lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222222222222222222222 22222222222222222222222222222222222222222222222 111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 2222 2 22 222 2 333 333 55555555555 2 222222 44 55 2 8888888888888 2 3333333 333 1 2 2 4 22 2 1 6666666666666666666666666 1 222 111 1111 1 11111 1 77777777777777777 1 1 1 1 00000000000000000000000000000000000000000000000 11111 1 1 22222 333333333333333 11111 1 11 777777777777777777777777777777777777 22222 111111 999999999999999999999999999999999999999999999999999999999 11111111 22 22 1 33333 111 11 111 000000000000000000000000000000000000000 1 111 1 11111 11111111 1111 1111 22222 1 11 44444444 11 2222 1111 222 1 9999999999999999
lowQualScore : 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2222 0 77 000 4 0 888 111 44444444444 2 0 666666 77 55 0 8888888888888 0 3 1111111 3 9 555 5 0 0 0 77 0 5 88 88 88 3333333333333333333333333 3 6 333 6 1 111 55 88 2222 6 99999 0 6 0 66666666666666666 3 22 0 2 0 0 88888888888888888888888888888888888888888888888 5 5 99999 5 888 5 66 0 3 5 5 0 00000 999999999999999 444 0 4 88888 66 4 0 2222 3 00 3 3 0 6666 8888 77777 222222222222222222222222222222222222 33 2 00000 777 888888 333333333333333333333333333333333333333333333333333333333 3 3 6666 3 44 11111111 6 3 22 3 2 99 6 7 00 7 2 5 777 11111 77 5 777 666 5 5 6 0 55 1 444 8 6 6 999999999999999999999999999999999999999 5 222 8 8 1 44444 6 6 66666666 5 7777 77 1111 4 77 66 5 5 0 0 88888 5 6 1 22 5 66 5 0 11111111 55 77 99 5 5 5 5 4444 0 2222 2 111 8 3 44 555 6 3 44 4 3 3 999 77777 555 8 7 3 6 0 3 2 33 2 2 5555555555555555 3 3
lowQualScore : . .................................................................................................................. . .... . .. ... . . ... ... ........... . . ...... .. .. . ............. . . ....... . . ... . . . . .. . . .. .. .. ......................... . . ... . . ... .. .. .... . ..... . . . ................. . .. . . . . ............................................... . . ..... . ... . .. . . . . . ..... ............... ... . . ..... .. . . .... . .. . . . .... .... ..... .................................... .. . ..... ... ...... ......................................................... . . .... . .. ........ . . .. . . .. . . .. . . . ... ..... .. . ... ... . . . . .. . ... . . . ....................................... . ... . . . ..... . . ........ . .... .. .... . .. .. . . . . ..... . . . .. . .. . . ........ .. .. .. . . . . .... . .... . ... . . .. ... . . .. . . . ... ..... ... . . . . . . . .. . . ................ . .
lowQualScore : 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0 55 000 0 0 555 000 55555555555 5 0 555555 55 00 0 0000000000000 5 5 5555555 5 0 000 5 0 0 0 55 0 5 00 00 00 5555555555555555555555555 3 7 333 0 7 777 00 33 1111 0 77777 7 7 0 88888888888888888 3 88 0 5 0 0 00000000000000000000000000000000000000000000000 7 7 33333 0 888 0 99 0 2 0 0 0 88888 333333333333333 777 1 8 99999 11 4 8 1111 1 77 1 1 2 1111 9999 00000 333333333333333333333333333333333333 99 0 77777 999 999999 555555555555555555555555555555555555555555555555555555555 7 1 5555 1 22 22222222 7 1 00 6 5 22 7 2 00 2 5 2 555 88888 99 7 333 666 7 7 7 8 44 4 000 0 0 0 222222222222222222222222222222222222222 0 666 0 0 8 88888 0 0 99999999 7 9999 99 9999 3 44 44 7 7 4 1 66666 7 0 4 33 0 99 2 1 88888888 77 99 44 7 7 7 7 1111 1 1111 1 666 6 3 66 888 0 3 66 8 3 3 999 77777 444 8 0 1 9 5 1 9 99 9 9 6666666666666666 1 3
consensus : NTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTCT-TTCATAACTTATATCCAATACACTTATCTA-ACTCTTAATTTTCTCATC-TCATAGAGGATGCATTATCATTACTGAAATTCGGGTGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCANGCGTAAATATATTTGTACACTGACAATAAACGTACCTCGTGGCCCAATTTGCAACTGNCCCTGGCGTNNGTGCAATTNATAATTTTAAGACAAAGGTAATATGTTT---------AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCGACCTAACCGCACC-TTTTAAAATCTTAGGTAACCGTGGAAACATAAGCTATCATTNNTTNNTTNNTTTTTTTTTTTG------------TTTTTGTNGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGTT---TTATCTA-AATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGACGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCC-TT-CTTCTCC-GTCGTCT----ACGT-GTAT-AT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AACAGAATATAATTAA-GT-TT-CC----GCGAATTT---TATGAA-CCG-TTCTAAATCAGTCACTGATTAC--T-GTAT--TTT-TACCTATACCACT-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAGC--CT-TC---T-CTT--------------TG-A--CAAA--CGCNGG---CCGC---TTTTCTTA-TGTTG------TAA-GGGACG-------CA-CT---------G---TTTTGT---T-GGT-CGAT-TTC----T-C--CG--------GTGAGGAA-CATCCATTCCCTTGGACGNAGAATCATACGTCCCGACG--AAATG-AATATTAA-TAAGAACGCGGAATTC-C-AAT-AGTTTTTCT--T-TATTTT-AAATTCC--AT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCT---CGC-ATTAATAGCA---------TGGA------GGGG----------------GGGGGG-CTGGAA-ATCTTT-CCGCTAAAA-GTTAAAATATTTTAACTA------T-ATTAATCCA-TATTT----GACGA--A-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TG-TACGGACGCATAA-----TC-ATATATGAGGATGT-ACG-CCATGCT-GC--AACTCAAAATTTCCCCAAANT-TTTTACTCTACA--TAA-TCATGA-A-TC-T-ACAGTCA---AGAGCGT----CTTCGTCNCAC--ACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--CACAAACGCT-ATCG-AACTTA---CAAT-A-TT-ATA-TGTGAAA-TCACTCAAG
Reference ( gi|1 ) : GTTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACTTTTATATTGATAAATTA---C--ATACAATGGTTTAAACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGT-AATA-ATTTGTACACTGACA-T-AACGTA-C--GTA--C-AATTTGCAACTGGCT-TGGCG-GTGT-CAATT--TAATTTTAAGACAA--GTA-TATGTTT---------AAA-TAAAAAAAACATAAATACATATGAAAAAAA--AAAA-TAAATTAAAAAAAAATAA---AAAGAAGCCGACCT-ACCG-ACCTTTTTAAAATCTTAGGTAACC--GGAAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGTT---TTGTCTA-AATTACG----TGAAACATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCC-TT-CTTCTCCTACCGTCTTATAATAT-GTAT-AT--ATGGATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AACAGAATATAATTAA-GT-TT-CC----GCGAATTT---TATGAAACCG-TTCTAAATCAGTCACTGATTAT--T-ATAT--TTT-TAGCTATACCACT-ATTCAACTGAAT-T-AAATA----ATTA----TG----TCAGC--CT-TC---T-CTTA-------------TG-A--CAAA--CGCAGG---CAGC---TTTTCTTA-TGTTG------TAA-GGGACG-------CA-CT---------G---TTTTGT---T-GGTACGGT-TTC----T-C--CG--------GTGAGGGA-CATCCATTCCCTTG--CAAAGAATCATACGTCCCGACG--AAATG-AATATTAAATAAGAACACGTAATTC-C-AAT-AGTTTTTCT--T-TATTTT-AAATTCT--AT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCT---CAC-ATTAATAACA---------TGGA------TTGA----------------GGGCGG-CCGGAA-ATCTTT-CCGCAAAAA-ATTGAAACATCTTAACTA------T-ATTAATCCA-TATTT----GATGA--A-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TG-TACGGACGCATAA-----TC-ATACATGAGGATGT-ACA-CCATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TAC-TCATGA-A-TC-T-ACAGTCA---AAAGCGT----CTTCGTCTCAA--ACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-A-TCA-A-GTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---TAATTAGTTGATA-TGTGAAA-TCACTCAAG
gi|3 : TTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTT---TTCATAACTTA---TCAATACA----TTTA--CTCTTAATTTTC--ATC-TCATAGAGGATGCAT-ATCATTACT-AAATTCG--TGGTGGTTTCTGC-GGTGGATTAAGGTGTGTGCATGCGTAAATA---TTGTACACTGACA-TAAACGTACC--GTAGCC-AATTTGCAACTGGCTCTGGCG-TGGT-CAATTA-TAATTTTAAGACAAAGGTA-TATGTTTNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN-NNNNNNNNNNNNNNNNNN---NNNGAAGCCGACCT-ACCG-ACC-TTTTAAAATCTTAGGTAACC--GGAAACATAA-CTA-TATTATTTATTTATTTTTTTTTTTTG-------------------TGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTC
gi|2 : G-----GTATTAGAAAA-----AGCTGTTCT--TCATAACTTATATC--ATACACTTATC---ACTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGT-AATATATTTGTACACTGACAAT-AACGTA-CTCGTG--CCAATTTGCAACTGCTC-TGGCGTGTGTGCAATTCATAATTTTAAGACAAAGGTAATATGTTT---------AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACC-TTTTAAAATCTTAGGTAACCGTGAAAACATAAGCTATCATTTATTTATTTATTTTTTT-----------------TTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAATagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|29 : caGTATTA-AGTTAGTAAC---AAAACTGAAATATTTCttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|3 : TCAGAGAAGTT---TTATCTA-AATTACT----TGAAAAATTTCATATT--CGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTT-CTTCTCC------------ACAT-GTAG-AT--CT--ATAC-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AACAGAATATAATTAA-GT-TT-CC----GCGAATT------------------TAAATCAGTCACTGA-TAC--T-GTAT--TTT-TACCTATACTA------CAACTGAAT-T-AAATA----ATTA----TG----TCAAC--CT-TT---T-CTTT-------------TG-A--CAAA--CGCAGG---CCGC----TTTCTTA-TGTTG------TAAGGGGACG-------CA-CT---------G---TTTTGT---T-TGT---GT-TTC----T-C--CG--------GTGAGGAA-CATCCATTCCCTTG--CAAAGAATCATACGCCCCGACG--AAATG-AATATTA---AGGAACGCGGAA-TC-C-AAT-AG----TCT--T-TA-TTT-AATTTCC--AT-TCGATAA-CACATCGTGT-TAAACTATTTCT---CGCGAATAATAGCA---------TGGAGGGGGGGGGG----------------GGGGGG-CTGGAA-ATCTTT-CCGCTAAAA-GTTAAAATATTTTAACTA------T-ATTTATCCA-TTTTT----GACG---A-TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGTAACG-CCATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TAA-TCATGA-A-TCTT-ACAGTC----AGAGCGT----CTTCGTCACAC--ACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGA-TCA-G---GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAAT---CTGGTATTGTGAAA-TCACTCAAagagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|29 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTT---TTATCTA-AATTACGTGACTGAAAAATTTCAT--
gi|30 : gtattaagttagtaacaaaactgaaatattTCAGAGAAG------TGTTTATGATTATG----TGAAATATCTTAT--TTCCATCCAATTTACACAA-CAgtt
gi|2 : aaccagatgaaatattAGAGAAGTT---T-ATCTA-AATTACT----TGAAA-ATTTCAT--TATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCC-TTTCTTCTCC-----------AATGTAGTCT-AT--A---AC---------------ATATGCAT--CGA-TATC----CCTGAA-CC---GT-TT-T--CGAAACAGAATATAATTAA-GT-TT-CC----GCGAATTT-----------------TAAATCAGTCAC-GATTATCCT-GTAT--TTT-TACCTATACTAC--A---AGCTGAAT-TAAAATA----ATTAT---TG----TCA----CT-TT---T-CTTT-------------TGAA--CAAA--CGCAGGC--CCGC---TTT--TTATTGTTG------TAA-GGGACG-------CA-CT---------G---TTTTGT---T-TGT---GT-TTT----T-C--CG--------GTGAGGAA-CATCCATCCCCTTG--CAAAGAATCATACGCCCCGACGCAAAATG-AATATTAAG-AAG--CGCG-GATTCGC-AATGAG----TCT--T-TATTT---AATTCC--ATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGCAC-A-TAATAGCAGGAGGGGGGGGGG------GGGG----------------GGGGGG-CTGGAA-ATCTTTGCCGCAAAAG-TTAAAAATATTTTAACTA------T-ATTAATCCA--ATTT----TGTGACGA-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAACGTCCATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TAA-TCATGACACTC-T-ACAGTC----AGAGCGT----C-TCGTCACAC--ACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTG-ACGC-A-TCGTA-GGGTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A---CAATTGGTC-AT----TGAAA-TCACTCAAGt
gi|7 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttacAGAGAGGCTAAATTATCTA---TTATG----TAAAAACTTTCAT--T--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCC-CT-CTTCTCTTATCGTCTTA--------------------------------------TATGCAC-TCGA-TAG--------GAA-CC---AT-TTCT--CG-AACAGAATA--ATGAA-GT-TTTCC----GCGAATTT---TATAAA------TCTA-----GTCACTGATTAT-----------------CT----CACT-GT---ACT----------CA----ATTA----TG----TCAGC--CT-TC---T-CTTT-------------TG-A--CAAA--CGCAGG---CCGC---TTTTCTTA-TGTTG------CAA-GAGACG-------CA-CT---------A---TTTTGT---T-GGTGCGAT-TTC----T-C--TG--------GTGA-GAA-CATTCATTCCTTAA--CAAAGA----------------------------TTAATTAAGCACACGGAATTC-C-AAT-A-TATTTCT--T-TATTTC-AAACTCC--AT-TCAATAA-
gi|31 : aaatattacAGTT---TCATCTA-AATTACG----AGAAAAATTTTAT--C--CACCCAATTTTCATAA-CAGCA-GGA-------
gi|33 : TATG----TGAAATATCTTAT--T--CATCCAATTTACACAA-CAttga
gi|6 : CCGATTAAAA-CCA-CCC-TT-CTTTTCTAGTCGTCT----ATGT-GTATTATCAACTAATCTCTCTTAATCCCTAATATACATATCGAGTAATGCTCCTTGAG-CCCGTGTCTTCTTTCG-AAC-GAACA--ATTTA-GT-TT-TCCAGAGCGAGTTCAGATA-GACGCTGATTCTA-------CAATGAATATGTT-A-AT--CTTATAATTACATGGCC-AT--AAC---AT-T-AA--------TTG----TT----TC-GCAACT-TCACTC-CTTGGT-----------TG-AAACAAAAGCGCAAGGA-CAGTAAACTACCTTA--GTTG------TAACGGGAGGGCCCTAACA-CTA--------G---CTTTGTGTGT-GG--CGTT-TTC----T-C--CG--------GTGAGGAA-CAT-CATTCCCtc
gi|4 : GATCT-------------ACATACAT-TCGA-TAGT----CCTGAAACC---GT-CTCT--CGCAACAGAATATAGCTAACGTCTT-CCAAA-GCAA--CT---TATGAAACCG-TTCTAAATCA-CCAC-GATAAC--TGATGT--TTT-T--TCATCTCACT-ACTCAAC-GAAT-T-AAA------ATTA----TG-----CAGC--CTGTC---T-CTT---------------G-A--CAAA--CGCAGGGGCCGCC---TTTTCTTA-TGTTGACTTGATAA-GGGACG-------CA-C----------G---TTATGT---T-GG-----------------------------GTGCG--------CATTCTCTCG--AGGAGACT-ATATGTCCCGACG--AAATGGAATATTAA-TAAGAACACAGAATTC-A-ACC-AGTTTTTCTATTATATTCT-AAATTCC--AT-T-GATAA-CA-ATCGTATGTA--CTGTTTCT---CAC-ATTAATGGAA---------TG-A------TTGAAGGGGGGGGGGGGGGGGGGAGG-GGGGAACATACTT-CCGCTAAAATAT--AAATATTTCAACCC------TTATTAATTCAATATTTT---GATGA--A-TG-CCTGCTTTGTCAT-CTTGG---AACT-CG-TG-TACGGACGCAT-A-----TC-ATATAATAAGATGT-ACACCCATGCT-GCCAAACTCAAAATTCCCC--AGAT-TTCT------CA--TA------AA-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCAC--ACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCA-AGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAGA-GCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTTAGTTTAATTAAT---TA-TGTGAAA-TCaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|5 : TCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CT-CACAGAATATAATTAA-GT-TT-CC----ACGAATTT------------------AAATCCGTCACTGATTAC--T-GTAT--GTT-TAGCTATACC-CC-AT----CTAAAT-T-AAAAA----ATAT----TG----TCAAC--CT-TC---T-CTTT-------------TG-A--CAAA--TGCAGG---CCGC---TTTTCTTA-TGTTG------TAA-GGGACA-------CA-CT---------G---TTTTGT---T-GGTGCGAT-TTC----T-C--TG--------GTGAGGAA-CATCCATTCCCTTtaaca
