lowQualScore : 11111111111 222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 1 222 2 77777777777 1 33 1 333333333333333333333 33 111111 1 222 1 11 1111 11 3333 1 222 11 22 1 11 2222 1 1 1 1111 11 1111 3333333333333333333333333333333333333333333333333333333333333333333333333333333 11 2222 111111 1 222 3333 11 11 111111111 44444 1 1111111 1 11 22 77777777777777777 11 222222 11 11111 1 22222222222222222222222 55555555 111 1111 1 111 11111 555555555555555555 111 11 1 3 1 111111 1 1 11111111 1 1111
lowQualScore : 4 5 1 000 6 6 0 55555555555 4 6 5 6 2 2 11 0 333333333333333333333 00 777777 3 666 7 7 99 44 6 6666 0 7 6 6 7 1 7 66 8 77 0000 6 1 3 888 33 4 3 9 11 4 11 9999 8 1 6 6 6 3 8 2 0 99 8 9999 8 66 6 1111 3 3 9 8888888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 88 8 3 66 6 4444 999999 5 8 8 6 000 9 3 3 4 4 6 6 8 8 6 88 33 88 3333 55 6 1 55 999 1 666666666 7 77 99 6 6 3 44444 5 3 9999999 6 6 6 6 5 5 3 44 6 3 11 8 11111111111111111 11 555555 22 44444 5 5 6 5 8 3 0 88888888888888888888888 5 5 5 5 66 5 33333333 3 5 555 5 2 5 99 888 88 5555 0 9 333 1 33333 555555555555555555 5 77 000 33 1 3 7 0 6 7 2 4 6 4 7 8 1 1 999999 3 6 4 88888888 5 2 9999 0
lowQualScore : . . . ... . . . ........... . . . . . . .. . ..................... .. ...... . ... . . .. .. . .... . . . . . . . .. . .. .... . . . ... .. . . . .. . .. .... . . . . . . . . . .. . .... . .. . .... . . . ............................................................................... . . .. . . .. . .... ...... . . . . ... . . . . . . . . . . .. .. .. .... .. . . .. ... . ......... . .. .. . . . ..... . . ....... . . . . . . . .. . . .. . ................. .. ...... .. ..... . . . . . . . ....................... . . . . .. . ........ . . ... . . . .. ... .. .... . . ... . ..... .................. . .. ... .. . . . . . . . . . . . . . . ...... . . . ........ . . .... .
lowQualScore : 0 0 5 555 0 0 0 00000000000 0 0 0 0 5 5 00 8 777777777777777777777 77 777777 3 000 0 3 00 33 0 3333 7 3 0 7 3 0 3 33 3 33 3333 0 0 3 000 88 2 2 8 55 5 00 4444 0 4 4 0 0 8 0 8 2 22 0 0000 0 00 0 2222 5 5 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 66 0 0 00 0 2222 555555 0 0 0 0 666 6 0 0 0 0 0 0 0 0 0 22 66 66 2222 88 7 7 77 000 3 000000000 0 88 22 7 7 3 33333 0 7 3333333 7 7 0 7 1 0 9 22 0 2 00 0 22222222222222222 00 222222 77 44444 7 7 0 0 6 0 6 33333333333333333333333 0 0 0 0 44 0 99999999 2 0 666 0 0 0 11 888 88 9999 1 4 777 7 44444 444444444444444444 7 99 000 66 4 9 3 8 0 0 5 0 7 3 0 4 7 7 333333 9 6 1 11111111 0 2 9999 2
consensus : GTANACGAAAATCCTGGAAAACATTCGTNTCNAGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAATGNGTGGAAAACNAAAGGAAAAGGCTCCGCGGGAAATGNCAACACCTGAAAGTAGGGAATCAAATAATCACAGA------------------G-ATCTAACAAAATAGCTAATACA-TTT-CTAAAAACTTA-TCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTAC-TAAAATCTTTAGAGAA--GTTTCATGATACATCTGCAGGTC-GGACCAGA--TCCATT-ATCAAATT-ATAAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--C-TTTAAC-ATGATCTGGGAGAGTGGTAATTTTCC--ACCTTCCTGGTCGCAAGCTACAATCATTCCCATTCC-------GAA-----AAT--G--------ATCACTCAGATCAAAA--GG----CGCA-AAGATCGAC--------TA-CAATTATC-GA-CCGATA-G-CCTTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACT-AATAATGCTTTACCAGATATGCAANGTGGTNTCAGGANAAATCGANGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGC-CTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATC--TTTATAATATTGGCCTTAA-AGGACATCTNCCA--AACTT-CA-TNAAAANTTT-CTAAGTAANAGACA-----TTTCAAT-GTA-CGCTTAGGATC-AACACTTTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAA-TAAACA----GA---T--CTGGCT-GAAGTA--CT--AAAAAA-GACT---TCCATGGA-AGTCTAT-ATGCTGATGACTTTGTTCTNTGTTATAAATCCGAA-ANTA-----T---------GAATTCC-AT-TGAGC-GAA-AAC-TACAGCT-ATGTCT---TCTAAACAAAA-TCCAAAATTNG-GCTG-AT-GTA---AATGGN-TTT--AAATTTTCCAGAACT-A-AAACCG--CG-TGTG---TGCA-TTTCTGCTCTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCATTTTCG-----ATAATAAACTTTCGTTCAAACCTCATATAGCN-------ATGCTCAAAGAAGAAATGTNCAAAGGCTCTTGATATAATAA
Reference ( gi|1 ) : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA-----------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAAAAGACATGCATTGTATCTAACAGTATAGCTACTGCA-TTT-CTAAAAACTCC-TCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTAC-TAAAATCTTTACAGAA--GTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--T-TTTAAC-ATGATCTGGGATAGTGGTAGTTTTCC--AACTTCCTGGTCGCAAGCTACAATCATTTCCATTCC-------GGA-----AAT--G--------ATTACTCAGATCAAAATTGGTG-CCGTATAAGATTAAC----ATACTAACAATTATC-GA-CCGATA-G-CTTTAA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACT-ATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGC-CTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATT--TTTATAATATTGGCCTCAA-AGAAGATATATCA--AACTT-CA-TAAAAAAAT--CTACGTAATAGATA-----TTTCAAT-GTA-CGCTTAAGATC-AACACTTTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAA-T----A----G----T--CTGGCT-AAAGTA--C---AAAAAA-GACC---TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCCCAA-AATA-----T---------GAATTCC-AC-TGAGC-GAA-AAC-TACAGCT-ATGTCTAC-TCTAAACAAAA-TCCAAAATTTG-GCCG-AT-ATA---AATGGT-TTT--ACATTTTCAAGAACT-A-AAATCG--CG-TGTG---TTCA-TCTTTG-TCGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCATTTTTG-----ATAATAAACTTTCCTTCATACTTCATATAGCA-------ATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|6 : GTATACGAAAATCCTGGAAAACATTCGTATCG--TCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAATGTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAA--------CAATAAATCTAACAAAATATCTAATACA-ATTACTAAAAACGCA-TCAACAGACAATATGAGCACAAATTTTATCATGA-ACAAACA------AGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTAC-TAAAATCCTTTGAAAA--GTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--C-TTCAGC-ATGATATTGGAGAGTGGTAATTTTCC--ACCTTCCTGATCTCAAGCTACAATCA-TTCCATTCCAAAACATGGG-----AAG--G--------ATTACTAAGATC---------------------CTAAC------------AATTATC-GA-CCAATA-G-CCTTA
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAATAA-GGTTTGGAATGCAATAAG--GAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATC----AATTA
gi|2 : TGAAAGTAGGGAATCAAATAATCACAGA------------------G-ATCTAACAAAATAGCTAATACAATTT-CTAAAAACTTA-TCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTAC-TAAAATCTTTAGAAAA--GTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--C-TTTAAC-ATGATCTGGGAGAGTGGTAATTTTTC--ACCTTCCTTGTCGCAAGCTACAATTATTCCCATTCC-------AAA-----AAT--ATGGAAAGCATCACTCAGAT-------------CGTA-ACGAT-------------------TATC-GA-CCGATC-G-CCTTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACT-TATAATGCTTTAat
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAG-------------------GTATCTAACAA-ATAGCTAATCAA-TTT-CTAAAAACTTTATCAACAGACAATATGAGCCCAAA-TTTATTTTGGCACAAACGTACACAAGAATAG-AAACATTTGA-GTCACATC-GAAAACA--CAATGTTATATCGAAGCATTTACT-TTGATGAGCTACTTAAAATCTT---AGAA--AATTCATG-TAC--TTACAATT--AGAC--AA--TCCATT----AGATT-ATAAAACA-CTTCCTAA----CATCAAAGAATGTCTGCTGCATAAT--TCTTTAAC-AT-ATCTGAG---GTGGTAATTTTTC--AAC-CCCTTGTCGCAAGCTACTATTATTCCCATTCC--------AA-----AAT--------------------ATGAAAA--GGCATTCACTCAAGATCG----------TAACGATTATCGGA-CCGATC-GCCCTTAC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-A-TAATGCTTTAactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|12 : TCTTTA-AGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAAT-TTAAACAATGATCTGAGA-GGTGGTAAATTTCC--ACCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAAAGATGGA-----AAG--GAA------ATCACTCGGATCactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|14 : --TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--C-TTTAAC-ATGATCTGGGATAGTGGTAATTTTCC--ACCTTCCTGGTCGCAAGCTACAACCATTCCCATTCC-------AAACCATGGATTGG--------ATCACTCAGATCCAAATctgaattacagaaccgatacgctttaaacaagctggtatgtaaaacat
gi|8 : GTAATTTCCCCCACCATCCCGGATGCAAGCTAC---CATT---ATTCC-------AAA-----AA-------------------AAA--AAAAATGG-------AAAAGGACAACGCAAATCCTATCAATTATC-GA-CCAATA-G-CCTTAA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTA-CATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC---TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATCTTAT--AAGATTGGTTTAatatagtctgaacaagttgcgtgttcaaaacc
gi|12 : AATTACA-GAACCGATACG-CTTTAAACAAGCTG-GTATGTAAAA--Caagggcgtttgtctaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|21 : tctttaagaaacgtgtcatgatacatccgtaggtcggaccagaagtccattgatcaaattactaaacaccttccaaaatctcaccaagaatgtcttctcaaataatttaaacaatgatctgagaggtggtaaatttccaccttcttggtcgcagcctacaatcattcccattccaaaagatggaaaggaaatcactcggatcctgAGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGT-AATAGTGat
gi|4 : gGTTTAGTTATGG-TTTCTTGAAACG-AATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGC-CTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGG-AATACGGTATCTTAA--AAGA-T--TTCATAATATTGGCCTTAA-AGGACATCTGCCA--AACTT-CATTCAGAATTT--CTAAGTAATAGACA-----TTTCAAT-GTA-CGCTTAGGTTC-AACACTTTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAA-TAAACA----G----T--CTGGCT-GAAGTT--CT--AAAAAACGA-C---TCCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCCAAA-AATA-----T---------GAATTCC-AT-TGAGC-GAA-AAC-TACAGCT-ATG------TCTAAACAAAA-TCCAAAATTGG-GCTG-AT-GTA---AATGGT-TTT--AAATTTTCCAGAAAT-A-AAACCG--CG-TGTG---TGCA-TTTCTGCTCTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCATTTTCG-----ATAATAAACTTTCGTTCAAACCTCATATAGCC-------ATGCTCAAAG-AAAAATGTTCAAAGGCTCTTGATATAAT
gi|2 : GACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGC-CTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATC--TTTGTAACATGGGTCTTGA-AGGGCATCTACTG--AACTT-CA-TAAAAAATTTACTAAGTAATGGACA-----TTTCAAT-CTA-CGCTTAGGATC-AACACTTTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGT
gi|3 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttaactGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGC-CTTTTGTAACAATAAGCATGTCA-TTCTATATTTTTTGC-TTTGGAAAAAGCGTACA-TACCAACATTAAAAATACGGTATCTTCATTAAGATC--TTTGTAACATGGGTCTT------AGGCATCTTACTGACTTCCA-TAAAAAATTA-CTAAGTAAATGACA------TTCAAT-CTACCGCTTTGGATCAAACAC-TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGA
gi|2 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttaactTCGACA-TGCTCTTTGTTAACAAAG-GCAT
gi|7 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttaactgaccagttagtaagacttgaaacctatattcaagAGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATA--TGTATGGTATTAGTATCCATGGACAATATTCTA--TATTT-TG-TAAAAAGTT--CT---TAAAAGA-ACGAGGTTTTTATAGT--TGCATAGGATC-CATTCTCTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAATT----A----GATC-T--CTGGTT-AAAGTAATG---AAAAAC-AATA---TTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCTGAATACTA-----TGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA--ATGGCTTC-AANAAACAGAATTCCAACA--TGAGCTG-ATAATATATAATGGC-TTC--AAATTCTCTAAATTT-ATACATCA--TC-TGTG-----CATTCTATA-ACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCCGttctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATT--TGCATAATATTGACCTTAA-AGGACATCTACCA--AACTT-CA-TTAACATTTTTCTAAGTAATAGACA-----TTTTAAT-GTA-CGCGTAGGATC-AACACTTTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAA-T----A----AACAAT--CTGGCT-GAAGTA--CTAAAAAAAA-GACT---CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCCAAA-AACA-----T---------GAATGCC-AT-AGAGC-GAA-AAT-TACAGCT-ACATGTATGTCTAAAC-AAA-TCCAAAATTGG-GCTG-AT-GTA---AATGGG-TTT--AAATTTTCCAGAACT-A-AAACCG--TG-TGTG---TGCA-TTTCTGCTCTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTATTTTTG-----ATAATGAACTTTCGTTTAAACCTCATATAGCG-------ATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|13 : agcaacattaat--AAGATC--TGTATAATATTGGCGTTAA-AGTATATCTGCCA--AACTT-CA-TCCAAAATTTTCTAAGTAAGAGGCA-----TTTCAAT-GTA-CGCTTAGGACC-AACACTC--AGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAA-TAAACA----G----C--CTGGCC-GAAGTA--C---
gi|8 : atgTTTAGACAAGTTTGAACAAGAAATGGGCGt
gi|19 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtctaggatctacatgtacgtaATGGATTACATTATTTAATATAAAAA-T----AAACAG----TTCCTGGCTTGAAGTA--C---TAAAAA-AATCGACTCCATGGA-AGTCTAT-ATGTTGATGA-TTTGTC-TATGTTATA
gi|9 : gctttaaacaagctggtatgtaaaacAGTA--CT--AAAAAACGACT---TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCCAAT-AGTA-----T---------GAATTCC-AC-TGAGC-GAA-AAC-TACAGCT-ATG------TCTAAACAAAA-TCCAAAATAGG-GCTG-AG-GTA---AATGGG-TTT--AAATTTTCTAGAACT-G-AAACCG--CA-CATA---TGCA-TTTCAGTTTTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACT-CAATTTAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCATTTTCG-------------------TTCAAACCTCCTATAGCA-------ATGCTAAAAG-AGAAATGTACAAAGACATTTGATAta
gi|10 : AGTA--CT--AAAAAC-GACT---TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCC--A-GATAGTTATT---------GAATTCC-AC-TGAGC-GAA-AAC-TACAGCTAATG------TCTAAACAAAA-TCCAAA---TA-GCTG-AG-GTA---AATGGCGTTT--AAA-TTTCTAGAACT-G-AAACCGCACA-TATGCATTTCA-TTTT------AAACG-AAAATTCAT---CA---ATA--TCATAGTTGACATTAGATGG-ACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCATTTTCG-------------------TTCA-ACTACCTATAGCA-------ATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ---AAAAAC-GACT---TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC-AA-ATTA-----T---------GAATTT--AT-TGAAC-GTA-AAA-TACAGTT-ATGTCTA------AACAAAA-TCCCAAATTGG-GCTG-AT-GTA-------------------TTTCCAGAATT------T-------TCTG---TTC-----TT------AACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTATTCCTCATATAGCA-------ATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|16 : act-----T---------GAATTCC-AT-TGAGC-GAAGAACATACAGCT-ATGTCT-------AAC--AA-TCCAAAA-TTG-G-CG-AT-GTA---AATGGT-TTT--A-ATCTCC-AGAACTAA-AAACCG--CGTTGTG---TGCA-T-TTCGCTCTAAACG-GAAA--CAC---CACCGA-GATCCACAac
gi|20 : TTTC-AT-CGAGG-GAA-AAC-AACAGTT-A-----AG-TTTAAACAAAC-TCCTAAA-TTA-ATCGTGT-GTA---AATGAT-TCTTAACGTTTa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCATTTTCG-----ATAATAAACTTTCGTTCAAACCTCAATTAGCC-------ATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCATTTTCG-----ATAATAAACTTTCGTTCAAACCTCAATTAGCC-------ATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|22 : TAATAAACTTTCGTTCAAACCTCATATGGCAAATTTTGATGCTCAAAG-A-------------GCTCTTGATATAAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT
Alignments
lowQualScore : 11111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 3333333333 33333333333333333333 1 1 1 1 1 2 1111 11 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 11 1 1111111 222222 222 11 222222222 11 5555555 11 11111 11111111 1
lowQualScore : 1 1 4 7 7 7777777777 11 0 6 0 11 0 6 11111111111111111111 3 0 0 0 0 3 4 0 6 0 3 3 3 3 3 2 4 2 3 0 0 8 2 1 0 6 4 3 99 5555 6 2 1 6 1 1 6 55 6 55 77 5 1 8 4444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 5 5 5 5 2 66 1 3 6 6 3 0 0 1 1 1 1 8 7 6 0 1 6 5 0 1 1 33 6 2 5 1 5 66 1 1 1 77 5 5 5 4444444 1 3 666666 6 555 5 5 5 3 1 33 666 1 555555555 66 4 4 44 00 5555555 66 5 4 4 777 77 4 33 4 5 55 0 999 66 5 66 888 00 0 5 2 6 0 22222 3 2 66 55555555 2 1 2
lowQualScore : . . . . . .......... .. . . . .. . . .................... . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. .... . . . . . . . .. . .. .. . . . ............................................................................ . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . .. . . . . . .. . . . .. . . . ....... . . ...... . ... . . . . . .. ... . ......... .. . . .. .. ....... .. . . . ... .. . .. . . .. . ... .. . .. ... .. . . . . . ..... . . .. ........ . . .
lowQualScore : 0 0 0 3 3 7777777777 77 7 7 7 77 7 5 55555555555555555555 2 8 0 0 0 2 0 0 5 2 2 0 2 2 2 5 0 5 2 0 8 0 8 8 8 0 0 2 22 8888 7 2 7 7 7 0 7 88 7 77 99 7 7 6 3333333333333333333333333333333333333333333333333333333333333333333333333333 7 4 0 0 0 7 5 99 0 2 7 7 5 7 7 0 0 0 0 0 8 7 7 0 7 7 1 4 3 88 5 2 0 0 7 77 0 4 0 99 7 7 0 6666666 0 2 000000 7 666 0 0 0 2 0 33 111 0 000000000 11 4 4 66 66 1111111 22 3 4 4 888 00 4 22 1 0 22 1 000 99 0 99 888 66 1 0 5 2 2 55555 2 2 11 44444444 8 9 6
consensus : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAATG---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-AG---------G-ATCTAACAAAATAGCTAATACA-TTT-CTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGATC-AAAA--GG----CG--C---A---AAGATC---C----T-A-CGATTATCG-ACCGATA-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATA-AAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T-CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA--TGTCT-------AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
Reference ( family-1534 ) : GTANACGAAAATCCTGGAAAACATTCGTNTCNAGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAATGNGTGGAAAACNAAAGGAAAAGGCTCCGCGGGAAATGNCAACACCTGAAAGTAGGGAATCAAATAATCACAGA------------------G-ATCTAACAAAATAGCTAATACA-TTT-CTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAGAAGTTTCATGATACATCTGCAGGTC-GGACCAGA--TCCATT-ATCAAATT-ATAAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCGAA-----A-AT--G--------ATCACTCAGATC-AAAA--GG----CG--C---A---AAGATCG-AC----T-A-CAATTATCG-ACCGATA-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGCTTTACCAGATATGCAANGTGGTNTCAGGANAAATCGANGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTNCCAAACTT-CATN-AAAANTTT-CTAAGTAANA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAGA--T-CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGCTGATGACTTTGTTCTNTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA--TGTCT--TC--TAAACAAAA-TCCAAAATTNGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------NATGCTCAAAGAAGAAATGTNCAAAGGCTCTTGATATAATAA
gi|1 : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA-----------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAAAAGACATGCATTGTATCTAACAGTATAGCTACTGCA-TTT-CTAAAAACTC-CTCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTACT-AAAATCTTTA-CAGAAGTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--TTTTAACA-TGATCTGGGATAGTGGTAGTTTTCC--A-ACTTCCTGGTCGCAAGCTACAATCATTTCCATTCCGGA-----A-AT--G--------ATTACTCAGATC-AAAATTGG----TG--CCGTAT--AAGATTA-ACATACT-AACAATTATCG-ACCGATA-GCT-TT-AA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACTATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGCCTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATTTTTATAATATTGGCCTCAAAGAAGA-TATATCAAACTT-CATA-AAAAA-AT-CTACGTAATA--GATATTTCAAT-GTA-CGCTTAAGATC-AACAC-----T-TTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAATA-----G--T-CTGGC-TAAAGTAC-AAAAAA---GACC-TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCC-CA-A-AATAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA--TGTCTACTC--TAAACAAAA-TCCAAAATTTGGC-CGAT-ATA---AATGG-TT-TTACATTTTCAAGAACTAAAA-TCGCGT-GTGTTCATCTTTG-T--CGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCA-----TTTTTGATAATAAACTTTCCTTCAT--ACTTCATATAGC-------AATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|10 : AGTACTAAAAAC---GACT-TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCCAGATA-GTTATT--------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTAA-TGTCT-------AAACAAAA-TCCAAA---TAGC-TGAG-GTA---AATGGCGT-TTAAA-TTTCTAGAACTGAAA-CCGCAC-ATATGCATTTC-ATT--TTAAACG-AAAATTCAT---CA---AT-AT-CATAGTTGACATTAGAT-GGACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCA-----T--------------TTTCGTTCAACTACC---TATAGC-------AATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ACTAAAAAC---GACT-TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC--A-A-ATTAT---------GAATTT-A--TTGAAC-GTA-AAA-TACAGTTA--TGTCT-------AAACAAAA-TCCCAAATTGGGC-TGAT-GTA------------------TTTCCAGAATT--------------------TTCTGTT--CTTAACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTAT--TCCTCATATAGC-------AATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|12 : TCTTTAAGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAATTTAAACAATGATCTGAGAG-GTGGTAAATTTCC--A-CCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAA-----AGAT--GGAAAGGAAATCACTCGGATC----------------------------------C----T-G--AATTACAGAACCGATACGCT-TTAAA-CAAGCTG-GTATGTAAAA--Cac
