lowQualScore : 1111111111111111111 11111111111111 11111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 22 77777 77777777777 1 4 1 1 3333 2 222 1 33333 1 22 1 2 1 4444444444 7777777777777777777777777777 11 1 9999999999 4444 44 333 1 1 2 2 8888888888888888888 1 11 1 2222 11 1111 1 1 1 33333333333 111111 2222 2222 2222222222 11 333 44444444444444444 333 1 4 1 11 11 1 33 2222 333 222 1 2222 333 11 33 1 222 11 22 2 44 22 1 1 22222 11 2 2 2222 2 3333 11 2 2 333 1 2222 22222 2 333333333333 22 1 1 22 33 2 22 1 66666666 2 2 11 1 1 11 1 1 111 444444 2 1 22 11 2222 4 777 22 4 2 333333 11 1 11 1 11 22 1 8888888888888888888888888888 444444444 1 1 4 1111111111111111111 666666 6666666 1 00000000000000 4 2222 4 999999 55 1 11111111111111111 2 11 333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 444 222 4444 77777777 1 11 7777 1 1 777 1 55
lowQualScore : 11 77777 11111111111 5 0 2 5 5 6 6 2222 3 555 1 55555 3 5 77 5 0 5 2222222222 0 3333333333333333333333333333 88 7 2 0000000000 1111 77 333 0 5 4 0 0 2 1111111111111111111 3 88 0 1111 33 2 6 9999 5 0 0 111 8 3 8 44444444444 8 555555 1111 88 0 2222 5555555555 33 5 333 5 22222222222222222 5 888 5 66 0 555 0 0 0 8 22 33 333 5 55 4 2 2 4 3 4444 555 3 4 666 3 0 9 1111 000 88 99 2 5 888 6 88 33 0 77 33 5 5 99999 99 4 0 3 4 0 4444 0 7777 88 0 0 333 5 5555 99999 88 8 333333333333 22 5 1 77 66 0 77 2 5 88888888 0 0 99 3 3 6 6 88 3 5 7 3 777 222222 0 3 7 0 66 88 4444 88 0 000 33 0 0 111111 2 33 3 88 3 88 00 5 5555555555555555555555555555 66 666666666 7 5 0 8888888888888888888 777777 6 1111111 5 77777777777777 0 6 9999 0 111111 55 5 77777777777777777 0 2 88 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 222 888 1111 22222222 5 2 88 6666 5 7 000 5 55
lowQualScore : .. ..... ........... . . . . . . . .... . ... . ..... . . .. . . . .......... . ............................ .. . . .......... .... .. ... . . . . . . ................... . .. . .... .. . . .... . . . ... . . . ........... . ...... .... .. . .... .......... .. . ... . ................. . ... . .. . ... . . . . .. .. ... . .. . . . . . .... ... . . ... . . . .... ... .. .. . . ... . .. .. . .. .. . . ..... .. . . . . . .... . .... .. . . ... . .... ..... .. . ............ .. . . .. .. . .. . . ........ . . .. . . . . .. . . . . ... ...... . . . . .. .. .... .. . ... .. . . ...... . .. . .. . .. .. . ............................ .. ......... . . . ................... ...... . ....... . .............. . . .... . ...... .. . ................. . . .. . ................................................................................. . ... ... .... ........ . . .. .... . . ... . ..
lowQualScore : 00 00000 00000000000 0 0 5 5 7 0 0 5555 0 000 5 00000 0 5 55 5 0 5 0000000000 7 3333333333333333333333333333 33 3 0 7777777777 0000 55 555 5 0 0 0 0 5 3333333333333333333 3 33 0 2222 88 5 5 8888 5 0 0 444 0 8 0 00000000000 0 888888 6666 88 8 8888 9999999999 66 4 111 7 22222222222222222 0 888 0 99 1 999 6 0 0 8 22 88 555 5 55 0 5 5 0 0 0000 000 0 0 555 3 7 0 7777 000 00 00 5 0 000 0 55 00 0 55 00 5 0 55555 55 0 0 0 0 0 0000 0 0000 55 0 0 555 5 0000 55555 00 5 555555555555 55 5 5 55 00 0 55 5 5 55555555 0 0 33 3 3 7 7 33 3 0 3 2 555 222222 0 3 3 7 00 00 0000 55 0 000 00 0 0 000000 5 55 3 33 3 33 77 5 0000000000000000000000000000 55 000000000 0 0 0 0000000000000000000 000000 0 0000000 0 00000000000000 0 0 0000 0 000000 00 0 00000000000000000 0 5 00 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555 555 0000 00000000 0 5 55 0000 0 0 000 0 00
consensus : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAANATTAAGTACACCTTTCCGTAGACAACGAGAAGAATANCTGGATTAGGAAACTACGGCACTGCCTTTCCATATGGNTGCAATNNGNNANGTTGGGAAGCATAGGGACAATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGACTTTTT--TCC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTACAA-CACAACCCATTCAATACAACTGATGTNTCCTNCGACCTCTCTTTATANCATTTCATTTGGAA------TAA-AC--CAT-G----GGT--CNCCA-TC-ACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTT-GT-A-TGAATTA-C-AAGAAAAAACTAAAGNTAGGNGC--CAC--TTGGATTC-C-TCAA-CACC-G----A----------AT-AC---A-G--ACTTGA--TTATATAATTGGGGATGTTGCT-CATCACAGA-CTCTT--TGTTCCACCNCGTATTAATGATACGAGNGTGAANTCCAGAAACNTCGCCGNTCCCGACATCTCAAGTTTGGGGANAATNAAGGAATCGATGCT-GTTAACGTTAACAGCAT--C-TCAATCCATAACAAAAGTACCGTCNTGTATTCCGCCTTACTTTAAGANGAAATCCACACCTTGTATTTTCAANGTAGATATAATTCCACTTATTACGCANTCCAAGTTNTATTNATTACNAAACAGGACATTGCCAGTGCCTAGATATTNGAACAATTACAACGGAAATCCTCCAAAGTGTACATGTGTCCTCTCCCCCGTTTTCGATNNTAGTCCCGCTGCTGTACATTATTATTACNGGGGGATATAAATNTATAGTCCTAAATGAGGATCTCAAGTCCCTTAATTTTNAAAAGGTCCTAAANTTTCCTGAGAACCTCGCTCATCTTAAATGGGCGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGGCGC---TGGACA----AAATCTTGAGG-GAGAGAAGATTGACACTTTGTCTGAATGGATTAANGAGTAATTCGGA---TTAATAAAATCCCGATATTCAGCCNAATTNANNGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTGGAAGAAAGACACCAAGCGGATNGGATAAATGNNTTACATAGACTNNCAATATTGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACANTTTCAATNTTCCAAGAATCA-GACTCAATTTGAT-TACCACA-CCTTTA--ATTNGA-TTNNGAAGTGCGCATAA----TAAACCCTTACAAACAAAAATACNGTCGCTGANCTCCACGT-AAGTGCTCCTA-NCTAAGCCTNTTTCTCTACTTTTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
Reference ( gi|1 ) : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACATTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACTGGATTAGGAAACTATGGCACTGCCTT-CCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA--ATATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTT--ACC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTAT--AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-TG-ACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTT-GT-A-TGAATTA-C-AAGAAAAAACTAAAGGTAAGGAC--TAC--TTGGATTCTC-TCAA-CACC-G----A----------AT-AC---A-G--ACTTGAATTTATATAATTGGGGAT-TTGCT-CATCACAGA-TTCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAG-AATCGATGCT-GTCAACATTAACAACAT--C-TCAA-C-ATAACAAAAGTAATGTCCTGTATTTCTCTTTACTTTAAGAT-AAATC-ACACCTTGT--TTTCA-TATAGATATAATTCCACT-AT--CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TT--AATTATAGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATTTA--GTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---C-GAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC---TGGA-A----AAATC-TGAGG-GAGAGGAG-CTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA--CCA-TTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTT-AAGAAA----CCA-GAAG--TGG-TAAATGAGTTACATAGACTTACA----TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATATCGAGAGAATCAGGATTCAA-TTGATGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAAAAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGAC-AAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACATTA-GTACACCTTTCCGTAGACAAAGAGAAGA-TACTTGGATTAGGAAACTACGGCACTGCCTT-C-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTACAA-CA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-TC-ACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTT-TTGA-TGAATTA-C-AAGAAAAAATTAAAG-TAAGTCT--TAC--TTGGATCC----CAA-CACC-G----AC---------AT-AC---A-GGGACTTA---TTATATAAT-GGGGATGTTGCT-CATCACA-A-CTCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG-A-TCGATGCTAGTCAACATTAACACAATTCC-TCAA-CCATAACAAAAGTA-CATCCT-TATT-CGCCTTACTT--AGAG-AAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATATTG-AACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCA-TTTCAATATTAG-TCCGCTGCTGTATATTA--ATTA-CGGGGGATATAAATCTATAGTCCTAAATGAGGATCTC-AATCCCTTAATTTTGAAA-GGTCCTAA-ATTTCC-GAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC---TGGACA----AAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAAT-GA-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA--CGA-TTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-GTTT----AGAAA----CCA-AAGG--AGG--AAATGTTTTACATAGAC-AACA----TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCCAAGAATCA-GACTCAATTTGAT-TACCATA-CCTT----ATTTGA--TCCGAAATGC-CAT------TAAACCCTTACAAACAAA-ATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CC-AAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGATTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACTGGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTTAGAA-GCATAGGGA--ATATTTCTAATCTA-CAGTGTAACAATGTAAATGT---GAT----GGGATTTTT--TCC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTACAA
gi|12 : aggtacattaagtacattaGTACACCTTTCCGTAGGCAACGAGAAGcatgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggaatattatagccaaaagattTAAATGTTGGGATTGGGGGACTTTTT--TCTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTCAG-CACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACTC-ACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTT-G--A--GCATTAAT-AACGAAAAACTAAAGATAAGGATCATAC--TCGG-TCCGT-GCAA-AACT-G----GTGTCAAAGTCAT--C---A-G--ACTTGAA-TTATAT
gi|3 : GAA------GAA-AT--CATTG----GGT--CCACA-TC-ACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAA---TTTTGT-A-TGAA--------------ACTAAAGCTAGCTGC--CAC--CTGGATTC-C-TCAA-CACC-GG---A----------AT-AC---A-T--ACTTGA--TTATATAATTGGGTATGTTGCC-TATCACACA-CTCTT--TGTTCCACCGCGTATTAATGA--TGAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT--CCTCAATC-ATAA--AAAATACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCATT-AT--TGCAT-CCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTT--GATTATAGTCTCGCTG--GT-CA-TATTATTACGGGGAGATAT-AATATA--GTCT-AAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAAATT---CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT---TGGACA----AAATC-TAAGG-CAG-GAGG-TTGACACTTTGTCTGAATGAATTAACGAtttctttggga
gi|5 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatT-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTT-GT-ATTGAATTG-CGAAGAAAAACTTAAAGATAAGG-C--CACT-TTGGATTTCCGTCTA-CACCGG----A----------ATGACTCAA-G--AC-TGA--TTATATGATTAGcgacggatataa
gi|8 : AACGT-T--TC-TG-TCCC------TTTGAAAAA---TTT-G--A-TGAATT--C-AAGAAAGACTTAAAGCTA---GC--TCCCATTAGTTTC-C-TCAATCACC-GGGATA----------GT-GC---AGG--ACTTG-TTTTATA
gi|10 : cattggatccAAAAAACTAAAGCTTGCTGC--CAC--TTGGTTTC-C-TCCA-CACCGG----A----------AT-AC---A-G--ACTTAA--CTATATAg
gi|14 : AACTAGAGATAGGACC--TAC--TTGGATTC-C-TCAA-CACCAG----A----------AT-AC---A-G--
gi|11 : -G----G----------AT-AC---A-G--GCCTGAATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|15 : TGGGGATGTTGCT-CATCACAGA-CTATT--TGTT
gi|3 : aaGATGCT-GTTAATGTTAACAGCAT--C-
gi|9 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTG-ATTTCAAATCTTGAGGTGAGAGAActcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|17 : GAATACGCCAGGCGT---TGGACA----AAATC-TG
gi|7 : A-TCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTGTTTTGGAAGAAAGACACCAAGCAGATCGGATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTC
gi|6 : AAAATC----ACCTTTTTGTTTT-AAATAGTTTCAATTT-----GAATTA-----C------------CACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA---------------AAACAAAAATACT-TTGCTGAT-TCCA-GT-AAGTGCTCT---ACTAAGCCTATTTCTTTACTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATTAACTTTTTCTTAATATAGATTCAATTTGAATTACCATACCTTTATTG
Unaligned ( gi|16 ): TGTATTCCGCCTTACTTTAAGATGAAAT
Alignments
lowQualScore : 22 1 22 2 1 1 11 11 1 1 2 11111 222 11 2222222222 11 22222222 11 3333333 11 11 222 1 2 22 33 1 2 2 333333333333333333 1 11 1111 11 1 111111 111 1111 1111 1111 33333333333333333 1111 11 111 333 11 1 33 33 2 11 11 22 11 22 1 2 22 2 1 2 2 33 11 2 4444 33333 22 1111 111 33 55555555 2 2 1 1 1 11 1 111 11111 1 11 1 222 1 333 1 1 33333 1 11 1 11 11 222 3333 22222222 11 22222222222 2 2 11 1 1 11 11 1 1 1 333 2 11 1 1 1 333 22 333 2222 2222 1 1 111 1 22222 22 111 4444444444 2222 22 2 1 11 222 333 222 22
lowQualScore : 3 77 5 77 0 5 7 3 1 33 22 0 7 4 2 3 1 00000 11 6 333 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 3 0 22 00 1 2 11 0 3 3 1 666666666666666666 0 33 8 7777 11 1 3 8 8 0 8 8 6 1 6 999 999999 6 111 4444 6 5555 5 99 66 5 3 5 4444 5 55555555555555555 4 777 4 66 5555 7 8 5 8 11 1 7 888 1 1 1 1 0 6 7 0 666 1 1 33 3 1 6 3 11 88 7 0 1 2 2 3 33 33 7 22 11 7 6 44 22 4 1 3 1 11 3 2 3 7 7 88 44 7 88 3 0 0 0 6666 22 6 55555 7 7 00 9999 222 7 6 00 1 7 22222222 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 2 2 7 333 1 5 555 4 5 5 88888 1 22 0 33 0 33 33 7 999 6666 88888888 44 22 55555555555 4 3 0 0 88 5 5 88 88 5 4 5 5 3 555 0 77 5 4 3 5 5 555 77 3 555 8888 7 88 1 7 1 9999 0 0 9 111 2 2 0 55555 1 00 22 0 444 7777777777 6 7 1111 44 3 3 33 444 1 0 7 555 2 4 111 3 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . ..... .. . ... . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . .. .. . . .. . . . . .................. . .. . .... .. . . . . . . . . . . ... ...... . ... .... . .... . .. .. . . . .... . ................. . ... . .. .... . . . . .. . . ... . . . . . . . . ... . . .. . . . . .. .. . . . . . . .. .. . .. .. . . .. .. . . . . .. . . . . . .. .. . .. . . . . .... .. . ..... . . .. .... ... . . .. . . ........ . . . . . . . .. . . . . ... ..... . .. . . . ... . . ... . . . ..... . .. . .. . .. .. . ... .... ........ .. .. ........... . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... .... . .. . . . .... . . . ... . . . ..... . .. .. . ... .......... . . .... .. . . .. ... . . . ... . . ... . ..