gi|21 : CT-------------ATATGCAT-TCGA-TAG--------GAA-CC---CT-TTCT--CG-AACAGAATATAATTAA-GT-TTTCC----TCGAATTT---TATGAAACCG-TTCTAAGACAGCCACTGATTAC--T-ATAT--TTT-TAtattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|11 : ggcGAA-CC---GT-GTCT--TG-AACACAATATGGTAAA-GT-TT-TC-----CGAAATT---TATGAAACCG-TTCTAAATCAATCACTGATTAC--T-GTAT--TTT-TATTTATCTCACT-ACTCAAGTGAAT-T-GAATA----ATTA----TG----CCAGC--CT-TC---T-CTTT-------------TG-A--CAAA--TGCAGG---TCAC---TTTTCTTA-TGTTG------CAA-ATGACG-------CA-Catcatc
gi|9 : agT---TATGAACGCG-TTCTACAAAAGCCACAGATTAT----ATCTCATCG-TACTCATGCAGCTGATTTAG-TAAACAC-AAATATCTAATTAGCATTGATATTCAGC--CT-TA---C-CCTAAAACATTCTTTATTG-A--CAAA--CACCGA---CCGCA--TTTTCTTA-GGTTG------CGA-GGTACG-------CA-CTGCATGCACTG---TTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCTAC--CAGAGAATGCGACGTTCCGGCG--AAATG-AAGAGTAAAC----GCAGGGAATTC-C-AAC-A-TACTTCT--T-TATTTT---ATTCTCCAT-TCGATAA-CA-AT
gi|26 : T-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAG------------------------------------CAAA--TGCTGG---CTGC---TTT------TGTTG-------------------------------------G---TCT-------------GAT-TTC----T-C--CA--------GTGAGGAA-CATCCATTCCCTTGGACGCACAATCATAtatacaatgtatttaaaact
gi|25 : T-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAG------------------------------------CAAA--TGCTGG---CTGC---TTT------TGTTG-------------------------------------G---TCT-------------GAT-TTC----T-C--CA--------GTGAGGAA-CATCCATTCCCTTGGACGCACAATCATA
gi|24 : T-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAG------------------------------------CAAA--TGCTGG---CTGC---TTT------TGTTG-------------------------------------G---TCT-------------GAT-TTC----T-C--CA--------GTGAGGAA-CATCCATTCCCTTGGACGCACAATCATA
gi|23 : T-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAG------------------------------------CAAA--TGCTGG---CTGC---TTT------TGTTG-------------------------------------G---TCT-------------GAT-TTC----T-C--CA--------GTGAGGAA-CATCCATTCCCTTGGACGCACAATCATA
gi|28 : T-ACTCAACTGAAT-T-AAATA----ATTA----TG----CCAG------------------------------------CAAA--TGCTGG---CTGC---TTT------TGTTG-------------------------------------G---TCT-------------GAT-TTC----T-C--CA--------GTGAGGAA-CATCCATTCCCTT
gi|18 : ACA----ATTA----TG----TCAGC---T-TC---TATTTC-------------TG-A--CATA--CGCAGGGC-TGGC---TTTT-TTA-TGTTG-------AA-AGGACG-------CAACT---------GATTTTTTGT---TTGGTGCGATCTTC----TAT--CG--------CTGAGGAAACATCCATTCC-TTG---AAAGAATGATACGTCCCGACT--AAATG-AA-ATTAATTA
gi|6 : AGGAACA--TCATTC-CCAAT-G--TTTTGT--T-TATTTTTAAATTC---AT-TTCATAA----ATCGTGTGTAA-CTTATTCT---CGC-ATTAATAGCA---------TGGG--------GG----------------GGGGGG-GCGG
gi|5 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgTTCCCT--T-TATTTT-AAATTCC--AT-TCGATAAACA-ATCGTGTGTAAACTGTTTCT---CGC-ATTAATAGTA---------TGGA------GGGG----------------GGGGGGGCTGGAA-ATCTTT-CCGCTAAAA-GTTAAAATATTTTCACTA------T-ATTAATCCA-TATTT----GATAA--A-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TG-TACGGACGCATAA-----TC-ATATATGAGGATGT-ACA-CCATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TAA-TCATGA-A-TC-T-ACAGTC----AGAGCAT----CTTCGTCTCAC--ACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-A-TCA-G-GTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A---CAATCAATTggggagggggggggggcgtgtgcggag
gi|8 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatcca-ATCTAT-CCGCTAAAA-GTTGAAATATTTTAACTACATGTAT-ATTAATCCA-TATTT----GACGA--A-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TG-TACGGACGCATAG-----TC-ATATATGAGGATGT-ACA-CCATGCT-GC--AACTCAAAATTTCC---------------CCAAA--TAA-TCATGA-A-TC-T-ACAGTCGCTTAGAGCGT----CTTCGTCTCAC--ACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-A-TCA-G-GTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A-------CAGTTAATA-TGTGAAA-TCACTTAtaagaaattt
gi|12 : TTTCAACTA------A-ATGAATCCA-TATTT----GACGA--A-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TG-TAAGGACACATAA-----TC-ATATGTGAGA-----------ATGCT-GC--AATTCAAAATTTCCCAA
gi|10 : gagagagagaaagagagagagagagcaattaaatccgcttacactaataat------T-ATTAATCCA-TTTTTTTTTGATGA--AATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TG-TATGGACGCATAA-----TCCATATATGGGGATGT-ACG-CCA-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-T-ACAGTCA---GA-GCGT----CTTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-A-TTA-G-GTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A---CAA----TTGGTA-TGTGAAATTCTCTCAta
gi|27 : acGCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AAC-TCATGA-A-AC-T-ACAGTCA---AAGGCGT----CTTCGCTTCAC--ACTTGTGATGT
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TC
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TCt
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TCt
gi|13 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACA-TATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TCt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-A-TCA-G-GTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------ATA-TGTGAAA-TCt
gi|20 : -GTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-A---------AATTAGTTAATA-T
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A---CAATTA----ATA-TGTAAAA-TCACTGAAGaatataaaccgaaaaata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Alignments
lowQualScore : 33333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111
lowQualScore : 2222 555555 11111 33333 1111 1111 55555 333 1 11 2 2 22 2222 11 2 77777777 1111 3333333 2 11 222 1 1 111 111 11 2 1 22 2 1 77777777777777777777777777 1 111 44444444444444444444444444444444444444444444 111 1111 11111 55555555555555555 1 1 0000000000000000000000000000000000000000000000 11111 11111 33333333333 11111 111 6666666666666666666666666666666666666666 111 77777777777777777777777777777777777777777777777777777777 11111111 111111 11 111 11 3333333333333333333333 111111 22222222 111111 1111 222222 111 2222 1111 6666666666666666
lowQualScore : 2 3333 777777 2 4 99999 33333 8888 7 9999 6 0 99999 444 3 6 44 3 3 11 6 6 1 9999 44 3 33333333 6666 2222222 7 7 44 333 0 3 555 3 555 7 44 3 3 22 3 2 22 22 22 77777777777777777777777777 0 3 777 99999999999999999999999999999999999999999999 5 000 0 0 2222 1 99999 6 8 77777777777777777 2 0 8 6 6666666666666666666666666666666666666666666666 5 5 55555 4 777 4 66 4 4 4 8 4 77777 1 0 44444444444 0 3 55 22222 4 4 8888 9999 000 2 333 5555 5555 2 5555 4444444444444444444444444444444444444444 33 33 33 66 5 5555 777 2 33333333333333333333333333333333333333333333333333333333 2 6666 2 33 00000000 2 444444 1 77 5 4 5 44 7 99 0 5 5 999 66 5 00 5 5 5 5 6 6 6 3333333333333333333333 6 999999 1 44444444 5 1 6 666 5 444444 5 5 888 5555 5 5 1 2 55 5 5 5 555555 5 5 5 66 5 4 66 111 0 2 66 5 5 5 5 5 0000 0000 1 66 3 44 555 3 44 3 88 77777 555 2 2 2 5 0 2 2 33 2 2 8888888888888888 33 2 3
lowQualScore : . .... ...... . . ..... ..... .... . .... . . ..... ... . . .. . . .. . . . .... .. . ........ .... ....... . . .. ... . . ... . ... . .. . . .. . . .. .. .. .......................... . . ... ............................................ . ... . . .... . ..... . . ................. . . . . .............................................. . . ..... . ... . .. . . . . . ..... . . ........... . . .. ..... . . .... .... ... . ... .... .... . .... ........................................ .. .. .. .. . .... ... . ........................................................ . .... . .. ........ . ...... . .. . . . .. . .. . . . ... .. . .. . . . . . . . ...................... . ...... . ........ . . . ... . ...... . . ... .... . . . . .. . . . ...... . . . .. . . .. ... . . .. . . . . . .... .... . .. . .. ... . .. . .. ..... ... . . . . . . . .. . . ................ .. . .
lowQualScore : 5 0000 555555 5 0 88888 33333 3333 3 7777 7 7 77777 777 3 7 77 3 3 77 7 7 0 3333 77 7 77777777 7777 7777777 0 3 77 333 7 3 333 0 000 3 77 3 3 00 3 0 00 00 00 00000000000000000000000000 0 0 555 00000000000000000000000000000000000000000000 7 000 1 1 1111 4 77777 7 0 00000000000000000 0 0 0 0 6666666666666666666666666666666666666666666666 0 0 88888 4 888 4 11 4 4 4 9 4 33333 9 7 00000000000 7 4 55 66666 0 0 5555 3333 000 9 999 7777 7777 7 7777 8888888888888888888888888888888888888888 77 77 77 33 3 7777 222 7 66666666666666666666666666666666666666666666666666666666 9 1111 9 99 44444444 9 555555 4 99 7 9 7 11 2 22 1 7 7 555 99 0 11 0 0 7 7 7 7 7 3333333333333333333333 7 222222 5 22222222 7 7 6 777 7 444444 0 0 888 6666 0 0 0 5 22 0 0 0 999999 0 0 0 11 0 4 11 444 1 5 99 0 0 0 0 0 0000 6666 0 99 1 22 444 1 22 1 55 11111 000 1 1 9 8 9 9 7 77 7 7 2222222222222222 99 9 1
consensus : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTT-T-TTCATAACTTATAT-CAATACGTTTA----ACTCTTAATTT--TCATC-TCGTAGAGGATGCATTAT-ATTACT-AAATTCG-GTGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACAATAA-CGTAC--CGTA--CCAATTTGCAACTGGCTCTGGCGT--GTG-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTTTTTTTTTTTTTTTT------------TTTTT-TTTTT-T-GCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCTTTCTTCTCCTATCGTCT----ACGTGTAT-AT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTAT-GTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA--CAAT----T--A--TA-TGTGAAA-TCACTCAAG
Reference ( family-1512 ) : NTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTCT-TTCATAACTTATATCCAATACACTTATCTAACTCTTAATTTTCTCATC-TCATAGAGGATGCATTATCATTACTGAAATTCGGGTGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCANGCGTAAATATATTTGTACACTGACAATAAACGTACCTCGTGGCCCAATTTGCAACTGNCCCTGGCGTNNGTG-CAATTNATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCGACCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGGAAACATAAGCTATCATTNNTTNNTTNNTTTTTT------------TTTTTGTTTTTGTNGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGACGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTT-CTTCTCC-GTCGTCT----ACGTGTAT-AT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCN-GG--CC--GC-T----TTTCTTAT-GTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCNCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--CACAAACGCT-ATCG-AACTTA--CAAT---ATT-A--TA-TGTGAAA-TCACTCAAG
gi|1 : TTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACTTTTATATTGATAAATTACATACAATG-GTTTA---AACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC---GTA---CAATTTGCAACTGGCT-TGGCG---GTGTCAATT--TAATTTTAAGACAA--GTA-TATGTTT---AAA-TAAAAAAAACATAAATACATATGAAAAAAAAAAA---TAAATTAAAAAAAAATAAA---AAGAAGCCGACCTA-CCG-ACCTTTTTAAAATCTTAGGTAACCG--GAAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGT-T---TTGTCTAAATTACG----TGAAACATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCTT-CTTCTCCTACCGTCTTATAATATGTAT-AT--ATGGATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATGAAA-C-CGTTCTAAATCAGTCACTGATT--A--T--TA-TAT-TTT----TA--GCTATACCACTATTCAACTGAAT-TAAA-T-A----ATTA----T-G----TCAGC--CT-T-C--TC-T-------------TAT--G------ACAAA--CGCA-GG--CA--GC-T----TTTCTTAT-GTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGTACGGT-TTC----T-C--CGG--------TGAGGGA-CATCCATTCCCTTG--C-AAAGAATCATACGTCCCGACG--AAATG-AATATTAAA-TAAGAACAC--GTAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCTAT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCTC-AC-AT-TAATAACATG--------GATT----------GA-GGGCGG------CCGGAA--------ATCTTT-CCGCAAAAAATT-G-A-AACATCTTAACTA------T-ATTAATCCA-TATT---T----GATGAA-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATACATGAGGATGT-A-CA-CC-ATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TA-CTCATGA-A-TC-TA-CAGTCA---AAAGCGTC----TTCGTCTCA--AACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-ATC--AAGTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA--TAATTA-GTTGA--TA-TGTGAAA-TCACTCAAG
gi|10 : g------T-ATTAATCCA-TTTT---TTTTTGATGAAATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TGT-ATGGACGCATAA-----TCCATATATGGGGATGT-A-CG-CC-A-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-TA-CAGTCA----GAGCGTC----TTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-ATT--AGGTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A--CAAT----TG-G--TA-TGTGAAATTCTCTCA
gi|11 : acGAA-CC---GT-GTCT--TG-AA-CACAATATGGTAAA-G-T-TTTC-----CGAAATTTATG-AAAC-CGTTCTAAATCAATCACTGATT--A--C--TG-TAT-TTT----TA--TTTATCTCACTACTCAAGTGAAT-TGAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--TC--AC-T----TTTCTTAT-GTTG------CAA-ATG-ACG-------CA-C
gi|12 : agT-CCGCTTACA-CT-A-ATAAT-TTTCAACTA------A-ATGAATCCA-TATT---T----GACGAA-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TGT-AAGGACACATAA-----TC-ATATGTGAGA-------------ATGCT-GC--AATTCAAAATTTCCC
gi|13 : gagagagagaaagagagagagagagcaattaaaTCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCaata
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCt
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCt
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACAT-ATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCt
gi|18 : A-C-A----ATTA----T-G----TCAGC---T-T-C--TA-T-------------T-TCTG------ACATA--CGCA-GG--GCTGGC-T----TTT-TTAT-GTTG-------AA-AGG-ACG-------CAACT-GATT------TTTTGT---TTGGTGCGATCTTC----TAT--CGC--------TGAGGAAACATCCATTCC-TTGAA----AGAATGATACGTCCCGACT--AAATG-AA-ATT-AA-Tt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-------------A--TA-TGTGAAA-TCta
gi|2 : CAGGTATTAGAAAA-----AGCTGTTCT-T-CATAACTTATATC--ATACACTTATC--ACTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGTAA-TATATTTGTACACTGACAATAA-CGTAC-TCGTG--CCAATTTGCAACTG-CTCTGGCGTGTGTG-CAATTCATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGAAAACATAAGCTATCATTTATTTATTTATTTTTT------------T-----TTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAAT
gi|2 : CAGAGAAGT-T---T-ATCTAAATTACT----TGAAAA-TTTCAT--TATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCCTTTCTTCTCC-A--ATGT----A-GTCTAT-A---AC--AT-----------------ATGCAT--CGA-TATC----CCTGAA-CC---GT-TT-T--CG-AAACAGAATATAATTAA-G-T-TTCC----GCGAATTTTA---------------AATCAGTCAC-GATT--ATCC--TG-TAT-TTT----TA--CCTATACTAC-A---AGCTGAAT-TAAAAT-A----ATTA----TTG----TCA----CT-T-T--TC-T-------------T-TTGA------ACAAA--CGCA-GG--CCC-GC-T----TTT--TATTGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTT----T-C--CGG--------TGAGGAA-CATCCATCCCCTTG--C-AAAGAATCATACGCCCCGACGCAAAATG-AATATT-AA-GAAG--CGC--GG-ATTCGCAATGAG----TCT--T-TATTT---AATTCCATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGC-ACATAATAGCA-G--------GAGGGGGGGGGGGGGG-GGGGGG------CTGGAA--------ATCTTTGCCGC-AAAAGTTAA-A-AATATTTTAACTA------T-ATTAATCCA--ATTTTGT----GACG-A-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAA-CGTCC-ATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TA-ATCATGACACTC-TA-CAGTC----AGAGCGTC-----TCGTCACA--CACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTGA-CGC-ATCGTAGG-GTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A--CAATTG-GTC-A--T----TGAAA-TCACTCAAGttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|20 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttaGTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-AAATTAGTTAAT---ATA-A--TA-T
gi|21 : CT-------------ATATGCAT-TCGA-TAG--------GAA-CC---CT-TTCT--CG-AA-CAGAATATAATTAA-GTT-TTCC----TCGAATTTTATGAAA-C-CGTTCTAAGACAGCCACTGATT--A--C--TA-TAT-TTT----TA--aaaccgaaaaata
gi|23 : ggcTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT-----T-GTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATAatcatc
gi|24 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT-----T-GTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|25 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT-----T-GTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|26 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT-----T-GTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|27 : GCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AA-CTCATGA-A-AC-TA-CAGTCA---AAGGCGTC----TTCGCTTCA--CACTTGTGATGT
gi|28 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT-----T-GTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTT
gi|29 : GTATTA-AGTTAGTAAC---AAAACTGAAATATTTC
gi|29 : TCAGAGAAGT-T---TTATCTAAATTACGTGACTGAAAAATTTCAT--agagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|3 : gtattaagttagtaacaaaactgaaatattTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGT--T-TTCATAACTTAT---CAATACATTT-----ACTCTTAATTT--TCATC-TCATAGAGGATGCA-TATCATTACT-AAATTC--GTGGTGGTTTCTGC-GGTGGATTAAGGTGTGTGCATGCGTAAATA---TTGTACACTGAC-ATAAACGTAC--CGTAG-CCAATTTGCAACTGGCTCTGGCGT-GGT--CAATT-ATAATTTTAAGACAAAGGT-ATATGTTTNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCGACCT-ACCG-ACCTTTT-AAAATCTTAGGTAACC--GGAAACATAA-CTAT-ATTATTTATTTATTTTTTT------------TTTTTGT-------GCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCgtt
gi|3 : TCAGAGAAGT-T---TTATCTAAATTACT----TGAAAAATTTCATATT--CGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTTCTTCTCC------------ACATGTAG-AT--CT--ATAC-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTT----------------AAATCAGTCACTGAT---A--C--TG-TAT-TTT----TA--CCTATACTAC-----AACTGAAT-TAAA-T-A----ATTA----T-G----TCAAC--CT-T-T--TC-T-------------T-TT-G------ACAAA--CGCA-GG--CC--GC-T----TT-CTTAT-GTTG------TAA-GGGGACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTG--C-AAAGAATCATACGCCCCGACG--AAATG-AATATT-AA---GGAACGC--GGAAT-C-CAAT-AGT----CT--T-TATTT--AATTTCCAT-TCGATAA-CACATCGTGT-TAAACTATTTCTC-GCGAA-TAATAGCATG--------GAGG----------GG-GGGGGGGGGGGGCTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTTATCCA-TTTT---T----GACGA--TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGT-AACG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TA-ATCATGA-A-TCTTA-CAGTC----AGAGCGTC----TTCGTCACA--CACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGATC--AG--GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A--CAAT---CTG-G--TATTGTGAAA-TCACTCAAagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|30 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTGT---TTAT---GATTATG----TGAAATATCTTAT--TTCCATCCAATTTACACAA-CA
gi|31 : aaccagatgaaatattAGT-T---TCATCTAAATTACG----AGAAAAATTTTAT--C--CACCCAATTTTCATAA-CAGCA-GGA-------t
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A--CAAT----TA-A--TA-TGTAAAA-TCACTGAAGttga
gi|4 : --ATCT-------------ACATACAT-TCGA-TAGT----CCTGAAACC---GT-CTCT--CGCAA-CAGAATATAGCTAACG-TCTTCCAAA-GCAA--CTTATG-AAAC-CGTTCTAAATCA-CCAC-GATA--A--C--TGATGT-TTT----TT--C--ATCTCACTACTCAAC-GAAT-TAAA--------ATTA----T-G----C-AGC--CTGT-C--TC-T-------------T----G------ACAAA--CGCA-GGGGCC--GCCT----TTTCTTAT-GTTGACTTGATAA-GGG-ACG-------CA-C--G---------TTATGT---T-GG---------------------G--------TGCG--------CATTCTCTCGA---GGAGACT-ATATGTCCCGACG--AAATGGAATATT-AA-TAAGAACAC--AGAATTC-AACC-AGTTTTTCTATTATATTCT-AAATTCCAT-T-GATAA-CA-ATCGTATGTA--CTGTTTCTC-AC-AT-TAATGGAATGATTGAAGGGGGG----------GG-GGGGGG------GGGGAGGGGGGAACATACTT-CCGCTAAAA--T-ATA-AATATTTCAACCC------TTATTAATTCAATATT---TT---GATGAA-TG-CCTGCTTTGTCATC-TTGG---AACT-CG-TGT-ACGGACGCATA------TC-ATATAATAAGATGT-A-CA-CCCATGCT-GCCAAACTCAAAATT-CCCCAGATT-TCT-------CA--TA-A-----A-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCA--CACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCAAGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAG-AGCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTT----AGTTTAATT-AATTA-TGTGAAA-TC
gi|5 : gTCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CT-CA-CAGAATATAATTAA-G-T-TTCC----ACGAATT----------------TAAATCCGTCACTGATT--A--C--TG-TAT-GTT----TA--GCTATAC-----CCCATCTAAAT-TAAA-A-A----ATAT----T-G----TCAAC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--CC--GC-T----TTTCTTAT-GTTG------TAA-GGG-ACA-------CA-CT-G---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGAGGAA-CATCCATTCCCTTtaaca
gi|5 : TTCCCT--T-TATTTT-AAATTCCAT-TCGATAAACA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGTATG--------GAGG----------GGGGGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTCACTA------T-ATTAATCCA-TATT---T----GATAAA-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTC----AGAGCATC----TTCGTCTCA--CACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A--CAAT---tattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|6 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatccaCCGATTAAAA-CCA-CCCTT-CTTTTCTAGTCGTCT----ATGTGTATTATCAACTAATCTCTCTTAATCCCTAATATACATATCGAGTAATGCTCCTTGAG-CCCGTGTCTTCTTTCG-AA-C-GAACA--ATTTA-G-T-TTTCCAGAGCGA---------------GTTC-AGAT-AGACGCTGATTCTA--CAATG-AATATGT----TAATCTTATA--ATTACATGGCC--AT-AACA-TTA----ATTG----T-T----TC-GCAACT-T-CACTC-C-------------T-T--GGTTGAAACAAAAGCGCAAGG--AC--AG-TAAACTACCTTA--GTTG------TAACGGG-AGGGCCCTAACA-CTAG---------CTTTGTGTGT-GG--CGTT-TTC----T-C--CGG--------TGAGGAA-CAT-CATTCCCcaatttaagaaattt
gi|6 : TCC-CAAT-G--TTTTGT--T-TATTTTTAAATTC-AT-TTCATAA----ATCGTGTGTAA-CTTATTCTC-GC-AT-TAATAGCATG--------G-GG----------GG-GGGGGG------CGGGaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|7 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgaggaacatcatCAGAGAGGC-TAAATTATCTA--TTATG----TAAAAACTTTCAT--T--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCCCT-CTTCTCTTATCGTCT------------------------T-------------ATATGCAC-TCGA-TAG--------GAA-CC---AT-TTCT--CG-AA-CAGA--ATAATGAA-GTT-TTCC----GCGAATTTTATA-AA------TCT-----AGTCACTGATT--A------------TCT----CA---CTG------TACTC----------------A----ATTA----T-G----TCAGC--CT-T-C--TCTT-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTAT-GTTG------CAA-GAG-ACG-------CA-CT-A---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGA-GAA-CATTCATTCCTT--AAC-AAAG----------------------------ATT-AATTAAGCACAC--GGAATTC-CAAT-A-TATTTCT--T-TATTTC-AAACTCCAT-TCAATAA-gggagggggggggggcgtgtgcggag
gi|8 : aaatatta--------ATCTAT-CCGCTAAAAGTT-G-A-AATATTTTAACTACATGTAT-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TGT-ACGGACGCATAG-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCAAA-----------------TA-ATCATGA-A-TC-TA-CAGTCGCTTAGAGCGTC----TTCGTCTCA--CACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A--CAGT----TA-A--TA-TGTGAAA-TCACTTA
gi|9 : TTATG-AA-CGCGTTCTACAAAAGCCACAGATT--A--------TAT-CTCATCGTA--CTCATGCAGCTGATTTAGTAAACACAAA-T-ATCTAATTAGCATT-GATATTCAGC--CT-TAC--CC-TAAAACATTCTTTAT-T--G------ACAAA--CACC-GA--CC--GCAT----TTTCTTAG-GTTG------CGA-GGT-ACG-------CA-CT-GCATGCACTGTTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCT---ACCAGAGAATGCGACGTTCCGGCG--AAATG-AAGAGT-AA------ACGCAGGGAATTC-CAAC-A-TACTTCT--T-TATTTT-ATTCTCCAT-TCGATAA-CA-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Unaligned ( gi|33 ): TATGTGAAATATCTTATTCATCCAATTTACACAACATC
Alignments
lowQualScore : 2222 333333 11111 33333 222 111 3333 2222 1 2 1 1 33 2 1 1 1 22 1 33 22 11 222 1 1 111 111 11 1 1 2222 1 555555555 666666666666 1 111 3333333333333333333333333333333333 111 1111 11111 55555555555555555 1 8888888888888888888888888888888888888888888888 11111 11111 33333333333 11111 11 6666666666666666666666666666666666666666 11 77777777777777777777777777777777777777777777777777777777 11111111 111111 11 111 11 3333333333333333333333 111111 22222222 111111 1111 222222 111 2222 1111 44444444444444444444444
lowQualScore : 1 3333 000000 1 1 99999 33333 6 333 7 999 7 77 9999 4444 3 0 6 3 3 3 66 3 7 3 3 6 00 3 6 6 6 7 11 00 7 44 333 0 3 555 1 555 7 44 3 3 2222 3 555555555 888888888888 0 1 777 4444444444444444444444444444444444 5 000 0 0 2222 1 99999 6 8 77777777777777777 0 8 6 0 4444444444444444444444444444444444444444444444 5 5 55555 4 777 4 66 4 4 1 4 4 4 4 77777 1 0 44444444444 0 3 55 22222 4 4 8888 9999 22 2 333 5555 5555 2 5555 4444444444444444444444444444444444444444 33 33 66 33 5 5555 88 2 33333333333333333333333333333333333333333333333333333333 2 6666 2 33 00000000 2 444444 1 77 5 4 5 44 7 99 0 5 5 999 66 5 00 5 5 5 5 6 6 6 3333333333333333333333 6 999999 1 44444444 5 1 6 666 5 444444 5 5 888 5555 5 5 1 2 55 5 5 5 555555 5 5 5 66 5 4 66 1 111 0 2 66 5 5 5 5 5 0000 0000 0 66 3 44 555 3 44 3 88 77777 555 3 1 2 5 0 2 2 33 2 2 99999999999999999999999 33 2
lowQualScore : . .... ...... . . ..... ..... . ... . ... . .. .... .... . . . . . . .. . . . . . .. . . . . . .. .. . .. ... . . ... . ... . .. . . .... . ......... ............ . . ... .................................. . ... . . .... . ..... . . ................. . . . . .............................................. . . ..... . ... . .. . . . . . . . ..... . . ........... . . .. ..... . . .... .... .. . ... .... .... . .... ........................................ .. .. .. .. . .... .. . ........................................................ . .... . .. ........ . ...... . .. . . . .. . .. . . . ... .. . .. . . . . . . . ...................... . ...... . ........ . . . ... . ...... . . ... .... . . . . .. . . . ...... . . . .. . . .. . ... . . .. . . . . . .... .... . .. . .. ... . .. . .. ..... ... . . . . . . . .. . . ....................... .. .
lowQualScore : 0 0000 000000 0 0 55555 33333 7 333 3 777 3 33 0000 7777 3 7 7 7 3 3 77 3 3 3 3 0 00 3 7 7 7 3 77 77 3 77 333 7 3 333 0 000 3 77 3 3 0000 3 000000000 333333333333 0 0 555 0000000000000000000000000000000000 7 000 1 1 1111 4 77777 7 0 00000000000000000 0 0 8 8 8888888888888888888888888888888888888888888888 0 0 88888 4 888 4 11 4 4 9 4 4 4 4 33333 9 7 00000000000 7 4 55 66666 0 0 5555 3333 11 9 999 7777 7777 7 7777 8888888888888888888888888888888888888888 77 99 33 77 3 7777 22 7 66666666666666666666666666666666666666666666666666666666 9 1111 9 99 44444444 9 555555 4 99 7 9 7 11 2 22 1 7 7 555 99 0 11 0 0 7 7 7 7 7 3333333333333333333333 7 222222 5 22222222 7 7 6 777 7 444444 0 0 888 6666 0 0 0 5 22 0 0 0 999999 0 0 0 11 0 4 11 1 444 1 5 99 0 0 0 0 0 0000 6666 8 99 1 22 444 1 22 1 55 11111 000 8 0 9 8 9 9 7 77 7 7 00000000000000000000000 99 9
consensus : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAATA-AT-TTGTACACTGACA-TAACGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCA--TT---TTTTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTAT-AT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
Reference ( family-1512 ) : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCATTAT-ATTACT-AAATTCGG-TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAATA-AT-TTGTACACTGACAATAACGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTG--CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT---TTTTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCTTTCTTCTCCTATCGTCT----ACGTGTAT-AT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