gi|13 : --AAGATCTGTATAATATTGGCGTTAAAGTATA-TCTGCCAAACTT-CATCCAAAATTTT-CTAAGTAAGA--GGCATTTCAAT-GTA-CGCTTAGGACC-AACAC-----T---CAGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAATAAACAG---C-CTGGC-CGAAGTACTat
gi|14 : atg--TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--CTTTAACA-TGATCTGGGATAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAACCATTCCCATTCCAAACCATGG-ATTGG--------ATCACTCAGATC-----------------C---A---AA--------------------TAT-------ATA-GTC-TG-AA-CAAGTTGCGTGTTCAAAA--CC
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAAT-AAGGTTTGGAATGCAATAA--GGAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATCAATTAAT
gi|16 : T---------GAATTCCA--TTGAGC-GAAGAACATACAGCTA--TGTCT--------AACAA---TCCAAAATT-GGC--GAT-GTA---AATGG-TT-TTAA--TCTCCAGAACTAAAAACCGCGTTGTGTGCATTTC-GCT--CTAAACG-GAAA--CAC---CACCGA-GATCCACA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAAa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|19 : -GCT-TT-AAACAAGCTG-GTATGTAAAA---CATGGA
gi|19 : ATGGATTACATTATTTAATATAAAAATAAACAGT--TCCTGGCTTGAAGTACTAAAAAAATCGAC--TCCATGGA-AGTCTAT-ATGTTGATGA-TTTG-TCTATGTTATAttacattatttaatataaaaataaacagttcctggcttgaagtactaaaaaaatcgactccatggaagtctatatgttgatgatttgtctatgttatata
gi|2 : gctttaaacaagctggtatgtaaaacTGAAAGTAGGGAATCAAATAATCACAGA------------------G-ATCTAACAAAATAGCTAATACAATTT-CTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTTC--A-CCTTCCTTGTCGCAAGCTACAATTATTCCCATTCCAAA-----A-AT--ATGGAAAGCATCACTCAGAT--------------CG--T---A-------------------A-CGATTATCG-ACCGATC-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACTTATAATGCTTTAta
gi|2 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGCCTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATCTTTGTAACATGGGTCTTGAAGGGCA-TCTACTGAACTT-CATA-AAAAATTTACTAAGTAATG--GACATTTCAAT-CTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|20 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttTTTCA--TCGAGG-GAA-AAC-AACAGTTA--AGTTT-------AAACAAAC-TCCTAAATTAATCGTG-T-GTA---AATGA-TTCTTAA
gi|21 : AGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGTAATAGTGcgttt
gi|22 : gTAATAAACTTTCGTTCAA--ACCTCATATGGCAAATTTTGATGCTCAAAGA--------------GCTCTTGATATAAT
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAGG------------------T-ATCTAACAAA-TAGCTAATCAA-TTT-CTAAAAACTTTATCAACAGACAATATGAGCCCAAATTT-ATTTTGGCACAAACGTACACAAGAATAGAAA-CATTTGAGT-CACATC-GAAAACA-C-AATGTTATATCGAAGCATTTACTT-TGATGAGCTACTTAAAATCTT-A-GAAAA--TTCATG-TAC--TTACAA-TT-AGAC--AA--TCCATT-A---GATT-ATAAAACAC-TTCCTAA----CATCAAAGAATGTCTGCTGCATAATT-CTTTAACA-T-ATCTGAG---GTGGTAATTTTTC--AACC--CCTTGTCGCAAGCTACTATTATTCCCATTCC-AA-----A-AT--------------------ATG-AAAA--GG----CATTC---ACTCAAGATCGTA-------A-CGATTATCGGACCGATC-GCCCTT-AC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-ATAATGCTTTAcaaa
gi|3 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGCCTTTTGTAACAATAAGCATGTCAT-TCTATATTTTTTGC-TTTGGAAAAAGCGTAC-ATACCAACATTAAAAATACGGTATCTTCATTAAGATCTTTGTAACATGGGTCTTA---GGCA-TCTTACTGACTTCCATA-AAAAATTA-CTAAGTAAAT--GACA-TTCAAT-CTACCGCTTTGGATCAAACAC-------TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGAactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|4 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttGTTTAGTTATGG-TTTCTTGAAACGAATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGCCTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGGAA-TACGGTATCTTAA--AAGAT-TTCATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATT-CAGAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGTTC-AACAC-----T-TTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAATAAACAG---T-CTGGC-TGAAGTTCTAAAAAAC--GACT--CCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCC-AA-A-AATAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA--TGTCT-------AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-TT-TTAAATTTTCCAGAAATAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------CATGCTCAAAGAA-AAATGTTCAAAGGCTCTTGATATAAT
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATTTGCATAATATTGACCTTAAAGGACA-TCTACCAAACTT-CATT-AACATTTTTCTAAGTAATA--GACATTTTAAT-GTA-CGCGTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACA-A--T-CTGGC-TGAAGTACTAAAAAAAA-GACT-CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-AA-A-AACAT---------GAATGCCA--TAGAGC-GAA-AAT-TACAGCTACATGTATG-TC--TAAACAAA--TCCAAAATTGGGC-TGAT-GTA---AATGG-GT-TTAAATTTTCCAGAACTAAAA-CCGTGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTA-----TTTTTGATAATGAACTTTCGTTTAA--ACCTCATATAGC-------GATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|6 : agcaacattaatGTATACGAAAATCCTGGAAAACATTCGTATC--GTCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAATGTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAACAATA-------A-ATCTAACAAAATATCTAATACA-ATTACTAAAAACGC-ATCAACAGACAATATGAGCACAAATTTTATCATGA-ACAAAC------AAGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTACT-AAAATCCTTT-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--CTTCAGCA-TGATATTGGAGAGTGGTAATTTTCC--A-CCTTCCTGATCTCAAGCTACAATCATT-CCATTCCAAA-----ACAT--G--------GGAA---GGATT-A---------------C---T---AAGATC---C----TAA-CAATTATCG-ACCAATA-GCC-TT-A
gi|7 : AGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATATGTATGGTATTAGTATCCATGGACAATATTCTATATTT-TGTA-AAAAGTTC-TTAA--AAGAACGAGGTTTTTATAGT--TGCATAGGATC-CATTC-----T-CTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAAT---TAGATCT-CTGGT-TAAAGTAATGAAAAA---CAATATTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCT-GA-ATACTATGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA-A--TGGCT--TCAANAAACAGAATTCCAACA-TGAGC-TGATAATATATAATGG-CT-TCAAATTCTCTA-AATTTATA-CATCAT-CTGTGCA-TTCTA-TAACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCC
gi|8 : GTAATTTCCCCCA-CCATCCCGGATGCAAGCTACCATTATTCCAA----AAA-----A-AA--A--------A------AAATGGAAAA--GGACAACG--C---A---AA--TC---C----T-ATCAATTATCG-ACCAATA-GCC-TT-AA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTACATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC--TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATC-------------TTATAAGATTGG-TTTAAAGGGCG-TTTGTCg
gi|8 : TAGGATC-TACATGTACGTATTTAGACAAGTTTGAACAAGAAATGGGCGtaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|9 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtcAGTACTAAAAAAC--GACT-TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCC-AA-T-AGTAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA--TGTCT-------AAACAAAA-TCCAAAATAGGGC-TGAG-GTA---AATGG-GT-TTAAATTTTCTAGAACTGAAA-CCGCAC-ATATGCATTTCAGTT--TTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACTCAATT-TAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCA-----T--------------TTTCGTTCAA--ACCTCCTATAGC-------AATGCTAAAAG-AGAAATGTACAAAGACATTTGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT
Alignments
lowQualScore : 111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33 44444444444 000000000000000000000000 111 1 1 1 11 1111 11 000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1111111 111111 222 11 11 222222222 111111 11111 11111 11 11111 11111111 1
lowQualScore : 1 44 7 7 11111111111 6 000000000000000000000000 3 0 111 0 3 1 0 3 0 0 3 1 3 3 3 2 1 1 3 0 0 8 1 0 6 33 3 99 5555 6 1 1 6 1 1 6 55 6 55 77 5 1 1 6 444444444444444444444444444444444444444444444444444444444444444444444444 0 1 5 5 5 5 2 66 1 3 6 6 3 8 7 6 0 1 6 5 0 1 1 33 6 2 5 2 5 1 7 1 77 5 5 5 4444444 1 7 444444 6 555 00 5 5 3 1 33 666 1 555555555 66 4 4 44 777777 11111 11111 66 3 4 4 777 77 4 33 4 5 888 0 999 66 5 66 888 00 0 5 2 6 0 22222 3 2 66 99999999 2 1 2
lowQualScore : . .. . . ........... . ........................ . . ... . . . . . . . . . . . . . . . . . . . . . . .. . .. .... . . . . . . . .. . .. .. . . . . ........................................................................ . . . . . . . .. . . . . . . . . . . . . . . . .. . . . . . . . . .. . . . ....... . . ...... . ... .. . . . . .. ... . ......... .. . . .. ...... ..... ..... .. . . . ... .. . .. . . ... . ... .. . .. ... .. . . . . . ..... . . .. ........ . . .
lowQualScore : 0 00 3 3 33333333333 5 555555555555555555555555 2 8 000 0 2 0 0 2 2 2 2 0 2 2 2 5 0 0 2 0 8 0 4 8 0 22 2 22 8888 7 0 7 7 7 0 7 88 7 77 99 7 7 7 6 333333333333333333333333333333333333333333333333333333333333333333333333 7 4 0 0 0 7 5 99 0 2 7 7 5 0 8 7 7 0 7 7 1 4 3 88 5 2 0 2 7 9 1 6 99 7 7 0 6666666 0 3 333333 7 666 11 0 0 2 4 33 111 0 000000000 11 4 4 66 222222 11111 11111 22 9 4 4 888 00 4 22 1 0 444 1 000 99 0 99 888 66 1 0 5 2 2 55555 2 2 11 99999999 8 9 3
consensus : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT--AAA--GG----CG--CA---AAGATC------CT-A-CGATTATCG-ACCGATA-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
Reference ( family-1534 ) : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--GGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGATCAAAA--GG----CG--CA---AAGATC------CT-A-CGATTATCG-ACCGATA-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
