lowQualScore : 1111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 333 333 1 1111111111111111111111111111111111111111111111111 3333333333 777777777777777777777777777777777777777 11 444444 3333 1 4 555555555 55 2 2222 111 888888888888888888888888888888888 1 1 1 1 33 44444444444444 4444 77777777777777777777777777777777777777777777777777777777777777777 22222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 1111111 111 333333333333333 1 11 3 44444444444444 2 99999999 4 1 1 2 1 11 4 88888888 333 2 11 4 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222 5555555555555555555555555555555555555555555555555555555555555 11 11 1111 555555 3333 22 444 22 66666666666666666666 3 1 4444 1 1 3 333333333333333333333333333333333333333333333333333333333333333333333333333333 1 3333333 1 111 999999999999999999999999999999999999999999999 22222222 111 3333333 111 111 444444444444444444 11111111111 33 3333333333333333333333333333 44444444444444444444444444444444444444 2 444
lowQualScore : 4444 111 99 000 55 0 8 2222222222222222222222222222222222222222222222222 3333333333 00 000000000000000000000000000000000000000 3 44 1 11 2 000000 5555 5 0 6 666666666 55 6 6 8888 777 888888888888888888888888888888888 3 2 0 0 44 55555555555555 8 6 5555 3 2 77777777777777777777777777777777777777777777777777777777777777777 5 88888 5 1 4 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 77 8888 3 2222222 111 222222222222222 0 00 5 77777777777777 4 5 0 00000000 0 8 3 3 3 3 88 0 0 00000000 3 000 0 88 0 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 5 2 66666 3 9999999999999999999999999999999999999999999999999999999999999 22 11 7777 333333 44 6666 88 7 666 77 7 88888888888888888888 999 2 6 5 1111 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 0 0 8 2 8888888 9 66 111 8 444444444444444444444444444444444444444444444 99999999 6 111 6 99 5555555 44 4 555 555 666 999999999999999999 2 33 2 2 33 66666666666 3 7 55 1 0 2222222222222222222222222222 1 1 2 44444444444444444444444444444444444444 3 9 999
lowQualScore : .... ... .. ... .. . . ................................................. .......... .. ....................................... . .. . .. . ...... .... . . . ......... .. . . .... ... ................................. . . . . .. .............. . . .... . . ................................................................. . ..... . . . ........................................................................................................................................................... . .. .... . ....... ... ............... . .. . .............. . . . ........ . . . . . . .. . . ........ . ... . .. . . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . ..... . ............................................................. .. .. .... ...... .. .... .. . ... .. . .................... ... . . . .... . . . .............................................................................. . . . . . ....... . .. ... . ............................................. ........ . ... . .. ....... .. . ... ... ... .................. . .. . . .. ........... . . .. . . ............................ . . . ...................................... . . ...
lowQualScore : 8888 000 55 222 55 3 0 8888888888888888888888888888888888888888888888888 3333333333 88 777777777777777777777777777777777777777 5 66 0 77 5 000000 0000 0 0 0 000000000 00 7 7 3333 777 000000000000000000000000000000000 3 0 0 0 00 88888888888888 0 0 0000 2 5 33333333333333333333333333333333333333333333333333333333333333333 7 66666 7 4 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 99 2222 5 7777777 777 000000000000000 0 00 0 88888888888888 0 0 8 00000000 0 3 3 3 7 3 33 7 0 77777777 7 000 0 33 0 3 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 2 88888 1 7777777777777777777777777777777777777777777777777777777777777 66 00 0000 000000 00 3333 77 0 000 55 3 33333333333333333333 000 3 7 0 0000 0 0 0 999999999999999999999999999999999999999999999999999999999999999999999999999999 5 0 2 0 2 2222222 6 66 888 0 444444444444444444444444444444444444444444444 00000000 7 777 7 88 8888888 88 0 444 000 999 777777777777777777 4 22 4 4 22 44444444444 5 0 44 7 9 5555555555555555555555555555 9 9 1 99999999999999999999999999999999999999 6 1 777
consensus : NNNNNACTCGCCCT--A-GAC-AACTCG--CCCCT-AAG--ACAACTCG-CCCC-NAT-----T--AG-ACAA-CTC-G---CC--T-TA---AG-G--CA-ACTCGCCCC----C-----AAGACAACTCGTCCCCTC-TC---A-G------ACA-A-CT-CGCC-C-C-CTTT-CAGGAC--AACTCGCCCCCAATANANTAATCACGCTTACAANGTATTTTTTTAATTTATAATTCTGTAAT-TTTCTTT--TAGTTT-ATAATTCTAATATTTTGGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGGTCCCAACCGTTCCAAACCGCGTTT----AGC-T-GTGAAAC-------T-C--GTGT-AGGT-TGT---TCC-GCGAAGTCA-TCCCCTCTTTGATGTAAATTATTT-AATTAG-AGGA-GTAAAAAGCT-A-GAACTT-GG--TGAGG-CTCGTATTGGC----TATATAATTGGGTCTAC-GGTT-G-AGTAGTGTAATT-ATCAAT-TA-TCT-----ATA-A-CAGT-TTA--T-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---T----TATAT-----TTA-CTA---NCAAACGTTAGGG-G--CTACCCC--CATCT-TCGTCTCAATTCA-CT-TT-GAAAATGCCG----TGTANTAG----AAACA---AATT-A------GC-CGTTA--TAAANTTTC-TCAAAG---GAAA--TCCATG--ATTTTTTTTTC-NCA---AAAAA---TTT-----GTTGAAT--AAGAAA-CGCGTNAAA-AGATAA-------------TTACACGTATGTTAATATTCACGCTTCCAATTTACATT-AAC-GCAGT-ATA-CAT--ATC-ATTAAGCACCCAC-----CCNCA-CACTCCACCTCTGAAGA--CTTATTGAAGACATTTATTCAG-TAAATAT------ANT-----TTCT--ACTCGTT--TGAAAT-A---TAAAAATTATACTT--TTTTTCTGAAAT---CTCC----AAG----TTT--T-CAAT-ATCAA-TAGAA-TCCACCGTCCAAAT--AT---ATC--CGAACACA-ACA-ATA---ATT--TATG-T-ATGTA-TGT---ATCTTATANC-T--TTCCANTT---AGATCATGT--ATACA--CGTTCTACAT-GTA-TAGTA--C----CTGT-----TTGG-------CA----TTTGA-TCA-------ATAAANTT----TACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGT-TAT-TGG-CTTGGCTCAATTGCTC-A-GCGTG-ATCTATT--AGTATG-ATTATCAAT--T-A------CT--TTTA---A--TTTAATTGTTTGA-TT---C---CCANGTTA-TTATA-TTTA-TT-CAAAC--T-----TTAGGG-TACT-C-TCA---TCAC---TGTAGACTCAGT---TCAC------------------TTT----GAA----TACC---------------T----CA-ATAA------AATG-------------CAA--------G-TC---GTT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGA-----TTTTT---TCAACAAGAA--AT--GAGGTGAA-A----ACCGCACTAAAAAGATAACTAC--ATGTATGT----GAATA-TTTACGCTGAACC-GACATTTAC--TAATCACATTAACA-CATAAGAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACT-TTAAAAA-TTA-TATACATGTTN--------C-ATTTT--AA-T--TNTTTT--AAAAATACAAT--NTGTG-TATT-----ACA--TAAN--A-ANACGAACG-AGGT-GTCTATA----TATACTGTTTTAAAAAAA--GTG-TACAATC------ACA-------AAA-CAAA--------------CA-ACACACA--------A-AA---TAC-AGTTACA-TGTTAT--AG-T-GT-ATGTAATATT---GGG--GGCGAG-TTGTCCT-GA-AAG----G----G-G--GC-G-AGTT--GTCCT-GAGCTGAGA-GGG-G-CGAG-TT-GTCTTG----G----AG-A------NG------G-GGCGAGTT-GTC-CTG-AG-A--GG-G-ACGAGTTGTCTT----TG--GGGCGAGTTGTCTTA-GGGGCGAGTTGT--TCCAGCATT
Reference ( gi|1 ) : GGAATACTCGCCCT--A-GAC-A-CTCG--CCCTTGAAG--ACGACTCG-CCCC-AAT-----T--AG-ACAAACTC-G---CC--TACA---AGCG--CATGCTCGCCCC----C-----AAGACAACTCATCCCCTC-CT---A-G------AC--A-CT-CTCC-C-CACTTG-AAAGAC--AACTCACCCCTCATAGACT-A--ATGCTTACAAT-T-TTTTTTTAATTTATAATTCTTTAATATTCCTTTTATAATTTAATAATTCT--TATTTTGGCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-GTGTGT----AGC-T-GTGAAA--------T-C--ATGT-AGGTGTGT---TAC-GTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAG-AGGACGTAAAAAGCT-A-GAACTT-G---TGAGG-CCCGTATTAGC---GTATATAATTGGGTC-AC-A-TT-G-AGTAGT-TAATTGATCAATGTA-TCTG----ATA-ACCAGTGTTA--T-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---T----AATATA--ACTTA-CTA---CCAAACGTTAGGG-G--CTGCCTC--CAT-T-TCGTCTCAATTCA-C--TT-GACAAT--CG---ATGTACTAG----AAACA---AATT-A------GC-TGTT---TAAATTATC-TCAAAA---GAAA--TCCATG--ATTTTTTTTTC-CCA---AAAAA---TTT-----GTT-AAT--AAGAAA-CGCGCAAAACAGATAA-------------TTACA-GTATGTTAATATT--------CAATTT-CAAT-AAC-GCAGTAATA-CAT--ACCAATTAAGCACCCCCCCTCTCCCCA-C-CTCCACCTC-GAAGA--CTTATTGAAGAC-TTTATTCAG-TAAATAT------AAT----CTTCT--A-TCGTTTATGAAAT-ACTGTAAAA--TATACTTTCTTTTCCTGAAATAA-CTCC----AAG----TTTGGTGTAAT-ATCAA-TAAAA-TCCA-CATTCAAAC--AT---ATC--CAAACACACACA-ATA---ATTGGTATG-T-ATGTA-TGT---ATCTTATAAC----TTTCACTTTA-AGATCATGT--ATACA--CTATCTACAT-GTACTAGTATTC----CTGT-----TTGG-------CA----TTTGACTCA-------ATAAACTT----TACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGT-TAT-TGGCCTTGGCTCAATTGCTC-A-GCGT--ATCTATTGAAGTATG-A-TATCAATAAT-A------CT--TT-----A--TTTAATTGTTTGA-TT---C---CCAAGTTG-TTATA-TT-A-TT-CAAACTAT-----TTAGGGATACT-T-TCA---TTACA-GTGTAGACTCAGT---T-AC------------------TTT----GAA----T-CC---------------T----CA-ATAA------AATG-------------CAA--------G-T----GTT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGA-----TTATT---TCAACAAGAA--AT--GAAGTGAA-C----ACCGCACTATTAAGATTACTAC--ATGTATGT----GAA-A-TT-ACGCTGAACC-GACATTTAC-TTAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACT-T--AAAA-TTA-TATAC-TGTT---------C-ATTTT--A--T--TATTTT--AAAAATAAAAT--GTGT--TATT-----AC---TAAC--A-AGACAAACG-AGGT-GTTTAC-----TATACCGTTTTAAAAAAA--GTG-TACA-TCTA----ACA-------AAA-CAAA--------------CA-ACACACA--------A-AA---TAC-AGTTACA-TGTTAT-TAG-T-AT-ATGTAATATT---GGA--GGCGGA-TTGTCCT-GA-ACGT---A----G-G--GC-G-AGTT--GTCCT-GAGCTGAGA-GGG-G-CGA--TT-GTCTTG----G----AG-A------TG------G-GGCGAGTT-GTC-CTATAG-A--GG-G-ATGA-TTGTCTT----TG--GGGC-AGTTGTCTTA-GGGG-GAGTTGTTTTCCAGCATT
gi|4 : ACTCGCCCCTAA-GACAA-CTCG--CCCC--AAG--ACAACTCATCCCC-TCT-----TA-AG-AC-AACTC-G---CC--C----------------CT---TCT----C-----AAGACAACTCGTCCCCTC-TC---A-GCGCAGAACA-A-CT-GGCC-C-CCTTTT-CATGAC--AACTCGCCCC
gi|5 : tacgtgtacatgtatgtatgcatatcaattcaccggttaaatttaattgtttaattttccccaagtttttatatttacttcgaacgtaagggtactcatcatcatagactcagtttactttgaagccgccgagtaaaaatactcaataaaattaagtcgttctacgatttcccatatagaaatttcacgcatttaaaaacgcattaaaagataactacatgtctttgaatatttacgctgaacacatttacgtgatcacattaacacataagaaaaaaaaatcttatatttacttggagataagtaattataaattctagtcatttgaactataaaaattatatacatgttaaaggtttccatttaaatctgttttaatacaatctctgtattatataaataaaacgaggtgtctttatactgttttaaaaaagtgtacaatcacagaaacaagcacacacaaacatctttatatatagtgtgaaagACTCGCCCT--AAGACTA-CTCG--CCT---AAG---CAA-TCG-CCCC-AAT-----C--AGGACAA-CTC-G---CC--T-CA---AG-G--CAT-CTCGCCCC----------AAGACAACTCATCCC-TC-TT---A-GG-----ACCAA-CT-CGCC-C-CACTTG-AAAGAC--AACTCACC---CATAGAATAA--ATGCTTACAATGTATTTTTTTAATTTATAATTCTGTAAT-TTTCTTT--TAGTTT-ATAATTCTAATATTTTGGCTTTtgtccagc
gi|11 : tcaggacaACTCGCCCCTAA-GAC-ATCTCG--CCCTTCAA---ACAAC-CG-CCCC-CAC-----TTCAG-ACAA------------------------------CTCGCCCG----T-----AAGACACTTCA--CCCTC-CA---A-G------ACAAA-CT-CTAT-C-CCCTTA-TTAGACAGAACTCAACCCTCattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|16 : aggacaACTCGCCCT--A-GGCAA-ATCGT-CCCTCGCAGGAAC-ACTCG-CCCC---TTCTCGT--AG-ACAA--CC-G---CC--CAtcacgttcaaagacaacttcgcccctacaaaggtatcgctactttagattaccttttactctagttggttgataattgaccttatctgtaattaactttgttgttcatagtttaatttttggaatcttttt
gi|15 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaatatatattgtatgtaacatACTCGCCCT--A-GGCAA-ATCGTTCCCTCCCAG--A-AACTCG-CCCC---TTCTC-T--AG-AC-AACTC-G---CC--tg
gi|7 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggCT--G-GAC-AACTCG--CCCCT-AAG--ACAACTCATCCCC-TCT-----T--AGGACAA-CTC-G---CC--T------------------C-CTCT----C-----AAGACAACTCGCCCCCTC-TC---A-G------------CT-C--------------AGGAC--AACTCGCCCCtgt
gi|8 : aaatgaagtcgttatacgatttttcatatatcaatttcatgattttcaacaagaattgagtgaaaacgcactaaaagataactacatgtatgtatgtgaatatttacgctgaacttgacatttacgttaatcatattaacacatgaaaacaattcttatatatttcttttaatcatttacgtggagataagtaattataattcctagtcaattgaactttaaaaattatatacatgttccattttaaattttttaaaaatacaatctgtataaaacgaggtgtctttatattgttaaaaaaaagtgtacaatcacatattctgaaacaaacacacacaaaaaaatacagttacatgttatagttatatgtaatattCT--G-GAC-AACTCG--CCCCT-AAG--ACAACTCG-CCCC-AAca
gi|18 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntT--G-GAC-AACTCG--CCCCT-AAG--ACAACTCG-CCCC-CA---------AG-ACAA-CTC-G---TC--TCCTCTTAGGA--CA-ACTCGCTCCTTCTC-----AAGACAACTCACCCCCTC-TC---A-G------------CT-C--------------AGGAC--AACTCGCCCCCAATAcattc
gi|29 : aatacaattacagttatatgtaa-GAC-AACTCG--CCCCCTAAG--ACTACTCG-CCCCTAAT-----TCAGG-AC-AACTC-G---CC--TCTA---AGt
gi|21 : tcagG--CCCCT-AAG--ACAACTCG-CCCC-AA---------AG-ACAA-CTC-ATCCCC--TTTT---AG-G--AAAACTCGCCTC----CTCTTCAAGACAACTCGCCCCCTC-TC---A-G------
gi|18 : taag-----T--GG-ACAA-CTC-G---CC--CCTA---AG-A--CA-ACTCGCCCC----C-----AAGACAACTCGTCTCCTC-TT---AGG------ACA-A-CT-CGCT-C-C-TTCT-CAAGAC--AACTCACCCC
gi|17 : aatacaattacagttatatgtaatattgggggcgagttgtcctgagctgagag-----T--GG-ACAA-CTC-T---TC--CATA---AG-A--CA-ACTCATCCCATCTC-----GGGACAACTTGTCCTTTC-TT---A-GG-----AC--AACT-CGCCTC-CACTTT-AG-GAC--AACTCACCCCt
gi|10 : tgtgcaatattgggggcaagttgtcctgagagggtgcgagttgtcctgaagtgAAACTCCG---CCCCTA-A---AGCGACCA-ACTCGTCCCATT-CTTA--AGGACAACTCGCTCCCTC-CTCTAA-G------ACA-A-CTGCGCC-CACACTTGTCAGGAC--AACTCGCCTCCAATA
gi|7 : attaatataatgttgcccattgtcaattcttcttaaaaaatacaatatgtgatatttcatataaataaagatgaggaagtcgtttattatacttttaaaaaaagtgatacaatcgacaaaaaccaacacacaccacaaaaaaataccagttacaatgtatatatgtaaCTCGCCCC----T-----AAGACAACTCATCCCCTC-TT---AGG------ACA-A-CT-CGCC-T-C-CTCT-CAAGAC--AACTCGCCCCtccagccat
gi|12 : aaatgaagtcgttatacgatttttcatatatcaatttcatgattttcaacaagaattgagtgaaaacgcactaaaagataactacatgtatgtatgtgaatatttacgctgaacttgacatttacgttaatcatattaacacatgaaaacaattcttatatatttcttttaatcatttacgtggagataagtaattataattcctagtcaattgaactttaaaaattatatacatgttccattttaaattttttaaaaatacaatctgtataaaacgaggtgtctttatattgttaaaaaaaagtgtacaatcacatattctgaaacaaacacacacaaaaaaatacagttacatgttatagttatatgtaatattggggcgagttgtcctgagctgagagCTCGCCCC----T-----AAGGCAACTCGTCCCCTCTCC---AGG------ACA-A-CT-CGCC-C-CTTCTC-TAGGAC--AACTCGCCCCCAATAttgtccagca
gi|21 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaaCTCGCCCC----A-----AAGACAACTCATCCCCTT-TT---A-GGA----AA--A-CT-CGCCTC-CTCTT--CAAGAC--AACTCGCCCCttgtccagcattcc
gi|23 : taagctgagag-----AAGACAACTCGCCCCCAC-TTC--A-G------GTCAA-CT-CGCC-C-C-CTCT-CAGGAC--AACTCGCCCCCAATATATT-ATCACACTTATAAA-T-TTttgtcttaggggc
gi|3 : catGTATGGTTCCAACCATTCCAAACCGTGTTT----AGC-T-GTGAAAAACTCAAGTAC--ATGT-AGGT-T-T---TCC-GCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGAT-TAAAAAGCTAA-GAACTTGG---TGAGG-CTCGAATTAGC----TATATAATTGGGTCTAC-AGTTGG-AGTAGTGTAATTTATC-AT-TA-TCT-----ATA-A-CAGT-TTA--T-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTGT--T----ATTATA----TTC-CTA----CAAAGGTTAGGG-GTACT-CCTCATC-T-T-TCGT-TCAATTCA-CTTTT-GAAAATGCCG----TGTTATAG----AAACA---AATTAA------GC-TGTTTTATAAATT-TC-TCAAAA---GGAAATTCCTTG--ATTTTTTTTTT-TCA---CAAAA---TTA-----GTTGAAT--AAGAAA-CGCGTAAAA-AGATAA--------------TACACGTATGTTAATATTCACGCTTCCAATTTACAATAAAC-GCAGT-ATA-CAT--ACC-ATTAAGCACC--------CCTCA-CACTCCACCTC-GAAGA--CTTATTGAAGACATTTATTCAG-TAAATAT------ACT-----TTCT--ACTCGTT--TGAAAT-A---TAAAAATTATACTTT-TTTTTCTGAAAT-A-CTCC----AAT----TTT--TGTAAT-ATCAA-TAGAATTCCACCATTCAAAT--AC---A----CAAACACACACACATAAGTATT-CTATG-T-ATGTA-TGT---ATC-TATAGA----TT---CT---------ATG---ATACA--CGTTCTACAT-GTA-TA-TA----------------------------------TTGA-TCA-------ATAAA--T----TACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGT-TGTATGG-CTTGGCTCAATTGCTCTACACGTA-ATCTATT--AGTATG-ATTATCAAT--T--------CT--TTTATTAA--TTTAATTGTTTGATTT---C---CCACGTTATTTATT-TT-A-TT-CCAAC--T-----TTAGGG-TACT-TCTCGATCTTACACATGTAGACTCAGT---TCAC------------------TTTTGGAAAA----TACT---------------T----CA-ATGA------ATTGTAATTTTGATTTTCGA--------G-T----GTTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG------TTTTT---TC----AGAG--AT--GCAGCG
gi|24 : GCATGGTCCTAACAGTTCCAAAC-TCGTGTTCGAAGC-TGGTAAAAC-------T-CTAGTGTGAGGT-TGT---T
gi|5 : CAACCATTCCAGACCGTGTTT----AGCGT-GTGACAC-------T-C--AGGT-ACATGTGTGTTTCC-GTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAG-AGGA-GTAAAAAGCT-------TG-G---TGA-G-CTCGTATTAGC----TATATAATTGGGTCTAC-AGTG-G-AGTAGTGTAATTATCCAAT-TACTCT-----ATA-A-CAGT-TCA--T-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---T----TATATtctcgtgcgagtaat
gi|25 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatTGT---TTCTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAG-AGGA-GTAAAAAGAT-GTGGA--------TGAGG-CTCGtt
gi|9 : TATTT-AATTAG-AGGA-GTAAAAAGCT-A-GAACGT-GG--TGAGG-CTAGTATTGAC----TATATAATTGGGTCTACTG-TT-GGAGTGGTGTAATT-ATCAAT-TA-TCTACATTGTACATCAGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCT----TATAT-----TTA-C-G---TCAAACGT------------------CAT------CCTCAATTCA-CT-TT-GAAAATGCCG----TGCATT-G----AAACA---AATT-GT-----GCAGGTT---TAAAATTTC-TTAAAAG--GAAA--TCCATG---CTTTTTTTTC-ACC---AAAAA---TTA-----GTTGAAT--AAGA