gi|1 : TTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACT-TTTATATTGATAAATTACATACAATG-GTTTA--AACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAATA-AT-TTGTACACTGACA-TAACGTAC--GTA-C-AATTTGCAACTGGCT-TGGCG-GTGT-CAATT--TAATTTTAAGACAA--GTA-TATGTTT---AAA-TAAAAAAAACATAAATACATATGAAAAAAAAAAA---TAAATTAAAAAAAAATAAA---AAGAAGCCGACCTA-CCG-ACCTTTTTAAAATCTTAGGTAACCG-G-AAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGT-T---TTGTCTAAATTACG----TGAAACATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCC-TTCTTCTCCTACCGTCTTATAATATGTAT-AT--ATGGATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATGAAA-C-CGTTCTAAATCAGTCACTGATT--A--T--TA-TAT-TTT----TA--GCTATACCACTATTCAACTGAAT-TAAA-T-A----ATTA----T-G----TCAGC--CT-T-C--TC-T-------------TAT--G------ACAAA--CGCA-GG--CA--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGTACGGT-TTC----T-C--CGG--------TGAGGGA-CATCCATTCCCTTG--C-AAAGAATCATACGTCCCGACG--AAATG-AATATTAAA-TAAGAACAC--GTAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCTAT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCTC-AC-AT-TAATAACATG--------GATT----------GA-GGGCGG------CCGGAA--------ATCTTT-CCGCAAAAAATT-G-A-AACATCTTAACTA------T-ATTAATCCA-TATT---T----GATGAA-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATACATGAGGATGT-A-CA-CC-ATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TA-CTCATGA-A-TC-TA-CAGTCA---AAAGCGTC----TTCGTCTCA--AACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-ATC--AAGTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---TAAT----TAGTTGA--TATGT--GAAA-TCACTCAAG
gi|10 : g------T-ATTAATCCA-TTTT---TTTTTGATGAAATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TGT-ATGGACGCATAA-----TCCATATATGGGGATGT-A-CG-CC-A-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-TA-CAGTCA----GAGCGTC----TTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-ATT--AGGTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A---CAAT----TG----G--TATGT--GAAATTCTCTCA
gi|11 : acGAA-CC---GT-GTCT--TG-AA-CACAATATGGTAAA-G-T-TT-TC-----CGAAATTTATG-AAAC-CGTTCTAAATCAATCACTGATT--A--C--TG-TAT-TTT----TA--TTTATCTCACTACTCAAGTGAAT-TGAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--TC--AC-T----TTTCTTA-TGTTG------CAA-ATG-ACG-------CA-C
gi|12 : agT-CCGCTTACA-CT-A-ATAAT-TTTCAACTA------A-ATGAATCCA-TATT---T----GACGAA-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TGT-AAGGACACATAA-----TC-ATATGTGAGA-------------ATGCT-GC--AATTCAAAATTTCCC
gi|13 : gagagagagaaagagagagagagagcaattaaaTCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCaata
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACA-TATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|18 : A-C-A----ATTA----T-G----TCAGC---T-T-C--TA-T-------------T-TCTG------ACATA--CGCA-GG--GCTGGC-T----TTT-TTA-TGTTG-------AA-AGG-ACG-------CAACT-GATT------TTTTGT---TTGGTGCGATCTTC----TAT--CGC--------TGAGGAAACATCCATTCC-TTGAA----AGAATGATACGTCCCGACT--AAATG-AA-ATT-AA-Tt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCta
gi|2 : CAGGTATTAGAAAA-----AGCTGTTC---TTCATAACTTATAT-CA-TACACTTATCA-CTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGTAATATAT-TTGTACACTGACAATAACGTACTCGTG-CCAATTTGCAACTG-CTCTGGCGTGTGTGCAATTCATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGAAAACATAAGCTATCA--TT---TATTTATTTATTTTT------------TTTTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAAT
gi|2 : CAGAGAAGT-T---T-ATCTAAATTACT----TGAAAA-TTTCAT--TATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCCTTTCTTCTCCAAT-GT------A-GTCTAT-A---AC--AT-----------------ATGCAT--CGA-TATC----CCTGAA-CC---GT-TT-T--CG-AAACAGAATATAATTAA-G-T-TT-CC----GCGAATTTTA---------------AATCAGTCAC-GATT--ATCC--TG-TAT-TTT----TA--CCTATACTAC-A---AGCTGAAT-TAAAAT-A----ATTA----TTG----TCA----CT-T-T--TC-T-------------T-TTGA------ACAAA--CGCA-GGC-CC--GC-T----TT--TTATTGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTT----T-C--CGG--------TGAGGAA-CATCCATCCCCTTG--C-AAAGAATCATACGCCCCGACGCAAAATG-AATATT-AA-GAAG--CGC--GG-ATTCGCAATGAG----TCT--T-TATTT---AATTCCATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGC-ACATAATAGCA-G--------GAGGGGGGGGGGGGGG-GGGGGG------CTGGAA--------ATCTTTGCCGC-AAAAGTTAA-A-AATATTTTAACTA------T-ATTAATCCA--ATTTTGT----GACG-A-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAA-CGTCC-ATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TA-ATCATGACACTC-TA-CAGTC----AGAGCGTC-----TCGTCACA--CACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTGA-CGC-ATCGTAGG-GTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A---CAAT----T-----GGTCAT-T--GAAA-TCACTCAAGttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|20 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttaGTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-AAATTA---
gi|21 : CT-------------ATATGCAT-TCGA-TAG--------GAA-CC---CT-TTCT--CG-AA-CAGAATATAATTAA-GTT-TT-CC----TCGAATTTTATGAAA-C-CGTTCTAAGACAGCCACTGATT--A--C--TA-TAT-TTT----TA--gttaatataatataaaccgaaaaata
gi|23 : ggcTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATAatcatc
gi|24 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|25 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|26 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|27 : GCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AA-CTCATGA-A-AC-TA-CAGTCA---AAGGCGTC----TTCGCTTCA--CACTTGTGATGT
gi|28 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTT
gi|29 : GTATTA-AGTTAGTAAC---AAAACTGAAATATTTC
gi|29 : TCAGAGAAGT-T---TTATCTAAATTACGTGACTGAAAAATTTCAT--agagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|3 : gtattaagttagtaacaaaactgaaatattTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTT---T-CATAACTTAT---CAATACATTTA----CTCTTAATTTT--CATC-TCATAGAGGATGCAT-ATCATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTA--A-ATATTGTACACTGACATAAACGTAC-CGTAGCCAATTTGCAACTGGCTCTGGCGTGGT--CAATT-ATAATTTTAAGACAAAGGT-ATATGTTTNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCGACCT-ACCG-ACCTTTT-AAAATCTTAGGTAACC--GGAAACATAA-CTAT-A-------TTATTTATTTATTTT------------TTTTTTTTGTGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCgtt
gi|3 : TCAGAGAAGT-T---TTATCTAAATTACT----TGAAAAATTTCATATT--CGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTTCTTCTCC------------ACATGTAG-AT--CT--ATAC-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTT----------------AAATCAGTCACTGAT---A--C--TG-TAT-TTT----TA--CCTATACTAC-----AACTGAAT-TAAA-T-A----ATTA----T-G----TCAAC--CT-T-T--TC-T-------------T-TT-G------ACAAA--CGCA-GG--CC--GC-T----TT-CTTA-TGTTG------TAA-GGGGACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTG--C-AAAGAATCATACGCCCCGACG--AAATG-AATATT-AA---GGAACGC--GGAAT-C-CAAT-AGT----CT--T-TATTT--AATTTCCAT-TCGATAA-CACATCGTGT-TAAACTATTTCTC-GCGAA-TAATAGCATG--------GAGG----------GG-GGGGGGGGGGGGCTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTTATCCA-TTTT---T----GACGA--TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGT-AACG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TA-ATCATGA-A-TCTTA-CAGTC----AGAGCGTC----TTCGTCACA--CACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGATC--AG--GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAATCTGGT-----A--T-TGT--GAAA-TCACTCAAagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|30 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTGT---TTAT---GATTATG----TGAAATATCTTAT--TTCCATCCAATTTACACAA-CA
gi|31 : aaccagatgaaatattAGT-T---TCATCTAAATTACG----AGAAAAATTTTAT--C--CACCCAATTTTCATAA-CAGCA-GGA-------t
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A---CAAT----TA----A--TATGT--AAAA-TCACTGAAGttga
gi|4 : --ATCT-------------ACATACAT-TCGA-TAGT----CCTGAAACC---GT-CTCT--CGCAA-CAGAATATAGCTAACG-TCTT-CCAAA-GCAA--CTTATG-AAAC-CGTTCTAAATCA-CCAC-GATA--A--C--TGATGT-TTT----TT--C--ATCTCACTACTCAAC-GAAT-TAAA--------ATTA----T-G----C-AGC--CTGT-C--TC-T-------------T----G------ACAAA--CGCA-GGGGCC--GCCT----TTTCTTA-TGTTGACTTGATAA-GGG-ACG-------CA-C--G---------TTATGT---T-GG---------------------G--------TGCG--------CATTCTCTCGA---GGAGACT-ATATGTCCCGACG--AAATGGAATATT-AA-TAAGAACAC--AGAATTC-AACC-AGTTTTTCTATTATATTCT-AAATTCCAT-T-GATAA-CA-ATCGTATGTA--CTGTTTCTC-AC-AT-TAATGGAATGATTGAAGGGGGG----------GG-GGGGGG------GGGGAGGGGGGAACATACTT-CCGCTAAAA--T-ATA-AATATTTCAACCC------TTATTAATTCAATATT---TT---GATGAA-TG-CCTGCTTTGTCATC-TTGG---AACT-CG-TGT-ACGGACGCATA------TC-ATATAATAAGATGT-A-CA-CCCATGCT-GCCAAACTCAAAATT-CCCCAGATT-TCT-------CA--TA-A-----A-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCA--CACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCAAGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAG-AGCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTTAGTTTAAT----T-----AATTATGT--GAAA-TC
gi|5 : gTCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CT-CA-CAGAATATAATTAA-G-T-TT-CC----ACGAATT----------------TAAATCCGTCACTGATT--A--C--TG-TAT-GTT----TA--GCTATAC-----CCCATCTAAAT-TAAA-A-A----ATAT----T-G----TCAAC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACA-------CA-CT-G---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGAGGAA-CATCCATTCCCTTtaaca
gi|5 : TTCCCT--T-TATTTT-AAATTCCAT-TCGATAAACA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGTATG--------GAGG----------GGGGGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTCACTA------T-ATTAATCCA-TATT---T----GATAAA-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTC----AGAGCATC----TTCGTCTCA--CACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A---CAAT----C-----A---ATTTAAGAAA-tattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|6 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatccaCCGATTAAAA-CCA--CCCTTCTTTTCTAGTCGTCT----ATGTGTATTATCAACTAATCTCTCTTAATCCCTAATATACATATCGAGTAATGCTCCTTGAG-CCCGTGTCTTCTTTCG-AA-C-GAACA--ATTTA-G-T-TT-TCCAGAGCGA---------------GTTC-AGAT-AGACGCTGATTCTA--CAATG-AATATGT----TAATCTTATA--ATTACATGGCC--AT-AACA-TTA----ATTG----T-T----TC-GCAACT-T-CACTC-C-------------T-T--GGTTGAAACAAAAGCGCAAGG--AC--AG-TAAACTACCTTA--GTTG------TAACGGG-AGGGCCCTAACA-CTAG---------CTTTGTGTGT-GG--CGTT-TTC----T-C--CGG--------TGAGGAA-CAT-CATTCCCtt
gi|6 : TCC-CAAT-G--TTTTGT--T-TATTTTTAAATTC-AT-TTCATAA----ATCGTGTGTAA-CTTATTCTC-GC-AT-TAATAGCATG--------G-GG----------GG-GGGGGG------CGGGaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|7 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgaggaacatcatCAGAGAGGC-TAAATTATCTA--TTATG----TAAAAACTTTCAT--T--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCCCT-CTTCTCTTATCGTCT------------------------T-------------ATATGCAC-TCGA-TAG--------GAA-CC---AT-TTCT--CG-AA-CAGAATA--ATGAA-G-T-TTTCC----GCGAATTTTATA-AA------TCTA-----GTCACTGATT--A------------TCT----CA--C---TG----TACTCAA--------------------TTA----T-G----TCAGC--CT-T-C--TC-T-------------T-TT-G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------CAA-GAG-ACG-------CA-CT-A---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGA-GAA-CATTCATTCCTT--AAC-AAAG----------------------------ATT-AATTAAGCACAC--GGAATTC-CAAT-A-TATTTCT--T-TATTTC-AAACTCCAT-TCAATAA-gggagggggggggggcgtgtgcggag
gi|8 : aaatatta--------ATCTAT-CCGCTAAAAGTT-G-A-AATATTTTAACTACATGTAT-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TGT-ACGGACGCATAG-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCAAA-----------------TA-ATCATGA-A-TC-TA-CAGTCGCTTAGAGCGTC----TTCGTCTCA--CACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAGT----TA----A--TATGT--GAAA-TCACTTA
gi|9 : TTATG-AA-CGCGTTCTACAAAAGCCACAGATT--A--------TAT-CTCATCGTA--CTCATGCAGCTGATTTAGTAAACACAAA-T-ATCTAATTAGCATT-GATATTCAGC--CT-TAC--CC-TAAAACATTCTTTAT-T--G------ACAAA--CACC-GA--CC--GCAT----TTTCTTA-GGTTG------CGA-GGT-ACG-------CA-CT-GCATGCACTGTTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCT---ACCAGAGAATGCGACGTTCCGGCG--AAATG-AAGAGT-AA------ACGCAGGGAATTC-CAAC-A-TACTTCT--T-TATTTT-ATTCTCCAT-TCGATAA-CA-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Unaligned ( gi|33 ): TATGTGAAATATCTTATTCATCCAATTTACACAACATC
Alignments
lowQualScore : 2222 333333 11111 33333 222 111 3333 2222 1 1 1 1 11 1 1 22 1 1 22 1 1 22 11 222 1 1 111 111 11 1 1 2222 1 1 33333 666666666666 1 111 3333333333333333333333333333333333 111 1111 11111 55555555555555555 1 8888888888888888888888888888888888888888888888 11111 11111 33333333333 111111111 666666666666666666666666666666666666666 11 77777777777777777777777777777777777777777777777777777777 11111111 111111 11 111 11 3333333333333333333333 111111 22222222 111111 1111 222222 111 2222 1111 44444444444444444444444
lowQualScore : 1 3333 000000 1 1 99999 33333 6 333 7 999 7 77 9999 4444 3 0 6 3 3 3 88 3 3 00 3 3 00 3 6 6 6 7 7 3 00 7 44 333 0 3 555 1 555 7 44 3 3 2222 3 2 7 33333 888888888888 0 1 777 4444444444444444444444444444444444 5 000 0 0 2222 1 99999 6 8 77777777777777777 0 8 5 0 2222222222222222222222222222222222222222222222 5 5 55555 8 777 66 4 4 4 4 4 4 77777 1 0 44444444444 0 3 55 666666666 8888 4 88 2 5 5555 5555 2 5555 444444444444444444444444444444444444444 33 33 66 33 5 5555 88 2 33333333333333333333333333333333333333333333333333333333 2 6666 2 33 00000000 2 444444 1 77 5 4 5 44 7 99 0 5 5 999 66 5 00 5 5 5 5 6 6 6 3333333333333333333333 6 999999 1 44444444 5 1 6 666 5 444444 5 5 888 5555 5 5 1 2 55 5 5 5 555555 5 5 5 66 5 4 66 1 111 0 2 66 5 5 5 5 5 0000 0000 0 66 3 44 555 3 44 3 88 77777 555 3 1 2 5 0 2 2 33 2 2 99999999999999999999999 33 2
lowQualScore : . .... ...... . . ..... ..... . ... . ... . .. .... .... . . . . . . .. . . .. . . .. . . . . . . . .. . .. ... . . ... . ... . .. . . .... . . . ..... ............ . . ... .................................. . ... . . .... . ..... . . ................. . . . . .............................................. . . ..... . ... .. . . . . . . ..... . . ........... . . .. ......... .... . .. . . .... .... . .... ....................................... .. .. .. .. . .... .. . ........................................................ . .... . .. ........ . ...... . .. . . . .. . .. . . . ... .. . .. . . . . . . . ...................... . ...... . ........ . . . ... . ...... . . ... .... . . . . .. . . . ...... . . . .. . . .. . ... . . .. . . . . . .... .... . .. . .. ... . .. . .. ..... ... . . . . . . . .. . . ....................... .. .
