lowQualScore : 1111111111111111111
lowQualScore : 2 1 1 111 111 2222222222222222 1 22222222 1 111 11 111111 2222 111 11 11 11111111 11 9999999999999999999 3333333 11 222222 111 33333333 1111111 111 111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333 555 111 222222222222 333 2222 55555 1 44 111
lowQualScore : 5 5 5 5 5 6 4 3 4 4 4 1 2 8 222 999999 4 8 4 4 4 1 4 66 2 9 4 111 4 5555555555555555 6 6 3 6 6 44444444 1 3 9999 6 111 6 00 777777 0 4444 444 7 8 8 88 99 6 6 2 7 6 6 0 6 5 66 22 66 22 5 888 888 77 0 5 99 1 5 55555555 11 0 8888888888888888888 0 0 6666666 88 666 6 222222 555 22222222 2222222 6 8 8 8 6 555 444 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 444 66 2 8888888888888 5 7777 666 5 5 333 333333333333 5 66 5 66 4 4 8 555 5 66 1111 5 5 00000 1 5 5 22 5 5 888
lowQualScore : . . . . . . . . . . . . . . ... ...... . . . . . . . .. . . . ... . ................ . . . . . ........ . . .... . ... . .. ...... . .... ... . . . .. .. . . . . . . . . . .. .. .. .. . ... ... .. . . .. . . ........ .. . ................... . . ....... .. ... . ...... ... ........ ....... . . . . . ... ... . .............................................................................................................................. . ... .. . ............. . .... ... . . ... ............ . .. . .. . . . ... . .. .... . . ..... . . . .. . . ...
lowQualScore : 7 7 0 0 0 0 4 3 4 4 4 9 0 9 222 444444 4 1 4 4 4 8 4 11 4 9 4 333 5 2222222222222222 7 7 3 7 7 22222222 0 3 3333 7 777 7 22 444444 8 0000 444 3 0 0 77 22 7 7 5 8 7 7 3 7 7 99 66 99 44 0 888 888 99 1 2 22 7 6 00000000 00 8 0000000000000000000 2 8 4444444 00 888 7 555555 222 00000000 6666666 0 0 0 0 0 222 000 2 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 000 99 2 1111111111111 0 8888 444 6 0 888 666666666666 0 99 0 11 4 4 9 666 0 99 2222 0 0 55555 4 0 0 55 0 0 111
consensus : TAAAGAT-AAA-CCACAGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TCAAACTTATT-TT---TTT--A---AATA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAA--TCGTATTCAAA-A--C-CT--------C-AGTTTT-CA-CCTGCA-CA--------AGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCC-GGTTT-AA-GTTAATGACGTCACA-NGTGTGTTT-ACTACTTAG-G-AGTTAAAA--GGC-GG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTC-GTCAAAT--GATGGCT-TGTTAGCG---CATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTG--A-T---TGCCAGC---CAGTGCTCAGAA-AAAAAATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTNAGG------A-G--C-AAT-CT---TTTGT-A-TAAT-A-T---C-AATTGTTA-ATG--ATT-TA-TT--C---A-A-CATT------TGC--T-T--GCA----A--ACA--A---ACCCCCCCACCCCCCCCCCCCCC--CCCTTG-AATT-T--ACGAAATCG-CGAGATACGTTGTCTCG-CTCAA-T-ATTATAGTAGAAGTGA-GGGTA---TTT--T-T----C--AAA-A--GGGCT-TATTTTG--TGTTAGTTT-GGAC-TTTT-GAGTATGCA--A-GAC--ATAG----TTGAT-A-TGC--AT-AAGATAA-TTAGA-TTTCCAA-GA-TCGAGTGGTAATTT