gi|13 : AAAGCT-A-GTACTT-GGGGTGGGGGTTCTTATTGGCTTGGTTT-TAGTTGG--------------AGTAGTGTAATT-ATCAATTTA-T---------A-ATCAGTATAA--T---------T-GAATTTAA-----TT-A----------GCCAAGCTG---TT---AATAT------TA-ATA---GCAAACGTTAGG------TACCCC--TCT-C-TCGTCTCAA-TCACC--TT-GA-AATG-CGGAAATA-ATCAGCC--AAACA---A----A------GC-CGTTAG-TAAAT---------AG---GAAA--TTCTTG--ATTTGTTT------A---AAAAA---
gi|2 : -G-AGTAATGTAATT-ATCC---TA--CTT----ATG-AACAGTGTTA--T-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---T----TAT-TAGTATTTAACTAAATCTAAACAT-AGGC-G--C-GTTCT--CATCT-TCGTCTCAATTCA-CT-TT-GAAAATGCCG---GTAT----G----GAACA---CA--------------GTT---T---------TTAAAA---G-AA--TCCATGGAA---TTTTTTC-ACA---AAAAATGGTTT-----G---AAT--AAGAAACCGCGTAAAA-AGATAATACTATGTAATTGTTATA-GTAT-TCAATGCTTCC-----CAATTTACATT-AACGGCAGTAATATCATAAATC-ATTAAGCAGCCACCGCCCCCACATC-TTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTAAATAC------AGA----GTTCTACA-TCGTT----AAATGAGTGAAAAT--TAAACCT--TTTTAATGAAATACTCTCCCGAAAAGCTTCTTTTGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCTACAAAC-CA-------A---ATC--TAAG-T-A-GTA--GT---ATTTT-TAACTT--TTTCAGTTAT-AGATTATTTTAATACATGTTATCTACAT-GTATTAGGTTGT----CTGT-----TTGGCAATTGCCA----TTTGA-TCA-------AT--ATTTAAAGTACATGTACT--TCTAG-CAGT----AGTA-TGATAAG----------------GG---TAT-TGG-CTTGGCTCAATTG-TT-A-GCGT--ATCTATT--AGTATG-GTTATCAAT--T--------CT--TTAA---A--TCTAATTGGTTGA-TT---T---C----------ATATTT-A-TT-CAAAC--G-----TTAGGG-TACTCC-TCA---TTACACATGTAGACTCAGT---TCAC------------------TTG----AAA----T-AC---------------T----CA-ATAA------AATG--------------AA--------G-TC---GTT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGA-----TT-TT---TCAACAAGAA--TT--G-AGTGAA-A----ACCGCACTA-AAAGATAACTAC--ATGTATGT----GAATATTT-AAGCTGAGCgaattagtggaagaaa
gi|8 : -G-AGTAGTGTAATTATCCAAT-TACTCT-----ATA-AC-AGT-TCA--T-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---T----TATAT-----TTA-Caaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|4 : gTT-AAATTTAA-----TT-GTTTAATTTTCCCCAAGTTT---T----TATAT-----TTA-CT----TCGAACGTAAGGG-----TA-CTCATCAT-CATAGACTCAGTTTA-CT-TT-GA-AGC--CG---CCG-AGTAA----AAATACTCAA-T-A-----------------AAATTAAG-TC---------GT--TCTACG--A------TTTC-CCATATAGAAA---TTTCACGCATT---T--AA-AAA-CGCATTAAA-AGATAA-------------CTACATGTCTTTGAATATT--------TAatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|19 : tacgtgtacatgtatgtatgcatatcaattcaccggCAAGCTG---TTATTAATAT-----TCA-C-A---ACAAACGT-AGAGCG--CT-CCTC---ATCT-TCGTATCAATTCA-CT-TT-GAAAATGCCG----TGTA-TAGTTTTAAACA---AATTAA------GC-AGTTA--TAAAATTTCTTCAAAG---GAAA--TTCATcgctgaacacatttacgtgatcacattaacacataagaaaaaaaaatcttatatttacttggagataagtaattataaattctagtcatttgaactataaaaattatatacatgttaaaggtttccatttaaatctgttttaatacaatctctgtattatataaataaaacgaggtgtctttatactgttttaaaaaagtgtacaatcacagaaacaagcacacacaaacatctttatatatagtgtgaaagggggcgagttgtcatgaaaagggggccagttgttctgcgctgagaggggacgagttgtcttgagaaggggcgagttgtcttaagaggggatgagttgtcttggggcgagttgtcttaggggcgagttgtccagc
gi|14 : gcg--ATTTA-CTG---C-AAACATTAGGG-----TACCCCT-CATCT-TTGTCTCAATTCA-C--TTTGAAAATG-CC---ATGTAGCAA----TAATC---AGTC-AAAGAAAGA-CGTTA--TAAAATTTC-TCAAAGTAGGAAA--TTCATG--ATTTTTTTATCACCA---AGAA-----TT-----ATT-AGTTGAAGAAA-CGCATTAAA-AGATAA-------------TTACA--TATGT
gi|22 : attagtgacaataaatttattaaagataatgtttacacatAAAAGATAA-------------TTACATGTATGTTAATATTCATGCTTCCAATTTACATT-AAC-GCAGT-ATA-CAT--ATC-ATTAAGCACCCAC-----CCCCA-CACTCCAatgt
gi|20 : AGA--CTTATTGAAGACATTTATTCAG-TAAATATTAAGTAAATATAATTTCT--ACTCGTT--TGAAAT-A---TAAAAATTATACTT--TTTTTCTGAAAT----TCT------G----TTTG--------ATCAA-TAAAA-T
gi|6 : AT-CTCAA-TAGGA-TCTA-CGC-CAAACTAATCGGATC--TGAAAAGA-ACA-ATA---ATTCATATGATAATGTATTGTTCCACCTTAGATCGTTGTTCCAATTTATAGATCTTGTA-ATACA--TGTTCTACATGGTA-TAGTAGTCTCAACTGTGCCTATTGG-------CAAATTTTTGAATCACACGGATATAAAC------TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGT-TA--TGGACTTGGCTCGA--ACTC-G-G-GTGAATCTA
gi|26 : ----TTTGA-TCA-------ATAAAATT-----------ACT--TCTAGC-----------AGTAGTAGT----------------GAGTGTTT-TGG-CTTGTCTCATTTGC-A-A-GCGT--ATCTATTcataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|4 : tgGTATGCA-TATCAAT--TCA------CCGGTT-----AAATTTAATTGTTTAA-TTTTCC---CCAAGTTT-TTATA-TTTACTT-CGAACG--------TAAGGGTACT-CATCA---TCA------TAGACTCAGT---TTAC------------------TTT----GAA----G-CCGCCGAGTAAAAATACT----CA-ATAA------AAT--------------TAA--------G-TC---GTT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA---CG-------CATT---T-----AAAA--A-------------------CGCATTAA-AAGATAACTAC--ATGTCTTT----GAATA-TTTACGCTGAAC---ACATTTAC-GTGATCACATTAACA-CATAAGAAAAAAAAATCTTATAT------------------TTACTTGGAGATAAGTAATTATAAATTC-TAGTCATTTGAACTAT--AAAAATTA-TATACATGTTAAAGGTTTCC-ATTTA--AATC--TGTTTT--AA---TACAAT--CTCTG-TATT-----A----TATA--A-ATA-AAACG-AGGT-GTCT-T-----TATACTGTTTTAAAAAA---GTG-TACAATC------ACAG------AAA-CAAG--------------CA--CACACA--------A-A-------------CA-TCTT-------T-AT-ATATAGTGTGAAAGGG--GGCGAG-TTGTCAT-GA-AAAG---G----G-G--GC-C-AGTT--GTTCT-GCGCTGAGA-GGG-GACGAG-TT-GTCTT-----G----AG-A------AG------G-GGCGAGTT-GTC-TTA-AG-AG-GG-G-ATGAGTTGTC-T----TG--GGGCGAGTTGTCTTA-GGGGCGAGTTG---TCCAGC
gi|3 : tacgtgtacatgtat-TATCTATAAC-AGTTTATCT--TTTAA--A--TTTGATTGTTTGA-TT---TCCGCCAAGCTG-TTATT-AT-A-TT-C---CTACAAAGGTTAGGGGTACTCC-TCA---TC-----TTTCG-TTCAAT---TCAC------------------TTTTGA-AAA----TGCCGTG------------T----T--ATAG------AA-A-------------CAAATTAAGCTG-T----TTT-------A--TA--AATTTCTC-A-A--A-AGGAAATTCC--TTGATTTTTTTTTT---TC-ACA--AA--AT--TAGTTGAA-TAAGAAACGCG-TAAAAAGA-TAATAC--ACGTATGT----TAATA-TTCACGCTT--CC-A--ATTTAC---AATAA
gi|6 : gtatggttccaaccattccaaaccgtgtttagctgtgaaaaactcaagtacatgtaggttttccgcgaagtaatcccctctttgatgtaaattatttaattagaaggattaaaaagctaagaacttggtgaggctcgaattagctatataattgggtctacagttggagtagtgtaatttatcat-TC---C---CCACGTTA-GTATA-TTTA-TTACAAACT-------TTAGGG-TACT-A-TCT---CAATG-GTCCATACTTAGTAGAT-ACCACACACATTCACCATAATTT----GAA----TACC---------------T----CATATAA------ACTG-------------CGA--------A-TCGACGCTTGA----G--TAACGGATTCTCCATC-CATAGAAATTTCA--CTGA-----ATTTT---TTAGCAAGAA--ATTAGAGATGAA-A----ACCGCACTAacgcagtatacataccattaagcacccctcacactccacctcgaagacttattgaagacatttattcagtaaatatactttctactcgtttgaaatataaaaattatacttttttttctgaaatactccaatttttgtaatatcaatagaattccaccattcaaatacacaaacacacacacataagtattctatgtatgtatgtatctatagattctatgatacacgttctacatgtatatattgatcaataaattacatgtacttctagcagtactagtaatagggagttgtatggcttggctcaattgctctacacgtaatctattagtatgattatcaattcttttattaatttaattgtttgatttcccacgttatttattttattccaactttagggtacttctcgatcttacacatgtagactcagttcacttttggaaaatacttcaatgaattgtaattttgattttcgagtgttttcttccacctacgattcttcacactatagaaattttatcatgttttttcagagatgcagcg
gi|14 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaatATA-TTTA-CTGCAAAC-AT-----T-AGGG-TACC-CCTCA---T--CT-TTGT---CTCAAT---TCAC------------------TTT----GAAAATGC-CA---------------TGTAGCA-ATAATCAGTCAAAG-------------AAA--------GAC----GTT-------A--TA-AAATTTCTC-AAA-GT-AGGAAATTC---ATGA-----TTTTTTTATCACCAAGAATTAT--TAGTTGAAGA----AACGCATTA-AAAGATAATTACATATGTATGT----
gi|30 : attagtgacaataaatttattaaagataatgtttacacAA------AATG--------------AA--------G-TC---GGT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGA-----
gi|7 : A------AATG--------------AA--------G-TC---GTT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGA-----TT--T---TCAACAAGAA--TT--GA-GTGAA-A----AC-GCACTAA-AAGATAACTAC--ATGTATGTATGTGAATA-TTTACGCTGAACTTGACATTTACGTTAATCATATTAACA-CAT--GAAAACAAT-TCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACT-TTAAAAA-TTA-TATACATGTT---------CCATTTT--AAAT--T-TTTT--AAAAATACAAT--CTGT------------------AT--A-A----AACG-AGGT-GTCT-T-----TATATTGTTA-AAAAAAA--GTG-TACAATC------ACATATTCTGAAA-CAAA--------------CA--CACACA--------A-AAAAATAC-AGTTACA-TGTTAT--AG-TTAT-ATGTAATATT---GG-----------------------------------G--GC-G-AGTT--GTCCT-GAGCTGAGA-GGG-GGCGAG-TT-GTCTTG---------AG-A------GG------A-GGCGAGTT-GTC-CTA-AG-A--GG-G---GA-T----------------G--AGTTGTCTTA-GGGGCGAGTTG---TCCAGCA
gi|2 : AAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGAGA-TAAGTAATTATA-ATTCCTAGTCAATTGAACT-TTAAAAA-TGA-TATACATGTTC--------C-ATTTT--A--T--TTTTTT--TAAACTACAATCAGTG---TATT-----A
gi|10 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcA-TTAATATAA-TGTTGCC------C-ATTGTCAA--T--TCTTCTTAAAAAATACAAT--ATGTGATATT-----TCATATAAATAA-AGATGAG-G-AAGTCGTTTAT-----TATAC--TTTTAAAAAAA--GTGATACA-ATCG----ACA-------AAA---AC--------------CA-ACACACACCACAAAAA-AA---TACCAGTTACAATGT------A-T-AT-ATGTAATATT---GGA--GGCGAG-TTGTCCT-GACAAGT---GT---G-G--GC-GCAGTT--GTCTTAGAG--GAG--GGA-G-CGAG-TT-GTCCTT----A----AGAA------TG------G-GACGAGTTGGTCGCTTTAG-G--GG-
gi|12 : TTTT--A--TACTGTTT-----AAATAA-----GTGT--TATTTTTGTACAA-TAAC--AGAAACAAACACACGT-AAATACA----TATAC-----------AA--CTA-TACA-TCTATTTCCCA-------AAA-AAAAAGTGGGGGGGGGGGTA-ACGTGTG--------ATAA---TAT-AATTA-----TTAT-T---T-GT-ATGTAATATT---GGG--GGCGAG-TTGTCCT-AG-AGAA---G----G-G--GC-G-AGTT--GTCCT-G----GAGA-GGG-GACGAG-TT-GCCTTA--------------------G------G-GGCGAGTT-GTC-Ccggagttttccagccat
gi|8 : aaacgaggtgtT-ATTTACATATATATACTGTTTTAAAAAAAAAGTG-TACAATC------ACA-------AAAACAAA--------------CACACACAAA--------A-AA---TAC-AGTTACA-TGTTA--TAGTT-AT-ATGTAATATT---GGANNNNNNNN-NNNNNNN-NN-NNNN---N----N-N--NN-N-NNNN--NNNNN-NNNNNNNNN-NNN-N-NNN--NN-NNNNNN----N----NN-N------NN------N-NNNNNNNN-NNN-NNNNNN-N--NN-N-NNNN-NNNNNTT----TG--GGGCGAGTTGTCTTA-GGGGCGAGTTG---TCCAGCATTagcattcc
gi|18 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgtta-AA---TAC-AATTACA--GTTAT----------ATGTAATATT---GG---------------------------------G-G--GC-G-AGTT--GTCCT-GAGCTGAGAGGGG-G-TGAG-TT-GTCTT-----G----AG-A------AG------G-AGCGAGTT-GTC-CTA-AG-A--GGAG-ACGAGTTGTCTT----GG--GGGCGAGTTGTCTTA-GGGGCGAGTTGTc
gi|23 : TTAT-AAG-T-GTGATAATATATT---GGG--GGCGAG-TTGTCCT-GA-GAG----G----G-G--GC-G-AGTT--GACCT-GAAGTG----GGG-G-CGAG-TT-GTCTTccat
gi|16 : cataaatTATATAT-T-GT-ATGTAACATT---G----GGCGG--TTGTCT-----ACG----AGAAGG-G--GC-G-AG-T--GTTC-----CTGCGA-GGG-A-CGAT-TT-GCC----------------------TA------G-GGCGAGTT-G
gi|15 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaa-T-GT-ATGTAACTTT---GG---GGCGAG-TTGTCTA-GAGAAG---------G-G--GC-G-AGTT---T-------CTGGGA-GGGAA-CGAT-TT-GCC----------------------TA------G-GGCGAGTT-GT
gi|17 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataatT-GTGCAATATT---GGG--GGCAAG-TTGTCCT-GA-G------A----G-GGTGC-G-AGTT--GTCCT-GAAGTG----GGG-G-TGAG-TT-GTCCTA----A----AG--------TG------GAGGCGAGTT-GTC-CTAAGA-A--AG-G-ACAAGTTGTCCCGAGATG--GGATGAGTTGTCTTATGGAA-GAGTTGT
gi|29 : TT---AGA--GGCGAG-TTGTCCT-GA-AT-T---AG---G-G--GC-G-AGTA--GTCTT--AG-------GGG-G-CGAG-TT-GTCCTG----cca
gi|11 : tT---AGG--GGCGAAGTTGTCTTTGA-ACGTGAGA----G-G--GTTG-AGTTCTGTC-T-AA--TAAGG-GGA-T-AGAGTTT-GTCTTG----G----AG-GGTGAAGTGTCTTACG-GGCGAGTT-GTC-TGA-AGTG--GG-G-GCGG-TTG--TT----TGAAGGGCGAGATGTCTTA-GGGGCGAGTTGTg
gi|21 : agg---GGG--GGCGAG-TTGTCTT-GA-AGAG---G----A-G--GC-G-AGTT--TTCCT-AA----AAG-GGG-A-TGAG-TT-GTCTT--------------------TG------G-GGCGAGTT-GTC-TTAcaaaggtatcgctactttagattaccttttactctagttggttgataattgaccttatctgtaattaactttgttgttcatagtttaatttttggaatcttttt
gi|5 : taagctgaga--GGTGAG-TTGTCTT-TC-AAGT---G----G-G--GC-G-AGTT--GGTC-----CTAAGA-GGG-A-TGAG-TT-GTCTTG----GGGCGAG-A------TGCCTTG-A-GGCGAGTT-GTC-CT---G-ATTGG-G-GCGA-TTG-CTT----AG--GCG--AGTAGTCTTA-GGGC-GAGTTGTggggc
gi|29 : tcaggT---A----GAG--GC-G-AGTT--GTCCT-GAATT---A-GGG-G-CGA--GTAGTCTTA----G---------------G------G-GGCGAGTT-GTC-CTcatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|23 : tc----G-G--GC-G-AGTT--GTCCT-GAG---AG--GGG-G-CGAG-TT-GACCTG----A----AG-T------GG------G-GGCGAGTT-GTC-TTag
gi|28 : cataaatttataagtgtgataatatattgg----G-G--GC-G-AGTT--GTCCT-GATTTGAGA-GGGAG-CGAG-TT-TTTCTG----G----AG-A-------A------G-GGTGAGTT-GTC-C
gi|21 : ggT-AAGCTGAGA-GGG-GGCGAG-TT-GTCTTG----A----AG-A------GG------A-GGCGAGTT-TTC-CTAAAA-G--GG-G-ATGAGTTGTCTT----TG--GGGCGAGTTGTCTTA-GGGG-
gi|12 : -GGG-G-CGAG-TT-GTCCTA----G----AG-A------AG------G-GGCGAGTT-GTC-CTGGAG-A--G---------------------G--GGACGAGTTGCCTTA-GGGGCGAGTTG---TCCAGCATTc
gi|23 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattg-GGG-G-CGAG-TT-GTCCTG---------AG-A------GG------G-GGCGAGTT-GAC-CTGAAGTG--GG-G-GCGAGTTGTCTT----cc
gi|28 : cataaatttataagtgtgataatatattg-GGG-G-CGAG-TT-GTCCTGATTTG----AG-A------GG------G-AGCGAGTT-TTT-CTGGAG-A--AG-G-GTGAGTTGTC
gi|15 : g-GGG-G-CGAG-TT-GTCT-A----G----AG-A------AG------G-GGCGAGT---TT-CTG-GG-A--GG-GAACGATTTGCC------TA--GGGCGAGTTGTc
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttGG-G-CGG--TT-GTCTAC----G----AG-A------AG------G-GGCGAGTG-TTC-CTGC-G-A--GG-G-ACGATTTGCC------TA--GGGCGAGTTG
gi|32 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaatatatattgtatgtaacattTGTCTTA-GGGGCGAGTTG---TCCAGCATT
gi|31 : GTCTTA-GGGGCGAGTTGT---CCAGCATTcct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 1 2222 11 11 1 1 22 1 11 111 111 333333 22222222222 555555555555555555 11111 22 44444444 44444444 1 33 1 222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 555555555 1 2 1 111111 11 1 1 1 1 22222222 1 222222 22222 2222 111 222222 1 33333333333 11 222222222 11111 2222222 11 111 1111 2222 1 1 1111 11 11 11 1 1 1 111 1 11 1 44444444444 11 2 11 44444444444 1 1111 11 111 333 1 11 8888888888888888888888888888 111 1111 11 111 1 2 1 22222222 2222 11 111 666666666666666666666 222 11 1 99999999999999999999999999999999999999 2222222 1111 3333 11 11 11111 5555555555555555 11111 3333 111 3333333333333333 111 111 111 6666666666666666666666666 22222 22222 1111 555555555555555 1 44444444444444 1111 3333333333 22 111 11111 1 2 2222 22 44 1 33 111 1 1 333333333333 1 11 11 4444444 1111 333 333333333 11 3333333 222 222222 11 22222 1 11 11 1 11111 111
lowQualScore : 2222 6 0000 7 44 1 88 1 3 3 77 3 77 999 8 8 333 000000 8 22222222222 2 8 777777777777777777 1 1 9 00000 0 99 88888888 88888888 3 4 11 3 6 7 7 333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 2 22 6 33 111 666 444444444 0 0 2 8 0 3 8 8 8 333333 55 6 8 0 0 6 5 1 1 5 5 1 5 1 5 5 44444444 1 77 000000 5 88888 5 1 888 3333 666 5 111111 2 22222222222 555 0 0 5 33 666666666 44444 3333333 1 44 5 1 5 5 000 5 5 0000 1 3333 0 1 8 0 9999 11 33 2 44 0 3 4 0 0 111 0 33 0 44444444444 1 3 33 3 33 3 77777777777 0 8888 22 777 111 3 0 33 1 9999999999999999999999999999 8 000 0000 33 777 3 0 8 0 0 3 44444444 1111 3 33 777 3 3 1 555555555555555555555 777 33 0 33333333333333333333333333333333333333 8 8 6666666 7777 0000 1 0 11 55 77777 0 3333333333333333 1 3 8 8 0 55555 6666 111 66 3333333333333333 8 444 1 8 444 8 3 44 0 88 8 8 111 8 8 6666666666666666666666666 00000 8 3 00000 7777 000000000000000 0 3 8 55555555555555 4 2222 0000000000 5 5 5 33 999 11111 3 99 8 7 1111 3 3 22 55 3 00 777 3 0 2 0 3 8 0 888888888888 8 0 8 1 11 0 0 1 88 444 5555555 4444 0 000 8 1 77 1 777777777 5 33 5 5 5555555 5 666 666666 4 5 0 777 0 5 88 2 0 1 66 1 555 22222 3 0 55 1 3 3 3 3 66 2 3 3 88 5 11 5 0 77777 4 888
lowQualScore : .... . .... . .. . .. . . . .. . .. ... . . ... ...... . ........... . . .................. . . . ..... . .. ........ ........ . . .. . . . . ... ................................................................................................. . . . .. . .. ... ... ......... . . . . . . . . . ...... .. . . . . . . . . . . . . . . . ........ . .. ...... . ..... . . ... .... ... . ...... . ........... ... . . . .. ......... ..... ....... . .. . . . . ... . . .... . .... . . . . .... .. .. . .. . . . . . ... . .. . ........... . . .. . .. . ........... . .... .. ... ... . . .. . ............................ . ... .... .. ... . . . . . . ........ .... . .. ... . . . ..................... ... .. . ...................................... . . ....... .... .... . . .. .. ..... . ................ . . . . . ..... .... ... .. ................ . ... . . ... . . .. . .. . . ... . . ......................... ..... . . ..... .... ............... . . . .............. . .... .......... . . . .. ... ..... . .. . . .... . . .. .. . .. ... . . . . . . . ............ . . . . .. . . . .. ... ....... .... . ... . . .. . ......... . .. . . ....... . ... ...... . . . ... . . .. . . . .. . ... ..... . . .. . . . . . .. . . . .. . .. . . ..... . ...