lowQualScore : 0 0000 000000 0 0 55555 33333 7 333 3 777 3 33 0000 7777 3 7 7 3 3 3 33 3 3 77 3 3 00 3 7 7 7 3 3 3 77 3 77 333 7 3 333 0 000 3 77 3 3 0000 3 0 3 33333 333333333333 0 0 555 0000000000000000000000000000000000 7 000 1 1 1111 4 77777 7 0 00000000000000000 0 0 0 8 4444444444444444444444444444444444444444444444 0 0 88888 9 888 11 4 4 4 4 4 4 33333 9 7 00000000000 7 4 55 111111111 5555 7 33 9 3 7777 7777 7 7777 888888888888888888888888888888888888888 77 99 33 77 3 7777 22 7 66666666666666666666666666666666666666666666666666666666 9 1111 9 99 44444444 9 555555 4 99 7 9 7 11 2 22 1 7 7 555 99 0 11 0 0 7 7 7 7 7 3333333333333333333333 7 222222 5 22222222 7 7 6 777 7 444444 0 0 888 6666 0 0 0 5 22 0 0 0 999999 0 0 0 11 0 4 11 1 444 1 5 99 0 0 0 0 0 0000 6666 8 99 1 22 444 1 22 1 55 11111 000 8 0 9 8 9 9 7 77 7 7 00000000000000000000000 99 9
consensus : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTA-TAT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
Reference ( family-1512 ) : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTA-TAT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
gi|1 : TTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACT-TTTATATTGATAAATTACATACAATG-GTTTA--AACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC--GTA-C-AATTTGCAACTGGCT-TGGCG-GTGT-CAATT--TAATTTTAAGACAA--GTA-TATGTTT---AAA-TAAAAAAAACATAAATACATATGAAAAAAAAAAA---TAAATTAAAAAAAAATAAA---AAGAAGCCGACCTA-CCG-ACCTTTTTAAAATCTTAGGTAACCG-G-AAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGT-T---TTGTCTAAATTACG----TGAAACATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAG-CCCTTCTTCTCCTACCGTCTTATAATATGTA-TAT--ATGGATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATGAAA-C-CGTTCTAAATCAGTCACTGAT--TA--T--TA--TATTTT----TAGCTATACCACTATTCAACTGAAT-TAAA-TA----ATTA----T-G----TCAGC--CT-T--CTC-T-------------TAT--G------ACAAA--CGC-AGG--CA--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGTACGGT-TTC----T-C--CGG--------TGAGGGA-CATCCATTCCCTTG--C-AAAGAATCATACGTCCCGACG--AAATG-AATATTAAA-TAAGAACAC--GTAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCTAT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCTC-AC-AT-TAATAACATG--------GATT----------GA-GGGCGG------CCGGAA--------ATCTTT-CCGCAAAAAATT-G-A-AACATCTTAACTA------T-ATTAATCCA-TATT---T----GATGAA-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATACATGAGGATGT-A-CA-CC-ATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TA-CTCATGA-A-TC-TA-CAGTCA---AAAGCGTC----TTCGTCTCA--AACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-ATC--AAGTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---TAAT----TAGTTGA--TATGT--GAAA-TCACTCAAG
gi|10 : g------T-ATTAATCCA-TTTT---TTTTTGATGAAATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TGT-ATGGACGCATAA-----TCCATATATGGGGATGT-A-CG-CC-A-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-TA-CAGTCA----GAGCGTC----TTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-ATT--AGGTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A---CAAT----TG----G--TATGT--GAAATTCTCTCA
gi|11 : acGAA-CCGT---GTC--TTG-AA-CACAATATGGTAAA-G-T-TT-TC-----CGAAATTTATG-AAAC-CGTTCTAAATCAATCACTGAT--TA--C--TG--TATTTT----TATTTATCTCACTACTCAAGTGAAT-TGAA-TA----ATTA----T-G----CCAGC--CT-T--CTCTT-------------T-T--G------ACAAA--TGC-AGG--TC--AC-T----TTTCTTA-TGTTG------CAA-ATG-ACG-------CA-C
gi|12 : agT-CCGCTTACA-CT-A-ATAAT-TTTCAACTA------A-ATGAATCCA-TATT---T----GACGAA-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TGT-AAGGACACATAA-----TC-ATATGTGAGA-------------ATGCT-GC--AATTCAAAATTTCCC
gi|13 : gagagagagaaagagagagagagagcaattaaaTCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCaata
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACA-TATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|18 : A-CA----ATTA----T-G----TCAGC---T-T--CTA-T-------------T-TCTG------ACATA--CGC-AGG--GCTGGC-T----TTT-TTA-TGTTG-------AA-AGG-ACG-------CAACT-GATT------TTTTGT---TTGGTGCGATCTTC----TAT--CGC--------TGAGGAAACATCCATTCC-TTGAA----AGAATGATACGTCCCGACT--AAATG-AA-ATT-AA-Tt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCta
gi|2 : CAGGTATTAGAAAA-----AGCTGTTC---TTCATAACTTATAT-CA-TACACTTATCA-CTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGTAA-TATATTTGTACACTGACAATAA-CGTACTCGTG-CCAATTTGCAACTG-CTCTGGCGTGTGTGCAATTCATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGAAAACATAAGCTATCATTTA-----TTTATTTATTTTT------------TTTTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAAT
gi|2 : CAGAGAAGT-T---T-ATCTAAATTACT----TGAAAA-TTTCAT--TATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCCTTTCTTCTCCAAT-GT------A-GTCTA-TA---AC--AT-----------------ATGCAT--CGA-TATC----CCTGAA-CCGT---TT---TCG-AAACAGAATATAATTAA-G-T-TT-CC----GCGAATTTTA---------------AATCAGTCAC-GAT--TATCC--TG--TATTTT----TACCTATACTAC-A---AGCTGAAT-TAAAATA----ATTA----TTG----TCA----CT-T--TTC-T-------------T-TTGA------ACAAA--CGC-AGGC-CC--GC-T----TT--TTATTGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTT----T-C--CGG--------TGAGGAA-CATCCATCCCCTTG--C-AAAGAATCATACGCCCCGACGCAAAATG-AATATT-AA-GAAG--CGC--GG-ATTCGCAATGAG----TCT--T-TATTT---AATTCCATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGC-ACATAATAGCA-G--------GAGGGGGGGGGGGGGG-GGGGGG------CTGGAA--------ATCTTTGCCGC-AAAAGTTAA-A-AATATTTTAACTA------T-ATTAATCCA--ATTTTGT----GACG-A-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAA-CGTCC-ATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TA-ATCATGACACTC-TA-CAGTC----AGAGCGTC-----TCGTCACA--CACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTGA-CGC-ATCGTAGG-GTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A---CAAT----T-----GGTCAT-T--GAAA-TCACTCAAGttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|20 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttaGTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-AAATTA---
gi|21 : CT-------------ATATGCAT-TCGA-TAG--------GAA-CCCT---TTC--TCG-AA-CAGAATATAATTAA-GTT-TT-CC----TCGAATTTTATGAAA-C-CGTTCTAAGACAGCCACTGAT--TA--C--TA--TATTTT----TAgttaatataatataaaccgaaaaata
gi|23 : ggcTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATAatcatc
gi|24 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|25 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|26 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|27 : GCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AA-CTCATGA-A-AC-TA-CAGTCA---AAGGCGTC----TTCGCTTCA--CACTTGTGATGT
gi|28 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTT
gi|29 : GTATTA-AGTTAGTAAC---AAAACTGAAATATTTC
gi|29 : TCAGAGAAGT-T---TTATCTAAATTACGTGACTGAAAAATTTCAT--agagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|3 : gtattaagttagtaacaaaactgaaatattTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTT---T-CATAACTTAT---CAATACATTTA----CTCTTAATTTT--CATC-TCATAGAGGATGCAT-ATCATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAAATA---TTGTACACTGACA-TAAACGTAC-CGTAGCCAATTTGCAACTGGCTCTGGCGTG-GT-CAATT-ATAATTTTAAGACAAAGGT-ATATGTTTNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCGACCT-ACCG-ACCTTTT-AAAATCTTAGGTAACC--GGAAACATAA-CTAT-A--TT-----ATTTATTTATTTT------------TTTTTTTTGTGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCgtt
gi|3 : TCAGAGAAGT-T---TTATCTAAATTACT----TGAAAAATTTCATATT--CGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTTCTTCTCC------------ACATGTA-GAT--CT--ATAC-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTT----------------AAATCAGTCACTGAT---A--C--TG--TATTTT----TACCTATACTAC-----AACTGAAT-TAAA-TA----ATTA----T-G----TCAAC--CT-T--TTC-T-------------T-TT-G------ACAAA--CGC-AGG--CC--GC-T----TT-CTTA-TGTTG------TAA-GGGGACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTG--C-AAAGAATCATACGCCCCGACG--AAATG-AATATT-AA---GGAACGC--GGAAT-C-CAAT-AGT----CT--T-TATTT--AATTTCCAT-TCGATAA-CACATCGTGT-TAAACTATTTCTC-GCGAA-TAATAGCATG--------GAGG----------GG-GGGGGGGGGGGGCTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTTATCCA-TTTT---T----GACGA--TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGT-AACG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TA-ATCATGA-A-TCTTA-CAGTC----AGAGCGTC----TTCGTCACA--CACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGATC--AG--GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAATCTGGT-----A--T-TGT--GAAA-TCACTCAAagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|30 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTGT---TTAT---GATTATG----TGAAATATCTTAT--TTCCATCCAATTTACACAA-CA
gi|31 : aaccagatgaaatattAGT-T---TCATCTAAATTACG----AGAAAAATTTTAT--C--CACCCAATTTTCATAA-CAGCA-GGA-------t
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A---CAAT----TA----A--TATGT--AAAA-TCACTGAAGttga
gi|4 : --ATCT-------------ACATACAT-TCGA-TAGT----CCTGAAACCGT---CTC--TCGCAA-CAGAATATAGCTAACG-TCTT-CCAAA-GCAA--CTTATG-AAAC-CGTTCTAAATCA-CCAC-GAT--AA--C--TGA-TGTTTT----TTC--ATCTCACTACTCAAC-GAAT-TAAA-------ATTA----T-G----C-AGC--CTGT--CTC-T-------------T----G------ACAAA--CGC-AGGGGCC--GCCT----TTTCTTA-TGTTGACTTGATAA-GGG-ACG-------CA-C--G---------TTATGT---T-GG---------------------G--------TGCG--------CATTCTCTCGA---GGAGACT-ATATGTCCCGACG--AAATGGAATATT-AA-TAAGAACAC--AGAATTC-AACC-AGTTTTTCTATTATATTCT-AAATTCCAT-T-GATAA-CA-ATCGTATGTA--CTGTTTCTC-AC-AT-TAATGGAATGATTGAAGGGGGG----------GG-GGGGGG------GGGGAGGGGGGAACATACTT-CCGCTAAAA--T-ATA-AATATTTCAACCC------TTATTAATTCAATATT---TT---GATGAA-TG-CCTGCTTTGTCATC-TTGG---AACT-CG-TGT-ACGGACGCATA------TC-ATATAATAAGATGT-A-CA-CCCATGCT-GCCAAACTCAAAATT-CCCCAGATT-TCT-------CA--TA-A-----A-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCA--CACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCAAGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAG-AGCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTTAGTTTAAT----T-----AATTATGT--GAAA-TC
gi|5 : gTCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCT-CA-CAGAATATAATTAA-G-T-TT-CC----ACGAATT----------------TAAATCCGTCACTGAT--TA--C--TG--TATGTT----TAGCTATAC-----CCCATCTAAAT-TAAA-AA----ATAT----T-G----TCAAC--CT-T--CTCTT-------------T-T--G------ACAAA--TGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACA-------CA-CT-G---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGAGGAA-CATCCATTCCCTTtaaca
gi|5 : TTCCCT--T-TATTTT-AAATTCCAT-TCGATAAACA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGTATG--------GAGG----------GGGGGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTCACTA------T-ATTAATCCA-TATT---T----GATAAA-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTC----AGAGCATC----TTCGTCTCA--CACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A---CAAT----C-----A---ATTTAAGAAA-tattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|6 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatccaCCGATTAAAA-CCA--CCCTTCTTTTCTAGTCGTCT----ATGTGTATTATCAACTAATCTCTCTTAATCCCTAATATACATATCGAGTAATGCTCCTTGAGCCCGTGTCTTCTTTCG-AA-C-GA--ACAATTTA-G-T-TT-TCCAGAGCGA---------------GTTC-AGAT-AGACGCTGATTCTA--CAATGAATATGTT----AATCT-TATAATTACATGGCC--AT-AACATTA----ATTG----T-T----TC-GCAACT-TCACTC-C-------------T-T--GGTTGAAACAAAAGCGCAAGG--AC--AG-TAAACTACCTTA--GTTG------TAACGGG-AGGGCCCTAACA-CTAG---------CTTTGTGTGT-GG--CGTT-TTC----T-C--CGG--------TGAGGAA-CAT-CATTCCCtt
gi|6 : TCC-CAAT-G--TTTTGT--T-TATTTTTAAATTC-AT-TTCATAA----ATCGTGTGTAA-CTTATTCTC-GC-AT-TAATAGCATG--------G-GG----------GG-GGGGGG------CGGGaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|7 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgaggaacatcatCAGAGAGGC-TAAATTATCTA--TTATG----TAAAAACTTTCAT--T--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCCCT-CTTCTCTTATCGTCT------------------------T-------------ATATGCAC-TCGA-TAG--------GAA-CCAT---TTC--TCG-AA-CAGAATA--ATGAA-G-T-TTTCC----GCGAATTTTATA-AA------TCTA-----GTCACTGAT--TA------------TCT----CAC---TG----TACTCAA-------------------TTA----T-G----TCAGC--CT-T--CTC-T-------------T-TT-G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------CAA-GAG-ACG-------CA-CT-A---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGA-GAA-CATTCATTCCTT--AAC-AAAG----------------------------ATT-AATTAAGCACAC--GGAATTC-CAAT-A-TATTTCT--T-TATTTC-AAACTCCAT-TCAATAA-gggagggggggggggcgtgtgcggag
gi|8 : aaatatta--------ATCTAT-CCGCTAAAAGTT-G-A-AATATTTTAACTACATGTAT-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TGT-ACGGACGCATAG-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCAAA-----------------TA-ATCATGA-A-TC-TA-CAGTCGCTTAGAGCGTC----TTCGTCTCA--CACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAGT----TA----A--TATGT--GAAA-TCACTTA
gi|9 : TTATG-AA-CGCGTTCTACAAAAGCCACAGAT--TA---------TATCTCATCGTACTCATGCAGCTGATTTAGTAAACACAAA-TATCTAATTAGCATT-GATATTCAGC--CT-TA-CCC-TAAAACATTCTTTAT-T--G------ACAAA--CAC-CGA--CC--GCAT----TTTCTTA-GGTTG------CGA-GGT-ACG-------CA-CT-GCATGCACTGTTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCT---ACCAGAGAATGCGACGTTCCGGCG--AAATG-AAGAGT-AA------ACGCAGGGAATTC-CAAC-A-TACTTCT--T-TATTTT-ATTCTCCAT-TCGATAA-CA-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Unaligned ( gi|33 ): TATGTGAAATATCTTATTCATCCAATTTACACAACATC
Alignments
lowQualScore : 2222 333333 11111 33333 222 111 3333 2222 1 1 1 1 11 1 1 22 1 1 22 1 1 22 11 222 1 1 111 111 11 1 1 2222 1 1 33333 666666666666 1 111 3333333333333333333333333333333333 111 1111 11111 55555555555555555 1 8888888888888888888888888888888888888888888888 11111 11111 33333333333 111111111 666666666666666666666666666666666666666 11 77777777777777777777777777777777777777777777777777777777 11111111 111111 11 111 11 3333333333333333333333 111111 22222222 111111 1111 222222 111 2222 1111 44444444444444444444444
lowQualScore : 1 3333 000000 1 1 99999 33333 6 333 7 999 7 77 9999 4444 3 0 6 3 3 3 88 3 3 00 3 3 00 3 6 6 6 7 7 3 00 7 44 333 0 3 555 1 555 7 44 3 3 2222 3 2 7 33333 888888888888 0 1 777 4444444444444444444444444444444444 5 000 0 0 2222 1 99999 6 8 77777777777777777 0 8 5 0 2222222222222222222222222222222222222222222222 5 5 55555 8 777 66 4 4 4 4 4 4 77777 1 0 44444444444 0 3 55 666666666 8888 4 88 2 5 5555 5555 2 5555 444444444444444444444444444444444444444 33 33 66 33 5 5555 88 2 33333333333333333333333333333333333333333333333333333333 2 6666 2 33 00000000 2 444444 1 77 5 4 5 44 7 99 0 5 5 999 66 5 00 5 5 5 5 6 6 6 3333333333333333333333 6 999999 1 44444444 5 1 6 666 5 444444 5 5 888 5555 5 5 1 2 55 5 5 5 555555 5 5 5 66 5 4 66 1 111 0 2 66 5 5 5 5 5 0000 0000 0 66 3 44 555 3 44 3 88 77777 555 3 1 2 5 0 2 2 33 2 2 99999999999999999999999 33 2
lowQualScore : . .... ...... . . ..... ..... . ... . ... . .. .... .... . . . . . . .. . . .. . . .. . . . . . . . .. . .. ... . . ... . ... . .. . . .... . . . ..... ............ . . ... .................................. . ... . . .... . ..... . . ................. . . . . .............................................. . . ..... . ... .. . . . . . . ..... . . ........... . . .. ......... .... . .. . . .... .... . .... ....................................... .. .. .. .. . .... .. . ........................................................ . .... . .. ........ . ...... . .. . . . .. . .. . . . ... .. . .. . . . . . . . ...................... . ...... . ........ . . . ... . ...... . . ... .... . . . . .. . . . ...... . . . .. . . .. . ... . . .. . . . . . .... .... . .. . .. ... . .. . .. ..... ... . . . . . . . .. . . ....................... .. .