gi|1 : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA------------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAA-A--AGACATGCATTGTATCTAACAGTATAGCTACTGC-A-TTTCTAAAAACTC-CTCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTACT-AAAATCTTTA-CAGAAGTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--TTTTAACA-TGATCTGGGATAGTGGTAGTTTTCC--A-ACTTCCTGGTCGCAAGCTACAATCATTTCCATTCCGGA-----A-AT--G--------ATTACTCAGATCAAAATTGGTGC-CG--TAT--AAGATTAACATACTAA-CAATTATCG-ACCGATA-GCT-TT-AA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACTATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGCCTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATTTTTATAATATTGGCCTCAAAGAAGA-TATATCAAACTT-CATAAAAAA-AT-CTACGTAATA--GATATTTCAAT-GTA-CGCTTAAGATC-AACAC-----T-TTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAAT----AG---T--CTGGC-TAAAGTAC-AAAAAA---GACC-TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCC-CA-A-AATAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TGTCTACTCT-----AAACAAAA-TCCAAAATTTGGC-CGAT-ATA---AATGG-TT-TTACATTTTCAAGAACTAAAA-TCGCGT-GTGTTCATCTTTG-T--CGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCA-----TTTTTGATAATAAACTTTCCTTCAT--ACTTCATATAGC-------AATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|10 : AGTACTAAAAAC---GACT-TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCCAGATA-GTTATT--------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTAA-----TG-----TCT-----AAACAAAA-TCCAAA--TAG-C-TGAG-GTA---AATGGCGT-TTAAA-TTTCTAGAACTGAAA-CCGCAC-ATATGCATTTC-ATT--TTAAACG-AAAATTCAT---CA---AT-AT-CATAGTTGACATTAGAT-GGACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCA-----T--------------TTTCGTTCAACTACC---TATAGC-------AATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ACTAAAAAC---GACT-TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC--A-A-ATTAT---------GAATTT-A--TTGAAC-GTA-AAA-TACAGTTA------TG-----TCT-----AAACAAAA-TCCCAAATTGGGC-TGAT-GTA------------------TTTCCAGAATT--------------------TTCTGTT--CTTAACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTAT--TCCTCATATAGC-------AATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|12 : TCTTTAAGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAATTTAAACAATGATCTGAGAG-GTGGTAAATTTCC--A-CCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAA-----AGAT--GGAAAGGAAATCACTCG---------------------------GATC------CT-G--AATTACAGAACCGATACGCT-TTAAA-CAAGCTG-GTATGTAAAA--Cac
gi|13 : --AAGATCTGTATAATATTGGCGTTAAAGTATA-TCTGCCAAACTT-CATCCAAAATTTTCTAAGTAAGA--GGCATTTCAAT-GTA-CGCTTAGGACC-AACAC-----T---CAGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAATAAACAG---C--CTGGC-CGAAGTACTat
gi|14 : atg--TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--CTTTAACA-TGATCTGGGATAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAACCATTCCCATTCCAAACCATGG-ATTGG--------ATCACTCAGATC----------------CA---AA-------------------TAT-------ATA-GTC-TG-AA-CAAGTTGCGTGTTCAAAA--CC
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAAT-AAGGTTTGGAATGCAATAA---GGAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATCAATTAAT
gi|16 : T---------GAATTCCA--TTGAGC-GAAGAACATACAGCTA------TG-----TCT-----AA-CAA---TCCAAAATTGG---CGAT-GTA---AATGG-TT-TTAA--TCTCCAGAACTAAAAACCGCGTTGTGTGCATTTC-GCT--CTAAACG-GAAA--CAC---CACCGA-GATCCACA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAAa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|19 : -GCT-TT-AAACAAGCTG-GTATGTAAAA---CATGGA
gi|19 : ATGGATTACATTATTTAATATAAAAATAAACAG---TTCCTGGCTTGAAGTACTAAAAAAATCGAC--TCCATGGA-AGTCTAT-ATGTTGATGA-TTTG-TCTATGTTATAttacattatttaatataaaaataaacagttcctggcttgaagtactaaaaaaatcgactccatggaagtctatatgttgatgatttgtctatgttatata
gi|2 : gctttaaacaagctggtatgtaaaacTGAAAGTAGGGAATCAAATAATCACAGA-----------GA-----------TCTAACAAAATAGCTAATAC-AATTTCTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTTC--A-CCTTCCTTGTCGCAAGCTACAATTATTCCCATTCCAAA-----A-AT--ATGGAAAGCATCACTCAGAT-------------CG--TA------------------A-CGATTATCG-ACCGATC-GCC-TT-AA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACTTATAATGCTTTAta
gi|2 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGCCTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATCTTTGTAACATGGGTCTTGAAGGGCA-TCTACTGAACTT-CATAAAAAATTTACTAAGTAATG--GACATTTCAAT-CTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|20 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttTTTCA--TCGAGG-GAA-AAC-AACAGTTA------AG-----TTT-----AAACAAAC-TCCTAAATTAATCGTG-T-GTA---AATGA-TTCTTAA
gi|21 : AGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGTAATAGTGcgttt
gi|22 : gTAATAAACTTTCGTTCAA--ACCTCATATGGCAAATTTTGATGCTCAAAGA--------------GCTCTTGATATAAT
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAGGTA----------------------TCTAACAAA-TAGCTAATCA-A-TTTCTAAAAACTTTATCAACAGACAATATGAGCCCAAATTT-ATTTTGGCACAAACGTACACAAGAATAGAAA-CATTTGAGT-CACATC-GAAAACA-C-AATGTTATATCGAAGCATTTACTT-TGATGAGCTACTTAAAATCTT-A-GAAAA--TTCATG-TAC--TTACAATT--AGAC--AA--TCCATT-A---GATT-ATAAAACAC-TTCCTAA----CATCAAAGAATGTCTGCTGCATAATT-CTTTAACA-T-ATCTGAG---GTGGTAATTTTTC--AACC--CCTTGTCGCAAGCTACTATTATTCCCATTCCAAA-----ATAT--G--------A------------AAA--GG----CATTCACTCAAGATC------GT-AACGATTATCGGACCGATC-GCCCTT-AC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-ATAATGCTTTAcaaa
gi|3 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGCCTTTTGTAACAATAAGCATGTCAT-TCTATATTTTTTGC-TTTGGAAAAAGCGTAC-ATACCAACATTAAAAATACGGTATCTTCATTAAGATCTTTGTAACATGGGTCTTA---GGCA-TCTTACTGACTTCCATAAAAAATTA-CTAAGTAAAT--GACA-TTCAAT-CTACCGCTTTGGATCAAACAC-------TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGAactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|4 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttGTTTAGTTATGG-TTTCTTGAAACGAATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGCCTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGGAA-TACGGTATCTTAA--AAGAT-TTCATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATTCAGAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGTTC-AACAC-----T-TTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTTCTAAAAAAC--GAC--TCCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCC-AA-A-AATAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-TT-TTAAATTTTCCAGAAATAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------CATGCTCAAAGAA-AAATGTTCAAAGGCTCTTGATATAAT
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATTTGCATAATATTGACCTTAAAGGACA-TCTACCAAACTT-CATTAACATTTTTCTAAGTAATA--GACATTTTAAT-GTA-CGCGTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAA---T--CTGGC-TGAAGTACTAAAAAAAA-GACT-CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-AA-A-AACAT---------GAATGCCA--TAGAGC-GAA-AAT-TACAGCTACATGTATG-----TCT-----AAACAAA--TCCAAAATTGGGC-TGAT-GTA---AATGG-GT-TTAAATTTTCCAGAACTAAAA-CCGTGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTA-----TTTTTGATAATGAACTTTCGTTTAA--ACCTCATATAGC-------GATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|6 : agcaacattaatGTATACGAAAATCCTGGAAAACATTCGTATC--GTCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAAT-GTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAACAATAAA-----------TCTAACAAAATATCTAATACAA-TTACTAAAAACGC-ATCAACAGACAATATGAGCACAAATTTTATCATGA-ACAA------ACAAGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTACT-AAAATCCTTT-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--CTTCAGCA-TGATATTGGAGAGTGGTAATTTTCC--A-CCTTCCTGATCTCAAGCTACAATCATT-CCATTCCAAA-----ACAT--G--------GGAA---GGATTA---------------CT---AAGATC------CTAA-CAATTATCG-ACCAATA-GCC-TT-A
gi|7 : AGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATATGTATGGTATTAGTATCCATGGACAATATTCTATATTT-TGTAAAAAGTTC-TTAA--AAGAACGAGGTTTTTATAGT--TGCATAGGATC-CATTC-----T-CTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAAT---TAGATCT--CTGGT-TAAAGTAATGAAAAA---CAATATTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCT-GA-ATACTATGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA-A------TG-----GCTTCAANAAACAGAATTCCAACA-TGAGC-TGATAATATATAATGG-CT-TCAAATTCTCTA-AATTTATA-CATCAT-CTGTGCA-TTCTA-TAACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCC
gi|8 : GTAATTTCCCCCA-CCATCCCGGATGCAAGCTAC---CATT---ATTCCAAA-----A-AA--A--------AAAAAATGGA---AAA--GGACAACG--CA---AA--TC------CT-ATCAATTATCG-ACCAATA-GCC-TT-AA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTACATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC--TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATC-------------TTATAAGATTGG-TTTAAAGGGCG-TTTGTCg
gi|8 : TAGGATC-TACATGTACGTATTTAGACAAGTTTGAACAAGAAATGGGCGtaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|9 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtcAGTACTAAAAAAC--GACT-TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCC-AA-T-AGTAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATAGGGC-TGAG-GTA---AATGG-GT-TTAAATTTTCTAGAACTGAAA-CCGCAC-ATATGCATTTCAGTT--TTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACTCAATT-TAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCA-----T--------------TTTCGTTCAA--ACCTCCTATAGC-------AATGCTAAAAG-AGAAATGTACAAAGACATTTGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33 44444444444 999999999999999999999999 111 1 1 1 11 1111 11 000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1111111 111111 222 11 11 222222222 111111 11111 11111 11 11111 11111111 1
lowQualScore : 1 44 7 7 11111111111 6 333333333333333333333333 3 0 111 0 3 1 0 3 0 0 3 1 3 3 3 2 1 1 3 0 0 8 1 0 6 33 3 99 5555 6 1 1 6 1 1 6 55 6 55 77 5 1 1 6 000000000000000000000000000000000000000000000000000000000000000000000000 0 555 5 5 1 2 66 1 3 6 6 3 8 7 6 0 1 6 5 0 1 1 33 6 2 5 2 5 1 7 1 77 5 5 5 4444444 1 7 444444 6 555 00 5 5 3 1 33 666 1 555555555 66 4 4 44 777777 11111 11111 66 3 4 4 777 77 4 33 4 5 888 0 999 66 5 66 888 00 0 5 2 6 0 22222 3 2 66 99999999 2 1 2
lowQualScore : . .. . . ........... . ........................ . . ... . . . . . . . . . . . . . . . . . . . . . . .. . .. .... . . . . . . . .. . .. .. . . . . ........................................................................ . ... . . . . .. . . . . . . . . . . . . . . . .. . . . . . . . . .. . . . ....... . . ...... . ... .. . . . . .. ... . ......... .. . . .. ...... ..... ..... .. . . . ... .. . .. . . ... . ... .. . .. ... .. . . . . . ..... . . .. ........ . . .