lowQualScore : 7777 0 0000 3 00 0 33 0 3 3 77 3 22 000 0 0 000 888888 0 88888888888 8 0 888888888888888888 0 0 0 88888 8 22 33333333 33333333 3 7 77 3 7 3 3 333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 55 0 88 000 222 222222222 0 0 5 0 0 5 0 0 0 000000 88 7 0 8 8 4 7 4 4 7 7 4 7 4 7 7 66666666 4 99 777777 7 66666 7 4 888 3333 777 0 777777 0 33333333333 999 7 1 7 11 111111111 33333 7777777 7 66 7 0 7 7 000 7 7 0000 0 8888 0 0 0 6 6666 00 88 5 22 0 2 0 0 0 000 0 88 0 22222222222 0 2 88 7 88 2 55555555555 0 0000 55 000 222 2 0 88 2 5555555555555555555555555555 0 000 2222 88 555 2 5 8 0 0 2 55555555 2222 2 22 555 2 2 0 555555555555555555555 000 88 0 55555555555555555555555555555555555555 0 0 0000000 0000 4444 0 8 00 00 88888 8 0000000000000000 4 8 0 0 8 88888 0000 888 88 8888888888888888 0 000 0 0 000 0 8 66 8 88 0 0 666 0 0 4444444444444444444444444 00000 0 2 00000 0000 000000000000000 8 2 0 11111111111111 3 1111 9999999999 7 7 7 44 777 88888 7 22 2 8 2222 2 2 00 00 3 77 000 0 0 5 0 2 0 8 888888888888 0 6 0 0 00 8 6 0 00 555 2222222 2222 7 000 4 7 99 7 111111111 7 66 7 7 7777777 7 111 444444 4 0 2 111 1 0 88 2 8 1 11 9 333 99999 0 7 88 9 3 3 3 3 33 2 3 6 11 0 99 0 0 00000 0 999
consensus : NNNNNACTCGCCCT--A-GACA-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCA-NCTCGCCC-CCAAGAC-AACTC-GTCCCCTC-T-TAGA--C--AACTC-GCCCCACT----TTC-AAGACAAC-TCGCCCC-----------CAA----TANANTAATCAC-GCTTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT--TAGTTT-ATAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTC-GG------TGT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---CAGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAA-----CAAAT-T-A-GCCGTTA-TA-AAATTTC-TC-AA---A-GGAAAT-CCATG--ATTTTTTTTTCACAAAAAATT-N--GTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGT-A-TA-CATA--CC-ATTAAGCACCCAC-----C---CCCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCA-----------GT-AAATATAA-T-TTCTAC-TCGTT--TGAAATA---TAAAAATTATAC-TT--TTTTTCTGAAATA--CTCC----AAG----TTT--TG--TAAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACACACACA-ATAA----TC--TATGT----ATGTA-TGT---ATCTTATAAC-T--TTC-CANT---T--A--GATCATGT--ATACACGTT--CTACAT-GTA-T-AG--TA-TC----CTGT-----TTGGCAA-T----TTTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGG-CTTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAAC--TTTAGGG-TAC-T--C-TC-A----TC---ACACAT--GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GAG-TGAAAACCGCACTAAAA-GATAACTACATGT----ATGTGAATATTTACGCTGAAC-CGACATTTACG-TAATCACATT-AACACAT--GAAAAAAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATAA-AATA-AAACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG---------TG-TACAATC--A-C-AG------AAA-CAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TAG-TGTATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGAGAGGGG-GCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GACAACTCGCCCCT-AAGACAACTCGCCCCNA--TTAG-ACAA-CTCGCCT-TAAG-GCA-ACTCGCCC-CCAAGAC-AACTC-GTCCCCTC-T-CAGA--C--AACTC-GCCCC-CT----TTC-AGGACAAC-TCGCCCC-----------CAA----TANANTAATCAC-GCTTACAANGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT--TAGTTT-ATAATTCTAATATTTTGG---CTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGGTCCCAACCGTTCCAAAC-CGCGTTT--AGC-T-GTGAAA--CTC--G------TGT-AGGT-TGTT-CCGCGAAGTCA-TCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTGGC-TATATAATTGGGTCTACGGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---CAGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAA-----CAAAT-T-A-GCCGTTA-TA-AANTTTC-TC-AA---A-GGAAAT-CCATG--ATTTTTTTTTCNCAAAAAATT-T--GTTGAATAAGAAAC-GCGTNAAA-AGATAATTAC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACATTAA-CG-CAGT-A-TA-CATA--TC-ATTAAGCACCCAC-----C---CNCACAC--TCCACCTCTGAAGACTT--ATTGAAGACATTTATTCA-----------GT-AAATATAN-T-TTCTAC-TCGTT--TGAAATA---TAAAAATTATAC-TT--TTTTTCTGAAAT---CTCC----AAG----TTT--T---CAAT-ATCAATAGA-A-TCCACCGTCCAAAT--AT---ATCCGAACACA-ACA-ATAA----TT--TATGT----ATGTA-TGT---ATCTTATANC-T--TTC-CANT---T--A--GATCATGT--ATACACGTT--CTACAT-GTA-T-AG--TA--C----CTGT-----TTGGCA-------TTTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGG-CTTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TTAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAAC--TTTAGGG-TAC-T--C-TC-A----TC---AC---T--GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GAGGTGAAAACCGCACTAAAAAGATAACTACATGT----ATGTGAATATTTACGCTGAAC-CGACATTTAC--TAATCACATT-AACACATAAGAAAAAAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATNTGTG-TATTACATAANAANACGAACGAGG----TGTCTATATATACTGTTTTAAAA--AAAG---------TG-TACAATC--A-C-A-------AAA-CAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTA-TAG-TGTATGTAATATTGG--GGGCGAGTTGTCC-T-GAAA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGAGANGGG-GCGAGTTGTCC-TG-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GACA-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-C-TAGA--C---ACTC-TCCCCACT----TGA-AAGACAAC-TCACCCC-----------TCA----TAGACTAAT----GCTTACAA--TTTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTTTATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAA--CGTGTGT--AGC-T-GTGAAA---TC--A------TGT-AGGTGTGTT-ACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTA-GAACTT-G--TGAGG-CCCGTATTAGCGTATATAATTGGGTC-AC-ATT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----AC--CAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAAT----ATAACTTA-CTAC---CAAACGTTAGGG-GCTGCCTC-CAT-T-T-CGTCTCAATTCAC-TT-GACAAT--CGATGTACT-AG----AAA-----CAAAT-T-A-GCTGTT--TA-AATTATC-TC-AA---A-AGAAAT-CCATG--ATTTTTTTTTCCCAAAAAATT-T--GTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATT---------C-AATTT-CAATAA-CG-CAGTAA-TA-CATA--CCAATTAAGCACCCCCCCTCTC---CCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCA-----------GT-AAATATAA-TCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAA-CTCC----AAG----TTTGGTG--TAAT-ATCAATAAA-A-TCCA-CATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTA-TGT---ATCTTATAAC-T--TT--CACT---TTAA--GATCATGT--ATACACTAT--CTACAT-GTACT-AG--TATTC----CTGT-----TTGGCA-------TTTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTATTGAAGTATGA-TATCAATAAT-A-CT--T---T--AT-TTAAT---TGTTTGA-TT---CCC-AAGTTGTTATA--TTA-TT-CAAACTATTTAGGGATAC-T--T-TC-A----TT---ACAG-T--GTAGA-----CTCA-GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATG-------------CAAGT-G----TT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGATTATTTCAACAAGAAAT--GAAGTGAACACCGCACTATTAAGATTACTACATGT----ATGTGAA-A-TTACGCTGAAC-CGACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C--ATT-TT-AT-TATTTT--AAAAATAAAATGTGT--TATTAC-TAACAAGACAAACGAGG----TGTTTAC-TATACCGTTTTAAAA--AAAG---------TG-TAC-ATCTAA-C-A-------AAA-CAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTATTAG-TATATGTAATATTGG--AGGCGGATTGTCC-T-GAAC-GTAGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A-TTGTCTTGGAGATGGG-GCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG--------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATAAATAAAGATGAGGAAGTCGTTTAT-TATACT--TTTAAAA--AAAG---------TGATACAATCG-A-C-A-------AAAACCAACA--CACACCACAAAAAA-ATACCAGTTACAATGT-A-TA----TATGTAATATTGG--AGGCGAGTTGTCC-T-GA---------CAAG-TGT--------------GG-G-CGCAGTTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GACATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACA-CTTCACCCTCCAAGACAAACTCTATCCCCTTAT-TAGA--CAGAACTCAACCCT-CTCACGTTCAAAGACAACTTCGCCCC-----------T-A----CAAAGGTATCGCTACTT-TAGATTACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTG-TTGTTC-ATAGTT-TAAT-TTTTGGAATCTTTcat
gi|12 : aggacaAACGAGG----TGTTT-T-TATACTGTTT--AAA--TAAGTGTTATTTTTG-TACAATA--A-C-AG------AAA-CAAAC--ACACGT-------AA-ATAC-ATATACA-tt
gi|12 : aA-ATAT-AATTA-----TTA-T-T-TGTATGTAATATTGG--GGGCGAGTTGTCC-TAGAGA-A-GGGGCGAGTTGTCCTG----GAGA-GGG-GACG-AGTTGCCTT-----AGGG-GCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTA-GTACTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--CAGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTA-----ATA--TTA-ATAG---CAAACGTTAGG----TACCCC---TCTCT-CGTCTCAA-TCACCTT-G-AAATGCGGAAATAATCAGCC--AAA-----CAA-----A-GCCGTTAGTA-AAT-------------A-GGAAAT-TCTTG--A--TTTGTTTAAAAAAGAATT-A--GTGGAAGAAagcattcc
gi|14 : AT----AT---TTA-CT-G---CAAACATTAGGG---TACCCCTCATCT-T-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGC-AA----TAATCAGTCAAAGAA-A-GACGTTA-TA-AAATTTC-TC-AAAGTA-GGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTG---AAGAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacAGG----TGTTTGT-TATACTG-TTTAAAT--AATGATTTT----TG-TACAATA--AGC-AG------AAA-CAAAC---CACGT------AAT-AT
gi|15 : aaaagaCA-ACTCGCCC-T--AGGC-AAATC-GTTCCCTC-C-CAGA-----AACTC-GCCCC-TT----CTC-TAGACAAC-TCGCCCCAAAGTTACATACAATTATTATATTGATCAC-ACGTACtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtgggggggggTA-TAT-TGTATGTAACATT----GGGCG-GTTGTCTAC-GAGA-A-GGGGCGAG-TGTTC----CTGCGA-GGG-A-CG-ATTTGCCT-------AGG-GCGAGTTGt
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataTGTGCAATATTGG--GGGCAAGTTGTCC-T-GAGA-G-GGTGCGAGTTGTCCTGAAGTG----GGG-G-TG-AGTTGTCCTAAAGTGGAG-GCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTA-TA------TGTAATATTGG--GGGCGAGTTGTCC-T-GA----------------------GCTGAGA-GGG-GGTG-AGTTGTCTT-GAGAAGGA-GCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTATTAATAT---TCA-C-AA---CAAACGT-AGAGCGCT--CCT-CATCT-T-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-T-AGTTTTAAA-----CAAAT-TAA-GCAGTTA-TA-AAATTTCTTC-AA---A-GGAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---CAGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTATTAGTAT---TTAACTAAATCTAAACAT-AGGC-GC-GTTCT-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT---G----GAA-----CA----------C---------AGTTTT-TA-AA---A-G--AAT-CCATGGAATTTTTT---CACAAAAAATG-G--TTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGT-AATATCATAAATC-ATTAAGCAGCCAC-----CGCCCCCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCA-----------GTTAAATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CT--TTTTAATGAAATACTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACA-A-ACC-A-AA----TC--TAAGT----A-GTA--GT---ATTTT-TAAC-T--TTTTCAGT---T--ATAGATTATTTTAATACATGTTATCTACAT-GTA-TTAGGTTG--T----CTGT-----TTGGCAATTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGG-CTTGGCTCAATTGTT--A-GCGT----ATCTATT--AGTATGGTTATCAAT--T---CT--T---TAAAT-CTAAT---TGGTTGA-TT---TC----------ATA-TTTA-TT-CAAAC--GTTAGGG-TAC-T--CCTC-A----TT---ACACAT--GTAGA-----CTCA-GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG--------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA--GAAATTTCA---TGATTTTT-CAACAAGAATT--GAG-TGAAAACCGCACTAAAA-GATAACTACATGT----ATGTGAATATTTAAGCTGAGC-
gi|2 : AAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTTC--------C--ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGTAAATATTAAGT-AAATATAA-T-TTCTAC-TCGTT--TGAAATA---TAAAAATTATAC-TT--TTTTTCTGAAAT----TCT------G----TTT---------G-ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AGTTGTCTTGAAGAGGAG-GCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGT-A-TA-CATA--TC-ATTAAGCACCCAC-----C---CCCACAC--TCCA
gi|23 : AAGAC-AACTC-GCCCCCAC-TTCAGGT-C--AACTC-GCCCC-CT----CTC-AGGACAAC-TCGCCCC-----------CAA----TATATT-ATCAC-ACTTATAA---ATTT
gi|24 : catGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAG------TGTGAGGT-TGTT-TCTCG
gi|25 : TT-CTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAAAG------ATGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : tgt-------TTTG-A-TCA-------ATA----AAAT-------TACT--TCTAG-CAG-------TAGTAGT-GA----------------GTGTT-T-TGG-CTTGTCTCATTTGC-A-A-GCGT----ATCTATT--
gi|28 : tg-G-GGGGCGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTGGAGAA-GG-GTGAGTTGTCC-
gi|29 : -GAGGCGAGTTGTCCTGAATT---A-GGG-G-CG-AGTAGTCTT----AGGGG-GCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTC--AAGTACATGT-AGGT-T-TT-CCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAACTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---CAGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTATT---ATA--TTC-CTA----CAAAGGTTAGGG-G-TACTCCTCATCT-TTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTAT-AG----AAA-----CAAAT-T-AAGCTGTTT-TATAAATTTC-TC-AA---AAGGAAATTCCTTG--ATTTTTTTTTTTCACAAAATT-A--GTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGT-A-TA-CATA--CC-ATTAAGCACCC-----------CTCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCA-----------GT-AAATATAC-T-TTCTAC-TCGTT--TGAAATA---TAAAAATTATACTTT--TTTTTCTGAAATA--CTCC----AAT----TTT--TG--TAAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTA-TGT---ATC-TATAGA-T--T------------------CTATG---ATACACGTT--CTACAT-GTA-T-A---TA------------------------------TTG-A-TCA-------ATA----AA--TTACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGTTGTATGG-CTTGGCTCAATTGCTCTACACGTA---ATCTATT--AGTATGATTATCAAT--T---CT--TTTATTAAT-TTAAT---TGTTTGATTT---CCC-ACGTTATT-TATTTTA-TT-CCAAC--TTTAGGG-TACTT--C-TCGA----TCTT-ACACAT--GTAGA-----CTCA-GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGT-G----TTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG-TTTTTTC----AGAGAT--Gtaag
gi|30 : AAAATG--------------AAGTCG----GT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGAcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT----GTATGCATATCAAT--TCA-CCGGT---TAAAT-TTAAT---TGTTTAA-TTTTCCCC-AAGTTTTTATA-TTTACTT-CGAAC--GTAAGGG-TAC-T--CATC-A----TC---A--------TAGA-----CTCA-GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT--------------TAAGTCG----TT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA--CGCATTT----------------------AAAAACGCATTAAAA-GATAACTACATGT----CTTTGAATATTTACGCTGAAC---ACATTTACG-TGATCACATT-AACACATAAGAAAAAAAAATCTTATAT------------------TTACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC--ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATAA--ATA-AAACGAGG----TGTCT-T-TATACTGTTTTAAAA--AA-G---------TG-TACAATC--A-C-AG------AAA-CAAGCA--CACAC------AAACATCT---TTATA-T---A-TAG-TGT--GAAA----GG--GGGCGAGTTGTCA-T-GAAAAG-GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AGTTGTCTTG-AGAAGGG-GCGAGTTGTCT-TA-AG-A--GG-GGATGAGTTGTCTT-----GGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTACTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCA-TCTCGCCC-C-AAGAC-AACTC-ATCCC-TC-T-TAGGACC--AACTC-GCCCCACT----TGA-AAGACAAC-TCACCC--------------A----TAGAATAA--AT-GCTTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT--TAGTTT-ATAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTCAGG------TAC-ATGTGTGTTTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAG-------CTTGG--TGA-G-CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---CAGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTAC-G-CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTAT--A--GATCTTGTA-ATACATGTT--CTACATGGTA-T-AG--TAGTCTCAACTGTGCCTATTGGCAAATT---TTTGAA-TCACACGGATATA----AAC--TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGA-CTTGGCTCGA--ACTC-G-G-GTGA--ATCTA
gi|6 : TTATTAAT--T-AGCT--T---TCGATATTAATCCATGACAAA-TT---CCCCACGTTAGTATA-TTTA-TTACAAAC--TTTAGGG-TAC-TATC-TC-AATGGTCCATAC---TTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTG-------------CGAATCGACGCTT-------GAGTAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATTTTTTAGCAAGAAATTAGAGATGAAAACCGCACTAcataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|7 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatAAATG--------------AAGTCG----TT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGATTTT--CAACAAGAATT--GAG-TGAAAAC-GCACTAAAA-GATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATT-AACACAT---GAAAACAATTCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTC--------C--ATT-TTAAA-TTTTTT--AAAAATACAATCTGT--------ATAA-------AACGAGG----TGTCTTTATAT--TG-TTAAAAA--AAAG---------TG-TACAATC--A-C-ATATTCTGAAA-CAAAC--ACACACAAA---AAA-ATAC-AGTTACA-TGTTA-TAGTTATATGTAATATT---------------------------GGGGCGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AGTTGTCTT-GAGAGGAG-GCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---CAGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAAG---------TG-TACAATC--A-CAA-------AAA-CAAACACACACAA------AAA-ATAC-AGTTACA-TGTTA-TAGTTATATGTAATATTGGANNNNNNNNNNNNNN-N-NNNN-N-NNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATCAGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTAT----AT---TTA-C-GT---CAAACGT---------------CATC-------CTCAATTCACTTT-GAAAATGCCG-TGCATT--G----AAA-----CAAAT-T-GTGCAGGTT-TA-AAATTTC-TTAAA---A-GGAAAT-CCATG---CTTTTTTTTCACCAAAAATT-A--GTTGAATAAGAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 111 1 11 11 1 1 1 1 11 111 1 11 1 33333 11 111 111 1 8888888888888888888 22222 1 11 44444444 44444444 1 22222 1 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 55555555 1 111 1 1111 11 1 1 1 11111111 1 222222 22222 2222 111 222222 1 33333333333 11 222222222 33333333333 1111 111 1111 1 1 11 11 11 22 1 1 1 2 1 11 1 333333333333 11 1 11 4444444444444 1111 11 111 333 1 11 1 4444444444444444 11 111 111 11 11 111 1 1 22222222 2222 11 111 6666666666666666666 11111 11 1 99999999999999999999999999999999999999999 2222222 1111 3333 11 11 11111 5555555555555555 11111 3333 111 222222 111111 111 111 111 222222222222222222222222 22222 22222 1111 555555555555555 1 44444444444444 1111 3333333333 22 111 11111 1111 2222 22 1 1 11 111 1 1 333333333333 1 11 2222222222222222 1111 1 11111 222222222 11 1111111 222 222222 111 11111 1 2222222 11 1 11111 111
lowQualScore : 2222 777 6 3 7 0 44 88 3 3 2 3 11 999 0 22 2 0 00000 3 00 777 3 555 0 1111111111111111111 1 1 1 33333 0 88 88888888 88888888 3 1 22222 3 6 7 7 333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 33 111 666 33333333 0 111 8 0 1 8 8 8 1111 3 55 6 8 0 0 1 5 1 1 5 5 1 5 1 5 5 88888888 5 1 77 000000 5 88888 5 1 888 3333 666 5 111111 2 22222222222 555 0 5 33 666666666 11111111111 1 0000 1 5 5 5 000 5 0000 6 99 1 3 0 8 0 99 3 11 33 00 0 3 1 0 0 0 0 33 0 444444444444 3 33 3 33 3 8888888888888 4444 22 777 111 3 0 33 0 6666666666666666 33 777 8 000 22 33 777 3 0 2 55 0 3 44444444 1111 3 33 777 3 3 1 5555555555555555555 88888 33 0 00000000000000000000000000000000000000000 8 8 6666666 7777 0000 1 0 11 55 77777 0 3333333333333333 1 3 8 8 0 55555 6666 111 66 888888 666666 8 8 444 1 8 444 8 3 44 0 88 8 8 111 8 8 444444444444444444444444 00000 8 3 00000 7777 000000000000000 0 3 8 55555555555555 4 2222 0000000000 5 5 5 33 999 11111 3 0000 8 8 1111 3 3 55 3 3 88 7 777 3 0 2 0 3 8 0 888888888888 8 0 8 1 11 0 0 3333333333333333 6 6 4444 4 5 8 1 77 1 44444 5 222222222 33 5 8888888 666 1 666666 4 5 0 777 4 999 3 1 55 555 11111 1 2 0 888 4 2 5 1 2 1111111 3 4 5 11 5 0 77777 4 888
lowQualScore : .... ... . . . . .. .. . . . . .. ... . .. . . ..... . .. ... . ... . ................... . . . ..... . .. ........ ........ . . ..... . . . . ... ................................................................................................ .. .. ... ... ........ . ... . . . . . . .... . .. . . . . . . . . . . . . . . . ........ . . .. ...... . ..... . . ... .... ... . ...... . ........... ... . . .. ......... ........... . .... . . . . ... . .... . .. . . . . . .. . .. .. .. . . . . . . . .. . ............ . .. . .. . ............. .... .. ... ... . . .. . ................ .. ... . ... .. .. ... . . . .. . . ........ .... . .. ... . . . ................... ..... .. . ......................................... . . ....... .... .... . . .. .. ..... . ................ . . . . . ..... .... ... .. ...... ...... . . ... . . ... . . .. . .. . . ... . . ........................ ..... . . ..... .... ............... . . . .............. . .... .......... . . . .. ... ..... . .... . . .... . . .. . . .. . ... . . . . . . . ............ . . . . .. . . ................ . . .... . . . . .. . ..... . ......... .. . ....... ... . ...... . . . ... . ... . . .. ... ..... . . . ... . . . . . ....... . . . .. . . ..... . ...
