAAA-ATG-TTTTACAGAT--A--A
gi|6 : gtagcaggtttttgctgcaaaacggtaattttggcttgtaaaattttcatttgctaaatttcaacacaaatgtctctgcaatcatgatagatatttttgcaagaaagataactctgtattTATTTTTAT---------GT-ACTTA--TGT--A-GCACTCTTCG-------GTATGGGAGGTAAATAAACTACA--------G-----T--A------TTGT-TTTATGACAG--------------TTGT---------T--TC---------TG-----------AT--TACAATAAA-ACG-CTTAATAGGT--ACTAG--TAA-GT-AA
gi|7 : gatttcggtttttcatagcggtttggtatcatgccgccaaattttaacggctaaaattgtgtttgcaatcacaatacagttttggtaaaaaccataactcaaaaaaCTCTTTA-------GCTTGGGAGGTAAATAAACCACA--GTTTTGGGGGGTT--GGTTGGTTTGT-TTTTTGTTTTGTTTTTAAACTGTATTAC---------GTTTC---------TG-----------AG--G--AGTAAA-ATG-TTTTACAGAT--A--AGCCTAAGTT-A-------------T----TAGAGA-----C--A-GTTTTGGAACTCCAT-GTCAGCTGTAA-ATATTCCTCTTAAACTTATttattagacat
gi|8 : TAGCATTT--TTTT-TTTGGTAAAGGT-AC--A--TGT--A-GCACTCTTCA-------TCTTGGGAGGTAAA-ATACCATG--ATA--GG-----T--G------TTGT-TTTTT-------------------TTTC---------C--CC---------TG-----------AT--GACAGTAAA-ACA-TTTTACAGAT--A--AA--TTA-TT-GACA-CTACACTGCT----TATCAATT-TTC--ATGTTTTGGAACTCCGT-GCCCATCAAAGTATATTCTGC-TATAATTATGTGTATAgagctagaaaatcactaaaatttaca
gi|9 : ---------TA-----------AC--GACTGTAAA-CTA-TTACACAGAT--A--AG--TAA-TC-AACA-TTACAATG-T----TACCAATT-TGT--ATGTATTGGAACCACAT-GTCTGCCAAAATATATTATG--------TATTTGCATAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAATTTGGGTTGAGTTTAGCAGTTTGGTGTCATGCTATCAAATTTTTGACAGCTAATGTGTCTACAATCCAAAC
Unaligned ( gi|19 ): ATACGTATATTTGCAAAAAAGATAACTTTTTATGGCAATTGTTTTTATATCAAA