lowQualScore : 0 00 3 3 33333333333 5 000000000000000000000000 2 8 000 0 2 0 0 2 2 2 2 0 2 2 2 5 0 0 2 0 8 0 4 8 0 22 2 22 8888 7 0 7 7 7 0 7 88 7 77 99 7 7 7 6 333333333333333333333333333333333333333333333333333333333333333333333333 7 999 0 0 4 5 99 0 2 7 7 5 0 8 7 7 0 7 7 1 4 3 88 5 2 0 2 7 9 1 6 99 7 7 0 6666666 0 3 333333 7 666 11 0 0 2 4 33 111 0 000000000 11 4 4 66 222222 11111 11111 22 9 4 4 888 00 4 22 1 0 444 1 000 99 0 99 888 66 1 0 5 2 2 55555 2 2 11 99999999 8 9 3
consensus : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
Reference ( family-1534 ) : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
gi|1 : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA------------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAA-A--AGACATGCATTGTATCTAACAGTATAGCTACTGC-A-TTTCTAAAAACTC-CTCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTACT-AAAATCTTTA-CAGAAGTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--TTTTAACA-TGATCTGGGATAGTGGTAGTTTTCC--A-ACTTCCTGGTCGCAAGCTACAATCATTTCCATTCCGGA-----A-AT--G--------ATTACTCAGATCAAAATTGGTGC-CG--TAT--AAGATTAACATACTAA-CAATTATCG-A-CCGATA-GCT-TTAA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACTATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGCCTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATTTTTATAATATTGGCCTCAAAGAAGA-TATATCAAACTT-CATAAAAAA-AT-CTACGTAATA--GATATTTCAAT-GTA-CGCTTAAGATC-AACAC-----T-TTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAAT----AG---T--CTGGC-TAAAGTAC-AAAAAA---GACC-TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCC-CA-A-AATAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TGTCTACTCT-----AAACAAAA-TCCAAAATTTGGC-CGAT-ATA---AATGG-TT-TTACATTTTCAAGAACTAAAA-TCGCGT-GTGTTCATCTTTG-T--CGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCA-----TTTTTGATAATAAACTTTCCTTCAT--ACTTCATATAGC-------AATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|10 : AGTACTAAAAAC---GACT-TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCCAGATA-GTTATT--------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTAA-----TG-----TCT-----AAACAAAA-TCCAAA--TAG-C-TGAG-GTA---AATGGCGT-TTAAA-TTTCTAGAACTGAAA-CCGCAC-ATATGCATTTC-ATT--TTAAACG-AAAATTCAT---CA---AT-AT-CATAGTTGACATTAGAT-GGACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCA-----T--------------TTTCGTTCAACTACC---TATAGC-------AATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ACTAAAAAC---GACT-TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC--A-A-ATTAT---------GAATTT-A--TTGAAC-GTA-AAA-TACAGTTA------TG-----TCT-----AAACAAAA-TCCCAAATTGGGC-TGAT-GTA------------------TTTCCAGAATT--------------------TTCTGTT--CTTAACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTAT--TCCTCATATAGC-------AATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|12 : TCTTTAAGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAATTTAAACAATGATCTGAGAG-GTGGTAAATTTCC--A-CCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAA-----AGAT--GGAAAGGAAATCACTCGGAT---------------------------C------CT-G--AATTACAG-AACCGATACGCT-TTAAACAAGCTG-GTATGTAAAA--Cac
gi|13 : --AAGATCTGTATAATATTGGCGTTAAAGTATA-TCTGCCAAACTT-CATCCAAAATTTTCTAAGTAAGA--GGCATTTCAAT-GTA-CGCTTAGGACC-AACAC-----T---CAGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAATAAACAG---C--CTGGC-CGAAGTACTat
gi|14 : atg--TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--CTTTAACA-TGATCTGGGATAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAACCATTCCCATTCCAAACCATGG-ATTGG--------ATCACTCAGAT-------------C---CA---AA-------------------TAT--------ATA-GTC-TGAA-CAAGTTGCGTGTTCAAAA--CC
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAAT-AAGGTTTGGAATGCAATAA---GGAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATCAATTAAT
gi|16 : T---------GAATTCCA--TTGAGC-GAAGAACATACAGCTA------TG-----TCT-----AA-CAA---TCCAAAATTGG---CGAT-GTA---AATGG-TT-TTAA--TCTCCAGAACTAAAAACCGCGTTGTGTGCATTTC-GCT--CTAAACG-GAAA--CAC---CACCGA-GATCCACA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAAa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|19 : -GCT-TTAAACAAGCTG-GTATGTAAAA---CATGGA
gi|19 : ATGGATTACATTATTTAATATAAAAATAAACAG---TTCCTGGCTTGAAGTACTAAAAAAATCGAC--TCCATGGA-AGTCTAT-ATGTTGATGA-TTTG-TCTATGTTATAttacattatttaatataaaaataaacagttcctggcttgaagtactaaaaaaatcgactccatggaagtctatatgttgatgatttgtctatgttatata
gi|2 : gctttaaacaagctggtatgtaaaacTGAAAGTAGGGAATCAAATAATCACAGA-----------GA-----------TCTAACAAAATAGCTAATAC-AATTTCTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTTC--A-CCTTCCTTGTCGCAAGCTACAATTATTCCCATTCCAAA-----A-AT--ATGGAAAGCATCACTCAGAT-------------CG--TA------------------A-CGATTATCG-A-CCGATC-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACTTATAATGCTTTAta
gi|2 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGCCTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATCTTTGTAACATGGGTCTTGAAGGGCA-TCTACTGAACTT-CATAAAAAATTTACTAAGTAATG--GACATTTCAAT-CTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|20 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttTTTCA--TCGAGG-GAA-AAC-AACAGTTA------AG-----TTT-----AAACAAAC-TCCTAAATTAATCGTG-T-GTA---AATGA-TTCTTAA
gi|21 : AGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGTAATAGTGcgttt
gi|22 : gTAATAAACTTTCGTTCAA--ACCTCATATGGCAAATTTTGATGCTCAAAGA--------------GCTCTTGATATAAT
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAGGTA----------------------TCTAACAAA-TAGCTAATCA-A-TTTCTAAAAACTTTATCAACAGACAATATGAGCCCAAATTT-ATTTTGGCACAAACGTACACAAGAATAGAAA-CATTTGAGT-CACATC-GAAAACA-C-AATGTTATATCGAAGCATTTACTT-TGATGAGCTACTTAAAATCTT-A-GAAAA--TTCATG-TAC--TTACAATT--AGAC--AA--TCCATT-A---GATT-ATAAAACAC-TTCCTAA----CATCAAAGAATGTCTGCTGCATAATT-CTTTAACA-T-ATCTGAG---GTGGTAATTTTTC--AACC--CCTTGTCGCAAGCTACTATTATTCCCATTCCAAA-----ATAT--G--------A-----------AAA---GG----CATTCACTCAAGATC------GT-AACGATTATCGGA-CCGATC-GCCCTTAC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-ATAATGCTTTAcaaa
gi|3 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGCCTTTTGTAACAATAAGCATGTCAT-TCTATATTTTTTGC-TTTGGAAAAAGCGTAC-ATACCAACATTAAAAATACGGTATCTTCATTAAGATCTTTGTAACATGGGTCTTA---GGCA-TCTTACTGACTTCCATAAAAAATTA-CTAAGTAAAT--GACA-TTCAAT-CTACCGCTTTGGATCAAACAC-------TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGAactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|4 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttGTTTAGTTATGG-TTTCTTGAAACGAATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGCCTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGGAA-TACGGTATCTTAA--AAGAT-TTCATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATTCAGAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGTTC-AACAC-----T-TTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTTCTAAAAAAC--GAC--TCCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCC-AA-A-AATAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-TT-TTAAATTTTCCAGAAATAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------CATGCTCAAAGAA-AAATGTTCAAAGGCTCTTGATATAAT
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATTTGCATAATATTGACCTTAAAGGACA-TCTACCAAACTT-CATTAACATTTTTCTAAGTAATA--GACATTTTAAT-GTA-CGCGTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAA---T--CTGGC-TGAAGTACTAAAAAAAA-GACT-CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-AA-A-AACAT---------GAATGCCA--TAGAGC-GAA-AAT-TACAGCTACATGTATG-----TCT-----AAACAAA--TCCAAAATTGGGC-TGAT-GTA---AATGG-GT-TTAAATTTTCCAGAACTAAAA-CCGTGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTA-----TTTTTGATAATGAACTTTCGTTTAA--ACCTCATATAGC-------GATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|6 : agcaacattaatGTATACGAAAATCCTGGAAAACATTCGTATC--GTCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAAT-GTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAACAATAAA-----------TCTAACAAAATATCTAATACAA-TTACTAAAAACGC-ATCAACAGACAATATGAGCACAAATTTTATCATGA-ACAA------ACAAGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTACT-AAAATCCTTT-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--CTTCAGCA-TGATATTGGAGAGTGGTAATTTTCC--A-CCTTCCTGATCTCAAGCTACAATCATT-CCATTCCAAA-----ACAT--G---------------GG----AA---GGAT--TA--CT---AAGATC------CTAA-CAATTATCG-A-CCAATA-GCC-TTA
gi|7 : AGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATATGTATGGTATTAGTATCCATGGACAATATTCTATATTT-TGTAAAAAGTTC-TTAA--AAGAACGAGGTTTTTATAGT--TGCATAGGATC-CATTC-----T-CTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAAT---TAGATCT--CTGGT-TAAAGTAATGAAAAA---CAATATTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCT-GA-ATACTATGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA-A------TG-----GCTTCAANAAACAGAATTCCAACA-TGAGC-TGATAATATATAATGG-CT-TCAAATTCTCTA-AATTTATA-CATCAT-CTGTGCA-TTCTA-TAACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCC
gi|8 : GTAATTTCCCCCA-CCATCCCGGATGCAAGCTAC---CATT---ATTCCAAA-----A-AA--A--------AAAAAATGGA--AAA---GGACAACG--CA---AA--TC------CT-ATCAATTATCG-A-CCAATA-GCC-TTAA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTACATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC--TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATC-------------TTATAAGATTGG-TTTAAAGGGCG-TTTGTCg
gi|8 : TAGGATC-TACATGTACGTATTTAGACAAGTTTGAACAAGAAATGGGCGtaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|9 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtcAGTACTAAAAAAC--GACT-TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCC-AA-T-AGTAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATAGGGC-TGAG-GTA---AATGG-GT-TTAAATTTTCTAGAACTGAAA-CCGCAC-ATATGCATTTCAGTT--TTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACTCAATT-TAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCA-----T--------------TTTCGTTCAA--ACCTCCTATAGC-------AATGCTAAAAG-AGAAATGTACAAAGACATTTGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33 44444444444 999999999999999999999999 111 1 1 1 11 1111 11 000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1111111 111111 222 11 11 222222222 111111 11111 11111 11 11111 11111111 1
lowQualScore : 1 44 7 7 11111111111 6 333333333333333333333333 3 0 111 0 3 1 0 3 0 0 3 1 3 3 3 2 1 1 3 0 0 8 1 0 6 33 3 99 5555 6 1 1 6 1 1 6 55 6 55 77 5 1 1 6 000000000000000000000000000000000000000000000000000000000000000000000000 0 555 5 5 1 2 66 1 3 6 6 3 8 7 6 0 1 6 5 0 1 1 33 6 2 5 2 5 1 7 1 77 5 5 5 4444444 1 7 444444 6 555 00 5 5 3 1 33 666 1 555555555 66 4 4 44 777777 11111 11111 66 3 4 4 777 77 4 33 4 5 888 0 999 66 5 66 888 00 0 5 2 6 0 22222 3 2 66 99999999 2 1 2
lowQualScore : . .. . . ........... . ........................ . . ... . . . . . . . . . . . . . . . . . . . . . . .. . .. .... . . . . . . . .. . .. .. . . . . ........................................................................ . ... . . . . .. . . . . . . . . . . . . . . . .. . . . . . . . . .. . . . ....... . . ...... . ... .. . . . . .. ... . ......... .. . . .. ...... ..... ..... .. . . . ... .. . .. . . ... . ... .. . .. ... .. . . . . . ..... . . .. ........ . . .