lowQualScore : 7777 777 7 3 3 7 00 33 3 3 0 3 00 000 0 00 5 0 00000 2 22 555 2 555 0 8888888888888888888 0 0 2 00000 0 33 33333333 33333333 3 0 33333 3 7 3 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 88 000 222 55555555 0 000 0 0 0 0 0 0 5555 0 88 7 0 8 8 0 7 4 4 7 7 4 7 4 7 7 99999999 7 4 99 777777 7 66666 7 4 888 3333 777 0 777777 0 33333333333 999 7 7 11 111111111 66666666666 7 6666 7 7 7 7 000 7 0000 7 22 0 2 0 0 6 00 8 00 88 55 0 2 0 0 0 0 0 88 0 222222222222 2 88 3 88 2 5555555555555 0000 55 000 222 2 0 88 0 2222222222222222 88 000 0 000 00 88 555 2 5 5 88 0 2 00000000 2222 2 22 555 2 2 2 5555555555555555555 00000 88 0 33333333333333333333333333333333333333333 0 0 0000000 0000 4444 0 8 00 00 88888 8 0000000000000000 4 8 0 0 8 88888 0000 888 88 666666 000000 8 0 000 0 0 000 0 8 66 8 88 0 0 666 0 0 444444444444444444444444 00000 0 2 00000 0000 000000000000000 8 2 0 11111111111111 3 1111 9999999999 7 7 7 44 777 88888 7 0000 0 0 2222 2 2 33 3 3 33 3 000 0 0 5 0 2 0 8 888888888888 0 6 0 0 00 8 6 0000000000000000 7 7 2222 1 7 4 7 99 7 33333 7 999999999 66 7 1111111 111 4 444444 4 0 2 111 4 111 6 4 00 111 22222 2 9 4 999 9 9 7 4 9 6666666 6 4 0 99 0 0 00000 0 999
consensus : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--AACTC-GCCC---CACTTNN-AAGACAAC-TCGCCCC-----------T-A----TAGANTAATCAC-GC-TTACAAT--ATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTC-AG-----TGT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-A--GATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-TC----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGG-CTTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAAC--TTTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--G-AG-TGAAAACCGCACTA-AAAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATT-AACACAT--GAAAAAAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAN-CTCGCCC-CCAAGAC-AACTC-GTCCCCTC-TTAGA--C--AACTC-GCCC---CACTTTC-AAGACAAC-TCGCCCC-----------CAA----TANANTAATCAC-GC-TTACAAT--ATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTC-GG-----TGT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTNGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTA-TA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACACACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTT---A--GATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-TC----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGG-CTTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAAC--TTTAGGG-TAC-T--C-TC-A-----TC--ACACAT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--G-AG-TGAAAACCGCACTA-AAAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATT-AACACAT--GAAAAAAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GAC-A-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--A-CTC-TCCC---CACTTGA-AAGACAAC-TCACCCC-----------TCA----TAGACTAAT----GC-TTACAAT--TTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTT-TATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC--GTGTGT--AGC-T-GTGAAA---TC-A------TGT-AGGTGTGTT-ACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTA-GAACTTG---TGAGG-CCCGTATTAGCGTATATAATTGGGTC-ACA-TT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----A---CCAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAAT----ATAACTTA-CTAC---CAAACGTTAGGG-GCTGCCTC-CAT-T-T-CGTCTCAATTCACTT--GACAAT--CGATGTACT-AG----AAACAAATT-A------GCTGTT-TA-AATTATC-TC-AAA-A---GAAAT-CCATG--ATTTTTTTTTCCC-AAAAA--ATTTGTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATTCA----------ATTT-CAATAA-CG-CAGTAATA-CATA--CCAATTAAGCACCCCCC---CTCTCCCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCAGT-A-----------AATATA-ATCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAACTCC------AAG----TTTGGTGT--AAT-ATCAATAAA-A-TCCAC-ATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTAT-GT---ATCTTATAAC--T-TT--CACTTTA-A--GATCATGT--A-TACACTAT--CTACAT-GTACT-AG--TATTC----CTGT-----TTGGCA----T-----TTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTATTGAAGTATGA-TATCAATAAT-A-CT--T---T--AT-TTAAT---TGTTTGA-TT---CCC-AAGTTGTTATA--TTA-TT-CAAACTATTTAGGGATAC-T--T-TC-A-----TT--ACA-GT-GTAGA-----CTCA-GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATG-------------CAAGT-G----TT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGATTATTTCAACAAGAAAT--GAAG-TGAACACCGCACTATTAAGATTACTACATGTATGT----GAA-A-TTACGCTGAACC-GACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C--ATT-TT-AT-TATTTT--AAAAATAAAATGTGT--TATTAC-TA-ACAAGACAA-ACGAGG----TGTTTAC-TATACCGTTTTAAAA--AAAG-----TG-T---------AC-ATCTAA-CA-------AAACAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTATTA-G-TAT-ATGTAATATTGG--AGGCGGATTGTCC-T-GAAC-GTAGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A-TTGTCTTGGA-GATGGGGCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG--------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATA-AATA-AAGATGAGGAAGTCGTTTAT-TATACT--TTTAAAA--AAAG-----TGAT---------ACAATCG-A-CA------AAAACCAACA--CACACCACAAAAAA-ATACCAGTTACAATGT-A-TA-----T-ATGTAATATTGG--AGGCGAGTTGTCC-T-GA---------CAAG-TGT--------------GG-G-CGCAGTTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GAC-ATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACAC-TTCACCCTCCAAGACAAACTCTATCCCCTTATTAGA--CAGAACTCAACCCTCTCACGTTCAAAGACAACTTCGCCCC-----------T-A----CAAAGGTATCGCTACTTTAGATT--ACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTGTT--GTTCA-TAGTT-TAAT-TTTTGGAATCTTTTcat
gi|12 : aggaca-AA-ACGAGG----TGTTT-T-TATACTGTTT--AAA--TAAG-----TG-TTATTTTTGTACAATA--A-CA------GAAACAAAC--ACACGT-------AA-ATAC-ATATACA-t
gi|12 : A-ATAT-AATTA-----TTA-T--T-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-TAGAGA-A-GGGGCGAGTTGTCCTG----GAGA-GGG-GACG-AGTTGCCTT------AGGGGCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTA-GTACTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--C-AGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTA-----ATA--TTA-ATAG---CAAACGTTAGG----TACCCC---TCTCT-CGTCTCAA-TCACCTT-G-AAATGCGGAAATAATCAGCC--AAACAA----A------GCCGTTAGT-AAAT---------A-G---GAAAT-TCTTG--A--TTTGTTTAAA-AAAGA--ATTAGTGGAAGAAagcattcc
gi|14 : AT----AT---TTA-CT-G---CAAACATTAGGG---TACCCCTCATCT-T-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGC-AA----TAATCAGTC-AAAGAAAGACGTTATA-AAATTTC-TC-AAA-GTAGGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTGAA---GAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacA-AA-AGAAGG----TGTTTGT-TATACTG-TTTAAAT--AATGATTTTTG-T---------ACAATA--AGCA------GAAACAAAC---CACGT------AAT-AT
gi|15 : CAA-CTCGCCC-T--AGGC-AAATC-GTTCCCTC-CCAGA-----AACTC-GCCC---C-TTCTC-TAGACAAC-TCGCCCCAAAGTTACATACAATTATTATATTGATCAC-AC-GTACtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|15 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggg-TGT-ATGTAAC-TTTG--GGGCGAGTTGTCT-A-GAGA-A-GGGGCGAGTT-T------CTGGGA-GGGAA-CG-ATTTGCCT--------AGGGCGAGTTGTt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataatTA-TA-T-TGT-ATGTAACATT----GGGCG-GTTGTCTAC-GAGA-A-GGGGCGAG-TGTTC----CTGCGA-GGG-A-CG-ATTTGCCT--------AGGGCGAGTTG
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataT-GTGCAATATTGG--GGGCAAGTTGTCC-T-GAGA-G-GGTGCGAGTTGTCCTGAAGTG----GGG-G-TG-AGTTGTCCTAAA-GTGGAGGCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTA-TA--------TGTAATATTGG--GGGCGAGTTGTCC-T-GAG----------------------CTGAGA-GGG-GGTG-AGTTGTCTT-GA-GAAGGAGCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTATTAATAT---TCA-C-AA---CAAACGT-AGAGCGCT--CCT-CATCT-T-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-T-AGTTTTAAACAAATTAA------GCAGTTATA-AAATTTCTTC-AAA-G---GAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---C-AGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTATTAGTAT---TTAACTAAATCTAAACAT-AGGC-GC-GTTCT-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT---G----GAACA--------------C--------AGTTTT-TA-AAA-G-----AAT-CCATGGAATTTTTT---CAC-AAAAA--ATGGTTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGTAATATCATAAATCA-TTAAGCAGCCACCGCCC-----CCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTA-----------AATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CTTTTTA--ATGAAATA-CTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACAAAC-CA-A--A----TC--TAAGT----A-GTA--GT---ATTTT-TAAC--T-TTTTCAGTT---ATAGATTATTTTAA-TACATGTTATCTACAT-GTA-TTAGGTTG-TC-----TGT-----TTGGCAA--TTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGG-CTTGGCTCAATTGTT--A-GCGT----ATCTATT--AGTATGGTTATCAAT--T---CT--T---TAAAT-CTAAT---TGGTTGA-TT---TC----------ATA-TTTA-TT-CAAAC--GTTAGGG-TAC-T--CCTC-A-----TT--ACACAT-GTAGA-----CTCA-GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG--------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA--GAAATTTCA---TGATTTT-TCAACAAGAATT--G-AG-TGAAAACCGCACTA-AAAGATAACTACATGTATGT----GAATATTTAAGCTGAGC
gi|2 : AAAAATCTTATATA--TTTCTTTTAATCA-TTTACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTTC--------C--ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGT-AAATATTAAGTAAATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATT-CT----------G-----TT--TG-------ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AGTTGTCTTGAA-GAGGAGGCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGTA-TA-CATA--TCA-TTAAGCACCCACC---C-----CCACAC--TCCA
gi|23 : TTA-TAAG-TGTGATAATATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGACCTGAAGTG----GGG-G-CG-AGTTGTCTT
gi|24 : cataaatGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAG-----TGTGAGGT-TGTT-TCTCG
gi|25 : TGT-TT-CTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAAAG------ATGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : T-----TTG-A-TCA-------ATA----AAAT-------TACT--TCTAG-CAG-------TAGTAGT-GA----------------GTGTT-T-TGG-CTTGTCTCATTTGC-A-A-GCGT----ATCTATT--
gi|28 : tg-G-GGGGCGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTGGA-GA-AGGGTGAGTTGTCC-
gi|29 : -GAGGCGAGTTGTCCTGAATT---A-GGG-G-CG-AGTAGTCTT-----AGGGGGCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTC-AAGTACATGT-AGGT-T-TT-CCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAACTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTATT---ATA--TTC-CTA----CAAAGGTTAGGG-G-TACTCCTCATCT-TTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTAT-AG----AAACAAATT-AA-----GCTGTTTTATAAATTTC-TC-AAAAG---GAAATTCCTTG--ATTTTTTTTTTTC-ACAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGTA-TA-CATA--CCA-TTAAGCACCC------C-----TCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-CT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATACTTTTTTTT--CTGAAATA-CTCC------AAT----TTT--TGT--AAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTAT-GT---ATC-TATAGA--T-T----------------CTATG---A-TACACGTT--CTACAT-GTA-T-A---TA--------------------------------TTG-A-TCA-------ATA----AA--TTACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGTTGTATGG-CTTGGCTCAATTGCTCTACACGTA---ATCTATT--AGTATGATTATCAAT--T---CT--TTTATTAAT-TTAAT---TGTTTGATTT---CCC-ACGTTATT-TATTTTA-TT-CCAAC--TTTAGGG-TACTT--C-TCGA-----TCTTACACAT-GTAGA-----CTCA-GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGT-G----TTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG-TTTTTTC----AGAGAT--G-taag
gi|30 : AAAATG--------------AAGTCG----GT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGAcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT----GTATGCATATCAAT--TCA-CCGGT---TAAAT-TTAAT---TGTTTAA-TTTTCCCC-AAGTTTTTATA-TTTACTT-CGAAC--GTAAGGG-TAC-T--CATC-A-----TC--A-------TAGA-----CTCA-GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT--------------TAAGTCG----TT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA--CGCATTT-----------------------AAAAACGCATTA-AAAGATAACTACATGTCTTT----GAATATTTACGCTGAAC---ACATTTACG-TGATCACATT-AACACATAAGAAAAAAAAATCTTATAT------------------TTACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC--ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATA-A-A-TA-AA-ACGAGG----TGTCT-T-TATACTGTTTTAAAA--AA-G-----TG-T---------ACAATC--A-CA------GAAACAAGCA--CACAC------AAACATCT---TTATA-T---A-TA-G-TGT---GAAA----GG--GGGCGAGTTGTCA-T-GAAAAG-GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AGTTGTCTTG-A-GAAGGGGCGAGTTGTCT-TA-AG-A--GG-GGATGAGTTGTCTT-----GGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTA-CTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCAT-CTCGCCC-C-AAGAC-AACTC-ATCCC-TC-TTAGGACC--AACTC-GCCC---CACTTGA-AAGACAAC-TCACCC--------------A----TAGAATAA--AT-GC-TTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTCAGG-----TAC-ATGTGTGTTTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCT-------TGG--TGAG--CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---C-AGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTACG--CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTATA--GATCTTGT--AATACATGTT--CTACATGGTA-T-AG--TAGTCTCAACTGTGCCTATTGGCAAATTT-----TTGAA-TCACACGGATATA----AAC--TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGA-CTTGGCTCGA--ACTC-G-G-GTGA--ATCTA
gi|6 : TTATTAAT--T-AGCT--T---TCGATATTAATCCATGACAAA-TT---CCCCACGTTAGTATA-TTTA-TTACAAAC--TTTAGGG-TAC-TATC-TC-AATGGTCC--ATACTTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTG-------------CGAATCGACGCTT-------GAGTAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATTTTTTAGCAAGAAATTAG-AGATGAAAACCGCACTA-cataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|7 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatAAATG--------------AAGTCG----TT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGATTTT--CAACAAGAATT--G-AG-TGAAAAC-GCACTA-AAAGATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATT-AACACAT--G-AAAACAATTCTTATATA--TTTCTTTTAATCA-TTTACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTC--------C--ATT-TTAAA-TTTTTT--AAAAATACAATCTGT---------------ATA-AA-ACGAGG----TGTCT-T-TATATTG-TTAAAAA--AAAG-----TG-T---------ACAATC--A-CATATTCTGAAACAAAC--ACACACAAA---AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATT---------------------------GGGGCGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AGTTGTCTT-GA-GAGGAGGCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---C-AGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAAG-----TG-T---------ACAATC--A-CA------AAAACAAACACACACAA------AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATTGGANNNNNNNNNNNNNN-N-NNNN-N-NNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATC-AGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTAT----AT---TTA-C-GT---CAAACGT---------------CATC-------CTCAATTCACTTT-GAAAATGCCG-TGCATT--G----AAACAAATT-GT-----GCAGGTTTA-AAATTTC-TTAAAA-G---GAAAT-CCATG---CTTTTTTTTCAC-CAAAA--ATTAGTTGAATAAGAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 111 1 11 11 1 1 1 1 1 1 1 1 11 22222 11 222 1 1 111 44444 1 11 44444444 44444444 1 22222 1 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 44444444 1 111 1 1111 11 1 1 1 11111111 1 222222 22222 2222 111 222222 1 33333333333 11 222222222 33333333333 1111 111 1111 1 1 11 11 11 22 1 1 1 1 11 1 333333333333 11 1 11 4444444444444 1111 11 111 333 1 11 1 4444444444444444 11 111 111 11 11 111 1 1 22222222 2222 11 111 33333333333 11 11111 11 1 999999999999999999999999999999999999999999 2222222 1111 3333 11 11 11111 5555555555555555 11111 3333 111 222222 111111 111 111 111 222222222222222222222222 22222 22222 1111 555555555555555 1 44444444444444 1111 3333333333 22 111 11111 111 1 2222 22 1 1 11 1111 1 1 333333333333 11 2222222222222222 1111 1 11111 222222222 11 1111111 222 222222 111 11111 1 2222222 11 1 11111 111
lowQualScore : 2222 777 6 3 7 0 44 88 3 3 2 3 3 3 6 3 3 6 44 66666 7 77 333 3 22 3 0 999 1 33333 3 88 88888888 88888888 3 1 22222 3 6 7 7 333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 33 111 666 22222222 0 111 8 0 1 8 8 8 1111 3 55 6 8 0 0 1 5 1 1 5 5 1 5 1 5 5 88888888 5 1 77 000000 5 88888 5 1 888 3333 666 5 111111 2 22222222222 555 0 5 33 666666666 11111111111 1 0000 1 5 5 5 000 5 0000 6 99 3 0 8 0 99 3 11 33 00 0 3 1 0 0 66 0 33 0 444444444444 3 33 3 33 3 8888888888888 4444 22 777 111 3 0 33 0 6666666666666666 33 777 8 000 22 33 777 3 0 1 55 0 3 44444444 1111 3 33 777 3 3 77777777777 1 99 0 88888 33 0 000000000000000000000000000000000000000000 8 8 6666666 7777 0000 1 0 11 55 77777 0 3333333333333333 1 3 8 8 0 55555 6666 111 0 0 888888 666666 8 8 444 1 8 444 8 3 44 0 8 0 8 8 111 8 8 666666666666666666666666 00000 8 3 00000 7777 000000000000000 0 3 8 55555555555555 4 2222 0000000000 5 5 5 33 999 11111 3 99 111 0 1111 3 3 55 3 3 88 7 4444 3 0 2 0 3 8 0 888888888888 8 11 8 1 11 0 0 3333333333333333 6 6 4444 4 5 8 1 77 1 44444 5 222222222 33 5 8888888 666 1 666666 4 5 0 777 4 999 3 1 55 555 11111 1 2 0 888 4 2 5 1 2 1111111 3 4 5 11 5 0 77777 4 888
lowQualScore : .... ... . . . . .. .. . . . . . . . . . . .. ..... . .. ... . .. . . ... . ..... . .. ........ ........ . . ..... . . . . ... ................................................................................................ .. .. ... ... ........ . ... . . . . . . .... . .. . . . . . . . . . . . . . . . ........ . . .. ...... . ..... . . ... .... ... . ...... . ........... ... . . .. ......... ........... . .... . . . . ... . .... . .. . . . . .. . .. .. .. . . . . . .. . .. . ............ . .. . .. . ............. .... .. ... ... . . .. . ................ .. ... . ... .. .. ... . . . .. . . ........ .... . .. ... . . ........... . .. . ..... .. . .......................................... . . ....... .... .... . . .. .. ..... . ................ . . . . . ..... .... ... . . ...... ...... . . ... . . ... . . .. . . . . . ... . . ........................ ..... . . ..... .... ............... . . . .............. . .... .......... . . . .. ... ..... . .. ... . .... . . .. . . .. . .... . . . . . . . ............ . .. . . .. . . ................ . . .... . . . . .. . ..... . ......... .. . ....... ... . ...... . . . ... . ... . . .. ... ..... . . . ... . . . . . ....... . . . .. . . ..... . ...