Reference ( gi|4 ) : TAAAGAT-AAA-CTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TCAAACTGATT-TT---TTT--A---AATA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAA--CCGTATTCAAACA--C-CT--------C-AGTTTT-CA-CGTGCA-TA--------AGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGTGT-AA-GTTAATGACGTCACA-CTTGTGTTT-ACTACTTAG-G-AGTTAAAA--GGC-GA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTC-CTCAAAT--GATGGCT-TGTTAGCA---CATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGTAAGTCAGTGCTAACTTACAGTGCTCAGAA-AAAAT-TATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTAC---T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG------A-G--C-AAT-CT---TTTGTTA-TAAT-A-TG--C-AATTATTACATG--ATT-TA-TT--C---A-AGCATT------TGC--T-T--GCA----A--ACA--A---ACCCCCCCCCCCCCCCCCCCCCC--CCCCTG-A-TT-T--ACTCAATCG-CGAGATACGTTGTCTTG-TTCAAGTGATTATAGTAGAAGTGA-GGGTA---TTT--C-T----C--AAA-A--GGGCT-TATTTTG--TGTTAGTTT-GGAC-TTTT-GAGTATGC---A-GAC--ATAG----TTGAT-A-TGCA-ATAAAGATAA-TTAGA-TTTC--A-GA-TGAGGTGGTAATTT
gi|6 : TAAAGATTAAATCTCCAA-GGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAA--AATTATT---TTT--A---AATAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAA--TCATATTCAAG-A--C-CT--------C-AGTTTT-CA-CCTGCAACA--------AGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGTTT-AT-GTCAATGACGTC-CA-GT-GTGTT---CTACTTAG-GGAGT--AAA--GGC-GG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAAT--GATGGCTCTGTTAGCG---CATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCACTG------------AAC------TGCTCCAAA-AACAA-TATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTACCT-T--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG------A-AGCC-AAT-C-----TTG-TA-TAATGA-T---C-AA-TGTTAAGTG--ATT-TA-TT--T---ACAGCATT------AG-----T--GCAAC--A--ACA--A----------CAACCCCCCCCCCCCC--CCCTTGAA-AT-T--GTGAAATCG-CAATATACG-TGTCTTGCTTCAA-TATTTATAGTAGAAGTGA--GGTA---TTT--T-T----CCAAAA-G--GGGCT-TACTTTA--TGTTAGTTT-GGAC-TTTT-GAGTATCA---A-GAC--ATAG----TTCAT-ACTGC--AT-AAGATAATTTAGACTTTCA-A-GA-TCGAGTGGTAA
gi|20 : TAAAGAT-AAG-CCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TCAAACTTATT-TT---CGT--A---AATA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAA--TCGTa
gi|16 : aAAAGAT-AAA-CCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TCAAGCTTATT-TTT--TTT--A---AATA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAA--TCGTATTCAAAGA--C-CTCATGCATGC-AGTTTT-CA-CCTGCA-TA--------AGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT
gi|21 : AAGTT-AAA-CTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TCAAACTTATT-TTTTTTTT--A---AATA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAA--TCtt
gi|5 : T-AAT-CTCCAA-GGTTTTAC-ATTACAAATT-AAATACTG-AATCAAAATTATT-TT---TTTTTA---AATA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCC-TATTCAAAGAAAC-CT--------C-AGTTTT-CA-CCTGCA-CA--------AGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGTTT-TATGTCAATGACGTCACA-AGTGTGTTTTACTACT-AG-G-AGT-AATA--GGC-GGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTC-GTCAAAT--GATGGCT-TGTTAGCG---CACCTCGAAAATTTGAAGAAAGGAATCGATTCCATGC-ATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCACTGTAACT---TGCT------CAATAC-CAAAA-------TATTGG--AT--GATCA-GAAAT--CTG-CAA--CTAC---T--TTGAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG-A-TCTGATTGAA---GGTCTTCGGA------A-G--CCAATGCT---TTTGT-A-TAAT-A-TTTTC-AAT-GTTA-ATG--ATTGTA-TT--C---A-G--ATT------AAG--T-T--GCA----A--ACA--A---------CAACACACCCCCCCCCC--CCTTGA-A-TT-TGGA---AATCGCCAAGATACGTT-TCTTG-TCAAAAATATTATAGTA-AAGTGA-GGGTAT--TTT--T-T----C--AAACA--GGGCT-TATTTTA--TGTTAGTTT-GGAC-TTTT-GAGTAAGCAA-A-GAC--ATAG----TTGAT-A-TGC--AT-AAGATAA-TTAGACTTTCA-A-GA-TCGAGTGGTAATT
gi|19 : tT-AAA-CTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TCAAACTTATT-TT---TTT--TTTTAATA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAA--TCTTA