lowQualScore : 0 55 5 55 0 5 3 3 0 88 55 2 3 0 0 7 0 77777 77 7 000 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 3 7 33 33 0 0 77 7 7 7 0 444444444444444444 0 88 0 0000 00 0 2 0 0 6 0 0 7 7 7 555 222222 7 777 8888 7 8888 9 22 99 0 6 0 0000 0 44444444444444444 4 888 4 11 9999 3 0 0 0 00 0 3 333 0 0 0 0 7 7 3 7 777 0 0 33 3 0 0 7 77 77 3 3 0 5 5 2 22 33 3 00 77 3 7 00 77 0 0 7 0 33 3 3 3 0 3 77 00 3 00 3 7 7 7 3333 00 7 00000 3 3 77 3333 333 3 7 77 0 3 33333333 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 2 3 3 333 0 5 000 0 0 5 00000 0 00 0 88 0 88 22 3 000 0000 77777777 77 00 33333333333 0 0 0 0 00 5 5 00 55 5 0 0 0 0 000 0 55 0 0 0 5 5 000 55 0 000 3333 3 00 0 3 0 7777 0 5 2 000 5 0 0 99999 0 77 00 7 000 7777777777 7 3 0000 33 3 3 33 777 0 7 3 000 5 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAATA-CTGGATTAGGAAACTACGGCACTGCCTT-CCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTACAA-CA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGA------ATAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACT-CTG-TCCC------TTTG-AAAA---TTT-GT-A-TGAATT-AC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACC-G----A----------AT-AC---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTT---GAAAATAAAGGAATCGATGCT-GTCAACATTAACANCATC-CTCAA--CATAACAAAAGTAC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTC-ATATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTAC-AAACA-GACGTTG-CAGTGCCTAGATATT-GAACAATTACAACG--AATCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTT--AATTATAGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAAA-T-TCC-GAGAACCTCGCTCAT-TTAAAT-GGCGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGAA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTT--AAGAAA---ACCAAG-GGA-CGGATAAATGAGTTACATAGACTT-CAACATTAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAATACTTTCAATATC--GAGAATCA-GATTCAATTTGA-T-TACCATA-CCTTTAA--TTGGA-TTCCGAAATGCGCATAA----TAA-CCCTTA-AAACAAAAATACAGTCGCTGAG-TCCA-GT-AAGTGCTCCTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAATANCTGGATTAGGAAACTACGGCACTGCCTTTCCATATGGNTGCAATNNGNNANGTTGGGAAGCATAGGGACAATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGACTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTACAA-CACAACCCATTCAATACAACTGATGTNTCCTNCGACCTCTCTTTATANCATTTCATTTGGA------ATAA-AC--CAT-G----GGT--CNCCA-T-CACATTTCGC-AC-CAAACTT-TACT-CTG-TCCC------TTTG-AAAA---TTT-GT-A-TGAATT-AC-AAGAAAAAACTAAAGNTAGGNGCC--AC-TTGGATTC-C--T-CAA-CACC-G----A----------AT-AC---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCNCGTATTAATGATACGAGNGTGAANTCCAGAAACNTCGCCGNTCCCGACATCTCAAGTTTGGGGANAATNAAGGAATCGATGCT-GTTAACGTTAACAGCAT--CTCAATCCATAACAAAAGTACCGTCNTGTATTCCGCCTTACTTTAAGANGAAATCCACACCTTGTATTTTCAANGTAGATATAATTCCACTTATTACGCANTCCAAGTTNTATTNATTACNAAACAGGACATTGCCAGTGCCTAGATATTNGAACAATTACAACGGAAATCCTCCAAAGTGTACATGTGTCCTCTCCCCCGTTTTCGATNNTAGTCCCGCTGCTGTACATTATTATTACNGGGGGATATAAATNTATAGTCCTAAATGAGGATCTCAAGTCCCTTAATTTTNAAAAGGTCCTAAANTTTCCTGAGAACCTCGCTCATCTTAAATGGGCGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGGCGC-TG---GA---CAAAATCTTGAGG-GAGAGAAGATTGACACTTTGTCTGAATGGATTAANGAGTAATTCGGA---TTAATAAAATCCCGATATTCAGCCNAATTNANNGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTGGAAGAAAGACACCAAGCGGATNGGATAAATGNNTTACATAGACTNNCAATATTGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACANTTTCAATNTTCCAAGAATCA-GACTCAATTTGA-T-TACCACA-CCTTTAA--TTNGA-TTNNGAAGTGCGCATAA----TAAACCCTTACAAACAAAAATACNGTCGCTGANCTCCACGT-AAGTGCTCCTANCTAAGCCTNTTTCTCTACTTTTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACTGGATTAGGAAACTATGGCACTGCCTT-CCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA--ATATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTAT--AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGA------ATAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACT-CTG-TACC------TTTG-ACAA---TTT-GT-A-TGAATT-AC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----A----------AT-AC---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTT---GAAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA--CATAACAAAAGTAATGTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTC-ATATAGATATAATTCCAC-TAT--CGCATTCCAAGTTAT-TTAATTAC-AAACA-GACGTTG-CAGTGCCTAGATATTTTAACAATTACAACG--AATCCTCCAAAGTGTACATAT-TCCTCTTCCTCATT---AATTATAGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAA--TATC--GAGAACCTCGCTCAT-TTAAAT-GGCGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGAG-CTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTT-TAAGAA----ACCA---GAAGTGG-TAAATGAGTTACATAGACTTACA----TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATATCGAGAGAATCAGGATTCAA-TTGA-TGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAAAAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----A----------AT-AC---A-G--ACTTA-A--CTATATA
gi|11 : -G----G----------AT-AC---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattA-GATTCAATTTGAAT-TACCATA-CCTTTA
gi|14 : attaactttttcttaatatAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----A----------AT-AC---A-G--ttg
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-TACTTGGATTAGGAAACTACGGCACTGCCTT--CATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTACAA-CA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GA------ATAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACT-CTGGTCCCCCCCCATTTG-AAAA---TTT-TTGA-TGAATT-AC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACC-G----AC---------AT-AC---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGTAC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATATT-GAACA--TACAACG-AAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTT-CAATATTAGTCC-GCTGCTGTATATTA--ATTAC-GGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAAA-TTTCC-GAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTGAC--TTTGTCTGAATGA--TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-GTTT----AGAAA----CCAAA-GGA--GGA--AATGTTTTACATAGAC----AACAT-GAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCCAAGAATCA-GACTCAATTTGA-T-TACCATA-CCTT--A--TTTGA--TCCGAAATGC-CAT------TAAACCCTTACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTACC-AAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAATA-CTGGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGGG--AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTACAA-CA
gi|3 : aggtacattaagtacattaGA------AGAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCT-CTG-TTCC------TTTG-AAAA---TTTTGT-A-TGAA--------------ACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACC-GG---A----------AT-AC---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTT---GACAATAAAGGAATCGATGCT-GTTAACATTAACAGCATC-CTCAAT-CATA--AAAAATACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTC--ATGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACT-AACA-GACATTG-CAGTGCCTAGATATT-GAACAATTACAATGG-AATCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTT--GATTATAGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAAATT---CTGAGAACCTTGCTCAT-TTAAAT-GGCGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTCAG-CACAACCCATTCAATACAACTGATGTGT-CTACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTT-G--A--GCATTAAT-AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACT-G----GTGTCAAAGTCAT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACT-CTG---CC------TTTG-AAAATTCTTT-GT-ATTGAATT-GCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----A----------ATGACTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA-TAGTTTCAATTT------------GA---------A-T-TACCACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA---------------AAACAAAAATACT-TTGCTGAT-TCCA-GT-AAGTGCTC-TA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTGTTTTGGAAGAAAGACACCAAGCAGATCGGATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--T-CTG-TCCC------TTTGAAAAA---TTT-G--A-TGAATT--C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACC-GGGATA----------GT-GC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg
Alignments
lowQualScore : 11 1 11 1 1 1 11 11 1 1 1 1 111 11 2222222222 11 22222222 11 3333333 11 11 222 1 1 1 111 1 1 22222222 222222 1 11 1111 11 1 111111 111 1111 1111 1111 33333333333333333 1111 11 111 222 11 1 22 111 1 1 11 111 1 11 22 2 1 1 1 1 1 1 1 1 11 1 1 11 1 1111 111 11 1 22 1 1 1 1 1 11 1 111 11111 1 11 111 1 222 1 1 22222 1 11 1 11 11 333333333333 444444444444 33333 2 1 1 11 1 1 11 11 1 1 1 222 1 11 1 1 1 222 11 222 22222 6666666666666666666 1 222 1 22222 22 111 8888888888888888 1111 1 1 1 11 1 222 111 11
lowQualScore : 1 88 5 88 5 5 7 3 1 33 22 0 7 3 3 2 3 6 1 77 6 666 7 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 0 7 3 999 1 6 0 3 3 55555555 888888 0 33 8 7777 11 3 8 8 0 8 8 6 1 6 999 999999 6 888 7777 6 7777 5 77 66 5 3 5 4444 5 55555555555555555 4 777 4 66 5555 7 8 5 8 11 7 888 7 333 33 3 1 00 666 7 3 3 2 2 3 55 33 333 3 7 6 44 7 00 6 3 3 3 2 3 3 7 3 3 44 7 7 3 88 4 3 6 88 3 7 7 6 6 7777 222 7 6 88 7 3 00 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 6 7 666 5 111 1 5 5 88888 3 0 33 0 33 33 7 777777777777 333333333333 00000 3 1 1 5 5 88 5 5 88 88 5 1 5 5 1 111 5 77 5 1 2 5 5 111 88 1 111 99999 7 2222222222222222222 0 3 111 2 0 99999 00 444 2222222222222222 7 9999 3 3 3 33 3 7 000 1 1 999 1 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . . . .. . ... . . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . . ... . . . . . ........ ...... . .. . .... .. . . . . . . . . . ... ...... . ... .... . .... . .. .. . . . .... . ................. . ... . .. .... . . . . .. . ... . ... .. . . .. ... . . . . . . .. .. ... . . . .. . .. . . . . . . . . . . .. . . . .. . . . .. . . . . . .... ... . . .. . . .. . . . . . . . .. . . . . ... ..... . .. . . ... . ... . . . ..... . . .. . .. .. . ............ ............ ..... . . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... ..... . ................... . . ... . . ..... .. ... ................ . .... . . . .. . . ... . . ... . ..