lowQualScore : 7777 777 7 3 3 7 00 33 3 3 0 3 3 3 7 3 3 7 00 77777 3 00 333 3 00 3 7 000 0 33333 3 33 33333333 33333333 3 0 33333 3 7 3 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 88 000 222 55555555 0 000 0 0 0 0 0 0 5555 0 88 7 0 8 8 0 7 4 4 7 7 4 7 4 7 7 99999999 7 4 99 777777 7 66666 7 4 888 3333 777 0 777777 0 33333333333 999 7 7 11 111111111 66666666666 7 6666 7 7 7 7 000 7 0000 7 22 2 0 0 6 00 8 00 88 55 0 2 0 0 0 55 0 88 0 222222222222 2 88 3 88 2 5555555555555 0000 55 000 222 2 0 88 0 2222222222222222 88 000 0 000 00 88 555 2 5 0 88 0 2 00000000 2222 2 22 555 2 2 55555555555 0 88 2 00000 88 0 333333333333333333333333333333333333333333 0 0 0000000 0000 4444 0 8 00 00 88888 8 0000000000000000 4 8 0 0 8 88888 0000 888 8 8 666666 000000 8 0 000 0 0 000 0 8 66 8 0 8 0 0 666 0 0 888888888888888888888888 00000 0 2 00000 0000 000000000000000 8 2 0 11111111111111 3 1111 9999999999 7 7 7 44 777 88888 7 22 000 0 2222 2 2 33 3 3 33 3 0000 0 0 5 0 2 0 8 888888888888 0 66 0 0 00 8 6 0000000000000000 7 7 2222 1 7 4 7 99 7 33333 7 999999999 66 7 1111111 111 4 444444 4 0 2 111 4 111 6 4 00 111 22222 2 9 4 999 9 9 7 4 9 6666666 6 4 0 99 0 0 00000 0 999
consensus : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAAT-GC-GC-TTACAAT--ATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTC-AGG----TGT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--AACTC-GCCC---CAC-TTNNAAGACAAC-TCGCCCCT-ATAGANTAATCAC-GC-TTACAAT--ATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTC-AG-----TGT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GAC-A-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--A-CTC-TCCC---CAC-TTGAAAGACAAC-TCACCCCTCATAGACTAAT----GC-TTACAAT--TTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTT-TATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC--GTGTGT--AGC-T-GTGAAA---TC-A------TGT-AGGTGTGTT-ACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTA-GAACTTG---TGAGG-CCCGTATTAGCGTATATAATTGGGTC-ACA-TT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----A---CCAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAAT----ATAACTTA-CTAC---CAAACGTTAGGG-GCTGCCTC-CAT-T-T-CGTCTCAATTCACTT--GACAAT--CGATGTACT-AG----AAACAAATT-A------GCTGTT-TA-AATTATC-TC-AAA-A---GAAAT-CCATG--ATTTTTTTTTCCC-AAAAA--ATTTGTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATTCA----------ATTT-CAATAA-CG-CAGTAATA-CATA--CCAATTAAGCACCCCCC---CTCTCCCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCAGT-A-----------AATATA-ATCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAACTCC------AAG----TTTGGTGT--AAT-ATCAATAAA-A-TCCAC-ATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTAT-GT---ATCTTATAAC--T-TTC--ACTTTA-AGATCATGT--A-TACACTAT--CTACAT-GTACT-AG--TA-TTC----CTGT-----TTGGCA----T-----TTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTATTGAAGTATGAT-ATCAATAAT-A-CT--T---T--AT-TTAAT---TGTTTGA-TT---CCC-AAGTTGTTATA-TT-A-TT-CAAACTATTTAGGGATAC-T--T-TC-A-----TT--ACA-GT-GTAGA-----CTCA-GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATG-------------CAAGT-G----TT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGATTATTTCAACAAGAAAT--GAAG-TGAACACCGCACTATTAAGATTACTACATGTATGT----GAA-ATT-ACGCTGAACC-GACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C--ATT-TTA-T-TATTTT--AAAAATAAAATGTGT--TATTAC-TA-ACAAGACAA-ACGAGG----TGTTTAC-TATACCGTTTTAAAA--AAAG-----TG-T---------AC-ATCTAA-CA-------AAACAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTATTA-G-TAT-ATGTAATATTGG--AGGCGGATTGTCC-T-GAAC-GTAGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A-TTGTCTTGGA-GATGGGGCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG--------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATA-AATA-AAGATGAGGAAGTCGTTTAT-TATACT--TTTAAAA--AAAG-----TGAT---------ACAATCG-A-CA------AAAACCAACA--CACACCACAAAAAA-ATACCAGTTACAATGT-A-TA-----T-ATGTAATATTGG--AGGCGAGTTGTCC-T-GA---------CAAG-TGT--------------GG-G-CGCAGTTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GAC-ATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACAC-TTCACCCTCCAAGACAAACTCTATCCCCTTATTAGA--CAGAACTCAACCCTCTCACGTTCAAAGACAACTTCGCCCCT-ACAAAGGTATCGCTACTTTAGATT--ACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTGTT--GTTCA-TAGTT-TAAT-TTTTGGAATCTTTTcat
gi|12 : aggaca-AA-ACGAGG----TGTTT-T-TATACTGTTT--AAA--TAAG-----TG-TTATTTTTGTACAATA--A-CA------GAAACAAAC--ACACGT-------AA-ATAC-ATATACA-t
gi|12 : A-ATAT-AATTA-----TTA-T--T-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-TAGAGA-A-GGGGCGAGTTGTCCTG----GAGA-GGG-GACG-AGTTGCCTT------AGGGGCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTA-GTACTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--C-AGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTA-----ATA--TTA-ATAG---CAAACGTTAGG----TACCCC---TCTCT-CGTCTCAA-TCACCTT-G-AAATGCGGAAATAATCAGCC--AAACAA----A------GCCGTTAGT-AAAT---------A-G---GAAAT-TCTTG--A--TTTGTTTAAA-AAAGA--ATTAGTGGAAGAAagcattcc
gi|14 : AT----AT---TTA-CT-G---CAAACATTAGGG---TACCCCTCATCT-T-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGC-AA----TAATCAGTC-AAAGAAAGACGTTATA-AAATTTC-TC-AAA-GTAGGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTGAA---GAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacA-AA-AGAAGG----TGTTTGT-TATACTG-TTTAAAT--AATGATTTTTG-T---------ACAATA--AGCA------GAAACAAAC---CACGT------AAT-AT
gi|15 : -TGT-ATGTAAC-TTTG--GGGCGAGTTGTCT-A-GAGA-A-GGGGCGAGTT-T------CTGGGA-GGGAA-CG-ATTTGCCT--------AGGGCGAGTTGTtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataatTA-TA-T-TGT-ATGTAACATT----GGGCG-GTTGTCTAC-GAGA-A-GGGGCGAG-TGTTC----CTGCGA-GGG-A-CG-ATTTGCCT--------AGGGCGAGTTG
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataT-GTGCAATATTGG--GGGCAAGTTGTCC-T-GAGA-G-GGTGCGAGTTGTCCTGAAGTG----GGG-G-TG-AGTTGTCCTAAA-GTGGAGGCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTA-TA--------TGTAATATTGG--GGGCGAGTTGTCC-T-GAG----------------------CTGAGA-GGG-GGTG-AGTTGTCTT-GA-GAAGGAGCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTATTAATAT---TCA-C-AA---CAAACGT-AGAGCGCT--CCT-CATCT-T-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-T-AGTTTTAAACAAATTAA------GCAGTTATA-AAATTTCTTC-AAA-G---GAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---C-AGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTATTAGTAT---TTAACTAAATCTAAACAT-AGGC-GC-GTTCT-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT---G----GAACA--------------C--------AGTTTT-TA-AAA-G-----AAT-CCATGGAATTTTTT---CAC-AAAAA--ATGGTTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGTAATATCATAAATCA-TTAAGCAGCCACCGCCC-----CCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTA-----------AATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CTTTTTA--ATGAAATA-CTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACAAAC-CA-A--A----TC--TAAGT----A-GTA--GT---ATTTT-TAAC--T-TTTTCAGTTAT-AGATTATTTTAA-TACATGTTATCTACAT-GTA-TTAGGTTG-T-C-----TGT-----TTGGCAA--TTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGGC-TTGGCTCAATTGTT--A-GCGT----ATCTATT--AGTATGGTTATCAAT--T---CT--T---TAAAT-CTAAT---TGGTTGA-TT---TC----------ATA-TTTA-TT-CAAACG--TTAGGG-TAC-T--CCTC-A-----TT--ACACAT-GTAGA-----CTCA-GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG--------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA--GAAATTTCA---TGATTTT-TCAACAAGAATT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTAAGCTGAGC
gi|2 : AAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTTC--------C--ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGT-AAATATTAAGTAAATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATT-CT----------G-----TT--TG-------ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AGTTGTCTTGAA-GAGGAGGCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGT-ATA-CATA--TCA-TTAAGCACCCACC---C-----CCACAC--TCCA
gi|23 : TTA-TAAG-TGTGATAATATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGACCTGAAGTG----GGG-G-CG-AGTTGTCTT
gi|24 : cataaatGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAG-----TGTGAGGT-TGTT-TCTCG
gi|25 : TGT-TT-CTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAAAG------ATGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : T-----TTG-A-TCA-------ATA----AAAT-------TACT--TCTAG-CAG-------TAGTAGT-GA----------------GTGTT-T-TGGC-TTGTCTCATTTGC-A-A-GCGT----ATCTATT--
gi|28 : tg-G-GGGGCGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTGGA-GA-AGGGTGAGTTGTCC-
gi|29 : -GAGGCGAGTTGTCCTGAATT---A-GGG-G-CG-AGTAGTCTT-----AGGGGGCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTC-AAGTACATGT-AGGT-T-TT-CCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAACTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTATT---ATA--TTC-CTA----CAAAGGTTAGGG-G-TACTCCTCATCT-TTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTAT-AG----AAACAAATT-AA-----GCTGTTTTATAAATTTC-TC-AAAAG---GAAATTCCTTG--ATTTTTTTTTTTC-ACAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGTA-TA-CATA--CCA-TTAAGCACCC------C-----TCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-CT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATACTTTTTTTT--CTGAAATA-CTCC------AAT----TTT--TGT--AAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTAT-GT---ATC-TATAG----------ATTCT-------ATG---A-TACACGTT--CTACAT-GTA-T-A---TA---------------------------------TTG-A-TCA-------ATA----AA--TTACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGTTGTATGGC-TTGGCTCAATTGCTCTACACGTA---ATCTATT--AGTATGATTATCAAT--T---CT--TTTATTAAT-TTAAT---TGTTTGATTT---CCC-ACGTTATT-TATTTTA-TT-CCAACT--TTAGGG-TACTT--C-TCGA-----TCTTACACAT-GTAGA-----CTCA-GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGT-G----TTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG-TTTTTTC----AGAGAT--Gtaag
gi|30 : AAAATG--------------AAGTCG----GT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGAcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT----GTATGCATATCAAT--TCA-CCGGT---TAAAT-TTAAT---TGTTTAA-TTTTCCCC-AAGTTTTTATA-TTTACTT-CGAACG--TAAGGG-TAC-T--CATC-A-----TC--A-------TAGA-----CTCA-GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT--------------TAAGTCG----TT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA--CGCATTT-----------------------AAAAACGCATTAA-AAGATAACTACATGTCTTT----GAATATTTACGCTGAAC---ACATTTACG-TGATCACATTAACA-CATAAGAAAAAAAAATCTTATAT-----------------TT-ACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC--ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATA-A-A-TA-AA-ACGAGG----TGTCT-T-TATACTGTTTTAAAA--AA-G-----TG-T---------ACAATC--A-CA------GAAACAAGCA--CACAC------AAACATCT---TTATA-T---A-TA-G-TGT---GAAA----GG--GGGCGAGTTGTCA-T-GAAAAG-GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AGTTGTCTTG-A-GAAGGGGCGAGTTGTCT-TA-AG-A--GG-GGATGAGTTGTCTT-----GGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTA-CTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCAT-CTCGCCC-C-AAGAC-AACTC-ATCCC-TC-TTAGGACC--AACTC-GCCC---CAC-TTGAAAGACAAC-TCACCC---ATAGAATAA--AT-GC-TTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTC-AGG----TAC-ATGTGTGTTTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCT-------TGG--TGAG--CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---C-AGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTACG--CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTATAGATCTTGT--AATACATGTT--CTACATGGTA-T-AG--TAGT-CTCAACTGTGCCTATTGGCAAATTT-----TTGAA-TCACACGGATATA----AAC--TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGAC-TTGGCTCGA--ACTC-G-G-GTGA--ATCTA
gi|6 : TTATTAAT--T-AGCT--T---TCGATATTAATCCATGACAAA-TT---CCCCACGTTAGTATA-TTTA-TTACAAACT--TTAGGG-TAC-TATC-TC-AATGGTCC--ATACTTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTG-------------CGAATCGACGCTT-------GAGTAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATTTTTTAGCAAGAAATTAGA-GATGAAAACCGCACTAcataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|7 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatAAATG--------------AAGTCG----TT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGATTTT--CAACAAGAATT--GA-G-TGAAAAC-GCACTAA-AAGATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATTAACA-CAT--G-AAAACAATTCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTC--------C--ATT-TTAAA-TTTTTT--AAAAATACAATCTGT---------------ATA-AA-ACGAGG----TGTCT-T-TATATTG-TTAAAAA--AAAG-----TG-T---------ACAATC--A-CATATTCTGAAACAAAC--ACACACAAA---AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATT---------------------------GGGGCGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AGTTGTCTT-GA-GAGGAGGCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---C-AGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAAG-----TG-T---------ACAATC--A-CA------AAAACAAACACACACAA------AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATTGGANNNNNNNNNNNNNN-N-NNNN-N-NNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATC-AGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTAT----AT---TTA-C-GT---CAAACGT---------------CATC-------CTCAATTCACTTT-GAAAATGCCG-TGCATT--G----AAACAAATT-GT-----GCAGGTTTA-AAATTTC-TTAAAA-G---GAAAT-CCATG---CTTTTTTTTCAC-CAAAA--ATTAGTTGAATAAGAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 111 1 11 11 1 1 1 1 1 1 1 1 1 22222 11 222 1 1 111 444444444 11 44444444 44444444 1 22222 1 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 1 2222 1 111 1 1111 11 1 1 1 11111111 1 222222 22222 2222 111 222222 1 33333333333 11 222222222 33333333333 1111 111 1111 1 1 11 11 11 22 1 1 1 1 11 1 333333333333 11 1 11 4444444444444 1111 11 111 333 1 11 1 4444444444444444 11 111 111 11 11 111 1 1 22222222 2222 11 111 33333333333 11 11111 11 1 999999999999999999999999999999999999999999 2222222 1111 3333 11 11 11111 5555555555555555 11111 3333 111 222222 111111 111 111 111 222222222222222222222222 22222 22222 1111 555555555555555 1 44444444444444 1111 3333333333 22 111 11111 111 1 2222 22 1 1 11 1111 1 1 333333333333 11 2222222222222222 1111 1 11111 222222222 11 1111111 222 222222 111 11111 1 2222222 11 1 11111 111
lowQualScore : 2222 777 6 3 7 0 44 88 3 3 2 3 3 3 6 3 3 6 3 66666 7 77 333 3 3 0 999 1 888888888 88 88888888 88888888 3 1 22222 3 6 7 7 333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 33 111 666 0 1111 0 111 8 0 1 8 8 8 1111 3 55 6 8 0 0 1 5 1 1 5 5 1 5 1 5 5 88888888 5 1 77 000000 5 88888 5 1 888 3333 666 5 111111 2 22222222222 555 0 5 33 666666666 11111111111 1 0000 1 5 5 5 000 5 0000 6 99 3 0 8 0 99 3 11 33 00 0 3 1 0 0 66 0 33 0 444444444444 3 33 3 33 3 8888888888888 4444 22 777 111 3 0 33 0 6666666666666666 33 777 8 000 22 33 777 3 0 1 55 0 3 44444444 1111 3 33 777 3 3 77777777777 1 99 0 88888 33 0 000000000000000000000000000000000000000000 8 8 6666666 7777 0000 1 0 11 55 77777 0 3333333333333333 1 3 8 8 0 55555 6666 111 0 0 888888 666666 8 8 444 1 8 444 8 3 44 0 8 0 8 8 111 8 8 666666666666666666666666 00000 8 3 00000 7777 000000000000000 0 3 8 55555555555555 4 2222 0000000000 5 5 5 33 999 11111 3 99 111 0 1111 3 3 55 3 3 88 7 4444 3 0 2 0 3 8 0 888888888888 8 11 8 1 11 0 0 3333333333333333 6 6 4444 4 5 8 1 77 1 44444 5 222222222 33 5 8888888 666 1 666666 4 5 0 777 4 999 3 1 55 555 11111 1 2 0 888 4 2 5 1 2 1111111 3 4 5 11 5 0 77777 4 888
lowQualScore : .... ... . . . . .. .. . . . . . . . . . . . ..... . .. ... . . . ... . ......... .. ........ ........ . . ..... . . . . ... ................................................................................................ .. .. ... ... . .... . ... . . . . . . .... . .. . . . . . . . . . . . . . . . ........ . . .. ...... . ..... . . ... .... ... . ...... . ........... ... . . .. ......... ........... . .... . . . . ... . .... . .. . . . . .. . .. .. .. . . . . . .. . .. . ............ . .. . .. . ............. .... .. ... ... . . .. . ................ .. ... . ... .. .. ... . . . .. . . ........ .... . .. ... . . ........... . .. . ..... .. . .......................................... . . ....... .... .... . . .. .. ..... . ................ . . . . . ..... .... ... . . ...... ...... . . ... . . ... . . .. . . . . . ... . . ........................ ..... . . ..... .... ............... . . . .............. . .... .......... . . . .. ... ..... . .. ... . .... . . .. . . .. . .... . . . . . . . ............ . .. . . .. . . ................ . . .... . . . . .. . ..... . ......... .. . ....... ... . ...... . . . ... . ... . . .. ... ..... . . . ... . . . . . ....... . . . .. . . ..... . ...
lowQualScore : 7777 777 7 3 3 7 00 33 3 3 0 3 3 3 7 3 3 7 3 77777 3 00 333 3 3 7 000 0 000000000 33 33333333 33333333 3 0 33333 3 7 3 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 88 000 222 5 2222 0 000 0 0 0 0 0 0 5555 0 88 7 0 8 8 0 7 4 4 7 7 4 7 4 7 7 99999999 7 4 99 777777 7 66666 7 4 888 3333 777 0 777777 0 33333333333 999 7 7 11 111111111 66666666666 7 6666 7 7 7 7 000 7 0000 7 22 2 0 0 6 00 8 00 88 55 0 2 0 0 0 55 0 88 0 222222222222 2 88 3 88 2 5555555555555 0000 55 000 222 2 0 88 0 2222222222222222 88 000 0 000 00 88 555 2 5 0 88 0 2 00000000 2222 2 22 555 2 2 55555555555 0 88 2 00000 88 0 333333333333333333333333333333333333333333 0 0 0000000 0000 4444 0 8 00 00 88888 8 0000000000000000 4 8 0 0 8 88888 0000 888 8 8 666666 000000 8 0 000 0 0 000 0 8 66 8 0 8 0 0 666 0 0 888888888888888888888888 00000 0 2 00000 0000 000000000000000 8 2 0 11111111111111 3 1111 9999999999 7 7 7 44 777 88888 7 22 000 0 2222 2 2 33 3 3 33 3 0000 0 0 5 0 2 0 8 888888888888 0 66 0 0 00 8 6 0000000000000000 7 7 2222 1 7 4 7 99 7 33333 7 999999999 66 7 1111111 111 4 444444 4 0 2 111 4 111 6 4 00 111 22222 2 9 4 999 9 9 7 4 9 6666666 6 4 0 99 0 0 00000 0 999
consensus : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAGGT----GT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GAC-A-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--A-CTC-TCCC---CAC-TTGAAAGACAAC-TCACCCCTCATAGACTAATGC------TTACAA--TTTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTT-TATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC--GTGTGT--AGC-T-GTGAAA---TCA--T----GT-AGGTGTGTT-ACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTA-GAACTTG---TGAGG-CCCGTATTAGCGTATATAATTGGGTC-ACA-TT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----A---CCAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAAT----ATAACTTA-CTAC---CAAACGTTAGGG-GCTGCCTC-CAT-T-T-CGTCTCAATTCACTT--GACAAT--CGATGTACT-AG----AAACAAATT-A------GCTGTT-TA-AATTATC-TC-AAA-A---GAAAT-CCATG--ATTTTTTTTTCCC-AAAAA--ATTTGTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATTCA----------ATTT-CAATAA-CG-CAGTAATA-CATA--CCAATTAAGCACCCCCC---CTCTCCCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCAGT-A-----------AATATA-ATCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAACTCC------AAG----TTTGGTGT--AAT-ATCAATAAA-A-TCCAC-ATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTAT-GT---ATCTTATAAC--T-TTC--ACTTTA-AGATCATGT--A-TACACTAT--CTACAT-GTACT-AG--TA-TTC----CTGT-----TTGGCA----T-----TTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTATTGAAGTATGAT-ATCAATAAT-A-CT--T---T--AT-TTAAT---TGTTTGA-TT---CCC-AAGTTGTTATA-TT-A-TT-CAAACTATTTAGGGATAC-T--T-TC-A-----TT--ACA-GT-GTAGA-----CTCA-GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATG-------------CAAGT-G----TT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGATTATTTCAACAAGAAAT--GAAG-TGAACACCGCACTATTAAGATTACTACATGTATGT----GAA-ATT-ACGCTGAACC-GACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C--ATT-TTA-T-TATTTT--AAAAATAAAATGTGT--TATTAC-TA-ACAAGACAA-ACGAGG----TGTTTAC-TATACCGTTTTAAAA--AAAG-----TG-T---------AC-ATCTAA-CA-------AAACAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTATTA-G-TAT-ATGTAATATTGG--AGGCGGATTGTCC-T-GAAC-GTAGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A-TTGTCTTGGA-GATGGGGCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG--------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATA-AATA-AAGATGAGGAAGTCGTTTAT-TATACT--TTTAAAA--AAAG-----TGAT---------ACAATCG-A-CA------AAAACCAACA--CACACCACAAAAAA-ATACCAGTTACAATGT-A-TA-----T-ATGTAATATTGG--AGGCGAGTTGTCC-T-GA---------CAAG-TGT--------------GG-G-CGCAGTTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GAC-ATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACAC-TTCACCCTCCAAGACAAACTCTATCCCCTTATTAGA--CAGAACTCAACCCTCTCACGTTCAAAGACAACTTCGCCCCT-ACAAAGGTAT-CGCTACTTTAGAT--TACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTGTT--GTTCA-TAGTT-TAAT-TTTTGGAATCTTTTcat
gi|12 : aggaca-AA-ACGAGG----TGTTT-T-TATACTGTTT--AAA--TAAG-----TG-TTATTTTTGTACAATA--A-CA------GAAACAAAC--ACACGT-------AA-ATAC-ATATACA-t
gi|12 : A-ATAT-AATTA-----TTA-T--T-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-TAGAGA-A-GGGGCGAGTTGTCCTG----GAGA-GGG-GACG-AGTTGCCTT------AGGGGCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTA-GTACTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--C-AGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTA-----ATA--TTA-ATAG---CAAACGTTAGG----TACCCC---TCTCT-CGTCTCAA-TCACCTT-G-AAATGCGGAAATAATCAGCC--AAACAA----A------GCCGTTAGT-AAAT---------A-G---GAAAT-TCTTG--A--TTTGTTTAAA-AAAGA--ATTAGTGGAAGAAagcattcc
gi|14 : AT----AT---TTA-CT-G---CAAACATTAGGG---TACCCCTCATCT-T-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGC-AA----TAATCAGTC-AAAGAAAGACGTTATA-AAATTTC-TC-AAA-GTAGGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTGAA---GAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacA-AA-AGAAGG----TGTTTGT-TATACTG-TTTAAAT--AATGATTTTTG-T---------ACAATA--AGCA------GAAACAAAC---CACGT------AAT-AT
gi|15 : -TGT-ATGTAAC-TTTG--GGGCGAGTTGTCT-A-GAGA-A-GGGGCGAGTT-T------CTGGGA-GGGAA-CG-ATTTGCCT--------AGGGCGAGTTGTtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataatTA-TA-T-TGT-ATGTAACATT----GGGCG-GTTGTCTAC-GAGA-A-GGGGCGAG-TGTTC----CTGCGA-GGG-A-CG-ATTTGCCT--------AGGGCGAGTTG
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataT-GTGCAATATTGG--GGGCAAGTTGTCC-T-GAGA-G-GGTGCGAGTTGTCCTGAAGTG----GGG-G-TG-AGTTGTCCTAAA-GTGGAGGCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTA-TA--------TGTAATATTGG--GGGCGAGTTGTCC-T-GAG----------------------CTGAGA-GGG-GGTG-AGTTGTCTT-GA-GAAGGAGCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTATTAATAT---TCA-C-AA---CAAACGT-AGAGCGCT--CCT-CATCT-T-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-T-AGTTTTAAACAAATTAA------GCAGTTATA-AAATTTCTTC-AAA-G---GAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---C-AGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTATTAGTAT---TTAACTAAATCTAAACAT-AGGC-GC-GTTCT-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT---G----GAACA--------------C--------AGTTTT-TA-AAA-G-----AAT-CCATGGAATTTTTT---CAC-AAAAA--ATGGTTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGTAATATCATAAATCA-TTAAGCAGCCACCGCCC-----CCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTA-----------AATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CTTTTTA--ATGAAATA-CTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACAAAC-CA-A--A----TC--TAAGT----A-GTA--GT---ATTTT-TAAC--T-TTTTCAGTTAT-AGATTATTTTAA-TACATGTTATCTACAT-GTA-TTAGGTTG-T-C-----TGT-----TTGGCAA--TTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGGC-TTGGCTCAATTGTT--A-GCGT----ATCTATT--AGTATGGTTATCAAT--T---CT--T---TAAAT-CTAAT---TGGTTGA-TT---TC----------ATA-TTTA-TT-CAAACG--TTAGGG-TAC-T--CCTC-A-----TT--ACACAT-GTAGA-----CTCA-GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG--------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA--GAAATTTCA---TGATTTT-TCAACAAGAATT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTAAGCTGAGC
gi|2 : AAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTTC--------C--ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGT-AAATATTAAGTAAATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATT-CT----------G-----TT--TG-------ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AGTTGTCTTGAA-GAGGAGGCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGT-ATA-CATA--TCA-TTAAGCACCCACC---C-----CCACAC--TCCA
gi|23 : TTA-TAAG-TGTGATAATATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGACCTGAAGTG----GGG-G-CG-AGTTGTCTT
gi|24 : cataaatGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAGT----GTGAGGT-TGTT-TCTCG
gi|25 : TGT-TT-CTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAAAG------ATGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : T-----TTG-A-TCA-------ATA----AAAT-------TACT--TCTAG-CAG-------TAGTAGT-GA----------------GTGTT-T-TGGC-TTGTCTCATTTGC-A-A-GCGT----ATCTATT--