lowQualScore : 0 0000 000000 0 0 55555 33333 7 333 3 777 3 33 0000 7777 3 7 7 3 3 3 33 3 3 77 3 3 00 3 7 7 7 3 3 3 77 3 77 333 7 3 333 0 000 3 77 3 3 0000 3 0 3 33333 333333333333 0 0 555 0000000000000000000000000000000000 7 000 1 1 1111 4 77777 7 0 00000000000000000 0 0 0 8 4444444444444444444444444444444444444444444444 0 0 88888 9 888 11 4 4 4 4 4 4 33333 9 7 00000000000 7 4 55 111111111 5555 7 33 9 3 7777 7777 7 7777 888888888888888888888888888888888888888 77 99 33 77 3 7777 22 7 66666666666666666666666666666666666666666666666666666666 9 1111 9 99 44444444 9 555555 4 99 7 9 7 11 2 22 1 7 7 555 99 0 11 0 0 7 7 7 7 7 3333333333333333333333 7 222222 5 22222222 7 7 6 777 7 444444 0 0 888 6666 0 0 0 5 22 0 0 0 999999 0 0 0 11 0 4 11 1 444 1 5 99 0 0 0 0 0 0000 6666 8 99 1 22 444 1 22 1 55 11111 000 8 0 9 8 9 9 7 77 7 7 00000000000000000000000 99 9
consensus : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTA-TAT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
Reference ( family-1512 ) : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTA-TAT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
gi|1 : TTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACT-TTTATATTGATAAATTACATACAATG-GTTTA--AACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC--GTA-C-AATTTGCAACTGGCT-TGGCG-GTGT-CAATT--TAATTTTAAGACAA--GTA-TATGTTT---AAA-TAAAAAAAACATAAATACATATGAAAAAAAAAAA---TAAATTAAAAAAAAATAAA---AAGAAGCCGACCTA-CCG-ACCTTTTTAAAATCTTAGGTAACCG-G-AAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGT-T---TTGTCTAAATTACG----TGAAACATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAG-CCCTTCTTCTCCTACCGTCTTATAATATGTA-TAT--ATGGATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATGAAA-C-CGTTCTAAATCAGTCACTGAT--TA--T--TA--TATTTT----TAGCTATACCACTATTCAACTGAAT-TAAA-TA----ATTA----T-G----TCAGC--CT-T--CTC-T-------------TAT--G------ACAAA--CGC-AGG--CA--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGTACGGT-TTC----T-C--CGG--------TGAGGGA-CATCCATTCCCTTG--C-AAAGAATCATACGTCCCGACG--AAATG-AATATTAAA-TAAGAACAC--GTAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCTAT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCTC-AC-AT-TAATAACATG--------GATT----------GA-GGGCGG------CCGGAA--------ATCTTT-CCGCAAAAAATT-G-A-AACATCTTAACTA------T-ATTAATCCA-TATT---T----GATGAA-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATACATGAGGATGT-A-CA-CC-ATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TA-CTCATGA-A-TC-TA-CAGTCA---AAAGCGTC----TTCGTCTCA--AACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-ATC--AAGTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---TAAT----TAGTTGA--TATGT--GAAA-TCACTCAAG
gi|10 : g------T-ATTAATCCA-TTTT---TTTTTGATGAAATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TGT-ATGGACGCATAA-----TCCATATATGGGGATGT-A-CG-CC-A-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-TA-CAGTCA----GAGCGTC----TTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-ATT--AGGTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A---CAAT----TG----G--TATGT--GAAATTCTCTCA
gi|11 : acGAA-CCGT---GTC--TTG-AA-CACAATATGGTAAA-G-T-TT-TC-----CGAAATTTATG-AAAC-CGTTCTAAATCAATCACTGAT--TA--C--TG--TATTTT----TATTTATCTCACTACTCAAGTGAAT-TGAA-TA----ATTA----T-G----CCAGC--CT-T--CTCTT-------------T-T--G------ACAAA--TGC-AGG--TC--AC-T----TTTCTTA-TGTTG------CAA-ATG-ACG-------CA-C
gi|12 : agT-CCGCTTACA-CT-A-ATAAT-TTTCAACTA------A-ATGAATCCA-TATT---T----GACGAA-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TGT-AAGGACACATAA-----TC-ATATGTGAGA-------------ATGCT-GC--AATTCAAAATTTCCC
gi|13 : gagagagagaaagagagagagagagcaattaaaTCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCaata
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACA-TATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCt
gi|18 : A-CA----ATTA----T-G----TCAGC---T-T--CTA-T-------------T-TCTG------ACATA--CGC-AGG--GCTGGC-T----TTT-TTA-TGTTG-------AA-AGG-ACG-------CAACT-GATT------TTTTGT---TTGGTGCGATCTTC----TAT--CGC--------TGAGGAAACATCCATTCC-TTGAA----AGAATGATACGTCCCGACT--AAATG-AA-ATT-AA-Tt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AACTTA-----------------A--TATGT--GAAA-TCta
gi|2 : CAGGTATTAGAAAA-----AGCTGTTC---TTCATAACTTATAT-CA-TACACTTATCA-CTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGTAA-TATATTTGTACACTGACAATAA-CGTACTCGTG-CCAATTTGCAACTG-CTCTGGCGTGTGTGCAATTCATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGAAAACATAAGCTATCATTTA-----TTTATTTATTTTT------------TTTTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAAT
gi|2 : CAGAGAAGT-T---T-ATCTAAATTACT----TGAAAA-TTTCAT--TATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCCTTTCTTCTCCAAT-GT------A-GTCTA-TA---AC--AT-----------------ATGCAT--CGA-TATC----CCTGAA-CCGT---TT---TCG-AAACAGAATATAATTAA-G-T-TT-CC----GCGAATTTTA---------------AATCAGTCAC-GAT--TATCC--TG--TATTTT----TACCTATACTAC-A---AGCTGAAT-TAAAATA----ATTA----TTG----TCA----CT-T--TTC-T-------------T-TTGA------ACAAA--CGC-AGGC-CC--GC-T----TT--TTATTGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTT----T-C--CGG--------TGAGGAA-CATCCATCCCCTTG--C-AAAGAATCATACGCCCCGACGCAAAATG-AATATT-AA-GAAG--CGC--GG-ATTCGCAATGAG----TCT--T-TATTT---AATTCCATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGC-ACATAATAGCA-G--------GAGGGGGGGGGGGGGG-GGGGGG------CTGGAA--------ATCTTTGCCGC-AAAAGTTAA-A-AATATTTTAACTA------T-ATTAATCCA--ATTTTGT----GACG-A-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAA-CGTCC-ATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TA-ATCATGACACTC-TA-CAGTC----AGAGCGTC-----TCGTCACA--CACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTGA-CGC-ATCGTAGG-GTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A---CAAT----T-----GGTCAT-T--GAAA-TCACTCAAGttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|20 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttaGTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-AAATTA---
gi|21 : CT-------------ATATGCAT-TCGA-TAG--------GAA-CCCT---TTC--TCG-AA-CAGAATATAATTAA-GTT-TT-CC----TCGAATTTTATGAAA-C-CGTTCTAAGACAGCCACTGAT--TA--C--TA--TATTTT----TAgttaatataatataaaccgaaaaata
gi|23 : ggcTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATAatcatc
gi|24 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|25 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|26 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC-GCACAATCATA
gi|27 : GCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AA-CTCATGA-A-AC-TA-CAGTCA---AAGGCGTC----TTCGCTTCA--CACTTGTGATGT
gi|28 : TACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAG----------------------------------------CAAA--TGC-TGG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTT
gi|29 : GTATTA-AGTTAGTAAC---AAAACTGAAATATTTC
gi|29 : TCAGAGAAGT-T---TTATCTAAATTACGTGACTGAAAAATTTCAT--agagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|3 : gtattaagttagtaacaaaactgaaatattTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTT---T-CATAACTTAT---CAATACATTTA----CTCTTAATTTT--CATC-TCATAGAGGATGCAT-ATCATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAAATA---TTGTACACTGACA-TAAACGTAC-CGTAGCCAATTTGCAACTGGCTCTGGCGTG-GT-CAATT-ATAATTTTAAGACAAAGGT-ATATGTTTNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCGACCT-ACCG-ACCTTTT-AAAATCTTAGGTAACC--GGAAACATAA-CTAT-A--TT-----ATTTATTTATTTT------------TTTTTTTTGTGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTCgtt
gi|3 : TCAGAGAAGT-T---TTATCTAAATTACT----TGAAAAATTTCATATT--CGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTTCTTCTCC------------ACATGTA-GAT--CT--ATAC-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTT----------------AAATCAGTCACTGAT---A--C--TG--TATTTT----TACCTATACTAC-----AACTGAAT-TAAA-TA----ATTA----T-G----TCAAC--CT-T--TTC-T-------------T-TT-G------ACAAA--CGC-AGG--CC--GC-T----TT-CTTA-TGTTG------TAA-GGGGACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTG--C-AAAGAATCATACGCCCCGACG--AAATG-AATATT-AA---GGAACGC--GGAAT-C-CAAT-AGT----CT--T-TATTT--AATTTCCAT-TCGATAA-CACATCGTGT-TAAACTATTTCTC-GCGAA-TAATAGCATG--------GAGG----------GG-GGGGGGGGGGGGCTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTTATCCA-TTTT---T----GACGA--TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGT-AACG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TA-ATCATGA-A-TCTTA-CAGTC----AGAGCGTC----TTCGTCACA--CACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGATC--AG--GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAATCTGGT-----A--T-TGT--GAAA-TCACTCAAagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|30 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTGT---TTAT---GATTATG----TGAAATATCTTAT--TTCCATCCAATTTACACAA-CA
gi|31 : aaccagatgaaatattAGT-T---TCATCTAAATTACG----AGAAAAATTTTAT--C--CACCCAATTTTCATAA-CAGCA-GGA-------t
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A---CAAT----TA----A--TATGT--AAAA-TCACTGAAGttga
gi|4 : --ATCT-------------ACATACAT-TCGA-TAGT----CCTGAAACCGT---CTC--TCGCAA-CAGAATATAGCTAACG-TCTT-CCAAA-GCAA--CTTATG-AAAC-CGTTCTAAATCA-CCAC-GAT--AA--C--TGA-TGTTTT----TTC--ATCTCACTACTCAAC-GAAT-TAAA-------ATTA----T-G----C-AGC--CTGT--CTC-T-------------T----G------ACAAA--CGC-AGGGGCC--GCCT----TTTCTTA-TGTTGACTTGATAA-GGG-ACG-------CA-C--G---------TTATGT---T-GG---------------------G--------TGCG--------CATTCTCTCGA---GGAGACT-ATATGTCCCGACG--AAATGGAATATT-AA-TAAGAACAC--AGAATTC-AACC-AGTTTTTCTATTATATTCT-AAATTCCAT-T-GATAA-CA-ATCGTATGTA--CTGTTTCTC-AC-AT-TAATGGAATGATTGAAGGGGGG----------GG-GGGGGG------GGGGAGGGGGGAACATACTT-CCGCTAAAA--T-ATA-AATATTTCAACCC------TTATTAATTCAATATT---TT---GATGAA-TG-CCTGCTTTGTCATC-TTGG---AACT-CG-TGT-ACGGACGCATA------TC-ATATAATAAGATGT-A-CA-CCCATGCT-GCCAAACTCAAAATT-CCCCAGATT-TCT-------CA--TA-A-----A-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCA--CACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCAAGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAG-AGCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTTAGTTTAAT----T-----AATTATGT--GAAA-TC
gi|5 : gTCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCT-CA-CAGAATATAATTAA-G-T-TT-CC----ACGAATT----------------TAAATCCGTCACTGAT--TA--C--TG--TATGTT----TAGCTATAC-----CCCATCTAAAT-TAAA-AA----ATAT----T-G----TCAAC--CT-T--CTCTT-------------T-T--G------ACAAA--TGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACA-------CA-CT-G---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGAGGAA-CATCCATTCCCTTtaaca
gi|5 : TTCCCT--T-TATTTT-AAATTCCAT-TCGATAAACA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGTATG--------GAGG----------GGGGGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTCACTA------T-ATTAATCCA-TATT---T----GATAAA-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTC----AGAGCATC----TTCGTCTCA--CACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A---CAAT----C-----A---ATTTAAGAAA-tattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|6 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatccaCCGATTAAAA-CCA--CCCTTCTTTTCTAGTCGTCT----ATGTGTATTATCAACTAATCTCTCTTAATCCCTAATATACATATCGAGTAATGCTCCTTGAGCCCGTGTCTTCTTTCG-AA-C-GA--ACAATTTA-G-T-TT-TCCAGAGCGA---------------GTTC-AGAT-AGACGCTGATTCTA--CAATGAATATGTT----AATCT-TATAATTACATGGCC--AT-AACATTA----ATTG----T-T----TC-GCAACT-TCACTC-C-------------T-T--GGTTGAAACAAAAGCGCAAGG--AC--AG-TAAACTACCTTA--GTTG------TAACGGG-AGGGCCCTAACA-CTAG---------CTTTGTGTGT-GG--CGTT-TTC----T-C--CGG--------TGAGGAA-CAT-CATTCCCtt
gi|6 : TCC-CAAT-G--TTTTGT--T-TATTTTTAAATTC-AT-TTCATAA----ATCGTGTGTAA-CTTATTCTC-GC-AT-TAATAGCATG--------G-GG----------GG-GGGGGG------CGGGaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|7 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgaggaacatcatCAGAGAGGC-TAAATTATCTA--TTATG----TAAAAACTTTCAT--T--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCCCT-CTTCTCTTATCGTCT------------------------T-------------ATATGCAC-TCGA-TAG--------GAA-CCAT---TTC--TCG-AA-CAGAATA--ATGAA-G-T-TTTCC----GCGAATTTTATA-AA------TCTA-----GTCACTGAT--TA------------TCT----CAC---TG----TACTCAA-------------------TTA----T-G----TCAGC--CT-T--CTC-T-------------T-TT-G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------CAA-GAG-ACG-------CA-CT-A---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGA-GAA-CATTCATTCCTT--AAC-AAAG----------------------------ATT-AATTAAGCACAC--GGAATTC-CAAT-A-TATTTCT--T-TATTTC-AAACTCCAT-TCAATAA-gggagggggggggggcgtgtgcggag
gi|8 : aaatatta--------ATCTAT-CCGCTAAAAGTT-G-A-AATATTTTAACTACATGTAT-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TGT-ACGGACGCATAG-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCAAA-----------------TA-ATCATGA-A-TC-TA-CAGTCGCTTAGAGCGTC----TTCGTCTCA--CACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAGT----TA----A--TATGT--GAAA-TCACTTA
gi|9 : TTATG-AA-CGCGTTCTACAAAAGCCACAGAT--TA---------TATCTCATCGTACTCATGCAGCTGATTTAGTAAACACAAA-TATCTAATTAGCATT-GATATTCAGC--CT-TA-CCC-TAAAACATTCTTTAT-T--G------ACAAA--CAC-CGA--CC--GCAT----TTTCTTA-GGTTG------CGA-GGT-ACG-------CA-CT-GCATGCACTGTTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCT---ACCAGAGAATGCGACGTTCCGGCG--AAATG-AAGAGT-AA------ACGCAGGGAATTC-CAAC-A-TACTTCT--T-TATTTT-ATTCTCCAT-TCGATAA-CA-AT
blockSeqs : C CGCA . C A TACAA . G . T AT A CA TCA TTTT . G T C G GG . A TA A A TC G C G C T T G CA A AA NNN A . AAT T GTA A AA C . GTGA G C T . . G T CAA G AAA TGAC A TAT A A ATTAATTCAA G G C AGTCGTCTATGTGTATTATCAACTAATCTCTCTTAATCCCTA A G TGCTC A GTC TT C A C T C T CAGAG A TGAAACCGT T TC CAATGAA ATCG T TC A A TCTA GCAT T ATAT CCTTACCCTAAAACATTCTTTATTG AG AA GG TG C AAAC TC T TAACGGGAGGGCCCTAACACTAGCTTTGTGTGTGGC C CACT A AT ACATCTTG A GACGC G CA G T . TT A AG G G GTT AT A TT A A C A G G A GAGGGGGGGGGGGG G GGGGGG T GGGGGAAC G T G AA T CATGTA T A TTG TTTT A C A C GG G A T ATCTAT C A A GT C G CA G ATG C AA T C C T A GCTT AGAT GC T TT TTT T TT G GT ACTTA CAG A A C A A T TA A T TTAGTTTAATTAAT AA T
blockSeqs : . G . . . . CA . TT . G . . . . . . . . . C . C . C T . . A A A . N . NNN N NNN . A . . GG . . . . . . G . . . . A ATT . . TTAATTCA . . C AATGTAGTCTATAACAT . . C C . . . . . . . . AAAG A TGAAACCGT T . TCCTG . C CT . T . . . . CAACTTCACTCCTTGGTTGAA . A C . A . TC . CGAGGTACGCACTGCATGCACTGTTGTGTTGGTGC . . . . . . GACGC C . . T . T A . . . GT . . T . . . A . . . ATTGAAGGGGGG . . T . . T G AT . . . . . T . . C C A . . . GATTAT . . . G . . . G AT C . . . . . . A . . . . . . . . CA . . T T . A . . . . . ACAATCTGGTA . .
blockSeqs : . T . . . . A TTC . . A . . C ACATGTAGATCTATAC . . T . . . . . . . . . G A TGAAACCGT T . CTGA . C CT . . . . . . CCTTCTCTTTTG . A . . . . TC . AAAGGACGCAACTGATTTTTTGTTTGGTGC . . . . . . GACGC C . . T . G C . . . TA . . T . . . A . . . GAGG . . G . . T G A . . . . . . . . A C A . . . A . . . G . . . A TA C . . . . . . A . . . . . . . . . . . T T . A . . . . . ACAATTGGT . .
blockSeqs : . . . A C . . . . TATCGTCTT . . T . . . . . . . . . T A TGAACGCGT T . CTG . C TC . . . . . . CTTCTATTTCTG . A . . . . CC . ACTTGATAAGGGACGCACGTTATGTTGG . . . . . . GACGC C . . G . T . . . . TA . . C . . . . . . . GAGG . . T . . T G A . . . . . . . . A C G . . . A . . . A . . . G TT C . . . . . . A . . . . . . . . . . . T T . A . . . . . ACAATTGG . .
blockSeqs : . . . C T . . . T . . . . . . . . . G A TAAA T . CTA . C TA . . . . . . CTTTTCTTTTGA . T . . . . TC . TAAGGGACACACTGTTTTGTTGGTGC . . . . . . AACAA C . . . . . . . . . G . . T . . . . . . . GGG . . G . . T . A . . . . . . . . T C G . . . A . . . A . . . A TT . . . . . . . . . . . . . . . . . . . T T . A . . . . . ACAATTAA . .
blockSeqs : . . . . . . . . . . . . . . . . A A GT T . CTG . T CA . . . . . . CCTTTTCTTTTG . T . . . . TC . CAAGAGACGCACTATTTTGTTGGTGC . . . . . . ACCAG C . . . . . . . T . . . . . . . . . G . . . . . . . . T . G . . . G . . . A . . . A TA . . . . . . . . . . . . . . . . . . . T T . A . . . . . ACAGTTAA . .
blockSeqs : . . . . . . . . . . . . G . . A . CTG . . C . . . . . . CCTTCTCTTTTG . T . . . . T . TAAGGGGACGCACTGTTTTGTTTGT . . . . . . CAA C . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A T . G . . . . . ACAATCA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . CCTTCTCTTTTG . T . . . . C . TAAGGGACGCACTGTTTTGTTTGT . . . . . . CAA G . . . . . . . . . . . T A . G . . . . . TTAA . .
blockSeqs : . . . . . . . . . . . CCTGTCTCTTG . T . . . . . . GTCT . . . . . . AGG . . . . . . . . . . A T . G . . . . . TTAA . .
blockSeqs : . . . . . . . . A . . . . . . GTCT . . . . . . AA . . . . . . . . . . T A . G . . . . . TTAA . .
blockSeqs : . . . . . . . . A . . . . . . GTCT . . . . . . . . . . . . . . . A T . . . . . . . TTAA . .
blockSeqs : . . . . . . . . A . . . . . . GTCT . . . . . . . . . . . . . . . A A . . . . . . . TTAA . .
blockSeqs : . . . . . . . . A . . . . . . GTCT . . . . . . . . . A . . . . . . . TTAA . .
blockSeqs : . . . . . . . C . . . . . . . . . .