lowQualScore : 0 00 5 55 5 5 3 3 0 88 55 2 3 3 3 0 3 7 0 77 7 777 3 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 0 3 3 000 0 7 7 3 3 00000000 888888 0 88 0 0000 00 2 0 0 6 0 0 7 7 7 555 222222 7 333 5555 7 8888 9 44 99 0 6 0 0000 0 44444444444444444 4 888 4 11 9999 3 0 0 0 00 3 333 3 333 33 3 0 00 777 3 3 3 5 5 2 88 33 777 3 3 7 00 3 00 7 3 3 3 0 3 3 3 3 3 00 3 3 3 00 0 3 7 33 3 3 3 7 7 3333 333 3 7 33 3 3 77 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 7 3 777 5 555 0 0 5 77777 7 0 88 0 88 22 3 333333333333 000000000000 00000 7 0 0 0 5 00 5 5 00 55 5 0 0 0 0 555 0 55 0 0 5 5 5 000 55 0 555 00000 3 3333333333333333333 0 2 000 5 0 55555 77 000 0000000000000000 3 0000 3 3 3 33 3 3 555 0 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----A----------AT-AC---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTT---AGGAA---ACCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAAT-TACCATA-CCTTTAA--TTGGA-TTCCGAAATGCGCATAA-----AA-CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCTCCTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACC-G----A----------AT-AC---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTAATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGAA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTT--AAGAAA---ACCAAG-GGA-CG-GATAAATGAGTTACATAGACTT-CAACATTAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAATACTTTCAATAT--C--GAGAATCA-GATTCAATTTGA-T-TACCATA-CCTTTAA--TTGGA-TTCCGAAATGCGCATAA----TAA-CCCTT-A-AAACAAAAATACAGTCGCTGAG-TCCA-GT-AAGTGCTCCTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACT-GGATTAGGAAACTATGGCACTGCC-TTCCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA-A-TATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTA-T-AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----A----------AT-AC---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA-C-ATAACAAAAGTAAT-GTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTCA-TATAGATATAATTCCAC-TA-T-CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TTAATTAT-AGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---CGAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGA-GCTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTT--TAAGAA---ACCA----GA-AGTGGTAAATGAGTTACATAGACTT---ACA-TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATAT--CGAGAGAATCAGGATTCAA-TTGA-TGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAA-AAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----A----------AT-AC---A-G--ACTTA-A--CTATATA
gi|11 : -G----G----------AT-AC---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattA-GATTCAATTTGAAT-TACCATA-CCTTT-A--TTG
gi|14 : attaactttttcttaatatAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----A----------AT-AC---A-G--
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-T-ACTTGGATTAGGAAACTACGGCACTGCC-TTC-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTAC-AACA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTTT--TGA-TGAATTAC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACC-G----AC---------AT-AC---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGT-AC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATA-TTGAACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTTCAATATTAGTCC-GCTGCTGTATATTA--ATTACGGGGG-ATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAA-ATTTCCGAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAATG-A-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-GTTT----AG-AA---ACCAAA-GGA--G-G--AAATGTTTTACATAGA----CAACA-TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCC--AAGAATCA-GACTCAATTTGA-T-TACCATA-CCTT--A--TTTGA--TCCGAAATGC-CATTA-----AA-CCCTT-ACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CCAAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGG-G-AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTAC-AACA-
gi|3 : aggtacattaagtacattaGAA------GAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAAT--TTTG--T-A-TG-------------AAACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACCGG----A----------AT-AC---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT-CCTCAATC-ATA--AAAAAT-ACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTTGATTAT-AGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAA-ATT-CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTC-AGCACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTTGAGC-A-TTAAT----AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACT-G----GTGTCAAAGTCAT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTTG--T-ATTGAATTGCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----A----------ATGACTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA------------------------TA-GTTTCAATTTGAAT-TACCACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA----------------AAACAAAAATAC-TTTGCTGAT-TCCA-GT-AAGTGCTC-TA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTGTTTTGGAAGAAAGACACCAAGCAGATCG-GATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--TC-TG-TCCC------TTTGAAAAA---TTTG----A-TGAATT-C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACC-GGGATA----------GT-GC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg
Alignments
lowQualScore : 11 1 11 1 1 1 11 11 1 1 1 1 111 11 2222222222 11 22222222 11 3333333 11 11 222 1 1 1 111 1 1 22222222 222222 1 11 1111 11 1 111111 111 1111 1111 1111 111 1111 11 111 222 11 1 22 111 1 1 11 111 1 11 22 2 1 1 1 1 1 1 1 1 11 1 1 11 1 1111 111 11 1 22 1 1 1 1 1 11 1 111 11111 1 11 1 1 222 1 1 22222 1 11 1 11 11 1 33333 2222 222222222222 33333 1 1 1 11 1 1 11 11 1 1 1 222 1 11 1 1 1 222 11 222 22222 11 11 6666666666666666 1 22222 22 111 55555555555555555 1111 1 1 1 2 1 222 111 11
lowQualScore : 1 88 5 88 5 5 7 3 1 33 22 0 7 3 3 2 3 6 1 77 6 666 7 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 0 7 3 999 1 6 0 3 3 55555555 888888 0 33 8 7777 11 3 8 8 0 8 8 6 1 6 999 999999 6 888 7777 6 7777 5 77 66 5 3 5 4444 5 9999 777 4 222 777 4 66 5555 7 8 5 8 11 7 888 7 333 33 3 1 00 666 7 3 3 2 2 3 55 33 333 3 7 6 44 7 00 6 3 3 3 2 3 3 7 3 3 44 7 7 3 88 1 3 6 88 3 7 7 6 6 7777 222 7 6 88 7 3 00 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 6 7 6 3 5 111 1 5 5 88888 3 0 33 0 33 33 7 3 00000 8888 999999999999 00000 3 1 1 5 5 88 5 5 88 88 5 1 5 5 1 111 5 77 5 1 2 5 5 111 88 1 111 99999 7 11 33 7777777777777777 3 3 2 0 99999 00 444 99999999999999999 7 6666 3 3 3 3 3 7 000 1 1 999 1 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . . . .. . ... . . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . . ... . . . . . ........ ...... . .. . .... .. . . . . . . . . . ... ...... . ... .... . .... . .. .. . . . .... . .... ... . ... ... . .. .... . . . . .. . ... . ... .. . . .. ... . . . . . . .. .. ... . . . .. . .. . . . . . . . . . . .. . . . .. . . . .. . . . . . .... ... . . .. . . .. . . . . . . . .. . . . . ... ..... . .. . . . . . ... . . . ..... . . .. . .. .. . . ..... .... ............ ..... . . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... ..... . .. .. ................ . . . . ..... .. ... ................. . .... . . . . . . ... . . ... . ..
lowQualScore : 0 00 5 55 5 5 3 3 0 88 55 2 3 3 3 0 3 7 0 77 7 777 3 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 0 3 3 000 0 7 7 3 3 00000000 888888 0 88 0 0000 00 2 0 0 6 0 0 7 7 7 555 222222 7 333 5555 7 8888 9 44 99 0 6 0 0000 0 4444 888 4 222 888 4 11 9999 3 0 0 0 00 3 333 3 333 33 3 0 00 777 3 3 3 5 5 2 88 33 777 3 3 7 00 3 00 7 3 3 3 0 3 3 3 3 3 00 3 3 3 00 0 3 7 33 3 3 3 7 7 3333 333 3 7 33 3 3 77 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 7 3 7 3 5 555 0 0 5 77777 7 0 88 0 88 22 3 3 33333 3333 777777777777 00000 3 0 0 0 5 00 5 5 00 55 5 0 0 0 0 555 0 55 0 0 5 5 5 000 55 0 555 00000 3 00 88 0000000000000000 2 2 5 0 55555 77 000 33333333333333333 3 3333 3 3 3 3 3 3 555 0 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTGA--GAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTT-A--TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTAG--GAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTAA--TTGGA-TTCCGAAATGCGCATAAAA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCTCCTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACT-GGATTAGGAAACTATGGCACTGCC-TTCCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA-A-TATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTA-T-AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----AA---T-A---C---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA-C-ATAACAAAAGTAAT-GTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTCA-TATAGATATAATTCCAC-TA-T-CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TTAATTAT-AGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---CGAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGA-GCTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTTAA--GAAA----CCA---GAA--GTGGTAAATGAGTTACATAGACTT---ACA-TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATAT--CGAGAGAATCAGGATTCAA-TTGATGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAA-AAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----AA---T-A---C---A-G--ACTTA-A--CTATATA
gi|11 : G----GA---T-A---C---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattCTT--AATAT------------A-GATTCAATTTGAATTACCATA-CCTTT-A--TTG
gi|14 : attaactttttAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----AA---T-A---C---A-G--