gi|28 : tg-G-GGGGCGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTGGA-GA-AGGGTGAGTTGTCC-
gi|29 : -GAGGCGAGTTGTCCTGAATT---A-GGG-G-CG-AGTAGTCTT-----AGGGGGCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTCAAGTACATGT-AGGT-T-TT-CCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAACTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTATT---ATA--TTC-CTA----CAAAGGTTAGGG-G-TACTCCTCATCT-TTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTAT-AG----AAACAAATT-AA-----GCTGTTTTATAAATTTC-TC-AAAAG---GAAATTCCTTG--ATTTTTTTTTTTC-ACAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGTA-TA-CATA--CCA-TTAAGCACCC------C-----TCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-CT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATACTTTTTTTT--CTGAAATA-CTCC------AAT----TTT--TGT--AAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTAT-GT---ATC-TATAG----------ATTCT-------ATG---A-TACACGTT--CTACAT-GTA-T-A---TA---------------------------------TTG-A-TCA-------ATA----AA--TTACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGTTGTATGGC-TTGGCTCAATTGCTCTACACGTA---ATCTATT--AGTATGATTATCAAT--T---CT--TTTATTAAT-TTAAT---TGTTTGATTT---CCC-ACGTTATT-TATTTTA-TT-CCAACT--TTAGGG-TACTT--C-TCGA-----TCTTACACAT-GTAGA-----CTCA-GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGT-G----TTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG-TTTTTTC----AGAGAT--Gtaag
gi|30 : AAAATG--------------AAGTCG----GT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGAcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT----GTATGCATATCAAT--TCA-CCGGT---TAAAT-TTAAT---TGTTTAA-TTTTCCCC-AAGTTTTTATA-TTTACTT-CGAACG--TAAGGG-TAC-T--CATC-A-----TC--A-------TAGA-----CTCA-GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT--------------TAAGTCG----TT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA--CGCATTT-----------------------AAAAACGCATTAA-AAGATAACTACATGTCTTT----GAATATTTACGCTGAAC---ACATTTACG-TGATCACATTAACA-CATAAGAAAAAAAAATCTTATAT-----------------TT-ACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC--ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATA-A-A-TA-AA-ACGAGG----TGTCT-T-TATACTGTTTTAAAA--AA-G-----TG-T---------ACAATC--A-CA------GAAACAAGCA--CACAC------AAACATCT---TTATA-T---A-TA-G-TGT---GAAA----GG--GGGCGAGTTGTCA-T-GAAAAG-GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AGTTGTCTTG-A-GAAGGGGCGAGTTGTCT-TA-AG-A--GG-GGATGAGTTGTCTT-----GGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTA-CTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCAT-CTCGCCC-C-AAGAC-AACTC-AT-CCCTC-TTAGGACC--AACTC-GCCC---CAC-TTGAAAGACAAC-TCACCC---ATAGAATAA-ATGC----TTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTCAGGT----AC-ATGTGTGTTTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCT-------TGG--TGAG--CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---C-AGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTACG--CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTATAGATCTTGT--AATACATGTT--CTACATGGTA-T-AG--TAGT-CTCAACTGTGCCTATTGGCAAATTT-----TTGAA-TCACACGGATATA----AAC--TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGAC-TTGGCTCGA--ACTC-G-G-GTGA--ATCTA
gi|6 : TTATTAAT--T-AGCT--T---TCGATATTAATCCATGACAAA-TT---CCCCACGTTAGTATA-TTTA-TTACAAACT--TTAGGG-TAC-TATC-TC-AATGGTCC--ATACTTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTG-------------CGAATCGACGCTT-------GAGTAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATTTTTTAGCAAGAAATTAGA-GATGAAAACCGCACTAcataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|7 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatAAATG--------------AAGTCG----TT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGATTTT--CAACAAGAATT--GA-G-TGAAAAC-GCACTAA-AAGATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATTAACA-CAT--G-AAAACAATTCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTC--------C--ATT-TTAAA-TTTTTT--AAAAATACAATCTGT---------------ATA-AA-ACGAGG----TGTCT-T-TATATTG-TTAAAAA--AAAG-----TG-T---------ACAATC--A-CATATTCTGAAACAAAC--ACACACAAA---AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATT---------------------------GGGGCGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AGTTGTCTT-GA-GAGGAGGCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---C-AGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAAG-----TG-T---------ACAATC--A-CA------AAAACAAACACACACAA------AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATTGGANNNNNNNNNNNNNN-N-NNNN-N-NNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATC-AGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTAT----AT---TTA-C-GT---CAAACGT---------------CATC-------CTCAATTCACTTT-GAAAATGCCG-TGCATT--G----AAACAAATT-GT-----GCAGGTTTA-AAATTTC-TTAAAA-G---GAAAT-CCATG---CTTTTTTTTCAC-CAAAA--ATTAGTTGAATAAGAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 111 1 11 11 1 1 1 1 1 1 1 1 1 22222 11 222 1 1 111 444444444 11 44444444 44444444 1 22222 1 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 2222 1 111 1 1111 11 1 1 1 11111111 1 222222 22222 2222 111 222222 1 33333333333 11 222222222 33333333333 1111 111 1111 1 1 11 11 11 22 1 1 1 1 11 1 333333333333 11 1 11 4444444444444 1111 11 111 333 1 11 1 4444444444444444 11 111 111 11 11 111 1 1 22222222 2222 11 111 33333333333 11 11111 11 1 999999999999999999999999999999999999999999 2222222 1111 3333 11 11 11111 5555555555555555 11111 3333 111 222222 111111 111 111 111 222222222222222222222222 22222 22222 1111 555555555555555 1 44444444444444 1111 3333333333 22 111 11111 111 1 2222 22 1 1 11 1111 1 1 333333333333 11 2222222222222222 1111 1 11111 222222222 11 1111111 222 222222 111 11111 1 2222222 11 1 11111 111
lowQualScore : 2222 777 6 3 7 0 44 88 3 3 2 3 3 3 6 3 3 6 3 66666 7 77 333 3 3 0 999 1 888888888 88 88888888 88888888 3 1 22222 3 6 7 7 333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 33 111 666 7 1111 0 111 8 0 1 8 8 8 1111 3 55 6 8 0 0 1 5 1 1 5 5 1 5 1 5 5 88888888 5 1 77 000000 5 88888 5 1 888 3333 666 5 111111 2 22222222222 555 0 5 33 666666666 11111111111 1 0000 1 5 5 5 000 5 0000 6 99 3 0 8 0 99 3 11 33 00 0 3 1 0 0 66 0 33 0 444444444444 3 33 3 33 3 8888888888888 4444 22 777 111 3 0 33 0 6666666666666666 33 777 8 000 22 33 777 3 0 1 55 0 3 44444444 1111 3 33 777 3 3 77777777777 1 99 0 88888 33 0 000000000000000000000000000000000000000000 8 8 6666666 7777 0000 1 0 11 55 77777 0 3333333333333333 1 3 8 8 0 55555 6666 111 0 0 888888 666666 8 8 444 1 8 444 8 3 44 0 8 0 8 8 111 8 8 666666666666666666666666 00000 8 3 00000 7777 000000000000000 0 3 8 55555555555555 4 2222 0000000000 5 5 5 33 999 11111 3 99 111 0 1111 3 3 55 3 3 88 7 4444 3 0 2 0 3 8 0 888888888888 8 11 8 1 11 0 0 3333333333333333 6 6 4444 4 5 8 1 77 1 44444 5 222222222 33 5 8888888 666 1 666666 4 5 0 777 4 999 3 1 55 555 11111 1 2 0 888 4 2 5 1 2 1111111 3 4 5 11 5 0 77777 4 888
lowQualScore : .... ... . . . . .. .. . . . . . . . . . . . ..... . .. ... . . . ... . ......... .. ........ ........ . . ..... . . . . ... ................................................................................................ .. .. ... ... . .... . ... . . . . . . .... . .. . . . . . . . . . . . . . . . ........ . . .. ...... . ..... . . ... .... ... . ...... . ........... ... . . .. ......... ........... . .... . . . . ... . .... . .. . . . . .. . .. .. .. . . . . . .. . .. . ............ . .. . .. . ............. .... .. ... ... . . .. . ................ .. ... . ... .. .. ... . . . .. . . ........ .... . .. ... . . ........... . .. . ..... .. . .......................................... . . ....... .... .... . . .. .. ..... . ................ . . . . . ..... .... ... . . ...... ...... . . ... . . ... . . .. . . . . . ... . . ........................ ..... . . ..... .... ............... . . . .............. . .... .......... . . . .. ... ..... . .. ... . .... . . .. . . .. . .... . . . . . . . ............ . .. . . .. . . ................ . . .... . . . . .. . ..... . ......... .. . ....... ... . ...... . . . ... . ... . . .. ... ..... . . . ... . . . . . ....... . . . .. . . ..... . ...
lowQualScore : 7777 777 7 3 3 7 00 33 3 3 0 3 3 3 7 3 3 7 3 77777 3 00 333 3 3 7 000 0 000000000 33 33333333 33333333 3 0 33333 3 7 3 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 88 000 222 0 2222 0 000 0 0 0 0 0 0 5555 0 88 7 0 8 8 0 7 4 4 7 7 4 7 4 7 7 99999999 7 4 99 777777 7 66666 7 4 888 3333 777 0 777777 0 33333333333 999 7 7 11 111111111 66666666666 7 6666 7 7 7 7 000 7 0000 7 22 2 0 0 6 00 8 00 88 55 0 2 0 0 0 55 0 88 0 222222222222 2 88 3 88 2 5555555555555 0000 55 000 222 2 0 88 0 2222222222222222 88 000 0 000 00 88 555 2 5 0 88 0 2 00000000 2222 2 22 555 2 2 55555555555 0 88 2 00000 88 0 333333333333333333333333333333333333333333 0 0 0000000 0000 4444 0 8 00 00 88888 8 0000000000000000 4 8 0 0 8 88888 0000 888 8 8 666666 000000 8 0 000 0 0 000 0 8 66 8 0 8 0 0 666 0 0 888888888888888888888888 00000 0 2 00000 0000 000000000000000 8 2 0 11111111111111 3 1111 9999999999 7 7 7 44 777 88888 7 22 000 0 2222 2 2 33 3 3 33 3 0000 0 0 5 0 2 0 8 888888888888 0 66 0 0 00 8 6 0000000000000000 7 7 2222 1 7 4 7 99 7 33333 7 999999999 66 7 1111111 111 4 444444 4 0 2 111 4 111 6 4 00 111 22222 2 9 4 999 9 9 7 4 9 6666666 6 4 0 99 0 0 00000 0 999
consensus : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GAC-A-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CTAGA--C--A-CTC-TCCC---CAC-TTGAAAGACAAC-TCACCCCTCATAGACTAATGC------TTACAA--TTTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTT-TATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC--GTGTGT--AGC-T-GTGAAA---TCA--T----GT-AGGTGTGTT-ACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTA-GAACTTG---TGAGG-CCCGTATTAGCGTATATAATTGGGTC-ACA-TT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----A---CCAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAAT----ATAACTTA-CTAC---CAAACGTTAGGG-GCTGCCTC-CAT-T-T-CGTCTCAATTCACTT--GACAAT--CGATGTACT-AG----AAACAAATT-A------GCTGTT-TA-AATTATC-TC-AAA-A---GAAAT-CCATG--ATTTTTTTTTCCC-AAAAA--ATTTGTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATTCA----------ATTT-CAATAA-CG-CAGTAATA-CATA--CCAATTAAGCACCCCCC---CTCTCCCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCAGT-A-----------AATATA-ATCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAACTCC------AAG----TTTGGTGT--AAT-ATCAATAAA-A-TCCAC-ATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTAT-GT---ATCTTATAAC--T-TTC--ACTTTA-AGATCATGT--A-TACACTAT--CTACAT-GTACT-AG--TA-TTC----CTGT-----TTGGCA----T-----TTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTATTGAAGTATGAT-ATCAATAAT-A-CT--T---T--AT-TTAAT---TGTTTGA-TT---CCC-AAGTTGTTATA-TT-A-TT-CAAACTATTTAGGGATAC-T--T-TC-A-----TT--ACA-GT-GTAGA-----CTCA-GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATG-------------CAAGT-G----TT-------A--TA-CGATTTCTC-ATA-TA-AGGAATTTCA--ATGATTATTTCAACAAGAAAT--GAAG-TGAACACCGCACTATTAAGATTACTACATGTATGT----GAA-ATT-ACGCTGAACC-GACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C--ATT-TTA-T-TATTTT--AAAAATAAAATGTGT--TATTAC-TA-ACAAGACAA-ACGAGG----TGTTTAC-TATACCGTTTTAAAA--AAAG-----TG-T---------AC-ATCTAA-CA-------AAACAAACA-ACACAC------AAA-ATAC-AGTTACA-TGTTATTA-G-TAT-ATGTAATATTGG--AGGCGGATTGTCC-T-GAAC-GTAGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A-TTGTCTTGGA-GATGGGGCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG--------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATA-AATA-AAGATGAGGAAGTCGTTTAT-TATACT--TTTAAAA--AAAG-----TGAT---------ACAATCG-A-CA------AAAACCAACA--CACACCACAAAAAA-ATACCAGTTACAATGT-A-TA-----T-ATGTAATATTGG--AGGCGAGTTGTCC-T-GA---------CAAG-TGT--------------GG-G-CGCAGTTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GAC-ATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACAC-TTCACCCTCCAAGACAAACTCTATCCCCTTATTAGA--CAGAACTCAACCCTCTCACGTTCAAAGACAACTTCGCCCCT-ACAAAGGTAT-CGCTACTTTAGAT--TACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTGTT--GTTCA-TAGTT-TAAT-TTTTGGAATCTTTTcat
gi|12 : aggaca-AA-ACGAGG----TGTTT-T-TATACTGTTT--AAA--TAAG-----TG-TTATTTTTGTACAATA--A-CA------GAAACAAAC--ACACGT-------AA-ATAC-ATATACA-t
gi|12 : A-ATAT-AATTA-----TTA-T--T-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-TAGAGA-A-GGGGCGAGTTGTCCTG----GAGA-GGG-GACG-AGTTGCCTT------AGGGGCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTA-GTACTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--C-AGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTA-----ATA--TTA-ATAG---CAAACGTTAGG----TACCCC---TCTCT-CGTCTCAA-TCACCTT-G-AAATGCGGAAATAATCAGCC--AAACAA----A------GCCGTTAGT-AAAT---------A-G---GAAAT-TCTTG--A--TTTGTTTAAA-AAAGA--ATTAGTGGAAGAAagcattcc
gi|14 : AT----AT---TTA-CT-G---CAAACATTAGGG---TACCCCTCATCT-T-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGC-AA----TAATCAGTC-AAAGAAAGACGTTATA-AAATTTC-TC-AAA-GTAGGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTGAA---GAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacA-AA-AGAAGG----TGTTTGT-TATACTG-TTTAAAT--AATGATTTTTG-T---------ACAATA--AGCA------GAAACAAAC---CACGT------AAT-AT
gi|15 : -TGT-ATGTAAC-TTTG--GGGCGAGTTGTCT-A-GAGA-A-GGGGCGAGTT-T------CTGGGA-GGGAA-CG-ATTTGCCT--------AGGGCGAGTTGTtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataatTA-TA-T-TGT-ATGTAACATT----GGGCG-GTTGTCTAC-GAGA-A-GGGGCGAG-TGTTC----CTGCGA-GGG-A-CG-ATTTGCCT--------AGGGCGAGTTG
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataT-GTGCAATATTGG--GGGCAAGTTGTCC-T-GAGA-G-GGTGCGAGTTGTCCTGAAGTG----GGG-G-TG-AGTTGTCCTAAA-GTGGAGGCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTA-TA--------TGTAATATTGG--GGGCGAGTTGTCC-T-GAG----------------------CTGAGA-GGG-GGTG-AGTTGTCTT-GA-GAAGGAGCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTATTAATAT---TCA-C-AA---CAAACGT-AGAGCGCT--CCT-CATCT-T-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-T-AGTTTTAAACAAATTAA------GCAGTTATA-AAATTTCTTC-AAA-G---GAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---C-AGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTATTAGTAT---TTAACTAAATCTAAACAT-AGGC-GC-GTTCT-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT---G----GAACA--------------C--------AGTTTT-TA-AAA-G-----AAT-CCATGGAATTTTTT---CAC-AAAAA--ATGGTTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGTAATATCATAAATCA-TTAAGCAGCCACCGCCC-----CCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTA-----------AATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CTTTTTA--ATGAAATA-CTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACAAAC-CA-A--A----TC--TAAGT----A-GTA--GT---ATTTT-TAAC--T-TTTTCAGTTAT-AGATTATTTTAA-TACATGTTATCTACAT-GTA-TTAGGTTG-T-C-----TGT-----TTGGCAA--TTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGGC-TTGGCTCAATTGTT--A-GCGT----ATCTATT--AGTATGGTTATCAAT--T---CT--T---TAAAT-CTAAT---TGGTTGA-TT---TC----------ATA-TTTA-TT-CAAACG--TTAGGG-TAC-T--CCTC-A-----TT--ACACAT-GTAGA-----CTCA-GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG--------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA--GAAATTTCA---TGATTTT-TCAACAAGAATT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTAAGCTGAGC
gi|2 : AAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTTC--------C--ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGT-AAATATTAAGTAAATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATT-CT----------G-----TT--TG-------ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AGTTGTCTTGAA-GAGGAGGCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGT-ATA-CATA--TCA-TTAAGCACCCACC---C-----CCACAC--TCCA
gi|23 : TTA-TAAG-TGTGATAATATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGACCTGAAGTG----GGG-G-CG-AGTTGTCTT
gi|24 : cataaatGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAGT----GTGAGGT-TGTT-TCTCG
gi|25 : TGT-TT-CTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAAAG------ATGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : T-----TTG-A-TCA-------ATA----AAAT-------TACT--TCTAG-CAG-------TAGTAGT-GA----------------GTGTT-T-TGGC-TTGTCTCATTTGC-A-A-GCGT----ATCTATT--
gi|28 : tg-G-GGGGCGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTGGA-GA-AGGGTGAGTTGTCC-
gi|29 : -GAGGCGAGTTGTCCTGAATT---A-GGG-G-CG-AGTAGTCTT-----AGGGGGCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTCAAGTACATGT-AGGT-T-TT-CCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAACTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTATT---ATA--TTC-CTA----CAAAGGTTAGGG-G-TACTCCTCATCT-TTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTAT-AG----AAACAAATT-AA-----GCTGTTTTATAAATTTC-TC-AAAAG---GAAATTCCTTG--ATTTTTTTTTTTC-ACAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGTA-TA-CATA--CCA-TTAAGCACCC------C-----TCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-CT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATACTTTTTTTT--CTGAAATA-CTCC------AAT----TTT--TGT--AAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTAT-GT---ATC-TATAG----------ATTCT-------ATG---A-TACACGTT--CTACAT-GTA-T-A---TA---------------------------------TTG-A-TCA-------ATA----AA--TTACATGTACT--TCTAG-CAGT----ACTAGTAATAGG----------------GAGTTGTATGGC-TTGGCTCAATTGCTCTACACGTA---ATCTATT--AGTATGATTATCAAT--T---CT--TTTATTAAT-TTAAT---TGTTTGATTT---CCC-ACGTTATT-TATTTTA-TT-CCAACT--TTAGGG-TACTT--C-TCGA-----TCTTACACAT-GTAGA-----CTCA-GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGT-G----TTTTCTTCCACCTA-CGATTCTTC-ACACTATAGAAATTTTATCATG-TTTTTTC----AGAGAT--Gtaag
gi|30 : AAAATG--------------AAGTCG----GT-------A--TA-CGATTTCTC-ATA-T--AGAAATTTC---ATGAcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT----GTATGCATATCAAT--TCA-CCGGT---TAAAT-TTAAT---TGTTTAA-TTTTCCCC-AAGTTTTTATA-TTTACTT-CGAACG--TAAGGG-TAC-T--CATC-A-----TC--A-------TAGA-----CTCA-GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT--------------TAAGTCG----TT-------C--TA-CGATTTCCC-ATA-TA--GAAATTTCA--CGCATTT-----------------------AAAAACGCATTAA-AAGATAACTACATGTCTTT----GAATATTTACGCTGAAC---ACATTTACG-TGATCACATTAACA-CATAAGAAAAAAAAATCTTATAT-----------------TT-ACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC--ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATA-A-A-TA-AA-ACGAGG----TGTCT-T-TATACTGTTTTAAAA--AA-G-----TG-T---------ACAATC--A-CA------GAAACAAGCA--CACAC------AAACATCT---TTATA-T---A-TA-G-TGT---GAAA----GG--GGGCGAGTTGTCA-T-GAAAAG-GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AGTTGTCTTG-A-GAAGGGGCGAGTTGTCT-TA-AG-A--GG-GGATGAGTTGTCTT-----GGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTA-CTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCAT-CTCGCCC-C-AAGAC-AACTC-AT-CCCTC-TTAGGACC--AACTC-GCCC---CAC-TTGAAAGACAAC-TCACCC---ATAGAATAA-ATGC----TTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTCAGGT----AC-ATGTGTGTTTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCT-------TGG--TGAG--CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---C-AGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTACG--CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTATAGATCTTGT--AATACATGTT--CTACATGGTA-T-AG--TAGT-CTCAACTGTGCCTATTGGCAAATTT-----TTGAA-TCACACGGATATA----AAC--TACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGAC-TTGGCTCGA--ACTC-G-G-GTGA--ATCTA
gi|6 : TTATTAAT--T-AGCT--T---TCGATATTAATCCATGACAAA-TT---CCCCACGTTAGTATA-TTTA-TTACAAACT--TTAGGG-TAC-TATC-TC-AATGGTCC--ATACTTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTG-------------CGAATCGACGCTT-------GAGTAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATTTTTTAGCAAGAAATTAGA-GATGAAAACCGCACTAcataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatttattaattagctttcgatattaatccatgacaaattccccacgttagtatatttattacaaactttagggtactatctcaatggtccatacttagtagataccacacacattcaccataatttgaatacctcatataaactgcgaatcgacgcttgagtaacggattctccatccatagaaatttcactgaattttttagcaagaaattagagatgaaaaccgcacta
gi|7 : atctcaataggatctacgccaaactaatcggatctgaaaagaacaataattcatatgataatgtattgttccaccttagatcgttgttccaatttatagatcttgtaatacatgttctacatggtatagtagtctcaactgtgcctattggcaaatttttgaatcacacggatataaactacaagtactgatctagcaagtgtgagctagtagtaaggtggatgtgcttagtagggttatggacttggctcgaactcgggtgaatctacataacctgcgaatactactataggtatgttatgattattcatcttccatatgcttcgatAAATG--------------AAGTCG----TT-------A--TA-CGATTTTTC-ATA-TA--TCAATTTCA---TGATTTT--CAACAAGAATT--GA-G-TGAAAAC-GCACTAA-AAGATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATTAACA-CAT--G-AAAACAATTCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTC--------C--ATT-TTAAA-TTTTTT--AAAAATACAATCTGT---------------ATA-AA-ACGAGG----TGTCT-T-TATATTG-TTAAAAA--AAAG-----TG-T---------ACAATC--A-CATATTCTGAAACAAAC--ACACACAAA---AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATT---------------------------GGGGCGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AGTTGTCTT-GA-GAGGAGGCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---C-AGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAAG-----TG-T---------ACAATC--A-CA------AAAACAAACACACACAA------AAA-ATAC-AGTTACA-TGTTA-TA-GTTAT-ATGTAATATTGGANNNNNNNNNNNNNN-N-NNNN-N-NNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATC-AGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTAT----AT---TTA-C-GT---CAAACGT---------------CATC-------CTCAATTCACTTT-GAAAATGCCG-TGCATT--G----AAACAAATT-GT-----GCAGGTTTA-AAATTTC-TTAAAA-G---GAAAT-CCATG---CTTTTTTTTCAC-CAAAA--ATTAGTTGAATAAGAc
blockSeqs : TAA AT C . A C CT G . G . . T C A T C A CAG A AA TCT G T CT G TCGCTACT TG TACTCTAG TGACCTTA . A GTT . C A A AAT TC GA TG AAC A ACAT G GTG T A A A A . AAGA T GG G . A G G T C C A . C . G TTGTACAT . G AA CATTC T ATTTG T T TTC TAAT A A TAAATC T GGTACTCCT CT T AA ATCAGCC GTCAAAGAAA C TTAT T T A A TAG T GAAT C TT G C . T AT T AT TA AT C A T A G AA T AA . ACCGCCC A CT T TT A AAATATTAAGTA GAG CA T AG A T . . CTCCCGAAAAGCTTCT . TCC C TG CA TA CGG T A A CA C T GTATTC GATA T TT TCC T A TCGTTGTTCC G AT TTAA AT G TAGTAGTCTCAACTGTGCCTATTGGCAAATTT A . CACGGAT TTTA GT T GA CA TGTGA GTGGATGTGCTTAGTA G A A . TCTAC GTAC T TCA TTTA A A CCA G T TTC C C AT T C A G . T ATCTCAATGGTCCATACTTA TACCA C C CATAA TGGA GCCGCCGAGTAAAAA T T TAATTTTGATTTTC C ACGC TTCTTCCACC A C C TA TCA TTTAG T TA GA . ATGT T T TT T . AA A AT T . G . T A AAAGGTTTCC G AA C C TA GATATTTCATATAAA . G AAGT A A T T AA A ATTTT A TATTTTTGT G G TATTCTG ACA A CACAAA C C ATG . AG G G AN TA AAAG T C AAG A G A A C AGAGGAG T . A AT A G GAGAT G T
blockSeqs : AA TA . . . T . . . . . . . . . . . . ACC A G . . . . A ATGC . . . . T TA . . A . . C . GT C A . . TG . . T . . . AGT G A . . A . G . . . A . C . . AT . . . CT . ATTTG . T . TAGT A . TAG T GTACCCCT TT . T TAGTTTT ATTAA C AGT T . . . . . AT . . T . . T T T . . T . A T . . A . . . ACCC A . . . A TA AT C T . A . . . CCAATT . T . AT CA . . T G C C . T TC . T T . T A ACTTTTTC T T TAA . . TTAGGTTGTCTGTTTGGCAATTGCCAT . . . . AT T . C T . T G . . TCG GA T TAG GGT T . . T . . . A TT . . . T . . CTCGATCTTACACAT . . C . . . C . T C . GAG . . . TA A TCAA A . G . . T T . . . . . AT T . G . T . GCCC . AA . T . GTATTATATAAA . . . G . T T . A . . . . . A A G AAA . . TG . GT . G . AC GAA T T AGC G . A G . AAAGTG . . . G . G G . T
blockSeqs : C . T C G . . GT . . T . . . AGA T . . . T . . . . . A . . . . A . . . AC . . . T . T . . TG T GCGCTCCT T . T GCAA ATTAA A ATA T . . . . . AT . . T . . . . T . . C . A A . . A . . . C A . . A A CT C . . A . . . G . . . A G . . . . G A . . TT . . . . . . G A . A . . TATA . . . . TT A . C T . A A . . TA A T T T A . . T . . . C AG . . . G . . CCTCATTACACAT . . T . . . . . C C . A . . . A C TTC A . G . . T T . . . . . T . CC . AA . G . A . . . A . T T . T . . . . . G A G . . . TG . GT . T . T GAA T C AAG C . . G . GAAGAG . . . . . . T . T
blockSeqs : T . . . . . G . . . . . . . . . A . . . . A . . . C . . . T . . . . AA . CGCGTTCT T . T ATAG ATTGT C ATA T . . . . . A . . T . . . C . . A . . . . CT . . C . . G . . . AA . . T T C . . A . . . . . . . . T . . CATCATCA . . C . . . . . . C . A . . . . C CAA T . . . CC . A . T . . . . . . . A . A . . . . . G A A . . . G . T . G . A GAA T C ATT A . . A . NNNNNN . . . . . . A . T
blockSeqs : . . . . . . . . . . . . . . A . . . C . . . . . . . . TA . TACCCC T . T TTG A T TTA T . . . . . C . . . . . C . C . . . . . . . . . . . . . . T . A . . . . . G A A . . . T . T . G . T GAG T C AAT A . . . . GAGAA . . . . . . A . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . . . . GT . . . . . TG . A . . . . . . . . . . A . . . . . . . . . . . . . . . . A . A . . . . . G . G . T GAG T C CGC A . . . . GGAGA . . . . . . T . .