gi|7 : gt-AAG-CCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TCAAACTTATTGTT---CTT--G---AATA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAA--TCGTATTCAAACA--C-CT--------C-AATTGT-CT-CCTGCA-TA--------AGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGTTT-AA-GTTAATGACGTCATA-AGTGTGTTT-ACAACGTAG-G-AGTT-ATA--GAC-GG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTC-CTCAAAT--GATGGCT-TGTTATCA---CATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCACTc
gi|11 : AA-GGTTTTACCAT-AAAAGCT-AAATA-GA-A-TTAAGTTATTT-TT---TTT--A---AAAT-TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAA--TCGTTTTCAAACA--CACT--------CCAGTTTTACAACGTGCA-CA--------AGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GGAA--AA-GTTAATGACGTCACAGCGTGTGTTT-ACTACTTAGCG-AGTT-AAA--GGCGGA-AGA-TGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTC-GTTA-----------T-CCACAACA---TAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCACCG------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTACT--T--T-GAAaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|15 : aGTT-AA-TA-TGCA-TTAACTTAATT-TT---TTA--A---AATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATT-------------------------------T--------C-AGTTTT-CAACGGGCA-TATTTTAAAAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATA-CGTGTGTTT---TACTTA
gi|3 : TACT-AG-G-AGTTAAA---GGC-GA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTA-GTCAAAA--GATGGTC-TGTTAGGA---CATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCA-----AGT---TGTCAGTT---AGTGCTCAGAA-AAAAAATATTGGG-AT-AGATCA-TAAAT--CTG-CAA--CTATACTT--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGGT-GAA---GGGCTTGAGG------ATG--CCAAT-AT---TTTGT-G-TAAT-A-T---C-AATTGTTA-ATG--ATT-TA-TT--C---A-A-CATT------TG---T-T--GCA----A--ACAACA---ACC------------------CC--CCATTGAA-TT-T--ACGAAGTAG-CGAGATACGTTGTCTCG-CTCAA-TTATTATAGCACAAGTGA-GGGCA---TTT--CTT----C--AAA-A--GGGCT-TATTTTG--TGTTAGTTT-GGAC-TTTT-GAGTATGCG--A-GAC--ATAG----TTGAT-A-TGC--AT-AAGATAA-TTAGA-TTTTCAA-GA-TCGAGTTATAATTTttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|29 : tgTTAAAATTGG--GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTC-GCCAAAT--GATatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|15 : -TTATTC--GGATCCCTC-GTCAAAT--CATGGTT-TGTTAGCA---TATC---AAAATTTG
gi|7 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttac--TGATTTTTC-CTCAAATTTGATG----TGATAACAAGCCATC---A---TTTGAGGAG--GGATCA
gi|31 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattc-TGTTAGCT---CATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTtctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|7 : TGCTTAGAA-AAAAAATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTAT---T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA------A-AGCC-AAT-CT---TTTGT-A-TGCT-A-T---C-AATTGATA-ATG--ATT-AA-TT--C---A-C-CATT-------GC--T-T--GCA----ACAACA--A---ACACC--------------------CTATTG-A-ATAT--ACAAGATCG-CGAGATACGTAGTCTCG-CTGAA-T-ATTATAATAGAAGTGA-GGGTA---TTT--T-TTTTTC--AAA-A--GGGCT-TCTTTTG--TGTTAGTTT-GGAC-TTTTAGAGT
gi|12 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagcT-AGATCATGAAATTGCTGGCAAACCTAA---TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAAACA-G--T-ATT-CTGGCTTCGATACTAAT-A-AC--CTCACTCTTAT-TT--ATT-TA-TT--TACAA-AGCATTTACTGATGT--T-C--GCA----C--ACA--A---CCCCACCCACCC