blockSeqCons : TTT** ATGTCGTCTATAT********************************* GACGC* GTA A*** ACAATTAA***************
originalCons : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCAT--T--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCNATCGTCT----ACGTGTA-TAT--AC--ATCT-------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC-GNAGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---CAAT----T-----A--TATGT--GAAA-TCACTCAAG
finalCons : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCATTTT--CGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTCTTCTCCATGTCGTCTATAT---------------------------------ATATGCAT-TCGA-TAGT----CCTGAA-CCGT---TTC--TCG-AA-CAGAATATAATTAA-G-T-TT-CC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGAT--TA--C--TG--TATTTT----TACCTATACCACTACTCAACTGAAT-TAAA-TA----ATTA----T-G----CCAGC--CT-T--CTC-T-------------T-T--G------ACAAA--CGC-AGG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGACGC-AGAATCATACGTCCCGACG--AAATG-AATATT-AA-TAAGAACGC--GGAATTC-CAAT-AGTATTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACACAATTAA---------------TATGT--GAAA-TCACTCAAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Unaligned ( gi|33 ): TATGTGAAATATCTTATTCATCCAATTTACACAACATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 333333 11111 33333 222 111 3333 2222 1 1 1 1 11 1 1 22 1 1 22 1 1 22 11 222 1 1 111 111 11 1 1 2222 1 1 33333 666666666666 1 111 3333333333333333333333333333333333 111 1111 111 55555555555555555 1 11 0000000000000000000000000000000000000000000000000000000000000000 11111 11111 33333333333 11111 111 6666666666666666666666666666666666666666 11 77777777777777777777777777777777777777777777777777777777 11111111 2222222 22222 11 3333333333333333333333 111111 22222222 111111 1111 222222 111 2222 1111 333333333
lowQualScore : 1 3333 000000 1 1 99999 33333 6 333 7 999 7 77 9999 4444 3 0 6 3 3 3 88 3 3 00 3 3 00 3 6 6 6 7 7 3 00 7 44 333 0 3 555 1 555 7 44 3 3 2222 3 2 7 33333 888888888888 0 1 777 4444444444444444444444444444444444 5 000 0 0 2222 1 111 6 8 77777777777777777 0 8 5 0 11 4444444444444444444444444444444444444444444444444444444444444444 5 5 55555 4 777 4 66 4 4 4 8 4 77777 1 0 44444444444 0 3 55 22222 4 4 8888 9999 000 2 333 5555 5555 2 5555 4444444444444444444444444444444444444444 33 33 66 33 5 5555 88 2 33333333333333333333333333333333333333333333333333333333 2 6666 2 33 00000000 2 6666666 1 1 77 5 5 1 5 8 7 99 0 5 11111 66 5 00 5 5 5 5 6 6 6 3333333333333333333333 6 999999 1 44444444 5 1 6 666 5 444444 5 5 888 5555 5 5 1 2 55 5 5 5 555555 5 5 5 66 5 4 66 1 111 0 2 66 5 5 5 5 5 0000 0000 0 66 3 44 555 3 44 3 88 77777 555 3 1 2 5 0 2 2 33 2 2 000000000 2 5555 2 2 2 2
lowQualScore : . .... ...... . . ..... ..... . ... . ... . .. .... .... . . . . . . .. . . .. . . .. . . . . . . . .. . .. ... . . ... . ... . .. . . .... . . . ..... ............ . . ... .................................. . ... . . .... . ... . . ................. . . . . .. ................................................................ . . ..... . ... . .. . . . . . ..... . . ........... . . .. ..... . . .... .... ... . ... .... .... . .... ........................................ .. .. .. .. . .... .. . ........................................................ . .... . .. ........ . ....... . . .. . . . . . . .. . . ..... .. . .. . . . . . . . ...................... . ...... . ........ . . . ... . ...... . . ... .... . . . . .. . . . ...... . . . .. . . .. . ... . . .. . . . . . .... .... . .. . .. ... . .. . .. ..... ... . . . . . . . .. . . ......... . .... . . . .
lowQualScore : 0 0000 000000 0 0 55555 33333 7 333 3 777 3 33 0000 7777 3 7 7 3 3 3 33 3 3 77 3 3 00 3 7 7 7 3 3 3 77 3 77 333 7 3 333 0 000 3 77 3 3 0000 3 0 3 33333 333333333333 0 0 555 0000000000000000000000000000000000 7 000 1 1 1111 4 777 7 0 00000000000000000 0 0 0 8 00 2222222222222222222222222222222222222222222222222222222222222222 0 0 88888 4 888 4 11 4 4 4 9 4 33333 9 7 00000000000 7 4 55 66666 0 0 5555 3333 000 9 999 7777 7777 7 7777 8888888888888888888888888888888888888888 77 99 33 77 3 7777 22 7 66666666666666666666666666666666666666666666666666666666 9 1111 9 99 44444444 9 5555555 4 4 99 7 7 4 7 4 2 22 1 7 99999 99 0 11 0 0 7 7 7 7 7 3333333333333333333333 7 222222 5 22222222 7 7 6 777 7 444444 0 0 888 6666 0 0 0 5 22 0 0 0 999999 0 0 0 11 0 4 11 1 444 1 5 99 0 0 0 0 0 0000 6666 8 99 1 22 444 1 22 1 55 11111 000 8 0 9 8 9 9 7 77 7 7 777777777 7 7777 7 7 7 9
consensus : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCATTTTCGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTC--TTCT------CCA--TGTNG-T-C-TAT----------------A-----------------T-----ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC--GNAGAATCATACGTCCCGACG--AA-ATG-AATATT-AATAAGAACGC--GGAATTC-CAAT-AGT-TTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AAC--A---CAAT-TA----A-T-A-TGTGAAA-TCACTCAAG
Reference ( family-1512 ) : NTTGCTAAAANGCGCAAGTTTAATTTCTTGTTTGGNACNGTACAGGTATTAGAAAA-----AGCTGTTT---TTCATAACTTATAT-CAATACGTTTA--A-CTCTTAATTTT--CATC-TCGTAGAGGATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC-CGTA-CCAATTTGCAACTGGCTCTGGCGTGTGT-CAATT-ATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATACATATGAAAAAAAAAAAAATTAAGTTAAAAANAAATAAAGTAAAGAAGCCGACCTAACCG-ACCTTTT-AAAATCTTAGGTAACCG-GGAAACATAA-CTATCATTTT-----TTTTTTTTTTTTT------------TTTTTTTTTTGCCGTATTA-AGATANTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGAAGT-T---TTATCTAAATTACG----TGAAAAATTTCATTTTCGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAGCCCCTTC--TTCT------CCA--TGTCG-T-C-TAT----------------A-----------------T-----ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATG-AA-C-CGTTCTAAATCAGTCACTGATT--A--C--TG-TAT-TTT----TA--CCTATACCACTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TC-T-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGT-CGAT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTGGAC--GCAGAATCATACGTCCCGACG--AA-ATG-AATATT-AATAAGAACGC--GGAATTC-CAAT-AGTATTTCT--T-TATTTT-AAATTCCAT-TCGATAA-CA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGCATG--------GAGG----------GG-GGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGNCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CG-CC-ATGCT-GC--AACTCAAAATTTCCCCAGANT-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTCA---AGAGCGTC----TTCGTCTCA--CACTTGTGACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACANTANCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCCGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AAC--A---CAAT-TA----A-T-A-TGTGAAA-TCACTCAAG
gi|1 : TTGCTAAAAGG----AATTTAATTTCTTGTTTGGAACTG-----ATATAAGAAAATTGACAACT-TTTATATTGATAAATTACATACAATG-GTTTA--AACACTTAAGT-----ATCGTTGTAGAG-ATGCAT-AT-ATTACT-AAATTCG--TGGTGGTTTCTGCGGGTGGATTAAGGTGTGTGCATGCGTAA-TA-ATTTGTACACTGACA-TAA-CGTAC--GTA-C-AATTTGCAACTGGCT-TGGCG-GTGT-CAATT--TAATTTTAAGACAA--GTA-TATGTTT---AAA-TAAAAAAAACATAAATACATATGAAAAAAAAAAA---TAAATTAAAAAAAAATAAA---AAGAAGCCGACCTA-CCG-ACCTTTTTAAAATCTTAGGTAACCG-G-AAACATAA-CTATTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTGCCGTATTA-AGATAGTAAC---AAAACTGAAATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGAAGT-T---TTGTCTAAATTACG----TGAAACATTTCA--TTCGCCCAATTTTCATAA-CAGCA-GGA-------A---------GTTAGATGATCAAT-TTATCAGCCCGATTAAAA-CCAG-CCCTTC--TTCT------CC---TACCG-T-CTTAT----------------AATATGTATATATGGATCT-----ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTTTATGAAA-C-CGTTCTAAATCAGTCACTGATT--A--T--TA-TAT-TTT----TA--GCTATACCACTATTCAACTGAAT-TAAA-T-A----ATTA----T-G----TCAGC--CT-T-C--TC-T-------------TAT--G------ACAAA--CGCA-GG--CA--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-GGTACGGT-TTC----T-C--CGG--------TGAGGGA-CATCCATTCCCTTG--C--AAAGAATCATACGTCCCGACG--AA-ATG-AATATTAAATAAGAACAC--GTAATTC-CAAT-AGTTTTTCT--T-TATTTT-AAATTCTAT-TCGATAA-CA-ATCGTGTGTAAGCTGTTTCTC-AC-AT-TAATAACATG--------GATT----------GA-GGGCGG------CCGGAA--------ATCTTT-CCGCAAAAAATT-G-A-AACATCTTAACTA------T-ATTAATCCA-TATT---T----GATGAA-TA-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATACATGAGGATGT-A-CA-CC-ATGCT-GC--AATTCAAAATTTCCTAAAAAT-TTTTACTCTACA--TA-CTCATGA-A-TC-TA-CAGTCA---AAAGCGTC----TTCGTCTCA--AACTTGTTACGTCATTCACG-TCAT--ATCCGGTA---TTTCTGCA-TTTTTACA--GAACGC-ATC--AAGTGTGTAT-----TT---ACTATTTTTAACAATAACTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TATAAACGCT-ATCG-AACTTA---TAAT-TAGTTGA-T-A-TGTGAAA-TCACTCAAG
gi|10 : g------T-ATTAATCCA-TTTT---TTTTTGATGAAATG-CCTGCTCTGACATCCTTGGA-AAACT-AG-TGT-ATGGACGCATAA-----TCCATATATGGGGATGT-A-CG-CC-A-----------------AT---------AT-TATTACTCTACAAATATATCATGA-A-TC-TA-CAGTCA----GAGCGTC----TTCGTCACAGCCACTTGTGACGTCATGCACG-TCAT--AGTTGGTA---TTTCTGTA--TTTTACC--GAGCGC-ATT--AGGTGTGTAT-----T-----CTGTTTTTAACAATAACTC-GAACAG-CGTTCGAATTGG-GGTTGAGCCGTAT-ATCATTTTACCCG-GA-T--CATAAACGCTAATCGTAAC--A---CAAT-TG----G-T-A-TGTGAAATTCTCTCA
gi|11 : acGAA-CC---GT-GTCT--TG-AA-CACAATATGGTAAA-G-T-TTTC-----CGAAATTTATG-AAAC-CGTTCTAAATCAATCACTGATT--A--C--TG-TAT-TTT----TA--TTTATCTCACTACTCAAGTGAAT-TGAA-T-A----ATTA----T-G----CCAGC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--TC--AC-T----TTTCTTA-TGTTG------CAA-ATG-ACG-------CA-C
gi|12 : agT-CCGCTTACA-CT-A-ATAAT-TTTCAACTA------A-ATGAATCCA-TATT---T----GACGAA-GG-CCTACTTTGCCATCCTTGGA-CAACT-CG-TGT-AAGGACACATAA-----TC-ATATGTGAGA-------------ATGCT-GC--AATTCAAAATTTCCC
gi|13 : gagagagagaaagagagagagagagcaattaaaTCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCaata
gi|14 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCt
gi|15 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCt
gi|16 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCt
gi|17 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTTTTACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACA-TATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCt
gi|18 : A-C-A----ATTA----T-G----TCAGC---T-T-C--TA-T-------------T-TCTG------ACATA--CGCA-GG--GCTGGC-T----TTT-TTA-TGTTG-------AA-AGG-ACG-------CAACT-GATT------TTTTGT---TTGGTGCGATCTTC----TAT--CGC--------TGAGGAAACATCCATTCC-TTGAA-----AGAATGATACGTCCCGACT--AA-ATG-AA-ATT-AATt
gi|19 : TCACG-TTAT--ATCTGGTA---TTTCTGTA-TTT--ACA--GAGCAC-ATC--AGGTGTGTGT-----TT---ACTATTTTTAACATTATCTCGGAACAG-CGGTCGAATTGGAGGTTGAGCTGTAT-ATCATTTTACTCGTGA-T--TACAAACGCT-ATCG-AAC---------T-TA----A-T-A-TGTGAAA-TCta
gi|2 : CAGGTATTAGAAAA-----AGCTGTTC---TTCATAACTTATAT-CA-TACACTTATCA-CTCTTAATTTTTTCATC-TCATAGAGGATGCATTAT-ATTACTGAAATTCGGGTGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCAAGCGTAA-TATATTTGTACACTGACAATAA-CGTACTCGTG-CCAATTTGCAACTG-CTCTGGCGTGTGTGCAATTCATAATTTTAAGACAAAGGTAATATGTTT---AAAATAAAAAAAAC-TAAATATATATGAAAAAAAAAAAAATTAAGTTAAAAATAAATAAAGTAAAGAAGCCG-CCTAACCGCACCTTTT-AAAATCTTAGGTAACCGTGAAAACATAAGCTATCATTTA-----TTTATTTATTTTT------------TTTTTTTGTGGCCGTATTAGAGATATTAACCAAAAAACTGAAAT
gi|2 : CAGAGAAGT-T---T-ATCTAAATTACT----TGAAAA-TTTCATTATCGCCCAATTTTCATAAACAGCAAGGATTAATTCA---------GTTAGATGATCAATGTTATCAGC--GATTAAAGGCCAGCCCTTTC--TTCT------CCAA-TGTAG-T-C-TAT----------------AA----------------C-----ATATGCAT--CGA-TATC----CCTGAA-CC---GT-TT-T--CG-AAACAGAATATAATTAA-G-T-TTCC----GCGAATTTTA---------------AATCAGTCAC-GATT--ATCC--TG-TAT-TTT----TA--CCTATACTAC-A---AGCTGAAT-TAAAAT-A----ATTA----TTG----TCA----CT-T-T--TC-T-------------T-TTGA------ACAAA--CGCA-GGC-CC--GC-T----TT--TTATTGTTG------TAA-GGG-ACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTT----T-C--CGG--------TGAGGAA-CATCCATCCCCTTG--C--AAAGAATCATACGCCCCGACGCAAA-ATG-AATATT-AAGAAG--CGC--GG-ATTCGCAATGAG----TCT--T-TATTT---AATTCCATATCGATAA-CA-ATCG-GTGTAAACTATTTCTCGGC-ACATAATAGCA-G--------GAGGGGGGGGGGGGGG-GGGGGG------CTGGAA--------ATCTTTGCCGC-AAAAGTTAA-A-AATATTTTAACTA------T-ATTAATCCA--ATTTTGT----GACG-A-TGCCCTGCTCTGACATC--TGGG-AAACTGAG-TG--ATGGACGCATGATCTATTC-ATATATGAGGATGTAA-CGTCC-ATGCTGGC--AACTC-AAATTTCCCCAGAATGTTTTA-TCTACA--TA-ATCATGACACTC-TA-CAGTC----AGAGCGTC-----TCGTCACA--CACTTGTGACGTCATGCACG-TCA---ATCCGGAA---TTTCTGTA-TTTTTACATTGA-CGC-ATCGTAGG-GTGGATACTTATT---ACTGTTTTTAACAATAACTCGGAACAGCCGGTCGAATTGG-GGTTGA-CCGTAT-ATCATTTTACT-GTGA-T--CATAAACGCT-ATCG-AA---A---CAAT-TG----G-TCA-T-TGAAA-TCACTCAAGttacagagaagtttatctaaattacttgaaaatttcattatcgcccaattttcataaacagcaaggattaattcagttagatgatcaatgttatcagcgattaaaggccagccctttcttctccaatgtagtctataacatatgcatcgatatccctgaaccgttttcgaaacagaatataattaagtttccgcgaattttaaatcagtcacgattatcctgtatttttacctatactacaagctgaattaaaataattattgtcacttttcttttgaacaaacgcaggcccgctttttattgttgtaagggacgcactgttttgtttgtgtttttccggtgaggaacatccatccccttgcaaagaatcatacgccccgacgcaaaatgaatattaagaagcgcggattcgcaatgagtctttatttaattccatatcgataacaatcggtgtaaactatttctcggcacataatagcaggaggggggggggggggggggggctggaaatctttgccgcaaaagttaaaaatattttaactatattaatccaattttgtgacgatgccctgctctgacatctgggaaactgagtgatggacgcatgatctattcatatatgaggatgtaacgtccatgctggcaactcaaatttccccagaatgttttatctacataatcatgacactctacagtcagagcgtctcgtcacacacttgtgacgtcatgcacgtcaatccggaatttctgtatttttacattgacgcatcgtagggtggatacttattactgtttttaacaataactcggaacagccggtcgaattggggttgaccgtatatcattttactgtgatcataaacgctatcgaaacaattggtcattgaaatcactcaag