lowQualScore : 0 00 3 3 33333333333 5 000000000000000000000000 2 8 000 0 2 0 0 2 2 2 2 0 2 2 2 5 0 0 2 0 8 0 4 8 0 22 2 22 8888 7 0 7 7 7 0 7 88 7 77 99 7 7 7 6 333333333333333333333333333333333333333333333333333333333333333333333333 7 999 0 0 4 5 99 0 2 7 7 5 0 8 7 7 0 7 7 1 4 3 88 5 2 0 2 7 9 1 6 99 7 7 0 6666666 0 3 333333 7 666 11 0 0 2 4 33 111 0 000000000 11 4 4 66 222222 11111 11111 22 9 4 4 888 00 4 22 1 0 444 1 000 99 0 99 888 66 1 0 5 2 2 55555 2 2 11 99999999 8 9 3
consensus : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
Reference ( family-1534 ) : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
gi|1 : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA------------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAA-A--AGACATGCATTGTATCTAACAGTATAGCTACTGC-A-TTTCTAAAAACTC-CTCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTACT-AAAATCTTTA-CAGAAGTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--TTTTAACA-TGATCTGGGATAGTGGTAGTTTTCC--A-ACTTCCTGGTCGCAAGCTACAATCATTTCCATTCCGGA-----A-AT--G--------ATTACTCAGATCAAAATTGGTGC-CG--TAT--AAGATTAACATACTAA-CAATTATCG-A-CCGATA-GCT-TTAA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACTATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGCCTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATTTTTATAATATTGGCCTCAAAGAAGA-TATATCAAACTT-CATAAAAAA-AT-CTACGTAATA--GATATTTCAAT-GTA-CGCTTAAGATC-AACAC-----T-TTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAAT----AG---T--CTGGC-TAAAGTAC-AAAAAA---GACC-TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCC-CA-A-AATAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TGTCTACTCT-----AAACAAAA-TCCAAAATTTGGC-CGAT-ATA---AATGG-TT-TTACATTTTCAAGAACTAAAA-TCGCGT-GTGTTCATCTTTG-T--CGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCA-----TTTTTGATAATAAACTTTCCTTCAT--ACTTCATATAGC-------AATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|10 : AGTACTAAAAAC---GACT-TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCCAGATA-GTTATT--------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTAA-----TG-----TCT-----AAACAAAA-TCCAAA--TAG-C-TGAG-GTA---AATGGCGT-TTAAA-TTTCTAGAACTGAAA-CCGCAC-ATATGCATTTC-ATT--TTAAACG-AAAATTCAT---CA---AT-AT-CATAGTTGACATTAGAT-GGACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCA-----T--------------TTTCGTTCAACTACC---TATAGC-------AATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ACTAAAAAC---GACT-TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC--A-A-ATTAT---------GAATTT-A--TTGAAC-GTA-AAA-TACAGTTA------TG-----TCT-----AAACAAAA-TCCCAAATTGGGC-TGAT-GTA------------------TTTCCAGAATT--------------------TTCTGTT--CTTAACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTAT--TCCTCATATAGC-------AATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|12 : TCTTTAAGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAATTTAAACAATGATCTGAGAG-GTGGTAAATTTCC--A-CCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAA-----AGAT--GGAAAGGAAATCACTCGGAT---------------------------C------CT-G--AATTACAG-AACCGATACGCT-TTAAACAAGCTG-GTATGTAAAA--Cac
gi|13 : --AAGATCTGTATAATATTGGCGTTAAAGTATA-TCTGCCAAACTT-CATCCAAAATTTTCTAAGTAAGA--GGCATTTCAAT-GTA-CGCTTAGGACC-AACAC-----T---CAGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAATAAACAG---C--CTGGC-CGAAGTACTat
gi|14 : atg--TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--CTTTAACA-TGATCTGGGATAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAACCATTCCCATTCCAAACCATGG-ATTGG--------ATCACTCAGAT-------------C---CA---AA-------------------TAT--------ATA-GTC-TGAA-CAAGTTGCGTGTTCAAAA--CC
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAAT-AAGGTTTGGAATGCAATAA---GGAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATCAATTAAT
gi|16 : T---------GAATTCCA--TTGAGC-GAAGAACATACAGCTA------TG-----TCT-----AA-CAA---TCCAAAATTGG---CGAT-GTA---AATGG-TT-TTAA--TCTCCAGAACTAAAAACCGCGTTGTGTGCATTTC-GCT--CTAAACG-GAAA--CAC---CACCGA-GATCCACA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAAa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|19 : -GCT-TTAAACAAGCTG-GTATGTAAAA---CATGGA
gi|19 : ATGGATTACATTATTTAATATAAAAATAAACAG---TTCCTGGCTTGAAGTACTAAAAAAATCGAC--TCCATGGA-AGTCTAT-ATGTTGATGA-TTTG-TCTATGTTATAttacattatttaatataaaaataaacagttcctggcttgaagtactaaaaaaatcgactccatggaagtctatatgttgatgatttgtctatgttatata
gi|2 : gctttaaacaagctggtatgtaaaacTGAAAGTAGGGAATCAAATAATCACAGA-----------GA-----------TCTAACAAAATAGCTAATAC-AATTTCTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTTC--A-CCTTCCTTGTCGCAAGCTACAATTATTCCCATTCCAAA-----A-AT--ATGGAAAGCATCACTCAGAT-------------CG--TA------------------A-CGATTATCG-A-CCGATC-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACTTATAATGCTTTAta
gi|2 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGCCTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATCTTTGTAACATGGGTCTTGAAGGGCA-TCTACTGAACTT-CATAAAAAATTTACTAAGTAATG--GACATTTCAAT-CTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|20 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttTTTCA--TCGAGG-GAA-AAC-AACAGTTA------AG-----TTT-----AAACAAAC-TCCTAAATTAATCGTG-T-GTA---AATGA-TTCTTAA
gi|21 : AGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGTAATAGTGcgttt
gi|22 : gTAATAAACTTTCGTTCAA--ACCTCATATGGCAAATTTTGATGCTCAAAGA--------------GCTCTTGATATAAT
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAGGTA----------------------TCTAACAAA-TAGCTAATCA-A-TTTCTAAAAACTTTATCAACAGACAATATGAGCCCAAATTT-ATTTTGGCACAAACGTACACAAGAATAGAAA-CATTTGAGT-CACATC-GAAAACA-C-AATGTTATATCGAAGCATTTACTT-TGATGAGCTACTTAAAATCTT-A-GAAAA--TTCATG-TAC--TTACAATT--AGAC--AA--TCCATT-A---GATT-ATAAAACAC-TTCCTAA----CATCAAAGAATGTCTGCTGCATAATT-CTTTAACA-T-ATCTGAG---GTGGTAATTTTTC--AACC--CCTTGTCGCAAGCTACTATTATTCCCATTCCAAA-----ATAT--G--------A-----------AAA---GG----CATTCACTCAAGATC------GT-AACGATTATCGGA-CCGATC-GCCCTTAC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-ATAATGCTTTAcaaa
gi|3 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGCCTTTTGTAACAATAAGCATGTCAT-TCTATATTTTTTGC-TTTGGAAAAAGCGTAC-ATACCAACATTAAAAATACGGTATCTTCATTAAGATCTTTGTAACATGGGTCTTA---GGCA-TCTTACTGACTTCCATAAAAAATTA-CTAAGTAAAT--GACA-TTCAAT-CTACCGCTTTGGATCAAACAC-------TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGAactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|4 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttGTTTAGTTATGG-TTTCTTGAAACGAATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGCCTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGGAA-TACGGTATCTTAA--AAGAT-TTCATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATTCAGAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGTTC-AACAC-----T-TTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTTCTAAAAAAC--GAC--TCCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCC-AA-A-AATAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-TT-TTAAATTTTCCAGAAATAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------CATGCTCAAAGAA-AAATGTTCAAAGGCTCTTGATATAAT
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATTTGCATAATATTGACCTTAAAGGACA-TCTACCAAACTT-CATTAACATTTTTCTAAGTAATA--GACATTTTAAT-GTA-CGCGTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAA---T--CTGGC-TGAAGTACTAAAAAAAA-GACT-CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-AA-A-AACAT---------GAATGCCA--TAGAGC-GAA-AAT-TACAGCTACATGTATG-----TCT-----AAACAAA--TCCAAAATTGGGC-TGAT-GTA---AATGG-GT-TTAAATTTTCCAGAACTAAAA-CCGTGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTA-----TTTTTGATAATGAACTTTCGTTTAA--ACCTCATATAGC-------GATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|6 : agcaacattaatGTATACGAAAATCCTGGAAAACATTCGTATC--GTCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAAT-GTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAACAATAAA-----------TCTAACAAAATATCTAATACAA-TTACTAAAAACGC-ATCAACAGACAATATGAGCACAAATTTTATCATGA-ACAA------ACAAGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTACT-AAAATCCTTT-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--CTTCAGCA-TGATATTGGAGAGTGGTAATTTTCC--A-CCTTCCTGATCTCAAGCTACAATCATT-CCATTCCAAA-----ACAT--G---------------GG----AA---GGAT--TA--CT---AAGATC------CTAA-CAATTATCG-A-CCAATA-GCC-TTA
gi|7 : AGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATATGTATGGTATTAGTATCCATGGACAATATTCTATATTT-TGTAAAAAGTTC-TTAA--AAGAACGAGGTTTTTATAGT--TGCATAGGATC-CATTC-----T-CTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAAT---TAGATCT--CTGGT-TAAAGTAATGAAAAA---CAATATTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCT-GA-ATACTATGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA-A------TG-----GCTTCAANAAACAGAATTCCAACA-TGAGC-TGATAATATATAATGG-CT-TCAAATTCTCTA-AATTTATA-CATCAT-CTGTGCA-TTCTA-TAACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCC
gi|8 : GTAATTTCCCCCA-CCATCCCGGATGCAAGCTAC---CATT---ATTCCAAA-----A-AA--A--------AAAAAATGGA--AAA---GGACAACG--CA---AA--TC------CT-ATCAATTATCG-A-CCAATA-GCC-TTAA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTACATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC--TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATC-------------TTATAAGATTGG-TTTAAAGGGCG-TTTGTCg
gi|8 : TAGGATC-TACATGTACGTATTTAGACAAGTTTGAACAAGAAATGGGCGtaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|9 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtcAGTACTAAAAAAC--GACT-TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCC-AA-T-AGTAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATAGGGC-TGAG-GTA---AATGG-GT-TTAAATTTTCTAGAACTGAAA-CCGCAC-ATATGCATTTCAGTT--TTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACTCAATT-TAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCA-----T--------------TTTCGTTCAA--ACCTCCTATAGC-------AATGCTAAAAG-AGAAATGTACAAAGACATTTGATA
blockSeqs : C CA A A TGCAATGTAT C TAAAAACAATAAA A AA T T T C A A T T T A G T G A T A G A TA C AG GATC T T A T A G T AA A TA CC A T A C AAAAAAAAAATGGAAAAGGACAACGCAAATCCTATCA AA C C A C AC G G T T T T T A G A T T C TT C C A G C C T G AC A C A GTACGTA G A ATCT T ATC TA G T T C AG TA T GCTTAAACA AC T G CA CATGTA . TCAAN AT G G A TAT CG C AT G A TTG TGT AA A TT ATT CC . G A TTTTT T T CT AAATTTTG A G A
blockSeqs : A . . A TGCAATAA C GA A AA . T T . A A T T T A G T G A . . T T CC C . TTC . A A . A G . T . GA . . T A C ATATGAAAAGGCATTCACTCAAGATCGTAACG GA . . A C . G G . . A . C . G . . T C TC C T . A . A A T . . . . T A A TTC . AA T . . T G A AT T T . . . C A . . A T . . . T . AT A . CA TGC . . . . G . G A . T C . A A G A
blockSeqs : . TA . A . . A . . . G . . . . A C . . . T A C C . ATG . A A . A G . . . GA . . T A C AATATGGAAAGCATCACTCAGATCGTAACG A . . . C . G G . . A . A . A . . T A . C T . T . A T A . . . . T G A C . C T . . T A A A A . . . . A . . . A G . . . T . AT A . TG TGC . . . . C . G A . T C . A A A T
blockSeqs : . C . . . . A . A G . A A . . . G . . T T C AGATGGAAAGGAAATCACTCGGATCCTGA A . . . C . G . . . A . C . G . . T A . T C . G . T . T . . . . T G A T . C T . . T A G A A . . . . C . . . C G . . . T . AT A . TG AGT . . . . C . G C . T C . C A A T
blockSeqs : . . . G . . . . . . . . . . A A . ACATGGGAAGGATTACTAAGATCCTAACA A . . . C . . . . . . . . . . . A . A C . A . T . T . . . . T . . T . . T . . T C A A C . . . . C . . . A G . . . G . A T . TC AT . . . . C . G A . T T . C A G T
blockSeqs : . . . . . CCATGGATTGGATCACTCAGATCCAAA . . . . . . . . . . . T . T . A . G . . . . T . . . . . T . T G . . . . T . . . A G . . . C . . G . CA GC . . . . . . . . . . . . C . G A
blockSeqs : . . . . . . . . G . . . . . . . C . . . . C . . . . . . . . G . . . . . TA . . . . . . . . . . . . G . . A
blockSeqs : . . . . . . . . . . . . . . . A . . .
blockSeqCons : ***** TGC
originalCons : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
finalCons : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33 44444444444 999999999999999999999999 111 1 1 1 11 1111 11 000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1111111 111111 222 11 11 222222222 111111 11111 11111 11 11111 11111111 1
lowQualScore : 1 44 7 7 11111111111 6 333333333333333333333333 3 0 111 0 3 1 0 3 0 0 3 1 3 3 3 2 1 1 3 0 0 8 1 0 6 33 3 99 5555 6 1 1 6 1 1 6 55 6 55 77 5 1 1 6 000000000000000000000000000000000000000000000000000000000000000000000000 0 555 5 5 1 2 66 1 3 6 6 3 8 7 6 0 1 6 5 0 1 1 33 6 2 5 2 5 1 7 1 77 5 5 5 4444444 1 7 444444 6 555 00 5 5 3 1 33 666 1 555555555 66 4 4 44 777777 11111 11111 66 3 4 4 777 77 4 33 4 5 888 0 999 66 5 66 888 00 0 5 2 6 0 22222 3 2 66 99999999 2 1 2
lowQualScore : . .. . . ........... . ........................ . . ... . . . . . . . . . . . . . . . . . . . . . . .. . .. .... . . . . . . . .. . .. .. . . . . ........................................................................ . ... . . . . .. . . . . . . . . . . . . . . . .. . . . . . . . . .. . . . ....... . . ...... . ... .. . . . . .. ... . ......... .. . . .. ...... ..... ..... .. . . . ... .. . .. . . ... . ... .. . .. ... .. . . . . . ..... . . .. ........ . . .