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-T-ACTTGGATTAGGAAACTACGGCACTGCC-TTC-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTAC-AACA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTTT--TGA-TGAATTAC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACCGA----CA---T-A---C---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGT-AC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATA-TTGAACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTTCAATATTAGTCC-GCTGCTGTATATTA--ATTACGGGGG-ATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAA-ATTTCCGAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAAT-GA-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-G-TTT--A--GAAA----CCAAA-GGA--G-G--AAATGTTTTACATAGA----CAACA-TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCC--AAGAATCA-GACTCAATTTG-ATTACCATA-CCTT--A--TTTGA--TCCGAAATGC-CATTAAA------CCCTT-ACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CCAAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGG-G-AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTAC-AACA-
gi|3 : aggtacattaagtacattaGAA------GAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAAT--TTTG--T-A-TG-------------AAACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT-CCTCAATC-ATA--AAAAAT-ACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTTGATTAT-AGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAA-ATT-CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTC-AGCACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTTGAGC-A-TTAAT----AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACTGGTGTCAAAGTC-AT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTTG--T-ATTGAATTGCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----AA---TGA---CTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA-----T--AGT------------------TTCAATTTGAATTACCACA-CCTTT-A--TTGGA-TTAGGAAGT-TGCATA---------------A-AAACAAAAATAC-TTTGCTGAT-TCCA-GT-AAGTGCT-CTA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTG-TTTTGGAAGAAAGACACCAAGCAGATCG-GATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--TC-TG-TCCC------TTTGAAAAA---TTTG----A-TGAATT-C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACCGG----GA---T-AGTGC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg
Alignments
lowQualScore : 11 1 11 1 1 1 11 11 1 1 1 1 111 11 2222222222 11 22222222 11 3333333 11 11 222 1 1 1 111 1 1 22222222 222222 1 11 1111 11 1 111111 111 1111 1111 1111 111 1111 11 111 222 11 1 22 111 1 1 11 111 1 11 22 2 1 1 1 1 1 1 1 1 11 1 1 11 1 1111 111 11 1 22 1 1 1 1 1 11 1 111 11111 1 11 1 1 222 1 1 22222 1 11 1 11 11 1 2222 2222 222222222222 33333 1 1 1 11 1 1 11 11 1 1 1 222 1 11 1 1 1 222 11 222 22222 11 11 6666666666666666 1 111 22 111 6666666666666666 1111 1 1 1 1 1 222 111 11
lowQualScore : 1 88 5 88 5 5 7 3 1 33 22 0 7 3 3 2 3 6 1 77 6 666 7 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 0 7 3 999 1 6 0 3 3 55555555 888888 0 33 8 7777 11 3 8 8 0 8 8 6 1 6 999 999999 6 888 7777 6 7777 5 77 66 5 3 5 4444 5 9999 777 4 222 777 4 66 5555 7 8 5 8 11 7 888 7 333 33 3 1 00 666 7 3 3 2 2 3 55 33 333 3 7 6 44 7 00 6 3 3 3 2 3 3 7 3 3 44 7 7 3 88 1 3 6 88 3 7 7 6 6 7777 222 7 6 88 7 3 00 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 6 7 6 3 5 111 1 5 5 88888 3 0 33 0 33 33 7 3 9999 8888 999999999999 00000 3 1 1 5 5 88 5 5 88 88 5 1 5 5 1 111 5 77 5 1 2 5 5 111 88 1 111 99999 7 11 33 7777777777777777 3 3 2 0 3 777 00 444 8888888888888888 7 6666 3 3 3 3 3 7 000 1 1 999 1 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . . . .. . ... . . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . . ... . . . . . ........ ...... . .. . .... .. . . . . . . . . . ... ...... . ... .... . .... . .. .. . . . .... . .... ... . ... ... . .. .... . . . . .. . ... . ... .. . . .. ... . . . . . . .. .. ... . . . .. . .. . . . . . . . . . . .. . . . .. . . . .. . . . . . .... ... . . .. . . .. . . . . . . . .. . . . . ... ..... . .. . . . . . ... . . . ..... . . .. . .. .. . . .... .... ............ ..... . . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... ..... . .. .. ................ . . . . . ... .. ... ................ . .... . . . . . . ... . . ... . ..
lowQualScore : 0 00 5 55 5 5 3 3 0 88 55 2 3 3 3 0 3 7 0 77 7 777 3 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 0 3 3 000 0 7 7 3 3 00000000 888888 0 88 0 0000 00 2 0 0 6 0 0 7 7 7 555 222222 7 333 5555 7 8888 9 44 99 0 6 0 0000 0 4444 888 4 222 888 4 11 9999 3 0 0 0 00 3 333 3 333 33 3 0 00 777 3 3 3 5 5 2 88 33 777 3 3 7 00 3 00 7 3 3 3 0 3 3 3 3 3 00 3 3 3 00 0 3 7 33 3 3 3 7 7 3333 333 3 7 33 3 3 77 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 7 3 7 3 5 555 0 0 5 77777 7 0 88 0 88 22 3 3 3333 3333 777777777777 00000 3 0 0 0 5 00 5 5 00 55 5 0 0 0 0 555 0 55 0 0 5 5 5 000 55 0 555 00000 3 00 88 0000000000000000 2 2 5 0 2 555 77 000 0000000000000000 3 3333 3 3 3 3 3 3 555 0 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACT-GGATTAGGAAACTATGGCACTGCC-TTCCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA-A-TATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTA-T-AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----AA---T-A---C---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA-C-ATAACAAAAGTAAT-GTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTCA-TATAGATATAATTCCAC-TA-T-CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TTAATTAT-AGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---CGAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGA-GCTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTTA--AGAAA----CCA---GAA--GTGGTAAATGAGTTACATAGACTT---ACA-TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATAT--CGAGAGAATCAGGATTCAA-TTGATGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAA-AAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----AA---T-A---C---A-G--ACTTA-A--CTATATA
gi|11 : G----GA---T-A---C---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattCTT--AATAT------------A-GATTCAATTTGAATTACCATA-CCTTTA---TTG
gi|14 : attaactttttAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----AA---T-A---C---A-G--
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-T-ACTTGGATTAGGAAACTACGGCACTGCC-TTC-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTAC-AACA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTTT--TGA-TGAATTAC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACCGA----CA---T-A---C---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGT-AC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATA-TTGAACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTTCAATATTAGTCC-GCTGCTGTATATTA--ATTACGGGGG-ATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAA-ATTTCCGAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAAT-GA-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-G-TTT----AGAAA----CCAAA-GGA--G-G--AAATGTTTTACATAGA----CAACA-TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCC--AAGAATCA-GACTCAATTTG-ATTACCATA-CC-TTA---TTTGA--TCCGAAATGC-CATTAAA------CCCTT-ACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CCAAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGG-G-AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTAC-AACA-
gi|3 : aggtacattaagtacattaGAA------GAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAAT--TTTG--T-A-TG-------------AAACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT-CCTCAATC-ATA--AAAAAT-ACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTTGATTAT-AGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAA-ATT-CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTC-AGCACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTTGAGC-A-TTAAT----AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACTGGTGTCAAAGTC-AT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTTG--T-ATTGAATTGCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----AA---TGA---CTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA-----T--AGT------------------TTCAATTTGAATTACCACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA----------------AAACAAAAATAC-TTTGCTGAT-TCCA-GT-AAGTGCT-CTA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTG-TTTTGGAAGAAAGACACCAAGCAGATCG-GATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--TC-TG-TCCC------TTTGAAAAA---TTTG----A-TGAATT-C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACCGG----GA---T-AGTGC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg
Alignments
lowQualScore : 11 1 11 1 1 1 11 11 1 1 1 1 111 11 2222222222 11 22222222 11 3333333 11 11 222 1 1 1 111 1 1 22222222 222222 1 11 1111 11 1 111111 111 1111 1111 1111 111 1111 11 111 222 11 1 22 111 1 1 11 111 1 11 22 2 1 1 1 1 1 1 1 1 11 1 1 11 1 1111 111 11 1 22 1 1 1 1 1 11 1 111 11111 1 11 1 1 222 1 1 22222 1 11 1 11 11 1 2222 2222 222222222222 33333 1 1 1 11 1 1 11 11 1 1 1 222 1 11 1 1 1 222 11 222 22222 11 11 6666666666666666 1 111 22 111 6666666666666666 1111 1 1 1 1 1 222 111 11
lowQualScore : 1 88 5 88 5 5 7 3 1 33 22 0 7 3 3 2 3 6 1 77 6 666 7 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 0 7 3 999 1 6 0 3 3 55555555 888888 0 33 8 7777 11 3 8 8 0 8 8 6 1 6 999 999999 6 888 7777 6 7777 5 77 66 5 3 5 4444 5 9999 777 4 222 777 4 66 5555 7 8 5 8 11 7 888 7 333 33 3 1 00 666 7 3 3 2 2 3 55 33 333 3 7 6 44 7 00 6 3 3 3 2 3 3 7 3 3 44 7 7 3 88 1 3 6 88 3 7 7 6 6 7777 222 7 6 88 7 3 00 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 6 7 6 3 5 111 1 5 5 88888 3 0 33 0 33 33 7 3 9999 8888 999999999999 00000 3 1 1 5 5 88 5 5 88 88 5 1 5 5 1 111 5 77 5 1 2 5 5 111 88 1 111 99999 7 11 33 7777777777777777 3 3 2 0 3 777 00 444 8888888888888888 7 6666 3 3 3 3 3 7 000 1 1 999 1 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . . . .. . ... . . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . . ... . . . . . ........ ...... . .. . .... .. . . . . . . . . . ... ...... . ... .... . .... . .. .. . . . .... . .... ... . ... ... . .. .... . . . . .. . ... . ... .. . . .. ... . . . . . . .. .. ... . . . .. . .. . . . . . . . . . . .. . . . .. . . . .. . . . . . .... ... . . .. . . .. . . . . . . . .. . . . . ... ..... . .. . . . . . ... . . . ..... . . .. . .. .. . . .... .... ............ ..... . . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... ..... . .. .. ................ . . . . . ... .. ... ................ . .... . . . . . . ... . . ... . ..