gi|26 : --C-AAT-CT---T-----A-TAAT-AATG-----ATTATTAT-TGTTATT-TA-TTTTC---A------T------TGT--TATAAGCA----T--ACA--T---ACACCCCCCCCCCCCCCtatgatttacaggaaaataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|2 : AAT-A-TG----GATTA---------ATT-TAGTT--G---A-AATATT------TTCATT-T--GTAGTGGA--ACG--ATTCACCCCCCCCCCCCCCCCCCCggacccttgtaaatatgtg
gi|8 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttCCCCCACTCCAACCCTTG-AATT-T--GCGAGATCG-CAAGAAACGTTGTCTCA-CTGAA-T-ATTTTAGTAGAAGTGA-GGATA---TTTATT-T----C--AAA-A--GTGCT-TATTTAG--TGTTAGTTT-GGACTTTTT-GACTATACA--A-GAC--ATTG----TTGAT-A-CGC--AT-AACATAA-GCAGA-TTTTCAA-GA-TTGAGTGGTAATTTtgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|1 : caactgttaacatcttatcaattgttagcatcagttgcaacaacaaC--CCCCTG-AATT-T--ATGAAATCG-CGA--TACTTTGTCT-A-CTCA--T-ATTAT--TA--AGTGAAGGGTAATTTTT--C-TT---C--AAA-AAGGGGCTATAATTTGGTTGTTAGTTTTGGAC-TTT--GAGT-TGGTTAA-GACCAATAG----TTGATAA-TGCATACAGAAA-AA-TTAG---TTCA-A-GA-TCAAGTGATAATTTataaaaaggggtgtgtgagaaactagctcctgtcgtccattctgtaagttaacattatttcaaatatattaaatagcttcaatgttatcaggatggtagtttgtgtcatagaaatttttttggtcaaaaattaaatatcatgattgtaattaacttcctttgcaccttatattatggcggatatattcaacaacatacacacatgttctgcagaagaccgataagttcacaatacaactgaaatgtttcagagaagttttatgaaaattatttgaaaattttcattcccccaattttcattacagcagaaagttagatgatccatttaccagccagattaaaaccaacccctcttctcctatcg
gi|14 : --CCTCTG-AATT-T--ACAAAATAG-CGAGATACGTTGTCTCG-CTCAA-T-ATTATAGTAGAAGTGA-GGGTA---CTT--T-T----G--AAA-A--GGGCT-TATTTTG--TGTTAGTTT-GGAC-TTCT-GAGTATGCA--A-GAC--ACAGAACTTTGAT-A-TGC--AT-AAGATAA-TTAGA-TTTTCAA-GA-TCGAGTGGTTATTTattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|13 : --CCTCTG-AATT-T--ACAAAATAG-CGAGATACGTTGTCTCG-CTCAA-T-ATTATAGTAGAAGTGA-GGGTA---CTT--T-T----G--AAA-A--GGGCT-TATTTTG--TGTTAGTTT-GGAC-TTCT-GAGTATGCA--A-GAC--ACAGAACTTTGAT-A-TGC--AT-AAGATAA-TTAGA-TTTTCAA-GA-TCGAGTGGTTATTTctaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|2 : ATTTTG--TTTTAGTTC-GGAT-TTTTTGAGTGTGC---AAGAC--ATAG----TTGAT-A-TGC--ATAAA-ATAA-TAAAATTTTC--ATGATTGAGG-GGTAATCTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|22 ): ATTGAAGCATTAGTTTCCCTCCCTTTTCATCTAAATTTACGAGCATGCAAGATACGTATGTTGTCTCATTGGATGTTACAGAAGAGAAAGTCTTTATTCAAAAGCTTA
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 3333333333333333 111 1 111 11 111 111 999999999999999999999 11111 222222 111 33333333 2222222 222 444444444444444444444444444 11111 44444444 1111 1111 1111
lowQualScore : 5 3 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 8888888888888888 000 5 5 0 5 66 1 5 5 5 000 5 77 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 666666666666666666666 3 6 6 5 5 66666 77 777777 77 5 333 99 6 6 6 99 111 1 44444444 5 0 4444444 5 5 000 5 7 777 66 5 000000000000000000000000000 44444 33333333 6 1 111 555 0 55 3 3 1 3 0 7777 3 3 666 7 3 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . . ... ...... . . . . . . . .. . . . ................ ... . . . . .. . . . . ... . .. . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. ..................... . . . . . ..... .. ...... .. . ... .. . . . .. ... . ........ . . ....... . . ... . . ... .. . ........................... ..... ........ . . ... ... . .. . . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . . .
lowQualScore : 7 0 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 4444444444444444 000 7 7 7 7 11 4 7 7 7 000 7 11 7 7 33 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 888888888888888888888 5 7 7 7 7 66666 99 444444 99 7 888 22 7 7 7 00 777 0 55555555 7 1 3333333 7 7 000 0 0 555 99 0 222222222222222222222222222 66666 88888888 7 1 333 888 2 00 6 6 4 6 4 7777 6 6 444 3 6 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4 2
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAC--ACCT--------CAG---T-TTT-CACC-TGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTG------A-TGTTAGC---CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTGTTA-A-TG--ATT-TAT------TT-CAG--CATT------TG-TTGCA--A--ACAA-ACCCCCCCACCCCCCCCCCCCCC---CCCCTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACAGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAA---ACCT--------CAG---T-TTT-CACC-TGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCC-GGT-TTAA-GTTAATGACGTCACAN-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTG------ATTGCCAGC---CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTNAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTGTTA-A-TG--ATT-TAT------T--CAA--CATT------TGCTTGCA--A--ACAA-ACCCCCCCACCCCCCCCCCCCCC---CCCTTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTCCAAGATCGAGTGGTAATTT
gi|1 : C---CCCCTGA--AT-TTATGAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AAAGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAAACACACTC--------CAG---T-TTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GGA-A-AA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCACCG------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTA---CT-T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : T-AGATCATGAAATTGCTGGCAAACCTA---A--TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAA-A--CAGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTCTTA-T-TT--ATT-TAT------TTACAAAGCATTTACTGATGTTCGCA--C--ACAA-CCCCACCCACCC
gi|13 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTtatgatttacaggaaaataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAA----------------CGGGCATATTT-TA------A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAG--ACCTCATGCATGCAG---T-TTT-CACC-TGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : CACCCCCCCCCCCCCC---CCCCCAACCATGCTATTAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-aatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : CCCTCCCTTTT---CATCTAA--AT-TTACGAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaagcattagttt--CAAT-CTT-----------A-TAAT-A---A-TGATTATTA-T-TGTTATT-TAT------TTTCA------T------TG-TTATA--A--GCAT-ACATAC--ACCCCCCCCCCCCCCGGACCCTTG
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCA--A------GTTGTCAGT---TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CT-GCAA--CTATACT--T--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGG-TGAA---GGGCTTGAGG---ATGC-CAAT-ATTTTG-------TG-TAAT-A---T-CAATTGTTA-A-TG--ATT-TAT------T--CAA--CATT------TG-TTGCA--A--ACAACAACCCCCCA--------------------TTGA--AT-TTACGAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AATT-A-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAAAC--ACCT--------CAG---T-TTT-CACG-TGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGTAAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTA---C--T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTGT------TA-TAAT-A---TGCAATTATTACA-TG--ATT-TAT------T--CAAG-CATT------TGCTTGCA--A--ACAA-ACCCCCCCCCCCCCCCCCCCCCC---CCCCTG---AT-TTACTCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAAAGAAACCT--------CAG---T-TTT-CACC-TGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCACTG-----------TAAC---T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTA---CT-T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG--ATCTGATTGAA---GGTCTTCGGA---A-GC-CAATGCTTTTG-------TA-TAAT-ATTTT-CAA-TGTTA-A-TG--ATTGTAT------T--CAG---ATT------AAGTTGCA--A--ACAA--------CAACACACCCCCCCCC---CCCTTGA--AT-TTG-GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttaatctccaTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAAG---ACCT--------CAG---T-TTT-CACC-TGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCACTG------A------------ACTGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTA---CCTT--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG---A-AGCCAAT-C--TTG-------TA-TAATGA---T-CAA-TGTTA-AGTG--ATT-TAT------TTACAG--CATT------AG--TGCAACA--ACAA--------CAACCCCCCCCCCCCC---CCCTTGA--AA-TTGTGAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAAAC--ACCT--------CAA---T-TGT-CTCC-TGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCACTa
gi|7 : CATTG------ACTGT-AGC------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTA---T--T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA---A-AGCCAAT-CTTTTG-------TA-TGCT-A---T-CAATTGATA-A-TG--ATT-AAT------T--CAC--CA-T------TGCTTGCAACA--ACAA-A------CA------------CC---CTATTGA--AT-ATACAAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaa-CAACTGTTA-A-CA--TCT-TATCAATTGT--TAG--CATC------AG-TTGCA--ACAACAA----CCCCCACTCCAACCC-----------TTGA--AT-TTGCGAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 9999999999999999999999 11111 222222 1 11 111 33333333 2222222 111 111111 111111 2222222 11 55555555 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 0 6666666666666666666666 3 6 6 5 5 66666 77 777777 77 5 333 99 6 3 77 111 1 44444444 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 4 4 555555 5555555 7777 4 22 66 11111111 6 1 33 555 0 55 3 3 1 3 0 7777 3 3 666 7 3 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. . ...................... . . . . . ..... .. ...... .. . ... .. . . .. ... . ........ . . ....... . . ... . . .. ...... . .. . . . ...... ....... .... . .. .. ........ . . .. ... . .. . . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 1 2222222222222222222222 5 7 7 7 7 66666 99 444444 99 7 888 22 7 3 22 777 0 55555555 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 8 4 111111 0000000 0000 4 22 11 33333333 7 1 00 888 2 00 6 6 4 6 4 7777 6 6 444 3 6 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTG---------TGTTAGC---CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T-GCA--A--ACAA-A--C-CCCACCCCCCCCCCCCCC---CCCCTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTG-------A-TGTTAGC---CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------TG-T--T-GCA--A--ACAA-ACCCCCCCACCCCCCCCCCCCCC---CCCCTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : C---CCCCTGA--AT-TTATGAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCACCG-------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTA---CT-T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTA---A--TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAGAACCTG-TTGAACGTGGGCTCAAGGCAAA-A--CAGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TCGCA--C--ACAA-CCCCACCCACCC
gi|13 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTtatgatttacaggaaaataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT-G-G--A--ACGA------TTCACCCCCCCCCCCCCC---CCCCCAACCATGCTATTAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : CCCTCCCTTTT---CATCTAA--AT-TTACGAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaagcattagttt--CAAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--T-ATA--A--GCAT-ACATAC--ACCCCCCCCCCCCCCGGACCCTTG
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAA-G-------T-TGTCAGT---TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CT-GCAA--CTATACT--T--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAGATTCTGG-TGAA---GGGCTTGAGG---ATGC-CAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TA-T-T-C--AACATT------TG-T--T-GCA--A--ACAACAACCCCCCA--------------------TTGA--AT-TTACGAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AATT-A-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGTAAGTCAG-TGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTA---C--T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T-GCA--A--ACAA-ACCCCCCCCCCCCCCCCCCCCCC---CCCCTG---AT-TTACTCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCACTG------------TAAC---T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTA---CT-T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATCTGATTGAA---GGTCTTCGGA---A-GC-CAATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T-GCA--A--ACAA--------CAACACACCCCCCCCC---CCCTTGA--AT-TTG-GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCACTG-------A------------ACTGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTA---CCTT--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAGAATCTGA-TGAA---GGTCTTCAGG---A-AGCCAAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T-GCAACA--ACAA--------CAACCCCCCCCCCCCC---CCCTTGA--AA-TTGTGAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCACTa
gi|7 : CATTG-------ACTGT-AGC------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTA---T--T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-TGGGGGAATCTGA-TGAA---GGGCTTGAGA---A-AGCCAAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--A-T-TAAT-T-C--ACCATT------GC-T--T-GCAACA--ACAA-A------CA------------CC---CTATTGA--AT-ATACAAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaa-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T-GCA--ACAACAA----CCCCCACTCCAACCCT-----------TGA--AT-TTGCGAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 999999999999999999999 11111 222222 1 11 111 33333333 2222222 111 111111 111111 2222222 11 55555555 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 222222222222222222222 3 6 6 5 5 66666 77 777777 77 5 333 99 6 3 77 111 1 44444444 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 4 4 555555 2222222 7777 4 22 66 55555555 9 555 55 3 3 1 3 0 7777 3 3 666 7 3 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. ..................... . . . . . ..... .. ...... .. . ... .. . . .. ... . ........ . . ....... . . ... . . .. ...... . .. . . . ...... ....... .... . .. .. ........ . ... .. . . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 888888888888888888888 5 7 7 7 7 66666 99 444444 99 7 888 22 7 3 22 777 0 55555555 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 8 4 111111 6666666 0000 4 22 11 88888888 4 888 00 6 6 4 6 4 7777 6 6 444 3 6 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGT----CAGC---------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T-GCA--A--ACAAA-------CACCCCCCCCCCCCCC---CCCCTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGT--GTTAGC---------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T-GCA--A--ACAAA---CCC-CACCCCCCCCCCCCCC---CCCCTGA--AT-TTACGAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : C---CCCCTGA--AT-TTATGAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCACCG------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTA---CT-T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTA---A--TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAGAACCTG-TTGAACGTGGGCTCAAGGCAAA-A--CAGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TCGCA--C--AC-AA---CCC-CACCCACCC