blockSeqs : . . . . . . . . . G . T NNN T T AGC A . . . . GAGAA . . . . . . . . .
blockSeqs : . . . . . . G . T G T C NNN A . . . . GAGAG . . . . .
blockSeqs : . . . N . N N C N . . . . AG . .
blockSeqs : . . . . . . . C . . . . . A .
blockSeqs : . . C . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : T** AG** *** NA**** GTACTCCT*** T* ATTAA****** ATA* A** NT** C* TCA** T** TG**** N** CTCGTTACACT************* T************* TA TCAG* G** GCC********* AA ** G****** A** TG* T** GAA** GAGAG** T**
originalCons : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTGTGTT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTA-GAACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CTAN---CAAACGTTAGGG-GCTACCCC-CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANT-AG----AAACAAATT-A------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANTTTACATGTACT--TCTAGCCAGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTATT--AGTATGATTATCAAT--T-A-CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACT--TTAGGG-TAC-T--C-TC-A-----TC--ACACGT-GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATG-------------CAAGTCG----TT-------A--TA-CGATTTCTC-ATA-TA-AGAAATTTCA--ATGATTTTTTCAACAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTN--------C--ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CA------GAAACAAACA-ACACGC------AAA-ATAC-AGTTACA-TGTTA-TA-G-TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGA-G-GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGGA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
finalCons : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TTAGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTT--TT-CCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTAG--ACTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTAT----AT---TTA-CNA----CAAACGTTAGGGTACTCCT---CATCT-T-CGTCTCAATTCACTTT-GAAAATGCCGT-GTANT-AG----AAACAAATTAA------GCCGTTATA-AAATTTC-TC-AAA-G---GAAAT-CCATG--ATTTTTTTTTCAC-AAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAAA--TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANT--ACATGTACT--TCTAGC-AGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTCA--GCGTG---ATCTATT--AGTATGATTATCAATTG----CT--T---TNAAT-TTAAT---TGTTTGA-TT---CCC-ANGTTATTATA-TTTA-TT-CAAACN--TTAGGG-TAC-TCTCGTTACACT-------------GTAGA-----CTCA-GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATGT-------------AAGTCG----TT-------A--TA-CGATTTCTC-ATA-TATAGAAATTTCA--ATGATTTTTCAG-CAAGAAAT--GAG--TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTGCC---------ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGAGG----TGTTTAT-TATACTGTTTTAAAA--AAAG-----TG-T---------ACAATC--A-CAG------AAACAAACA--CACGC------AAA-ATAC-AGTTACATG-TTA-TAT--TGT-ATGTAATATTGG--GGGCGAGTTGTCC-T-GAGAA--GGGGCGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AGTTGTCTTGAGAG--GGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTGT--TCCAGCATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA
Alignments
lowQualScore : 2222 111 1 11 11 1 1 1 1 1 1 1 1 1 1 22222 11 111 1 1 222 333333333 111 44444444 44444444 1 22222 1 222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 111 111 2222 1 22222 1 2222 11 1 1 1 11111111 1 222222 22222 2222 111 1111 1111111 11 22222222 11111 1111 111 1111 1 1 11 11 11 22 1 1 1 1 11 1 333333333333 11 1 11 4444444444444 1111 11 111 333 1 11 1 4444444444444444 11 111 111 11 11 111 1 1 22222222 2222 11 111 33333333333 11 11111 11 1 999999999999999999999999999999999999999999 2222222 1111 111 11 1 11111 5555555555555555 11111 3333 7777777777777777777777777777777 555555555555555555555 11 111 44444444444444444444444444444444 11 111 33333333333333333333333333 111 111 22222 1111 555555555555555 1 33333333333333333333333333333333333 11 111 111111111 1 2222 22 1 1 11 1111 1 1 44444444 11 2222222222222222 1111 111 22222222222222222222222 1111 1111111 333333 1 11111111 11 11111 111
lowQualScore : 2222 777 6 3 7 0 44 88 3 3 2 3 3 3 6 0 0 2 0 0 77777 3 00 777 3 0 2 0 333 0 1 555555555 0 777 88888888 88888888 3 1 22222 3 6 7 7 333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 33 111 666 7 1111 0 99999 0 1 8 8 8 4444 3 55 6 8 0 0 1 5 1 1 5 5 1 5 1 5 5 88888888 5 1 77 000000 5 88888 5 1 888 4 3333 222 5 1 2222 5 999 6666666 5 5 5 0 5 0 00 22222222 44444 1 5 1 0000 1 5 5 000 5 5 0000 6 99 0 8 0 99 3 11 33 00 0 3 1 0 0 66 0 33 0 444444444444 3 33 3 33 3 8888888888888 4444 22 777 111 3 0 33 0 6666666666666666 33 777 8 000 22 33 777 3 0 1 55 0 3 44444444 1111 3 33 777 3 3 77777777777 1 99 0 88888 33 0 000000000000000000000000000000000000000000 8 8 6666666 7777 1 111 1 0 11 6 77777 0 3333333333333333 1 3 8 8 0 55555 6666 1111111111111111111111111111111 0 888888888888888888888 11 444 8 55555555555555555555555555555555 8 11 0 8 8 222 8 99999999999999999999999999 444 444 3 00000 7777 000000000000000 0 3 8 55555555555555555555555555555555555 5 5 5 33 999 5 6 3 2 444444444 0 1111 3 3 55 3 3 88 7 4444 3 0 2 0 3 8 0 99999999 8 8 11 8 1 11 0 0 3333333333333333 5 5 5 2222 555 6 3 66 55 22222222222222222222222 2222 4444444 88 000000 4 5 0 2 99 999 55 1 666 555 1 0 44 3 2 0 888 4 2 5 1 2 2 99999999 3 4 5 66 5 5 0 11111 4 888
lowQualScore : .... ... . . . . .. .. . . . . . . . . . . . . ..... . .. ... . . . . ... . . ......... . ... ........ ........ . . ..... . . . . ... ................................................................................................ .. .. ... ... . .... . ..... . . . . . .... . .. . . . . . . . . . . . . . . . ........ . . .. ...... . ..... . . ... . .... ... . . .... . ... ....... . . . . . . .. ........ ..... . . . .... . . . ... . . .... . .. . . . .. . .. .. .. . . . . . .. . .. . ............ . .. . .. . ............. .... .. ... ... . . .. . ................ .. ... . ... .. .. ... . . . .. . . ........ .... . .. ... . . ........... . .. . ..... .. . .......................................... . . ....... .... . ... . . .. . ..... . ................ . . . . . ..... .... ............................... . ..................... .. ... . ................................ . .. . . . ... . .......................... ... ... . ..... .... ............... . . . ................................... . . . .. ... . . . . ......... . .... . . .. . . .. . .... . . . . . . . ........ . . .. . . .. . . ................ . . . .... ... . . .. .. ....................... .... ....... .. ...... . . . . .. ... .. . ... ... . . .. . . . ... . . . . . . ........ . . . .. . . . ..... . ...
lowQualScore : 7777 777 7 3 3 7 00 33 3 3 0 3 3 3 7 0 0 5 0 0 55555 2 22 555 2 0 5 0 222 2 0 555555555 2 000 33333333 33333333 3 0 33333 3 7 3 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 88 000 222 0 2222 0 00000 0 0 0 0 0 2222 0 88 7 0 8 8 0 7 4 4 7 7 4 7 4 7 7 99999999 7 4 99 777777 7 66666 7 4 888 4 3333 222 0 0 1111 7 333 0000000 7 0 7 7 7 7 77 77777777 33333 9 1 7 6666 7 7 7 000 7 7 0000 7 22 0 0 6 00 8 00 88 55 0 2 0 0 0 55 0 88 0 222222222222 2 88 3 88 2 5555555555555 0000 55 000 222 2 0 88 0 2222222222222222 88 000 0 000 00 88 555 2 5 0 88 0 2 00000000 2222 2 22 555 2 2 55555555555 0 88 2 00000 88 0 333333333333333333333333333333333333333333 0 0 0000000 0000 0 888 0 8 00 0 88888 8 0000000000000000 4 8 0 0 8 88888 0000 3333333333333333333333333333333 8 222222222222222222222 00 000 0 00000000000000000000000000000000 0 00 8 0 0 000 0 66666666666666666666666666 000 000 2 00000 0000 000000000000000 8 2 0 77777777777777777777777777777777777 7 7 7 33 777 7 7 2 2 888888888 0 2222 2 2 33 3 3 33 3 0000 0 0 5 0 2 0 8 22222222 0 0 66 0 0 00 8 6 0000000000000000 7 7 7 1111 444 2 4 99 44 00000000000000000000000 9999 6666666 22 000000 0 0 2 5 99 888 77 4 444 111 5 3 22 1 9 4 999 9 9 7 4 9 9 99999999 6 4 0 99 0 0 8 66666 0 999
consensus : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TT-AGG--C--AACTC-GCCC---CAC-TTNAAAGACAAC-TCGCCCCT-ATAGANTAATACGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGTG--TGTTCCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTAG--A-CTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTA-T----AT---TTA-CTA----C-AAACGTTAGGG-CGC-T-CCTC-ATCTT-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANTAG----AAA-----CAAATTAAGCCGTTATA-AAATTTC-TC-AA---A-GGAAAT-CCATG--ATTTTTTTTTCA-CAAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANT--ACATGTACT--TCTAGC-AGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTAT--------------------T--AG------TATGATTATCAAT--------T-ACT--T---TAAAT--TTAATTG---TTTGA-T-----T---CC----CAAGTT------GTTA-TA-T--TTA-TT-CAAACT--TTAGGG-TACT-TC-TC----G---T-TACACAT--GTAGA---CTCA---GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATGCAA----G----TC----G----TT-------A--T-ACGATTTCT-CATA-TATAGAAATTTCA--ATG-ATT-TTTCAACAAGAANT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTT--------CC-ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGA-GG----TGTTTAT-TATACTGTTTTAAAA--AAA-G-----T-----G-T---------ACAATC--A-CA------GAAACAAACA-CACGC-A----AAA-ATAC-AGTTACA-TGTTAT-A-TTGTATGTAATATTGG---GGGCGAGTTGTCC-T-GAGAAG--GGG-CGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AG-TTGTCTT-GA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
Reference ( family-153 ) : NNNNNACTCGCCCT--A-GAC-A-CTCGCCCTT-AAGACGACTCGCCCCAA--TCAG-ACAA-CTCGCCTGCAAG-GCAT-CTCGCCC-CCAAGAC-AACTC-ATCCCCTC-TT-AGA--C--AACTC-GCCC---CAC-TTGAAAGACAAC-TCGCCCCT-ATAGANTAATGCGC----TTACAA--TATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTNCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAA--CTCAAGT----GT-AGGT---T-TTCCGCGAAGTCA-TCCCCTCTTNGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCTAG--A-CTTGG--TGAGG-CTCGTATTAGC-TATATAATTGGGTCTACAGTT-G-AGTAGTGTAATT-AT-C-AAT-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTA-T----AT---TTA-CNA----C-AAACGTTAGGG-TAC-T-CCTC-ATCTT-CGTCTCAATTCACTTT-GAAAATGCCG-TGTANTAG----AAA-----CAAATTAAGCCGTTATA-AAATTTC-TC-AA---A-GGAAAT-CCATG--ATTTTTTTTTCA-CAAAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACANTAA-CG-CAGTAATA-CATA--CCA-TTAAGCACCCACC---C-----CCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATA-CTCC------AAG----TTT--TGT--AAT-ATCAATAAA-A-TCCACCATCCAAAC--AT---ATCCGAACANACACA-ATAA----TC--TATGT----ATGTAT-GT---ATCTTATAAC--T-TTC-CANTTTA-AGATCATGT--A-TACACGTT--CTACAT-GTA-T-AG--TA-T-C----CTGT-----TTGGCAA--TT-----TTG-A-TCA-------ATA----AANT--ACATGTACT--TCTAGC-AGT----ACTAGTAGTAGG----------------GGGTTAT-TGGC-TTGGCTCAATTGCTC-A-GCGTG---ATCTAT--------------------T--AG------TATGATTATCAAT--------T-GCT--T---TNAAT--TTAATTG---TTTGA-T-----T---CC----CANGTT------ATTA-TA-T--TTA-TT-CAAACN--TTAGGG-TAC--TC-TC----G---T-TACAC-T--GTAGA---CTCA---GTTCAC-----TTT----GAA---------------TACCTCA-ATAAAATGTAA----G----TC----G----TT-------A--T-ACGATTTCT-CATA-TATAGAAATTTCA--ATG-ATT-TTTCAGCAAGAAAT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTACGCTGAACC-GACATTTACG-TAATCACATTAACA-CAT--GAAAAAAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTTG-------CC-ATT-TTAAT-TNTTTT--AAAAATACAATCTGTG-TATTACATA-A-AATA-AA-ACGA-GG----TGTTTAT-TATACTGTTTTAAAA--AAA-G-----T-----G-T---------ACAATC--A-CA------GAAACAAACA-CACGC------AAA-ATAC-AGTTACA-TGTTAT-A-TTGTATGTAATATTGG---GGGCGAGTTGTCC-T-GAGAAG--GGG-CGAGTTGTCCTGAGCTGAGA-GGG-G-CG-AG-TTGTCTT-GA-GAGGGGGCGAGTTGTCC-TA-AG-A--GG-G-ACGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TTCCAGCATT
gi|1 : ACTCGCCCT--A-GAC-A-CTCGCCCTTGAAGACGACTCGCCCCAA--TTAG-ACAAACTCGCCTACAAGCGCATGCTCGCCC-CCAAGAC-AACTC-ATCCCCTC-CT-AGA--C--A-CTC-TCCC---CAC-TTGAAAGACAAC-TCACCCCTCATAGACTAATGC------TTACAA--TTTTTTT--------TTAATTTATAAT--------TCTTTAATATTCCTTT-TATAATTTAATAATTCT--TATTTTGG---CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGTTCCAACCATTCCAAAC--GTGTGT--AGC-T-GTGAAA---TCA--T----GT-AGGTG--TGTTACGTGAAGTCA-TCCCCTCTTGGATGTAAATTATTT-AATTAGA-GGACGTAAAAAGCTAG--AACTTG---TGAGG-CCCGTATTAGCGTATATAATTGGGTC-ACA-TT-G-AGTAGT-TAATTGAT-C-AATGTA-TCTGAT-A----A---CCAGTGTT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGTTG---TAA-T----ATAACTTA-CTA----CCAAACGTTAGGG--GC-TGCCTCCAT-TT-CGTCTCAATTCACTT--GACAAT--CGATGTACTAG----AAA-----CAAATTA-GCTGTT-TA-AATTATC-TC-AA---A-AGAAAT-CCATG--ATTTTTTTTTCC-CAAAAA--ATTTGTT-AATAAGAAAC-GCGCAAAACAGATAATTAC--A-GTA--TGTTA--ATATTCA----------ATTT-CAATAA-CG-CAGTAATA-CATA--CCAATTAAGCACCCCCC---CTCTCCCCAC-C--TCCACCTC-GAAGACTT--ATTGAAGAC-TTTATTCAGT-A-----------AATATA-ATCTTCTA--TCGTTTATGAAATACTGTAAAA--TATAC-TTTCTTTTCCTGAAATAACTCC------AAG----TTTGGTGT--AAT-ATCAATAAA-A-TCCAC-ATTCAAAC--AT---ATCCAAACACACACA-ATAA----TTGGTATGT----ATGTAT-GT---ATCTTATAAC--T-TTC--ACTTTA-AGATCATGT--A-TACACTAT--CTACAT-GTACT-AG--TA-TTC----CTGT-----TTGGCA----T-----TTG-ACTCA-------ATA----AACTTTACATG-ACT--TCTTGCCAGT----ACTAGTAGTAGG----------------GAGTTAT-TGGCCTTGGCTCAATTGCTC-A-GCGT----ATCTAT--------------------TGAAG------TATGAT-ATCAATAA------T-ACT--T---T--AT--TTAATTG---TTTGA-T-----T---CC----CAAGTT------GTTA-TA-T--T-A-TT-CAAACTATTTAGGGATAC--TT-TC----A---T-TACAG-T--GTAGA---CTCA---GTT-AC-----TTT----GAA---------------T-CCTCA-ATAAAATGCAA----G----T-----G----TT-------A--T-ACGATTTCT-CATA-TA-AGGAATTTCA--ATG-ATTATTTCAACAAGAAAT--GAAG-TGAACACCGCACTATTAAGATTACTACATGTATGT----GAA-ATT-ACGCTGAACC-GACATTTACT-TAATAACATTAAAAACAT--GAAAAAAAAATCTTATATATCTTTCTGTTAATCATTTTACGTGGGAATAAGTAATTATATATTCCTAGTAAATTGAACTT--AAAATTA-TATAC-TGTT---------C-ATT-TTA-T-TATTTT--AAAAATAAAATGTGT--TATTAC-TA-ACAAGACAA-ACGA-GG----TGTTTAC-TATACCGTTTTAAAA--AAA-G-----T-----G-T---------ACA-TCTAA-CA-------AAACAAACAACACAC------AAA-ATAC-AGTTACA-TGTTATTA-GTATATGTAATATTGG---AGGCGGATTGTCC-T-GA-ACGTAGGG-CGAGTTGTCCTGAGCTGAGA-GGG-G-CG-A--TTGTCTTGGA-GATGGGGCGAGTTGTCC-TATAG-A--GG-G-ATGA-TTGTCTT----TGGGGC-AGTTGTCTTAGGGG--GAGTTGTTTTCCAGCATT