lowQualScore : 0 00 5 55 5 5 3 3 0 88 55 2 3 3 3 0 3 7 0 77 7 777 3 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 0 3 3 000 0 7 7 3 3 00000000 888888 0 88 0 0000 00 2 0 0 6 0 0 7 7 7 555 222222 7 333 5555 7 8888 9 44 99 0 6 0 0000 0 4444 888 4 222 888 4 11 9999 3 0 0 0 00 3 333 3 333 33 3 0 00 777 3 3 3 5 5 2 88 33 777 3 3 7 00 3 00 7 3 3 3 0 3 3 3 3 3 00 3 3 3 00 0 3 7 33 3 3 3 7 7 3333 333 3 7 33 3 3 77 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 7 3 7 3 5 555 0 0 5 77777 7 0 88 0 88 22 3 3 3333 3333 777777777777 00000 3 0 0 0 5 00 5 5 00 55 5 0 0 0 0 555 0 55 0 0 5 5 5 000 55 0 555 00000 3 00 88 0000000000000000 2 2 5 0 2 555 77 000 0000000000000000 3 3333 3 3 3 3 3 3 555 0 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACT-GGATTAGGAAACTATGGCACTGCC-TTCCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA-A-TATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTA-T-AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----AA---T-A---C---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA-C-ATAACAAAAGTAAT-GTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTCA-TATAGATATAATTCCAC-TA-T-CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TTAATTAT-AGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---CGAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGA-GCTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTTA--AGAAA----CCA---GAA--GTGGTAAATGAGTTACATAGACTT---ACA-TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATAT--CGAGAGAATCAGGATTCAA-TTGATGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAA-AAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----AA---T-A---C---A-G--ACTTA-A--CTATATA
gi|11 : G----GA---T-A---C---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattCTT--AATAT------------A-GATTCAATTTGAATTACCATA-CCTTTA---TTG
gi|14 : attaactttttAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----AA---T-A---C---A-G--
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-T-ACTTGGATTAGGAAACTACGGCACTGCC-TTC-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTAC-AACA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTTT--TGA-TGAATTAC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACCGA----CA---T-A---C---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGT-AC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATA-TTGAACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTTCAATATTAGTCC-GCTGCTGTATATTA--ATTACGGGGG-ATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAA-ATTTCCGAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAAT-GA-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-G-TTT----AGAAA----CCAAA-GGA--G-G--AAATGTTTTACATAGA----CAACA-TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCC--AAGAATCA-GACTCAATTTG-ATTACCATA-CC-TTA---TTTGA--TCCGAAATGC-CATTAAA------CCCTT-ACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CCAAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGG-G-AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTAC-AACA-
gi|3 : aggtacattaagtacattaGAA------GAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAAT--TTTG--T-A-TG-------------AAACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT-CCTCAATC-ATA--AAAAAT-ACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTTGATTAT-AGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAA-ATT-CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTC-AGCACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTTGAGC-A-TTAAT----AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACTGGTGTCAAAGTC-AT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTTG--T-ATTGAATTGCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----AA---TGA---CTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA-----T--AGT------------------TTCAATTTGAATTACCACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA----------------AAACAAAAATAC-TTTGCTGAT-TCCA-GT-AAGTGCT-CTA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTG-TTTTGGAAGAAAGACACCAAGCAGATCG-GATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--TC-TG-TCCC------TTTGAAAAA---TTTG----A-TGAATT-C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACCGG----GA---T-AGTGC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg
blockSeqs : T . A . . T T . A GA AA A . T C T C T GA G AAC A T AA T TGGGATTGGG TA TTATA AC TACACTC TT A G G CA TT . C T C AAC C C T A ATTTCAT GTGAGA T AC T TGGA TA C C G T C T A A C GTC CCCCCA A TTC AGC T TGCG C TG AT T T . GTG T TGTC AGT G GTG TCA G GG AAT T A G T CC A TAC A GGG GG A C TC CC A . A G C T TG CC TAT A T C CT T AC A A A G A C . A G A A T T G AT C T C CT A T T C G ATCT CCT A G AT A . TT C G C A A G C TT T A T TGT TTTC T TG G A G T A . A G T GCCCA G C CT A AA CT T . TGGA GACA AGCAGATCGGA TTTCC T T T . . CA A A CA TT T T G C T . . GG C A T A A . . T . A A AC . ATTCCAAGAATCA T A C . T . T GC AACCCTTAC A AGC C C . . . T . G T TAT A .
blockSeqs : . . C . A . . . . . . G C . G A . A . GAT . ACAT . . . A A G CA TT . . T . A G . . . TT . . . . . . C . . T . . . G . TT . . T TG . TAC A AC . . A . CGT . . . . T . . . AA T . G . . . T . . G . G C TC . . . G C T TG C TA . . . T T . . . . . . . . . . . C . . . GT G . . . . . . C . T CT A . . . . T . . . . . G C . . A . . CA T G G . . . CG T . . . . T . . . . AAGGAGG C . A A . . ATA T A C . T . . TG . . TTT . . . . . .
blockSeqs : G . . GAT . A . . . . . G . . . . . . . . . . T . . . . . . A . TT . . . T . TC C TC . . A . T . . . . . . . . A T . C . . . . . G . . . . . . . . . . CA T . . . . . . . . T . C . . .
blockSeqs : . . . . . . . . . . A . TC . . . T . . A TG . . A . T . . . . . . . . A . . . . . . . CA .
blockSeqs : . . . . . . . . . . A GA . . A . T . . . . . . . . A .
blockSeqs : C TC . . T . T . . . . . . . . A
blockSeqs : . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TC** A*** CA***
originalCons : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
finalCons : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTTG--T-A-TGAATTC--AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTGA---TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GACA---AAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Alignments
lowQualScore : 11 1 11 1 1 1 11 11 1 1 1 1 111 11 2222222222 11 22222222 11 3333333 11 11 222 1 1 1 111 1 1 22222222 222222 1 11 1111 11 1 111111 111 111111 2222 1111 111 1111 11 111 222 11 1 22 111 1 1 11 111 1 11 22 2 1 1 1 1 1 1 1 1 11 1 1 11 1 1111 111 11 1 22 1 1 1 1 1 11 1 111 11111 1 11 1 1 222 1 1 22222 1 11 1 11 11 1 2222 2222 222222222222 33333 1 1 1 11 1 1 11 11 1 1 1 222 1 11 1 1 1 222 11 222 22222 11 11 6666666666666666 1 111 22 111 6666666666666666 1111 1 1 1 1 1 222 111 11
lowQualScore : 1 88 5 88 5 5 7 3 1 33 22 0 7 3 3 2 3 6 1 77 6 666 7 7 44 0 7 2222222222 33 99999999 33 2222222 33 3 6 2 11 333 0 0 7 3 999 1 6 0 3 3 55555555 888888 0 33 8 7777 11 3 8 8 0 8 8 6 1 6 999 999999 6 111 888888 6 8888 5 77 66 5 3 5 4444 5 9999 777 4 222 777 4 66 5555 7 8 5 8 11 7 888 7 333 33 3 1 00 666 7 3 3 2 2 3 55 33 333 3 7 6 44 7 00 6 3 3 3 2 3 3 7 3 3 44 7 7 3 88 1 3 6 88 3 7 7 6 6 7777 222 7 6 88 7 3 00 3 3 0 0 0 2 2 33 0 3 0 8 444 44444 0 22 6 7 6 3 5 111 1 5 5 88888 3 0 33 0 33 33 7 3 9999 8888 999999999999 00000 3 1 1 5 5 88 5 5 88 88 5 1 5 5 1 111 5 77 5 1 2 5 5 111 88 1 111 99999 7 11 33 7777777777777777 3 3 2 0 3 777 00 444 8888888888888888 7 6666 3 3 3 3 3 7 000 1 1 999 1 77
lowQualScore : . .. . .. . . . . . .. .. . . . . . . . . .. . ... . . .. . . .......... .. ........ .. ....... .. . . . .. ... . . . . ... . . . . . ........ ...... . .. . .... .. . . . . . . . . . ... ...... . ... ...... . .... . .. .. . . . .... . .... ... . ... ... . .. .... . . . . .. . ... . ... .. . . .. ... . . . . . . .. .. ... . . . .. . .. . . . . . . . . . . .. . . . .. . . . .. . . . . . .... ... . . .. . . .. . . . . . . . .. . . . . ... ..... . .. . . . . . ... . . . ..... . . .. . .. .. . . .... .... ............ ..... . . . . . .. . . .. .. . . . . . ... . .. . . . . . ... .. . ... ..... . .. .. ................ . . . . . ... .. ... ................ . .... . . . . . . ... . . ... . ..