gi|13 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTtatgatttacaggaaaataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : ---CCTCTGA--AT-TTACAAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT-G-G--A--ACGA-----TT-CACCCCCCCCCCCCCC---CCCCCAACCATGCTATTAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : CCCTCCCTTTT---CATCTAA--AT-TTACGAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaagcattagttt--CAAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--T-ATA--A--GCATA---CATACACCCCCCCCCCCCCCGGACCCTTG
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTT--GTCAGT---------TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CT-GCAA--CTATACT--T--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAGATTCTGG-TGAA---GGGCTTGAGG---ATGC-CAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TA-T-T-C--AACATT------TG-T--T-GCA--A--ACAA--------CA---------ACCCC---CCATTGA--AT-TTACGAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AATT-A-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCACTGTAAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTA---C--T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T-GCA--A--ACAAACCCCCC-CCCCCCCCCCCCCCCC---CCCCTG---AT-TTACTCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCACTG-----TAAC---------T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTA---CT-T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATCTGATTGAA---GGTCTTCGGA---A-GC-CAATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T-GCA--A--ACAA--------CAACACACCCCCCCCC---CCCTTGA--AT-TTG-GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCACTG------AAC------------TGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTA---CCTT--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAGAATCTGA-TGAA---GGTCTTCAGG---A-AGCCAAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T-GCAACA--ACAA--------CAACCCCCCCCCCCCC---CCCTTGA--AA-TTGTGAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCACTa
gi|7 : ACTGT-----AGC------------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTA---T--T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-TGGGGGAATCTGA-TGAA---GGGCTTGAGA---A-AGCCAAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--A-T-TAAT-T-C--ACCATT------GC-T--T-GCAACA--ACAAA-------CA------------CC---CTATTGA--AT-ATACAAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T-GCA--ACAACAA------------CCCCCACTCCAA---CCCTTGA--AT-TTGCGAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 44444444 22222222222222 11111 222222 1 11 111 33333333 2222222 111 111111 111111 3333333333333333333333333333333333333333333 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 77 22222222 44444444444444 888 6 5 5 66666 77 777777 77 5 333 99 6 3 77 111 1 44444444 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 4 4 555555 5555555555555555555555555555555555555555555 555 44 3 44 3 1 3 0 7777 3 3 666 7 3 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. .. ........ .............. ... . . . ..... .. ...... .. . ... .. . . .. ... . ........ . . ....... . . ... . . .. ...... . .. . . . ...... ........................................... ... .. . .. . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 99 22222222 55555555555555 333 7 7 7 66666 99 444444 99 7 888 22 7 3 22 777 0 55555555 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 8 4 111111 2222222222222222222222222222222222222222222 444 66 3 66 3 4 6 4 7777 6 6 444 3 6 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-AGCCAGTGCT------CAG-----AAAAAAA-A-TATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--A--ACA--AA------CA-CCCCCCCCCCCCC---CCCCTGA--AT-TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGTCAGCCAGTGCT------CAG-----AAAAAAA-A-TATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTA---C--T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--A--ACA--AA------CACCCCCCCCCCCCCC---CCCCTGA--AT-TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : C---CCCCTGA--AT-TTAT--GAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCA--CCG-----CAGTGCT------CAG-----AACAAAATC-TATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTA---CT-T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTA---A--TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAGAACCTG-TTGAACGTGGGCTCAAGGCAAA-A--CAGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TC---GCA--C--ACA--A-------------CCCCACCCAC---CCTATG---AT-TTACAGGAA-A
gi|13 : ---CCTCTGA--AT-TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : ---CCTCTGA--AT-TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT----G-G--A--ACG--ATT-----CACCCCCCCCCCCCCC---CCCCCAACCATGCTAT--TAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : CCCTCCCTTTT---CATCTAA--AT-TTAC--GAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaagcattagttt--CAAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--TATAAGCA--T--ACA--TA------CACCCCCCCCCCCCCCGGACCCTTG