lowQualScore : 0 00 3 3 33333333333 5 000000000000000000000000 2 8 000 0 2 0 0 2 2 2 2 0 2 2 2 5 0 0 2 0 8 0 4 8 0 22 2 22 8888 7 0 7 7 7 0 7 88 7 77 99 7 7 7 6 333333333333333333333333333333333333333333333333333333333333333333333333 7 999 0 0 4 5 99 0 2 7 7 5 0 8 7 7 0 7 7 1 4 3 88 5 2 0 2 7 9 1 6 99 7 7 0 6666666 0 3 333333 7 666 11 0 0 2 4 33 111 0 000000000 11 4 4 66 222222 11111 11111 22 9 4 4 888 00 4 22 1 0 444 1 000 99 0 99 888 66 1 0 5 2 2 55555 2 2 11 99999999 8 9 3
consensus : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
Reference ( family-1534 ) : GTAAACGAAAATCCTGGAAAACATTCGTNTC-AGTCTAAATTCGCATACTCCTATCAATAAAGGTTTGGAATGCAAT-G---GGAAAATAAAAGGAAAAGGCTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCAAATAATCACAGATAAAAA-A--AGA-----------TCTAACAAAATAGCTAATAC-A-TTTCTAAAAACTC-ATCAACAGACAATATGAGCCCAAATTTTATCNTGG-ACAAACGTACACAAGAACAGAAAACATTNGATTTCACATCTGAAAACAACGAATGTTATANCGAGNCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATCAAATT-ATNAAACACCTTCCTAAATC-CACCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAATCATTCCCATTCCAAA-----A-AT--G--------ATCACTCGGAT-AAA---GG----CG--CA---AAGATC------CT-A-CGATTATCG-A-CCGATA-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGT-ATGG-TTTCTTGAAACTAATAATGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGTTAGTAAGACTTGAAACCTATATTCGAGA-TGCCTTTGTTAACAAAGAGCATGTCGTCTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TGGAAATACGGTATCTTAA--AAGATCTTTATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATAAAAAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTACTAAAAAA---GACT-TCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-GA-A-ANTAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-NT-TTAAATTTTCCAGAACTAAAA-CCGCGC-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAGTTGACATTAGATGGGACTCCAAT-TAAAGTTGTAAAAGAGGTTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------GATGCTCAAAGAAGAAATGTACAAAGGCTCTTGATATAATAA
gi|1 : GTAAACGAAAATCCTGTAAAACATTCGTTTCGAGTCTAAATTCGCATACTTCTACCAATAA-GGTTTGGAA------------GAAAATAAAAGGGAAATGTTTCGGGGAAAATACCAACATCTGAAAGTAGGGAATCTGATAATTACAGATAAAAA-A--AGACATGCATTGTATCTAACAGTATAGCTACTGC-A-TTTCTAAAAACTC-CTCAACAGACAAAATGAGCCCAAATTTTATCATGA-ATAAACATATACAAGAACAGAAAACACTGGATTTTACATCTGAAAACAATGAATGTTATAACGAGCCATTTACTAATCACGAGTTACT-AAAATCTTTA-CAGAAGTCTCATGATACATCTGTAGGTCCGGACTAGA--TCCATT-ATCAAATT-ATTAAACACCTTTCTGAATC-CACCAAGGAATGTATTCTGTA-AAT--TTTTAACA-TGATCTGGGATAGTGGTAGTTTTCC--A-ACTTCCTGGTCGCAAGCTACAATCATTTCCATTCCGGA-----A-AT--G--------ATTACTCAGATCAAAATTGGTGC-CG--TAT--AAGATTAACATACTAA-CAATTATCG-A-CCGATA-GCT-TTAA-TAAACTGCGTATGTAATA--CCATAAAACAGAGGATTAATGAACGCTTAGT-ATGG-TTTCTTAAAACTATTAGTGTTTTATCAGATATACAATGTGGTTTCAGGAAAAATCGAAGCACAGTCGACCAGTTAGTAAGACTTGAAACCTGTATTCGAGA-TGCCTTCGTTAACAAAGAGCATGTCGTTTCTATATCTTTTGA-CTTAGAAAAAGCATTCGTTACT-ACA-TGGAAATACGGTATCTTAA--AAGATTTTTATAATATTGGCCTCAAAGAAGA-TATATCAAACTT-CATAAAAAA-AT-CTACGTAATA--GATATTTCAAT-GTA-CGCTTAAGATC-AACAC-----T-TTTAGACAATTTCGAACAAGAAATTGGTGTCGCACAAGGAAGTGTTTTATCGGTTACCCTATTTAGTATAAAAAT----AG---T--CTGGC-TAAAGTAC-AAAAAA---GACC-TCCATGGA-AGTCTAT-ATGTTGATGGCTTTGTTGTCTGTTATAAATCC-CA-A-AATAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TGTCTACTCT-----AAACAAAA-TCCAAAATTTGGC-CGAT-ATA---AATGG-TT-TTACATTTTCAAGAACTAAAA-TCGCGT-GTGTTCATCTTTG-T--CGAAACG-GAAA--CAC---CA-CGATGATTCGCAGTTGACATTAGATAGCACTCCGATATAAAGTTGTAAAAGAGGTAAAGTTCTTAGGTGTCA-----TTTTTGATAATAAACTTTCCTTCAT--ACTTCATATAGC-------AATGCTCAAAG-AGAAATCTATAAAGGCTCTTGATATAATAA
gi|10 : AGTACTAAAAAC---GACT-TCCATGGAGAGTATATTATGCTGATGACT--GTTCTCTGTTATTAATCCAGATA-GTTATT--------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTAA-----TG-----TCT-----AAACAAAA-TCCAAA--TAG-C-TGAG-GTA---AATGGCGT-TTAAA-TTTCTAGAACTGAAA-CCGCAC-ATATGCATTTC-ATT--TTAAACG-AAAATTCAT---CA---AT-AT-CATAGTTGACATTAGAT-GGACT-CAAT-TTAAGTTGTAAAAGTGGTTAAGTTCATAGGT-CCA-----T--------------TTTCGTTCAACTACC---TATAGC-------AATGCTAAAAGAAGAAATGTACAAAGACATTTGATA
gi|11 : ACTAAAAAC---GACT-TCCATGGG-AGTCTTT-ATGTCGATGACTTTGTTCTGTGTTATGAATTC--A-A-ATTAT---------GAATTT-A--TTGAAC-GTA-AAA-TACAGTTA------TG-----TCT-----AAACAAAA-TCCCAAATTGGGC-TGAT-GTA------------------TTTCCAGAATT--------------------TTCTGTT--CTTAACG-GAAA--CAT---CA-GGCTGATCTATAGTCTAATTTAGATGGTACTCCAAT-TAAAGTTGTAAAAGAAGTTAAGTTCTTAGGTGTCATTTTTTTTTTTATAATAAACTCTTTTTTAT--TCCTCATATAGC-------AATGCTTAAAG-AGAAATGCATTAAGGCT-TTGATACAA
gi|12 : TCTTTAAGAAACGTGTCATGATACATCCGTAGGTC-GGACCAGAAGTCCATTGATCAAATT-ACTAAACACCTTCCAAAATCTCACCAA-GAATGTCTTCT-CA-AATAATTTAAACAATGATCTGAGAG-GTGGTAAATTTCC--A-CCTTCTTGGTCGCAGCCTACAATCATTCCCATTCCAAA-----AGAT--GGAAAGGAAATCACTCGGAT---------------------------C------CT-G--AATTACAG-AACCGATACGCT-TTAAACAAGCTG-GTATGTAAAA--Cac
gi|13 : --AAGATCTGTATAATATTGGCGTTAAAGTATA-TCTGCCAAACTT-CATCCAAAATTTTCTAAGTAAGA--GGCATTTCAAT-GTA-CGCTTAGGACC-AACAC-----T---CAGACAATTTCGAACAAGAAATGAACGTTCCACAAGGAAATATTTTATGGGTTACATTATTTAGTATAAAAATAAACAG---C--CTGGC-CGAAGTACTat
gi|14 : atg--TCCATT-TTCAAATTTATAGAACATCTTCCTAAATC-CACCAAAGAATGTATTCTGCA-AAT--CTTTAACA-TGATCTGGGATAGTGGTAATTTTCC--A-CCTTCCTGGTCGCAAGCTACAACCATTCCCATTCCAAACCATGG-ATTGG--------ATCACTCAGAT-------------C---CA---AA-------------------TAT--------ATA-GTC-TGAA-CAAGTTGCGTGTTCAAAA--CC
gi|15 : TAAACGAAAATCCTGGAAAACATTTATCTCCAGTCTAAATTCGCATACTCCTATTAAT-AAGGTTTGGAATGCAATAA---GGAAAATTAAAGGAAAAGGCTCCACAAAAAATGACAACATCTGAAAGTAGGGAATCAATTAAT
gi|16 : T---------GAATTCCA--TTGAGC-GAAGAACATACAGCTA------TG-----TCT-----AA-CAA---TCCAAAATTGG---CGAT-GTA---AATGG-TT-TTAA--TCTCCAGAACTAAAAACCGCGTTGTGTGCATTTC-GCT--CTAAACG-GAAA--CAC---CACCGA-GATCCACA
gi|17 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAAa
gi|18 : ACATTAGATGGGACTCCAAT-TAAG--TGTAAAAGAGGGTAAGTTCTT-GGTATCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCAATTAGC-------CATGCTCAATGAAAAAATGTTCAAAGGCTCTTGATATAATAA
gi|19 : -GCT-TTAAACAAGCTG-GTATGTAAAA---CATGGA
gi|19 : ATGGATTACATTATTTAATATAAAAATAAACAG---TTCCTGGCTTGAAGTACTAAAAAAATCGAC--TCCATGGA-AGTCTAT-ATGTTGATGA-TTTG-TCTATGTTATAttacattatttaatataaaaataaacagttcctggcttgaagtactaaaaaaatcgactccatggaagtctatatgttgatgatttgtctatgttatata
gi|2 : gctttaaacaagctggtatgtaaaacTGAAAGTAGGGAATCAAATAATCACAGA-----------GA-----------TCTAACAAAATAGCTAATAC-AATTTCTAAAAACTT-ATCAACAGACAATATGAGCCCAAATTTTATTTTGG-ACAAACGTACACAAGAATAGAAAACATTTGATTTCACATCTGAAAACAACGAATGTTATATCGAAGCATTTACTTATGATGAGCTACT-AAAATCTTTA-GAAAAGTTTCATGATACTTCTACAAGTTAGGACCAGA--TCCATT----AGATT-ATAAAACACCTTCCTAAATC-CATCAAAGAATGTCTTCTGCA-AAT--CTTTAACA-TGATCTGGGAGAGTGGTAATTTTTC--A-CCTTCCTTGTCGCAAGCTACAATTATTCCCATTCCAAA-----A-AT--ATGGAAAGCATCACTCAGAT-------------CG--TA------------------A-CGATTATCG-A-CCGATC-GCC-TTAA-CAAGCTGCGTATGTAAAA--CCATGGAACGGATGATTAATGAACGCTTAGC-ATGG-TTTCTTGAAACTTATAATGCTTTAta