lowQualScore : 0 00 5 55 5 5 3 3 0 88 55 2 3 3 3 0 3 7 0 77 7 777 3 3 77 7 3 0000000000 88 88888888 88 5555555 88 2 5 5 88 222 0 0 3 3 000 0 7 7 3 3 00000000 888888 0 88 0 0000 00 2 0 0 6 0 0 7 7 7 555 222222 7 777 333333 7 2222 9 44 99 0 6 0 0000 0 4444 888 4 222 888 4 11 9999 3 0 0 0 00 3 333 3 333 33 3 0 00 777 3 3 3 5 5 2 88 33 777 3 3 7 00 3 00 7 3 3 3 0 3 3 3 3 3 00 3 3 3 00 0 3 7 33 3 3 3 7 7 3333 333 3 7 33 3 3 77 3 3 0 0 0 5 5 88 0 2 8 0 000 88888 6 55 7 3 7 3 5 555 0 0 5 77777 7 0 88 0 88 22 3 3 3333 3333 777777777777 00000 3 0 0 0 5 00 5 5 00 55 5 0 0 0 0 555 0 55 0 0 5 5 5 000 55 0 555 00000 3 00 88 0000000000000000 2 2 5 0 2 555 77 000 0000000000000000 3 3333 3 3 3 3 3 3 555 0 0 555 0 55
consensus : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTT-G--T-A-TGAATTAC-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
Reference ( family-1566 ) : CTANGAAAGTGAAGAATATATAGAAAAAATTTAATCATTCAAACCAATAGTC-CAANA--TTAAGTACACCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAACTACGGCACTGCC-TTCCATATGGNTGCAATGAGNAATATTGGGAAGCATAGGAA-AATATTTCTAGTCCAACAGCGTAACAATGTAAATGT--GGAT----GGGCTTTTTT--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATGGACATCG-T-CGTAC-AACA-AACCTATT-AATACG--TGATGTNTCCTTCGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-CACATTTCGC-AC-CAAACTT-TACTC-TG-TCCC------TTTG-AAAA---TTT-G--T-A-TGAATT-C-AAGAAAAAACTAAAGNTAGGTNCC--AC-TTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-G--ACTTG-A--TTATATAATTGGGGATGTTGCT-CATCACAGAC-TCTT--TGTTCCACCTCGTATTAATGATACGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAAGGAATCGATGCT-GTCAACATTAACANCAT-CCTCAA-C-ATAACAAAAGT-AC-GTCCTGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTATTTTCA-TATAGATATAATTCCACTTATT-CGCA-TCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATA-TTGAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCGTTTNATTAT-AGTCCCGCTG--GT-CATTATTATTACGGGGGGATATAAATCTATAGTCCTAAATGAGGATCTCAAGTCCCTTA--TTTGAAAAGGTCCTAA-ATT-CCGAGAACCTCGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-TGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGGTTGACACTTTGTCTGAATGGA-TAACGAGTAATTCGGAAATTTANCAAAATCCCGATATTCA-CCCGATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTG-TTTTG--AGAAA----CCAAG-GGA--G-GGTAAATGAGTTACATAGACTT-CAACA-TAAAANTTNTGTACTGGTTCCAGCTGATATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTNTGTATCAATNGTCTTTTTAAAGTGAACTGGAGGGTTTACCTTCGACANTCGGGAATCACTACTTACACATCCTAAAGCAATTTCACAAAAGATNAAATTCTATGTCAAAATC----GCCTTTCTGTTTTAAAACACTT--AATAT--C--GAGAATCA-GATTCAATTTGAATTACCATA-CCTTTA---TTGGA-TTCCGAAATGCGCATAAGA------CCCTT-A-AAACAAAAATACANTCGCTGAG-TCCA-GT-AAGTGCT-CTA-CCAAGCCTCTTTCTTTACTTTTTGTCCGCTAAACNACTAACNGCTTANCANAAGAATGCTCTTCAGA
gi|1 : CTAGAAAAGTGAAGAAT-TATAGAAAAAATTTAATCAT-CAAACCAATACTCGCAACA--TTAAGTACAACCTTTCGTAGACAACGAGAAGAATGACT-GGATTAGGAAACTATGGCACTGCC-TTCCATATGGATGCAATGAGTAATATTGGAAAGCATAGGAA-A-TATTTCTAGTCCA-CAGTGTAACAATGTAAATGT--GGAT----GGGCTTTTTA--CC----A---AT--ACCT-------AGACGT--AAACGTAGTCATG----TCG-T-CGTACAAACA-AACCTA-T-AATACG--TGATGTTTCCTTTGATC-CTCTTT-TACCAT--CATCTGGAA------TAA-AC--CAT-G----GGT--CCCCA-T-GACATTTCGC-AC-CAAACTT-TACTC-TG-TACC------TTTG-ACAA---TTT-G--T-A-TGAATTAC-AAGAAAAAACTAAAGGTAAGGACT--AC-TTGGATTCTC--T-CAA-CACC-G----AA---T-A---C---A-G--ACTTG-AATTTATATAATTGGGGAT-TTGCT-CATCACAGAT-TCTT--TGTTCCACCTCGTATTAATGA-ATGAGTGTGAACTCCAGAAACCTCGCCGATTCCTACATCTCAAATTTG---AAAATAAA-GAATCGATGCT-GTCAACATTAACAACAT--CTCAA-C-ATAACAAAAGTAAT-GTCCTGTATTTCTCTTTACTTTAAGAT-AAAT-CACACCTTG--TTTTCA-TATAGATATAATTCCAC-TA-T-CGCATTCCAAGTTAT-TTAATTACAAA-CAG-ACGTTGC-AGTGCCTAGATATTTTAACAATTACAAC-GAA-TCCTCCAAAGTGTACATAT-TCCTCTTCCTCA-TTAATTAT-AGACCCGCTG--GT-CATTATTATTA-GGGGGGATATAAATT--TAGTCA-AAATGAGGATCTC-AGTCCCTTA--TTTGAAAAGGTCCTAATAT---CGAGAACCTCGCTCAT-TTAAATGG-CGAC-GTAAT-TTCA-TGACTA--TC-ATGAATTATGTGGAAGAATACGCCAGACGC-TG---GA----AAAATC-TGAGG-GAGAGGA-GCTGACACTTTGTCTGAATGGA-TAACAAGT-ATTCGGAAATTTATCAAAATCCC-ATA-TCA-CC--ATTGAACGGG-GAA--AATG-CG--TACTATTTA-TCCCTCTGTTTTTA--AGAAA----CCA---GAA--GTGGTAAATGAGTTACATAGACTT---ACA-TAAAAATTGTGTACTGGTTCCAGCTGATAT--AAGC-TAGT-AC--ACATTGTC--TTG-TTTATAAAAGTTACTAT-TAT-AATGGTCTTTTTAAAGTGAACT--AGGGTTTA-CTTCGACATTTGGGAATC-CTACTTACAC-TCCTAAAGCAATTTCACAAAAGATGAAATTCTATGCAAAAATCTCAAGCCTTTCTGTTTT-AAATACTTTCAATAT--CGAGAGAATCAGGATTCAA-TTGATGTA-CATAGCCTTTAAGGTTGGACTTCCGAAATGTGCATAAGAAGTAATCCCTTAA-AAACAAAGATACAATTGCTGGG-TCCA-GTCAAGTGCTCCTAGACAAGGCTCTTTCTTTACTTTTTGTCCGCTAAACTACTAACAGCT--GCACAAGAATGCTCTTCAGA
gi|10 : AAAAAACTAAAGCTTGCTGCC--AC-TTGGTTTC-C--T-CCA-CACCGG----AA---T-A---C---A-G--ACTTA-A--CTATATA
gi|11 : G----GA---T-A---C---A-G--GCCTG-AATTTATATGAT--GGGATGTTGCTATATCACAGACTTCTTCCTGTTCCA
gi|12 : ATAG-C-CAAAAGATT--GTACACCTTTCCGTAGGCAACGAGAAG
gi|13 : aggaatattCTT--AATAT------------A-GATTCAATTTGAATTACCATA-CCTTTA---TTG
gi|14 : attaactttttAACTAGAGATAGGACCT--AC-TTGGATTC-C--T-CAA-CACCAG----AA---T-A---C---A-G--
gi|15 : TGGGGATGTTGCT-CATCACAGAC-TATT--TGTT
gi|16 : aaTGTATTCCGCCTTACTTTAAGATGAAAT
gi|17 : GAATACGCCAGGCGT-TG---GA---CAAAATCT