gi|20 : caggtattagaaaaagctgttcttcataacttatatcatacacttatcactcttaattttttcatctcatagaggatgcattatattactgaaattcgggtggtggtttctgcggtggattaaggtgtgtgcaagcgtaatatatttgtacactgacaataacgtactcgtgccaatttgcaactgctctggcgtgtgtgcaattcataattttaagacaaaggtaatatgtttaaaataaaaaaaactaaatatatatgaaaaaaaaaaaaattaagttaaaaataaataaagtaaagaagccgcctaaccgcaccttttaaaatcttaggtaaccgtgaaaacataagctatcatttatttatttattttttttttttgtggccgtattagagatattaaccaaaaaactgaaatttaGTGTGTAA-----TC---GCTATTTTTAACATTATCTTCGAATAG-CGGTCGAATTGTGGGTTGAGCTGCAT-ATCATTTTACAGGCGATT--TATAAACGCT-ATTG-AAA--T---TAGT-TA----A-T-A-T
gi|21 : -----------------T-----ATATGCAT-TCGA-TAG--------GAA-CC---CT-TTCT--CG-AA-CAGAATATAATTAA-GTT-TTCC----TCGAATTTTATGAAA-C-CGTTCTAAGACAGCCACTGATT--A--C--TA-TAT-TTT----TA--aatataaaccgaaaaata
gi|23 : ggccTACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC--GCACAATCATAatcatc
gi|24 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC--GCACAATCATA
gi|25 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC--GCACAATCATA
gi|26 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTTGGAC--GCACAATCATA
gi|27 : GCT-GC--AACTCAAAATTTCCCAAGATA-TTTTACTCTACA--AA-CTCATGA-A-AC-TA-CAGTCA---AAGGCGTC----TTCGCTTCA--CACTTGTGATGT
gi|28 : TACTCAACTGAAT-TAAA-T-A----ATTA----T-G----CCAG-----------------------------------------CAAA--TGCT-GG--CT--GC-T----TT------TGTTG------------------------------G---------TCT-------------GAT-TTC----T-C--CAG--------TGAGGAA-CATCCATTCCCTT
gi|29 : GTATTA-AGTTAGTAAC---AAAACTGAAATATTTC
gi|29 : TCAGAGAAGT-T---TTATCTAAATTACGTGACTGAAAAATTTCATGTTagagaagttttatctaaattacgtgactgaaaaatttcatgtt
gi|3 : gtattaagttagtaacaaaactgaaatattTTACTAAAACGCGCAAGTTTA------TATTTGGCACAGTACAAGTATTAGAAAA-----AGCTGTTT---T-CATAACTTAT---CAATACATTTA----CTCTTAATTTT--CATC-TCATAGAGGATGCAT-ATCATTACT-AAATTCG--TGGTGGTTTCTGCGG-TGGATTAAGGTGTGTGCATGCGTAAATA---TTGTACACTGACA-TAAACGTAC-CGTAGCCAATTTGCAACTGGCTCTGGCGTG-GT-CAATT-ATAATTTTAAGACAAAGGT-ATATGTTTNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCGACCT-ACCG-ACCTTTT-AAAATCTTAGGTAACC--GGAAACATAA-CTAT-A--TT-----ATTTATTTATTTT------------TTTTTTTTGTGCCGTATTA-AGATATTAAC---AAAACTGAAATATTTC
gi|3 : TCAGAGAAGT-T---TTATCTAAATTACT----TGAAAAATTTCATATTCGCC-AATTTTCATAA-CAGCA-GGA-------ATTAATTCAAGTTAGATGATCAAT-TTATCAGCCCGATTAAAG-CCAGCCCTTTC--TTCT------CCACATGTAGAT-C-TAT----------------A-----------------C-----ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CG-AA-CAGAATATAATTAA-G-T-TTCC----GCGAATTT----------------AAATCAGTCACTGAT---A--C--TG-TAT-TTT----TA--CCTATACTAC-----AACTGAAT-TAAA-T-A----ATTA----T-G----TCAAC--CT-T-T--TC-T-------------T-TT-G------ACAAA--CGCA-GG--CC--GC-T----TT-CTTA-TGTTG------TAA-GGGGACG-------CA-CT-G---------TTTTGT---T-TGT---GT-TTC----T-C--CGG--------TGAGGAA-CATCCATTCCCTTG--C--AAAGAATCATACGCCCCGACG--AA-ATG-AATATT-AA--GGAACGC--GGAAT-C-CAAT-AGT----CT--T-TATTT--AATTTCCAT-TCGATAA-CACATCGTGT-TAAACTATTTCTC-GCGAA-TAATAGCATG--------GAGG----------GG-GGGGGGGGGGGGCTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTAACTA------T-ATTTATCCA-TTTT---T----GACGA--TG-CCTGCTCTGACA-CCTTGGG-AAACT-AGATGTTATGGACGCATAGATTATTC-ATATATGAGGATGT-AACG-CC-ATGCT-GC--AACTCAAAATTTCCCCAAATT-GTTTACTCTACA--TA-ATCATGA-A-TCTTA-CAGTC----AGAGCGTC----TTCGTCACA--CACTTGTGACGTCATGCACG-TCAT--ATCCGGAA---TTTCTGTA--TTTTACA--GAGCGCGATC--AG--GTGTAT-----TT---ACTGTTTTTAACAATAACTCGGAACAG-CGGTCGAATTGG-GGTTGA-CCGTAT-ATCA-TTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAATCTG----G-T-ATTGTGAAA-TCACTCAAagagaagttttatctaaattacttgaaaaatttcatattcgccaattttcataacagcaggaattaattcaagttagatgatcaatttatcagcccgattaaagccagccctttcttctccacatgtagatctatacatatgcattcgatagtcctgaaccgtttctcgaacagaatataattaagtttccgcgaatttaaatcagtcactgatactgtatttttacctatactacaactgaattaaataattatgtcaaccttttcttttgacaaacgcaggccgctttcttatgttgtaaggggacgcactgttttgtttgtgtttctccggtgaggaacatccattcccttgcaaagaatcatacgccccgacgaaatgaatattaaggaacgcggaatccaatagtctttatttaatttccattcgataacacatcgtgttaaactatttctcgcgaataatagcatggaggggggggggggggggctggaaatctttccgctaaaagttaaaatattttaactatatttatccatttttgacgatgcctgctctgacaccttgggaaactagatgttatggacgcatagattattcatatatgaggatgtaacgccatgctgcaactcaaaatttccccaaattgtttactctacataatcatgaatcttacagtcagagcgtcttcgtcacacacttgtgacgtcatgcacgtcatatccggaatttctgtattttacagagcgcgatcaggtgtatttactgtttttaacaataactcggaacagcggtcgaattggggttgaccgtatatcatttactcgtgatcataaacgctatcgaacacaatctggtattgtgaaatcactcaa
gi|30 : ttactaaaacgcgcaagtttatatttggcacagtacaagtattagaaaaagctgttttcataacttatcaatacatttactcttaattttcatctcatagaggatgcatatcattactaaattcgtggtggtttctgcggtggattaaggtgtgtgcatgcgtaaatattgtacactgacataaacgtaccgtagccaatttgcaactggctctggcgtggtcaattataattttaagacaaaggtatatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagccgacctaccgaccttttaaaatcttaggtaaccggaaacataactatattatttatttattttttttttttgtgccgtattaagatattaacaaaactgaaatattTCAGAGAAGTGT---TTAT---GATTATG----TGAAATATCTTATTTCCATCCAATTTACACAA-CA
gi|31 : aaccagatgaaatattAGT-T---TCATCTAAATTACG----AGAAAAATTTTA--TCCACCCAATTTTCATAA-CAGCA-GGA-------t
gi|32 : GTGA-T--CATAAACGCT-ATCG-AAC--A---CAAT-TA----A-T-A-TGTAAAA-TCACTGAAGttga
gi|4 : AT----------------C-----------------T-----ACATACAT-TCGA-TAGT----CCTGAAACC---GT-CTCT--CGCAA-CAGAATATAGCTAACG-TCTTCCAAA-GCAA--CTTATG-AAAC-CGTTCTAAATCA-CCAC-GATA--A--C--TGATGT-TTT----TT--C--ATCTCACTACTCAAC-GAAT-TAAA--------ATTA----T-G----C-AGC--CTGT-C--TC-T-------------T----G------ACAAA--CGCA-GGGGCC--GCCT----TTTCTTA-TGTTGACTTGATAA-GGG-ACG-------CA-C--G---------TTATGT---T-GG---------------------G--------TGCG--------CATTCTCTCGA----GGAGACT-ATATGTCCCGACG--AA-ATGGAATATT-AATAAGAACAC--AGAATTC-AACC-AGTTTTTCTATTATATTCT-AAATTCCAT-T-GATAA-CA-ATCGTATGTA--CTGTTTCTC-AC-AT-TAATGGAATGATTGAAGGGGGG----------GG-GGGGGG------GGGGAGGGGGGAACATACTT-CCGCTAAAA--T-ATA-AATATTTCAACCC------TTATTAATTCAATATT---TT---GATGAA-TG-CCTGCTTTGTCATC-TTGG---AACT-CG-TGT-ACGGACGCATA------TC-ATATAATAAGATGT-A-CA-CCCATGCT-GCCAAACTCAAAATT-CCCCAGATT-TCT-------CA--TA-A-----A-A-AC-TAACAGTCA---AAAGCATTAGATTCCGTTTCA--CACTTGT--CGTCATTCACGTTCAT--AT-CGGTATTTTTTCTGTATTTTTTATA--GAGCGG-ATTCAAGGTGTGTTC-----TTCAGGCTA-TTTTAACGTTATCTCGG-ACAG-CGG-AGAACTGGGGGTTGAG-AGCATAATCATTTTA-TCGTGA-TTATATAAACACT-ATCG-AACTTAGTTTAAT-TA----ATT-A-TGTGAAA-TC
gi|5 : g-----------------T-----ATATGCAT-TCGA-TAGT----CCTGAA-CC---GT-TTCT--CT-CA-CAGAATATAATTAA-G-T-TTCC----ACGAATT----------------TAAATCCGTCACTGATT--A--C--TG-TAT-GTT----TA--GCTATAC-----CCCATCTAAAT-TAAA-A-A----ATAT----T-G----TCAAC--CT-T-C--TCTT-------------T-T--G------ACAAA--TGCA-GG--CC--GC-T----TTTCTTA-TGTTG------TAA-GGG-ACA-------CA-CT-G---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGAGGAA-CATCCATTCCCTTtaaca
gi|5 : tcCT--T-TATTTT-AAATTCCAT-TCGATAAACA-ATCGTGTGTAAACTGTTTCTC-GC-AT-TAATAGTATG--------GAGG----------GGGGGGGGG------CTGGAA--------ATCTTT-CCGCTAAAAGTT-A-A-AATATTTTCACTA------T-ATTAATCCA-TATT---T----GATAAA-TG-CCTGCTCTGTCATCCTTGGG-AAACT-CG-TGT-ACGGACGCATAA-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCCAATA-TTTTACTCTACA--TA-ATCATGA-A-TC-TA-CAGTC----AGAGCATC----TTCGTCTCA--CACTTGTGACGTCATTCATG-TCAT--ATGCGGTA---TTTCTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAAAAATAACTCGGAACAG-CGGTTGAATTGGGCGTTGAGCCGTAT-ATCATTTTACTCATGA-T--CATAAATGCT-ATCG-AAC--A---CAAT-CA----A-T-T-TAAGAAA-tattttaaattccattcgataaacaatcgtgtgtaaactgtttctcgcattaatagtatggagggggggggggctggaaatctttccgctaaaagttaaaatattttcactatattaatccatatttgataaatgcctgctctgtcatccttgggaaactcgtgtacggacgcataatcatatatgaggatgtacaccatgctgcaactcaaaatttcccccaatattttactctacataatcatgaatctacagtcagagcatcttcgtctcacacttgtgacgtcattcatgtcatatgcggtatttctgtatttttacagagcgcatcaggtgtgtatttactatttttaaaaataactcggaacagcggttgaattgggcgttgagccgtatatcattttactcatgatcataaatgctatcgaacacaatcaatttaagaaattt
gi|6 : tctatatgcattcgatagtcctgaaccgtttctctcacagaatataattaagtttccacgaatttaaatccgtcactgattactgtatgtttagctataccccatctaaattaaaaaatattgtcaaccttctcttttgacaaatgcaggccgcttttcttatgttgtaagggacacactgttttgttggtgcgatttctctggtgaggaacatccattccCCGATTAAAA-CCA--CCCTTCTTTTCTAGTCGTCTA--TGT-G-TAT-TATCAACTAATCTCTCTTAA-----------------TCCCTAATATACATATCGAGTAATGCTCCTTGAG-CCCGTGTCTTCTTTCG-AA-C-GAACA--ATTTA-G-T-TTTCCAGAGCGA---------------GTTC-AGAT-AGACGCTGATTCTA--CAATG-AATATGT----TAATCTTATA--ATTACATGGCC--AT-AACA-TTA----ATTG----T-T----TC-GCAACT-T-CACTC-C-------------T-T--GGTTGAAACAAAAGCGCAAGG--AC--AG-TAAACTACCTTA--GTTG------TAACGGG-AGGGCCCTAACA-CTAG---------CTTTGTGTGT-GG--CGTT-TTC----T-C--CGG--------TGAGGAA-CAT-CATTCCCtt
gi|6 : TCC-CAAT--GT-TTTGT--T-TATTTTTAAATTC-AT-TTCATAA----ATCGTGTGTAA-CTTATTCTC-GC-AT-TAATAGCATG--------G-GG----------GG-GGGGGG------CGGGaatgttttgtttatttttaaattcatttcataaatcgtgtgtaacttattctcgcattaatagcatggggggggggggcggggggagggggggggggcgtgtgcggag
gi|7 : ccgattaaaaccacccttcttttctagtcgtctatgtgtattatcaactaatctctcttaatccctaatatacatatcgagtaatgctccttgagcccgtgtcttctttcgaacgaacaatttagttttccagagcgagttcagatagacgctgattctacaatgaatatgttaatcttataattacatggccataacattaattgtttcgcaacttcactccttggttgaaacaaaagcgcaaggacagtaaactaccttagttgtaacgggagggccctaacactagctttgtgtgtggcgttttctccggtgaggaacatcatCAGAGAGGC-TAAATTATCTA--TTATG----TAAAAACTTTCATT--CACCCGATTTTCGTAA-CAGCA-AAA-------A---------GTTATACGATCTAT-TTATCAGCCTAATTAAAA-TCAGCCCC-TC--TTCT------CT---TATCG-T-C-T------------------------------------T-----ATATGCAC-TCGA-TAG--------GAA-CC---AT-TTCT--CG-AA-CAGA--ATAATGAA-GTT-TTCC----GCGAATTTTATA-AA------TCT-----AGTCACTGATT--A------------TCT----CA---CTG------TACTC----------------A----ATTA----T-G----TCAGC--CT-T-C--TCTT-------------T-T--G------ACAAA--CGCA-GG--CC--GC-T----TTTCTTA-TGTTG------CAA-GAG-ACG-------CA-CT-A---------TTTTGT---T-GGTGCGAT-TTC----T-C--TGG--------TGA-GAA-CATTCATTCCTT------------------------AACA--AAGATT-AAT------TAAGCACAC--GGAATTC-CAAT-A-TATTTCT--T-TATTTC-AAACTCCAT-TCAATAA-gggagggggggggggcgtgtgcggag
gi|8 : aaatatta--------ATCTAT-CCGCTAAAAGTT-G-A-AATATTTTAACTACATGTAT-ATTAATCCA-TATT---T----GACGAA-TG-CCTGCTCTGTCATCCTTGGGGAAACT-CG-TGT-ACGGACGCATAG-----TC-ATATATGAGGATGT-A-CA-CC-ATGCT-GC--AACTCAAAATTTCCCCAAA-----------------TA-ATCATGA-A-TC-TA-CAGTCGCTTAGAGCGTC----TTCGTCTCA--CACTTGTGATGTCATTCACG-TCATTTATCCAGTA---TTTGTGTA-TTTTTACA--GAGCGC-ATC--AGGTGTGTAT-----TT---ACTATTTTTAACAATAATTCGGAACAA-CGGTCGAATTGGGGGTTGAGTCGTAT-ATCATTTTACTCGTGA-T--CATAAACGCT-ATCG-AAC--A---CAGT-TA----A-T-A-TGTGAAA-TCACTTA
gi|9 : TTATG-AA-CGCGTTCTACAAAAGCCACAGATT--A--------TAT-CTCATCGTA--CTCATGCAGCTGATTTAGTAAACACAAA-T-ATCTAATTAGCATT-GATATTCAGC--CT-TAC--CC-TAAAACATTCTTTAT-T--G------ACAAA--CACC-GA--CC--GCAT----TTTCTTA-GGTTG------CGA-GGT-ACG-------CA-CT-GCATGCACTGTTGTGT---T-GGTGCGGT-TTCCACTT-CATCGGACATCTTGTAAGAAA-CATCCAATCCCT---ACCAG-AGAATGCGACGTTCCGGCG--AA-ATG-AAGAGT-AA-----ACGCAGGGAATTC-CAAC-A-TACTTCT--T-TATTTT-ATTCTCCAT-TCGATAA-CA-AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTATTCCTATTCATCCGTAGATTATTTAACTTACCGAGTTTTTCGCATTGATTCTTACAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGCAGAA
Unaligned ( gi|33 ): TATGTGAAATATCTTATTCATCCAATTTACACAACATC