gi|2 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGA-TGCCTTTGTTAACAAAGAGCATGTCGATTCTATATTTTTTGA-CTTGGAAAAAGCGTACGATACC-ACA-TAAAAATACGGTATCTTCA--AAGATCTTTGTAACATGGGTCTTGAAGGGCA-TCTACTGAACTT-CATAAAAAATTTACTAAGTAATG--GACATTTCAAT-CTA-CGCTTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTCCACAAGGAAGTactgaccagttagtaagacttgaaacctatattcaagatgcctttgttaacaaagagcatgtcgattctatattttttgacttggaaaaagcgtacgataccacataaaaatacggtatcttcaaagatctttgtaacatgggtcttgaagggcatctactgaacttcataaaaaatttactaagtaatggacatttcaatctacgcttaggatcaacactttcagacaatttcgaacaagaaatgggcgttccacaaggaagt
gi|20 : tgaaagtagggaatcaaataatcacagagatctaacaaaatagctaatacaatttctaaaaacttatcaacagacaatatgagcccaaattttattttggacaaacgtacacaagaatagaaaacatttgatttcacatctgaaaacaacgaatgttatatcgaagcatttacttatgatgagctactaaaatctttagaaaagtttcatgatacttctacaagttaggaccagatccattagattataaaacaccttcctaaatccatcaaagaatgtcttctgcaaatctttaacatgatctgggagagtggtaatttttcaccttccttgtcgcaagctacaattattcccattccaaaaatatggaaagcatcactcagatcgtaacgattatcgaccgatcgccttaacaagctgcgtatgtaaaaccatggaacggatgattaatgaacgcttagcatggtttcttgaaacttataatgctttTTTCA--TCGAGG-GAA-AAC-AACAGTTA------AG-----TTT-----AAACAAAC-TCCTAAATTAATCGTG-T-GTA---AATGA-TTCTTAA
gi|21 : AGCTGCGTGTTTAAAT--CCATGGCAAGGATGATTAATGAGCGCTTAGT-ATGG-TTTCTTGATAGTAATAGTGcgttt
gi|22 : gTAATAAACTTTCGTTCAA--ACCTCATATGGCAAATTTTGATGCTCAAAGA--------------GCTCTTGATATAAT
gi|3 : TGAAAGCTAGGAATCAAATAAT-ACAGGTA----------------------TCTAACAAA-TAGCTAATCA-A-TTTCTAAAAACTTTATCAACAGACAATATGAGCCCAAATTT-ATTTTGGCACAAACGTACACAAGAATAGAAA-CATTTGAGT-CACATC-GAAAACA-C-AATGTTATATCGAAGCATTTACTT-TGATGAGCTACTTAAAATCTT-A-GAAAA--TTCATG-TAC--TTACAATT--AGAC--AA--TCCATT-A---GATT-ATAAAACAC-TTCCTAA----CATCAAAGAATGTCTGCTGCATAATT-CTTTAACA-T-ATCTGAG---GTGGTAATTTTTC--AACC--CCTTGTCGCAAGCTACTATTATTCCCATTCCAAA-----ATAT--G--------A-----------AAA---GG----CATTCACTCAAGATC------GT-AACGATTATCGGA-CCGATC-GCCCTTAC-CAAGCTGCGTATGAAAAAACCCAT-GAAC-GATGATTAATAAACGCTTAGC-ATGGTTTTCTTGAAACT-ATAATGCTTTAcaaa
gi|3 : AACTGACCAGTTAGTAAGACTTGAAACCTATATTCAAGATTGCCTTTTGTAACAATAAGCATGTCAT-TCTATATTTTTTGC-TTTGGAAAAAGCGTAC-ATACCAACATTAAAAATACGGTATCTTCATTAAGATCTTTGTAACATGGGTCTTA---GGCA-TCTTACTGACTTCCATAAAAAATTA-CTAAGTAAAT--GACA-TTCAAT-CTACCGCTTTGGATCAAACAC-------TTCAG-CAATTTCGAACAAGAAAGGCGCGTTCCACAAGGAactgaccagttagtaagacttgaaacctatattcaagattgccttttgtaacaataagcatgtcattctatattttttgctttggaaaaagcgtacataccaacattaaaaatacggtatcttcattaagatctttgtaacatgggtcttaggcatcttactgacttccataaaaaattactaagtaaatgacattcaatctaccgctttggatcaaacacttcagcaatttcgaacaagaaaggcgcgttccacaagga
gi|4 : tgaaagctaggaatcaaataatacaggtatctaacaaatagctaatcaatttctaaaaactttatcaacagacaatatgagcccaaatttattttggcacaaacgtacacaagaatagaaacatttgagtcacatcgaaaacacaatgttatatcgaagcatttactttgatgagctacttaaaatcttagaaaattcatgtacttacaattagacaatccattagattataaaacacttcctaacatcaaagaatgtctgctgcataattctttaacatatctgaggtggtaatttttcaaccccttgtcgcaagctactattattcccattccaaaatatgaaaaggcattcactcaagatcgtaacgattatcggaccgatcgcccttaccaagctgcgtatgaaaaaacccatgaacgatgattaataaacgcttagcatggttttcttgaaactataatgctttGTTTAGTTATGG-TTTCTTGAAACGAATAATATTTTATCAGATATGCAATGTGGTTTCAGGAAAAATCGAAGCACAATCGACCAGCTAGTAAGACTTGAAACCTACATTCGAGA-TGCCTTTGTTAAAAAAGAGCATGTCGTCTCTATATTTTTTGA-TTTAGAAAAGGCATACGATACC-ACA-TGGAA-TACGGTATCTTAA--AAGAT-TTCATAATATTGGCCTTAAAGGACA-TCTGCCAAACTT-CATTCAGAATTT-CTAAGTAATA--GACATTTCAAT-GTA-CGCTTAGGTTC-AACAC-----T-TTCAGACAATTTTGAACAAGAAATGGGCGTTCCTCAAGGAAGTATTTTATCGGTCACATTATTTAGTATAAAAATAAACAG---T--CTGGC-TGAAGTTCTAAAAAAC--GAC--TCCATGGA-AGTCTAT-ATGTAGATGACTTTGTTCTATGTTATAAATCC-AA-A-AATAT---------GAATTCCA--TTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATTGGGC-TGAT-GTA---AATGG-TT-TTAAATTTTCCAGAAATAAAA-CCGCGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAC---CA-CGATGATCCACAATTGACTTTAGATGGGTCTCCAAT-TAAAGTTGTAAAAGAGATTAAGTTCTTAGGTGTCA-----TTTTCGATAATAAACTTTCGTTCAA--ACCTCATATAGC-------CATGCTCAAAGAA-AAATGTTCAAAGGCTCTTGATATAAT
gi|5 : CA-TGAAGATACGATATCTTAA--AAGATTTGCATAATATTGACCTTAAAGGACA-TCTACCAAACTT-CATTAACATTTTTCTAAGTAATA--GACATTTTAAT-GTA-CGCGTAGGATC-AACAC-----T-TTCAGACAATTTCGAACAAGAAATGGGCGTTGCACAAGGAGGTATTTTATCGGTTACATTATTTAGTATAAAAATAAACAA---T--CTGGC-TGAAGTACTAAAAAAAA-GACT-CCCATGGA-AGTCTAT-ATGTTGATGACTTTGTTCTCTGTTATAAATCC-AA-A-AACAT---------GAATGCCA--TAGAGC-GAA-AAT-TACAGCTACATGTATG-----TCT-----AAACAAA--TCCAAAATTGGGC-TGAT-GTA---AATGG-GT-TTAAATTTTCCAGAACTAAAA-CCGTGT-GTGTGCATTTCTGCT--CTAAACG-GAAA--CAT---CA-CGATGATCCACAGCTGACATTAGATGGGACTCCAAT-TAAAGTCGTAAAAGAGGTTAAGTTCTTCGGTGTTA-----TTTTTGATAATGAACTTTCGTTTAA--ACCTCATATAGC-------GATGCTCAAAG-AGAAATGTACAAAGACTCTTGATATAATA
gi|6 : agcaacattaatGTATACGAAAATCCTGGAAAACATTCGTATC--GTCTAAATTCGCATACTCCTATCAATAAAGGTTTGAAATGCAAT-GTATGGAAAACAAAAGGAAAAGGCTTCGGGGGAAATACTAACACCTAAAAGTAGAGAATCAAATAGTCATAGATAAAAACAATAAA-----------TCTAACAAAATATCTAATACAA-TTACTAAAAACGC-ATCAACAGACAATATGAGCACAAATTTTATCATGA-ACAA------ACAAGAACGGAAAACATTGGATTTTACATCTCAGAACAACGAATGTTATAACGAGCCATTTACTTATGATGAGTTACT-AAAATCCTTT-GAAAAGTCTCATGATACATCTGTAGGTCCGGACCAGA--TCCATT-ATGAAGTT-ATGACATTTCTTCCTAAGTC-CACCAAAGGATGTCTTCTACA-AAT--CTTCAGCA-TGATATTGGAGAGTGGTAATTTTCC--A-CCTTCCTGATCTCAAGCTACAATCATT-CCATTCCAAA-----ACAT--G---------------GG----AA---GGAT--TA--CT---AAGATC------CTAA-CAATTATCG-A-CCAATA-GCC-TTA
gi|7 : AGAACAGGCTGTATCCATATTTTTCGAACTTGGGAAAGGCAAATAATACG-ACT-TGGGGGCATTGTAT--TAATCAA-ATATGTATGGTATTAGTATCCATGGACAATATTCTATATTT-TGTAAAAAGTTC-TTAA--AAGAACGAGGTTTTTATAGT--TGCATAGGATC-CATTC-----T-CTCGGACAATTATGAAAATTACATGGGTATCTCATAAGGCAGTATTATATCG------TTATTTAGCATCAAAAT---TAGATCT--CTGGT-TAAAGTAATGAAAAA---CAATATTTAAGGC-AGTTTAT-TCGCTAATGATTTTGCTCTTTGCTGCAGATCT-GA-ATACTATGCTTAAACAGAATTCCAACATGAGCTGAT-AA--TATAGA-A------TG-----GCTTCAANAAACAGAATTCCAACA-TGAGC-TGATAATATATAATGG-CT-TCAAATTCTCTA-AATTTATA-CATCAT-CTGTGCA-TTCTA-TAACCAAATGAAAAA--CACATTCA-----GATCCTTTTTTAAATTTAGATGGAACTCC
gi|8 : GTAATTTCCCCCA-CCATCCCGGATGCAAGCTAC---CATT---ATTCCAAA-----A-AA--A--------AAAAAATGGA--AAA---GGACAACG--CA---AA--TC------CT-ATCAATTATCG-A-CCAATA-GCC-TTAA-CAAGCTGCATGTATGAAA--CCATGAAATGGATGATCACTGAACGCTTAGT-GTGG-TTTCTTGAACCTAATTACATTATACCAGATATATAAGGTGGTGTCAGGATAAATCAATGCACAATCGACCATTTAGTAAAACTTGCAACCCATATTCGAGA-TGC--TTGCTATTAAAGAGCATGTCGTCTCTCTCTC-------CTTATAAAGAACATAAGATACC-ATA-TGGAAATACGGTATC-------------TTATAAGATTGG-TTTAAAGGGCG-TTTGTCg
gi|8 : TAGGATC-TACATGTACGTATTTAGACAAGTTTGAACAAGAAATGGGCGtaggatctacatgtacgtatttagacaagtttgaacaagaaatgggcg
gi|9 : gtaatttcccccaccatcccggatgcaagctaccattattccaaaaaaaaaaaaatggaaaaggacaacgcaaatcctatcaattatcgaccaatagccttaacaagctgcatgtatgaaaccatgaaatggatgatcactgaacgcttagtgtggtttcttgaacctaattacattataccagatatataaggtggtgtcaggataaatcaatgcacaatcgaccatttagtaaaacttgcaacccatattcgagatgcttgctattaaagagcatgtcgtctctctctccttataaagaacataagataccatatggaaatacggtatcttataagattggtttaaagggcgtttgtcAGTACTAAAAAAC--GACT-TCCATGGA-AGTATAT-ATGCTGATGACT--GTTCTCTGTTATTAATCC-AA-T-AGTAT---------GAATTCCA--CTGAGC-GAA-AAC-TACAGCTA------TG-----TCT-----AAACAAAA-TCCAAAATAGGGC-TGAG-GTA---AATGG-GT-TTAAATTTTCTAGAACTGAAA-CCGCAC-ATATGCATTTCAGTT--TTAAACG-GAAA--TAT---CA-CAATGATCCATAGTTGACATTAGATGGGACTCAATT-TAAAGTTGTAAAAGTGGTTAAGTTCATAGGTGCCA-----T--------------TTTCGTTCAA--ACCTCCTATAGC-------AATGCTAAAAG-AGAAATGTACAAAGACATTTGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GAACAGGCTGTATCCATATTTTCCGAACTT