gi|18 : GGG-GAA--AATG-CG--TACTATTTA-TCCCTCg
gi|2 : CTATGAAAGTGAA--ATATATAGAAAAA--TTA-TCATTCAAACCAATAGTC-CAACA--TTA-GTACACCTTTCCGTAGACAAAGAGAAGA-T-ACTTGGATTAGGAAACTACGGCACTGCC-TTC-ATATGGTTGCAATTCGACAGATTGGGAAGCATAGGAACAATATT-CTAGTCCAACAGCG-AACAATGTAAATGT--G-AT----GGACTTTTTTTACC----ACATAC--ACCT-------AGACGT--AA-CGTAGTCATGGACATCG-TTCGTAC-AACA-AACCTATT-AATACA--TAATGTCTTCTTTGACCTCTCTTT-TACCATTTCAT---GAA------TAA-ACACCAT-G----GGT--CCCCA-T-CACATT-CGC-AC-CAAA--T-TACTC-TGGTCCCCCCCCATTTG-AAAA---TTT-T--TGA-TGAATTAC-AAGAAAAAATTAAAG-TAAGTCTT--AC-TTGGATCC-C-----AA-CACCGA----CA---T-A---C---A-GGGACTT--A--TTATATAAT-GGGGATGTTGCT-CATCACA-AC-TCTT--TGTTCCATCTTCTATTA-TGATACGAGTGTGAACTCCAGAAACCTCGCCGATCCTGAC----TAAGTTTGGGGAAAATTAAG--ATCGATGCTAGTCAACATTAACACAATTCCTCAA-CCATAACAAAAGT-AC-ATCCT-TATTC-GCCTTACTT--AGA-GAAATC-ACACCTTGTATTTTCAAGATAGATA-AATTC-ACTTATTACGCAATCCAAGTTATATTAATTACAAAACAGGAC-TTGCCAGTGCCTAGATA-TTGAACA--TACAAC-GAAATCCTC-AAAGTG-ACA-ATGTCCTCTCCTCCATTTCAATATTAGTCC-GCTGCTGTATATTA--ATTACGGGGG-ATATAAATCTATAGTCCTAAATGAGGATCTCAA-TCCCTTAATTTTGAAA-GGTCCTAA-ATTTCCGAGAACCTCGCTCATCTTAAATGGGCGACCATAAT-TTCAATGACTA--TC-ATGAATTCTGTGGAAGAATACGCCAGACGC-TG---GA---CAAAATCTTGAGG-GAGAGGAGATTG--ACTTTGTCTGAAT-GA-TAAAGAGTAATTCGGA---TTAATAAAATCCCGATATTCA---CGATTTAAGGGG-GAA--AATG-CG--TACTATTTA--CCCTC-G-TTT----AGAAA----CCAAA-GGA--G-G--AAATGTTTTACATAGA----CAACA-TGAAATTTTTGTACT-GTTCCAGCTGA-ATCAAAGCATAGTAACCAACATTGTCTTTTGTTTTGTAAAAGTTACTTTGTATCAATTGTCTTT---AAAT-AACTGGAGGGTTTACCTTCAACAATCTGGAATCACTACTTACACATC---AAGCAA--TCACAAAAGATTAAATTC---GTCAAAATC----ACCTTTCTGTTTTAAAACACTT--AATATTCC--AAGAATCA-GACTCAATTTG-ATTACCATA-CC-TTA---TTTGA--TCCGAAATGC-CATTAAA------CCCTT-ACAAAC-AAAATACAG-CGCTGAGCTCCACGT-AAGTGCT-CTA-CCAAGCCTCTTTCTCTAC--TTTG---ACTAAACGACTAACTGCTTATCAAAAGAAT--TCTTCAGA
gi|3 : AAGA--TTAAGTACATCTTTCCGTAGACAACGAGAAGAAT-ACT-GGATTAGGAAATTA-GGCACTGCCTTTCCATATGGGTGCAATGA-CAATGTT-AGAAGCATAGG-G-AATATTTCTAATCT-ACAGTGTAACAATGTAAATGT---GAT----GGGATTTTTT--CC----A---ATACACCT-------AGACAT--AAACGTAATCATGGACATCGTT-CGTAC-AACA-
gi|3 : aggtacattaagtacattaGAA------GAA-AT--CATTG----GGT--CCACA-T-CACATT-CGC-AC-CAAACTT-TGCTC-TG-TTCC------TTTG-AAAA---TTTTG--T-A-TGAA-------------ACTAAAGCTAGCTGCC--AC-CTGGATTC-C--T-CAA-CACCGG----AA---T-A---C---A-T--ACTTG-A--TTATATAATTGGGTATGTTGCC-TATCACACAC-TCTT--TGTTCCACCGCGTATTAATGAT--GAGAATGAAGTCCAGAAACATCGCCGTTTCCTACATCTCAAATTTG---ACAATAAAGGAATCGATGCT-GTTAACATTAACAGCAT-CCTCAATC-ATA--AAAAAT-ACAGTCATGTATTCCGCCTTACTTTAAGATGAAATCCACACCTTGTA-TTTCA-TGTAGATATAATTCCA-TTATT--GCA-TCCAAGTTTT-TTCATTACTAA-CAG-ACATTGC-AGTGCCTAGATA-TTGAACAATTACAATGGAA-TCCTCC--AGTGTACATGT-TCCTCTTCCTTGTTTGATTAT-AGTCTCGCTG--GT-CA-TATTATTACGGGGAGATATAA---TATAGT-CTAAATGAGGATCTTAAGTCCCTTA--TTTCAAAAGGTCCTAA-ATT-CTGAGAACCTTGCTCAT-TTAAATGG-CGAC-ATAAT-TTCA-T-ACTATTTC-ATGAATTCTGTGG-AGAATACGCCAGGCGT-TG---GA---CAAAATC-TAAGG---CAGGAGGTTGACACTTTGTCTGAATGAATTAACGAtgaagaaatcattgggtccacatcacattcgcaccaaactttgctctgttcctttgaaaattttgtatgaaactaaagctagctgccacctggattcctcaacaccggaatacatacttgattatataattgggtatgttgcctatcacacactctttgttccaccgcgtattaatgatgagaatgaagtccagaaacatcgccgtttcctacatctcaaatttgacaataaaggaatcgatgctgttaacattaacagcatcctcaatcataaaaaatacagtcatgtattccgccttactttaagatgaaatccacaccttgtatttcatgtagatataattccattattgcatccaagttttttcattactaacagacattgcagtgcctagatattgaacaattacaatggaatcctccagtgtacatgttcctcttccttgtttgattatagtctcgctggtcatattattacggggagatataatatagtctaaatgaggatcttaagtcccttatttcaaaaggtcctaaattctgagaaccttgctcatttaaatggcgacataatttcatactatttcatgaattctgtggagaatacgccaggcgttggacaaaatctaaggcaggaggttgacactttgtctgaatgaattaacgacgacggatataa
gi|4 : aggtacattaagtacattaaagattaagtacatctttccgtagacaacgagaagaatactggattaggaaattaggcactgcctttccatatgggtgcaatgacaatgttagaagcatagggaatatttctaatctacagtgtaacaatgtaaatgtgatgggattttttccaatacacctagacataaacgtaatcatggacatcgttcgtacaacatTAAATGTTGGGATTGGGGGACTTTTTT--CTTTATA---AT--CCCTTACACTCGTACGTTTAAACGTA-TCATGGA--TTA---CGTTC-AGCACAACCCATTCAATACAACTGATGTGTC-TACGATC-CTCTTTATAGC------TTTGGAAGTGAGATAATAC--TAT-GTGGAGGTTACACTACT-CACATCTCGC-ACTCAAACTTATACTCCTG-TTTT------TTTG-AAAC---TTT-GAGC-A-TTAAT----AACGAAAAACTAAAGATAAGGATCATAC-TCGG--TC-CG-TGCAA-AACTGGTGTCAAAGTC-AT--C---A-G--ACTTGAA--TTATATcgacggatataa
gi|5 : T-G----GGT--CAC-A-TGCACATTTCGCCAC-CAA-CTT-TACTC-TG---CC------TTTG-AAAATTCTTT-G--T-ATTGAATTGCGAAGAAAAACTTAAAGATAAG-GCC--ACTTTGGATTT-CCGT-CTA-CACCGG----AA---TGA---CTCAA-G--AC-TG-A--TTATATGATTAGtttctttggga
gi|6 : TCAAAATC----ACCTTTTTGTTTTAAA-----T--AGT------------------TTCAATTTGAATTACCACA-CCTTTA---TTGGA-TTAGGAAGT-TGCATAA----------------AAACAAAAATAC-TTTGCTGAT-TCCA-GT-AAGTGCT-CTA-CTAAGCCTATTTCTTTACTTT
gi|7 : tTCAGCCCAATTGACTGGGCGAACTAATGACGAACACCATTTACTCCTTCTG-TTTTGGAAGAAAGACACCAAGCAGATCG-GATAAATGAGTTACATAGATTTCCAATATTAAAA
gi|8 : aAACGT-T--TC-TG-TCCC------TTTGAAAAA---TTT-G----A-TGAATT-C-AAGAAAGACTTAAAGCTAGCTCCC--A--TTAGTTTC-C--T-CAATCACCGG----GA---T-AGTGC---AGG--ACTTG----TTTTATA
gi|9 : cattggatccC-ATAATATTCC-TGA--A--TCTATGAATTCTGTGGAAGAATAAGCT-GATGCTTGTGTGATTTC-AAATCTTGAGGTGAGAGAAg