gi|10 : ggaatATTAATATA-ATGTTG-------CCCATTGTCAAT-TCTTCTTAAAAAATACAATATGTGATATTTCATATA-AATA-AAGATGA-GGAAGTCGTTTAT-TATACT--TTTAAAA--AAA-G-----T-----GAT---------ACAATCG-A-CA------AAAACCAACA-CACACCACAAAAAA-ATACCAGTTACAATGT-AT-A-T---ATGTAATATTGG---AGGCGAGTTGTCC-T-GACAAG-----------TGT--------------GG-G-CGCAG-TTGTCTTAGAGGAGGGAGCGAGTTGTCCTTA-AG-AATGG-G-ACGAGTTG----------------GTCGCTTTAGGGGCGGAGTT---TTCCAGC
gi|11 : ACTCGCCCCTAA-GAC-ATCTCGCCCTT-CAAACAAC-CGCCCCCACTTCAG-ACAA-CTCGCCCGTAAG-ACAC-TTCACCCTCCAAGACAAACTCTATCCCCTTATT-AGA--CAGAACTCAACCCTCTCACGTTCAAAGACAACTTCGCCCCT-ACAAAGGTAT-CGCTACTTTAGAT--TACCTTTTACTCTAGTTGGTTGATAATTGACCTTATCTGTAAT-TAACTTTGTT--GTTCA-TAGTT-TAAT-TTTTGGAATCTTTTcat
gi|12 : aggaca-AA-ACGA-GG----TGTTT-T-TATACTGTTT--AAA--TAA-G-----T-----G-TTATTTTTGTACAATA--A-CA------GAAACAAACA-CACGT-------AA-ATAC-ATATACA-t
gi|12 : A-ATAT-AATTA-----TTAT---TTGTATGTAATATTGG---GGGCGAGTTGTCC-TAGAGAAG--GGG-CGAGTTGTCCTG----GAGA-GGG-GACG-AG-TTGCCTT------AGGGGCGAGTTGTCC-actatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgataatataattattatttgtatgtaatattgggggcgagttgtcctagagaaggggcgagttgtcctggagaggggacgagttgccttaggggcgagttgtccagcattcc
gi|13 : aaacgaggtgtttttatactgtttaaataagtgttatttttgtacaataacagaaacaaacacacgtaaatacatatacaactatacatctatttcccaaaaaaaaagtgggggggggggtaacgtgtgatAAAGCTAGT-A-CTTGGGGTGGGGGTTCTTATTGGC-T-------TGGTTTTA--GTT-GGAGTAGTGTAATT-AT-C-AAT-T----T-AT-A----AT--C-AGT-AT--AA--------TT-GAATTTAA-----TT-A----------GCCAAGCTG---TTAAT----AT---TAA-TAG----C-AAACGTTA-GG-TAC-C-CCTC--TC-T-CGTCTCAA-TCACCTT-G-AAATG-CG--GAAATAATC--AGC-----CAAACAAAGCCGTTAGT-AAAT------------A-GGAAAT-TCTTG--A--TTTGTTTAA-AAAAGA--ATTAGTGGAAGAAagcattcc
gi|14 : A-T----AT---TTA-CTG----C-AAACATTAGGG-TAC-C-CCTC-ATCTT-TGTCTCAATTCACTTT-GAAAATGCCA-TGTAGCAA----TAATCAGTCAAAGAAAGACGTTATA-AAATTTC-TC-AAAGTA-GGAAAT-TCATG--ATTTTTTTATCACCAAGAATTATTAGTTG---AAGAAAC-GCATTAAA-AGATAATTACATATGTA--TGTa
gi|15 : attagtgacaataaatttattaaagataatgtttacacA-AA-AGAA-GG----TGTTTGT-TATACTG-TTTAAAT--AAT-GATTTTT-----G-T---------ACAATA--AGCA------GAAACAAAC--CACGT------AAT-AT
gi|15 : -A-TTGTATGTAAC-TTTG---GGGCGAGTTGTCT-A-GAGAAG--GGG-CGAGTT-T------CTGGGA-GGGAA-CG-AT-TTGCCT--------AGGGCGAGTTGTtctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataattgtatgtaactttggggcgagttgtctagagaaggggcgagtttctgggagggaacgatttgcctagggcgagttgt
gi|16 : aaaagaaggtgtttgttatactgtttaaataatgatttttgtacaataagcagaaacaaaccacgtaatattctagcactaatagcatctatcccaaaaaaaaagtggggggggggtacgtgtgatcaatataataA-AA-ACGAAGG----TGTTTTG-TATAC-GTT--AAAA--TAATG-----TTTTTTG-T---------ACAATA--AGCA------G-AACAAAC----CGC------GAA-
gi|16 : TAT-A-TTGTATGTAACATT-----GGGCG-GTTGTCTAC-GAGAAG--GGG-CGAG-TGTTC----CTGCGA-GGG-A-CG-AT-TTGCCT--------AGGGCGAGTTGtcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaatatatattgtatgtaacattgggcggttgtctacgagaaggggcgagtgttcctgcgagggacgatttgcctagggcgagttg
gi|17 : aaaacgaaggtgttttgtatacgttaaaataatgttttttgtacaataagcagaacaaaccgcgaatcattctagcaactatacatctagttcccaaaaaagagttgggggggggggtcgtgtgatcaataTGTGCAATATTGG---GGGCAAGTTGTCC-T-GAGAGG--GTG-CGAGTTGTCCTGAAGTG----GGG-G-TG-AG-TTGTCCTAAA-GTGGAGGCGAGTTGTCC-TA-AGAA--AG-G-ACAAGTTGTCCCGAGATGGGATGAGTTGTCTTATGGAA-GAGTTG--TCC
gi|18 : A-ATAC-AATTACA--GTTAT-A-T-----GTAATATTGG---GGGCGAGTTGTCC-T-GAG-----------------------CTGAGA-GGG-GGTG-AG-TTGTCTT-GA-GAAGGAGCGAGTTGTCC-TA-AG-A--GGAG-ACGAGTTGTCTT----GGGGGCGAGTTGTCTTAGGGGC-GAGTTG--TCCa
gi|19 : CAAGCTG---TTA-TTAATAT---TCA-CAA----C-AAACGT-AGAG-CGC-T-CCTC-ATCTT-CGTATCAATTCACTTT-GAAAATGCCG-TGTA-TAGTTTTAAA-----CAAATTAAGCAGTTATA-AAATTTCTTC-AA---A-GGAAAT-TCATat
gi|2 : gcg-G-AGTAATGTAATT-AT-C---C-TA-CTT-ATGA----A---C-AGTGTT--AT-CATTCTTTT-AATTTGGA-----TTTGTTGGATT-CCAC-AAGCTG---TTA-TTAGTAT---TTAACTAAATCT-AAACAT--AGG-CGCGT-TCTC-ATCTT-CGTCTCAATTCACTTT-GAAAATGCCG--GTAT--G----GAA-----CA--------C--------AGTTTT-TA-AA---A-G--AAT-CCATGGAATTTTTT---CA-CAAAAA--ATGGTTTGAATAAGAAACCGCGTAAAA-AGATAAT-ACT-ATGTAATTGTTATAGTATTCAATGCTTCCCAATTTACATTAA-CGGCAGTAATATCATAAATCA-TTAAGCAGCCACCGCCC-----CCACATCTTCCACCTCTGAAGATTTTTATTGAATACATTTATTCAGTTA-----------AATACAGAG-TTCTACATCGTT----AAATGAG-TGAAAATTAAAC-CTTTTTA--ATGAAATA-CTCTCCCGAAAAGCTTCTTT--TGTCCAATCATCAATTAATG-TTCACCATCTCAAT--AT---ATCT--ACAAAC-CA-A--A----TC--TAAGT----A-GTA--GT---ATTTT-TAAC--T-TTTTCAGTTAT-AGATTATTTTAA-TACATGTTATCTACAT-GTA-TTAGGTTG-T-C-----TGT-----TTGGCAA--TTGCCATTTG-A-TCA-------ATATTTAAAGT--ACATGTACT--TCTAGC-AGT----AGTA-TGATAAG----------------GG--TAT-TGGC-TTGGCTCAATTGTT--A-GCGT----ATCTAT--------------------T--AG------TATGGTTATCAAT--------T--CT--T---TAAAT--CTAATTG---GTTGA-T-----T---TC-------------------A-TA-T--TTA-TT-CAAACG--TTAGGG-TAC--TCCTC----A---T-TACACAT--GTAGA---CTCA---GTTCAC-----TTG----AAA---------------TAC-TCA-ATAAAATG-AA----G----TC----G----TT-------A--T-ACGATTTCT-CATA-TA--GAAATTTCA---TG-ATT-TTTCAACAAGAATT--GA-G-TGAAAACCGCACTAA-AAGATAACTACATGTATGT----GAATATTTAAGCTGAGC
gi|2 : AAAAATCTTATATAT--TTCTTTTAATCATTT-ACGTG-AGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATGA-TATACATGTT--------CC-ATT-TT-AT-TTTTTT--TAAACTACAATCAGTG-TATTAaaaaatcttatatatttcttttaatcatttacgtgagataagtaattataattcctagtcaattgaactttaaaaatgatatacatgttccattttattttttttaaactacaatcagtgtatta
gi|20 : gagtaatgtaattatcctacttatgaacagtgttatcattcttttaatttggatttgttggattccacaagctgttattagtatttaactaaatctaaacataggcgcgttctcatcttcgtctcaattcactttgaaaatgccggtatggaacacagtttttaaaagaatccatggaattttttcacaaaaaatggtttgaataagaaaccgcgtaaaaagataatactatgtaattgttatagtattcaatgcttcccaatttacattaacggcagtaatatcataaatcattaagcagccaccgcccccacatcttccacctctgaagatttttattgaatacatttattcagttaaatacagagttctacatcgttaaatgagtgaaaattaaacctttttaatgaaatactctcccgaaaagcttcttttgtccaatcatcaattaatgttcaccatctcaatatatctacaaaccaaatctaagtagtagtatttttaactttttcagttatagattattttaatacatgttatctacatgtattaggttgtctgtttggcaattgccatttgatcaatatttaaagtacatgtacttctagcagtagtatgataagggtattggcttggctcaattgttagcgtatctattagtatggttatcaattctttaaatctaattggttgatttcatatttattcaaacgttagggtactcctcattacacatgtagactcagttcacttgaaatactcaataaaatgaagtcgttatacgatttctcatatagaaatttcatgatttttcaacaagaattgagtgaaaaccgcactaaaagataactacatgtatgtgaatatttaagctgagcAGACTT--ATTGAAGACATTTATTCAGT-AAATATTAAGTAAATATA-AT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATAC-TTTTTTT--CTGAAATT-CT----------G-----TT--TG-------ATCAATAAA-A-T
gi|21 : TAAGCTGAGA-GGG-GGCG-AG-TTGTCTT-GAAGAGGAGGCGAGTTTTCC-TA-AA-A--GG-GGATGAGTTGTCTT----TGGGGCGAGTTGTCTTAGGGGC-
gi|22 : AAA-AGATAATTAC--ATGTA--TGTTA--ATATTCA-TGCTTCC-AATTTACATTAA-CG-CAGT-ATA-CATA--TCA-TTAAGCACCCACC---C-----CCACAC--TCCA
gi|23 : AAGAC-AACTC-GCCCCCAC-TTCAGGT-C--AACTC-GCCC---C-C-TCTCAGGACAAC-TCGCCCCCAATATATTATCACAC----TTATAA---ATTT
gi|23 : catATATTGG---GGGCGAGTTGTCC-T-GAGAGG--GGG-CGAGTTGACCTGAAGTG----GGG-G-CG-AG-TTGTCTT-
gi|24 : cataaatttataagtgtgataatGCATGGTCCTAACAGTTCCAAACTCGTGTTCGAAGC-TGGTAAAA--CTCTAGT----GTGAGGT---TGTTTCTCG
gi|25 : ---T-TTCTGTGAAGTCA-TCCCCTCGTAGATGTAAATTATTTAAATTAGA-GGA-GTAAAA----AG--A-TGTGGA-TGAGG-CTCGtgcgagtaat
gi|26 : tgT-----TTG-A-TCA-------ATA----AAAT-------TACT--TCTAGC-AG-------TAGTAGT-GA----------------GTGTT-T-TGGC-TTGTCTCATTTGC-A-A-GCGT----ATCTAT--------------------T--
gi|28 : tgG--GGG-CGAGTTGTCCTGATTTGAGA-GGGAG-CG-AGTTTTTCTG-GA-GA-AGGGTGAGTTGTCC-
gi|29 : gAG--AGG-CGAGTTGTCCTGAATT---A-GGG-G-CG-AG-TAGTCTT-----AGGGGGCGAGTTGTCC-TG-A
gi|3 : GTATGGTTCCAACCATTCCAAAC-CGTGTTT--AGC-T-GTGAAAAACTCAAGTACATGT-AGGT---T-TTCCGCGAAGTAA-TCCCCTCTTTGATGTAAATTATTT-AATTAGAAGGA-TTAAAAAGCTAAGAA-CTTGG--TGAGG-CTCGAATTAGC-TATATAATTGGGTCTACAGTT-GGAGTAGTGTAATTTAT-C-A-T-TA-TCT-AT-A----A---C-AGT-TT--AT-C----TTTT-AAATTTGA-----TT-GTTTGATTTCCGCCAAGCTG---TTA-TT---ATA--TTC-CTA----C-AAAGGTTAGGGGTAC-T-CCTC-ATCTTTCGT-TCAATTCACTTTTGAAAATGCCG-TGTTATAG----AAA-----CAAATTAAGCTGTTTTATAAATTTC-TC-AA---AAGGAAATTCCTTG--ATTTTTTTTTTT-CACAAA--ATTAGTTGAATAAGAAAC-GCGTAAAA-AGATAAT-AC--ACGTA--TGTTA--ATATTCA-CGCTTCC-AATTTACAATAAACG-CAGTA-TA-CATA--CCA-TTAAGCACCC------C-----TCACAC--TCCACCTC-GAAGACTT--ATTGAAGACATTTATTCAGT-A-----------AATATA-CT-TTCTAC-TCGTTT--GAAATA---TAAAAATTATACTTTTTTTT--CTGAAATA-CTCC------AAT----TTT--TGT--AAT-ATCAATAGA-ATTCCACCATTCAAAT--AC---A--CAAACACACACACATAAGTATTC--TATGT----ATGTAT-GT---ATC-TATAG----------ATTCT-------ATG---A-TACACGTT--CTACAT-GTA-T-A---TA---------------------------------TTG-A-TCA-------ATA----AATT--ACATGTACT--TCTAGC-AGT----ACTAGTAATAGG----------------GAGTTGTATGGC-TTGGCTCAATTGCTCTACACGTA---ATCTAT--------------------T--AG------TATGATTATCAAT--------T--CT--TTTATTAAT--TTAATTG---TTTGATT-----T---CC----CACGTT------ATT--TATT--TTA-TT-CCAACT--TTAGGG-TACT-TC-TC----GATCT-TACACAT--GTAGA---CTCA---GTTCAC-----TTTTGGAAAA---------------TACTTCA-ATGAATTGTAATTTTGATTTTCGAGTG----TTTTCTTCCACCT-ACGATTCTT-CACACTATAGAAATTTTATCATG-TTT-TTTCAGaag
gi|30 : AAAATG-AA----G----TC----G----GT-------A--T-ACGATTTCT-C--A-TATAGAAATTTC---ATG-Aagatgcagcg
gi|31 : GTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|31 : GTCTT----AGGGGCGAGTTGTCC----AGC------A--TTCCAGCATccagcat
gi|32 : TGTCTTAGGGGC-GAGTTG---TCCAGCATT
gi|4 : CGTGTACATGTAT------------------------G------TATGCATATCAAT--------TCACCGGT---TAAAT--TTAATTG---TTTAA-T-----TTTCCC----CAAGTT------TTTA-TA-T--TTACTT-CGAACG--TAAGGG-TAC--TCATC----A---T-CA--------TAGA---CTCA---GTTTAC-----TTT----GAAGCCGCCGAGTAAAAATAC-TCA-ATAAAAT-TAA----G----TC----G----TT-------C--T-ACGATTTCC-CATA-TA--GAAATTTCA--CGC-ATT-T----------------------AAAAACGCATTAA-AAGATAACTACATGTCTTT----GAATATTTACGCTGAAC---ACATTTACG-TGATCACATTAACA-CATAAGAAAAAAAAATCTTATAT-----------------TT-ACTTGGAGATAAGTAATTATA-AATTCTAGTCATTTGAACTATAAAAATTA-TATACATGTTAAAGGTTTCC-ATT-TAAATCTGTTTT--AA---TACAATCTCTG-TATTATATA-A-A-TA-AA-ACGA-GG----TGTCT-T-TATACTGTTTTAAAA--AA--G-----T-----G-T---------ACAATC--A-CA------GAAACAAGCA-CACAC------AAACATCT---TTA------TAT-A-TAGTGTGAAA----GG---GGGCGAGTTGTCA-T-GAAAAG--GGGGCCAGTTGTTCTGCGCTGAGA-GGG-GACG-AG-TTGTCTT-GA-GAAGGGGCGAGTTGTCT-TA-AG-AG-GG-G-ATGAGTTGTC-T----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCcct
gi|5 : taACTCGCCCT--AAGACTA-CTCGCC--T-AAG-CAA-TCGCCCCAA--TCAGGACAA-CTCGCCT-CAAG-GCAT-CTCGCCC-C-AAGAC-AACTC-AT-CCCTC-TT-AGGACC--AACTC-GCCC---CAC-TTGAAAGACAAC-TCACCC---ATAGAATAA-ATGC----TTACAATGTATTTTT--------TTAATTTATAAT--------TCTGTAAT-TTTCTTT-TA--GTTTA-TAATTCTAATATTTTGG---CTTT
gi|5 : tcaggacaCAACCATTCCAGAC-CGTGTTT--AGCGT-GTGACA--CTCAGGT----AC-ATGTGTGT-TTCCGTGAAGCCAATCCCCTCTTTGATGTAAATTATTT-AATTAGA-GGA-GTAAAAAGCT--------TGG--TGAG--CTCGTATTAGC-TATATAATTGGGTCTACAGTG-G-AGTAGTGTAATT-ATCC-AAT-TACTCT-AT-A----A---C-AGT-TC--AT-CT---TTTT-AAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTA-T----AT---TTattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatcaaccattccagaccgtgtttagcgtgtgacactcaggtacatgtgtgtttccgtgaagccaatcccctctttgatgtaaattatttaattagaggagtaaaaagcttggtgagctcgtattagctatataattgggtctacagtggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatattt
gi|6 : tcaggacaactcgccctaagactactcgcctaagcaatcgccccaatcaggacaactcgcctcaaggcatctcgccccaagacaactcatccctcttaggaccaactcgccccacttgaaagacaactcacccatagaataaatgcttacaatgtatttttttaatttataattctgtaattttcttttagtttataattctaatattttggctttattgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtgatAT-CTCAATAGG-A-TCTACG--CCAAACTAATCGGATCTGAAAAGA-ACA-ATAA----TT--CATATGATAATGTATTGTTCCACCTTAGATCGTTGTTC-CAATTTATAGATCTTGT--AATACATGTT--CTACATGGTA-T-AG--TAGT-CTCAACTGTGCCTATTGGCAAATTT-----TTGAA-TCACACGGATATA----AACT--ACAAGTACTGATCTAGCAAGTGTGAGCTAGTAGTAAGGTGGATGTGCTTAGTAGGGTTAT-GGAC-TTGGCTCGA--ACTC-G-G-GTGA--ATCTACATAACCTGCGAATACTACTAT--AGGTATGTTATGATTATTCATCTTCCATAT-GCT--T---CGATTTATTAATTAGCTTTCGA-TATTAAT---CCATGACAAATTCCCCACGTTAGTA-TATTTA-TTACAAACT--TTAGGG-TACTATC-TCAATGG---TCCATAC-TTAGTAGATACCACACACATTCACCATAATTT----GAA---------------TACCTCATATAAACTGCGA----A----TC----GACGCTTGA-----G--TAACGGATTCTCCATC-CATAGAAATTTCA--CTGAATT-TTTTAGCAAGAAATTAGA-GATGAAAACCGCACTA
gi|7 : AAATG-AA----G----TC----G----TT-------A--T-ACGATTTTT-CATA-TATC--AATTTCA---TG-ATT-TT-CAACAAGAATT--GA-G-TGAAAAC-GCACTAA-AAGATAACTACATGTATGTATGTGAATATTTACGCTGAACTTGACATTTACGTTAATCATATTAACA-CAT--G-AAAACAATTCTTATATAT--TTCTTTTAATCATTT-ACGTGGAGATAAGTAATTATA-ATTCCTAGTCAATTGAACTTTAAAAATTA-TATACATGTT--------CC-ATT-TTAAA-TTTTTT--AAAAATACAATCTGT---------------ATA-AA-ACGA-GG----TGTCT-T-TATATTG-TTAAAAA--AAA-G-----T-----G-T---------ACAATC--A-CATATTCTGAAACAAACA-CACACAAA---AAA-ATAC-AGTTACA-TGTTAT-AGTTATATGTAATATT--------------------------G--GGG-CGAGTTGTCCTGAGCTGAGAGGGG-G-CG-AG-TTGTCTT-GA-GAGGAGGCGAGTTGTCC-TA-AG-AG-GG-G-ATGAGTTGTCTT----AGGGGCGAGTTGTC
gi|8 : -G-AGTAGTGTAATT-AT-CCAAT-TACTCT-AT-A----A---C-AGT-TC--AT-C----TTTTTAAATTTGAATTTGTT-GTTTGATTTCCGCCAAGCTG---TTA-T----AT---TTA-Ccagca
gi|8 : gTATATATACTGTTTTAAAAAAAAA-G-----T-----G-T---------ACAATC--A-CA------AAAACAAACA-CACACAA----AAA-ATAC-AGTTACA-TGTTAT-AGTTATATGTAATATTGGANNNNNNNNNNNNNNN-N-NNNNNN--NNN-NNNNNNNNNNNNNNNNNNNN-NNN-N-NN-NN-NNNNNNN-NN-NNNNNNNNNNNNNNNNN-NN-NN-N--NN-N-NNNNNNNNNNTT----TGGGGCGAGTTGTCTTAGGGGC-GAGTTG---TCCAGCATTatatatatactgttttaaaaaaaaagtgtacaatcacaaaaacaaacacacacaaaaaatacagttacatgttatagttatatgtaatattggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttggggcgagttgtcttaggggcgagttgtccagcattc
gi|9 : ggagtagtgtaattatccaattactctataacagttcatctttttaaatttgaatttgttgtttgatttccgccaagctgttatatttacaTATTT-AATTAGA-GGA-GTAAAAAGCTAG--AACGTGG--TGAGG-CTAGTATTGAC-TATATAATTGGGTCTACTGTTGG-AGTGGTGTAATT-AT-C-AAT-TA-TCT-AC-ATTGTACATC-AGT-TTAAATAC----TTTT-AAATTTGA-----TT-GTTTGATTTCCACCACGCTGTTCTTA-T----AT---TTA-CGT----C-AAACG---------------TC-ATC------CTCAATTCACTTT-GAAAATGCCG-TGCATT-G----AAA-----CAAATTGTGCAGGTTTA-AAATTTC-TTAAA---A-GGAAAT-CCATG---CTTTTTTTTCA-CCAAAA--ATTAGTTGAATAAGAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): TGTGAAATATATCATTATAGAAGAAACAAGAAGTAACAAGCTAGTGATCGGCAGGCAGAGTA