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTTGTCAGTTAGTGCT------CAG-----AAAAAAA-A-TATTGGG-AT-AGATCA-TAAAT--CT-GCAA--CTATACT--T--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAGATTCTGG-TGAA---GGGCTTGAGG---ATGC-CAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TA-T-T-C--AACATT------TG-T--T----GCA--A--AC---AA------CA---------ACCCC---CCATTGA--AT-TTAC--GAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AATT-A-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGTAAGTCAGTGCTAACTTACAGTGCTCAGAAAAA-ATTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTA---C--T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAGAATCTGATTGAA---GGGCTTGAGG---A-G--CAAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T----GCA--A--ACA--AACCCCCCCCCCCCCCCCCCCCCC---CCCCTG---AT-TTAC--TCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCA--CTGT-AACT--TGCT------CAA-----TACCAAA-A-TATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTA---CT-T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATCTGATTGAA---GGTCTTCGGA---A-GC-CAATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T----GCA--A--AC---AA------CAACACACCCCCCCCC---CCCTTGA--AT-TTG---GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCA--CTG--AAC---TGCT------C-C-----AAAAACA-A-TATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTA---CCTT--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAGAATCTGA-TGAA---GGTCTTCAGG---A-AGCCAAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T----GC---A--ACAACAA------CAACCCCCCCCCCCCC---CCCTTGA--AA-TTGT--GAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCA--CTa
gi|7 : A--CTGT-AGC---TGCT------TAG-----AAAAAAA-A-TATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTA---T--T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-TGGGGGAATCTGA-TGAA---GGGCTTGAGA---A-AGCCAAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--A-T-TAAT-T-C--ACCATT------GC-T--T----GCAACA--ACA--AA------CA------------CC---CTATTGA--AT-ATAC--AAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T----GCA--ACAACA--A-----------CCCCCACTCCAA---CCCTTGA--AT-TTGC--GAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 7777777777777777777777 111111 222 111 22222222 2222222 111 111111 22222222 22222222222222222 33333333 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 77 0000000000000000000000 3 6 6 5 5 333333 77 999 77 5 333 99 6 6 6 888 111 1 88888888 5 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 33333333 77777777777777777 88888 44444444 1 555 7777 44 3 1 3 0 7777 3 3 666 3 7 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. .. ...................... . . . . . ...... .. ... .. . ... .. . . . ... ... . ........ . . . ....... . . ... . . .. ...... . .. . ........ ................. ..... ........ . ... .... .. . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 99 3333333333333333333333 5 7 7 7 7 777777 99 333 99 7 888 22 7 7 7 222 777 0 88888888 7 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 11111111 22222222222222222 88888 44444444 6 444 1111 66 3 4 6 4 7777 6 6 444 6 3 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--A--ACAA--------CACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--A--ACAAA-------CACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : CC---CCCTGAAT----TTAT--GAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCA--CCG-------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTACT--T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTAA---TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAA-A--C-AGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TC---GCA--C--ACAA-------------CCCCACCCACC---CTATG-AT----TTACAGGAA-A
gi|13 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT----G-G--A--ACGATT------CACCCCCCCCCCCCCC---CCCCCAACCATGCTAT--TAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : CCCTCCCTTTTC---ATCTAAAT----TTAC--GAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaagcattagttt--C-AAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--TATAAGCA--T--ACATA-------CACCCCCCCCCCCCCCGGACCCT
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtgtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTTGTCA-------GT-------TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CTG-CAA--CTATACTT--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGGT-GAA---GGGCTTGAGG---ATG--CCAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT---C--AACATT------TG-T--T----GCA--A--ACAA--------CAACCCCCCAT-----------TGAAT----TTAC--GAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AA-TTA-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-AAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTAC---T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T----GCA--A--ACAAACCCCCCCCCCCCCCCCCCCCCCC---CCCTG-AT----TTAC--TCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCA--CTGT-A-------AC-------T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTACT--T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG--ATCTGATTGAA---GGTCTTCGGA---A-GC-C-AATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T----GCA--A--ACAAC-------AACACACCCCCCCCCC---CCTTGAAT----TTG---GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCA--CTG--A-------AC----------TGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTACCT-T--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG---A-AGCC-AAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T----GCAACA--ACAAC-------AACCCCCCCCCCCCCC---CCTTGAAA----TTGT--GAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCA--CTa
gi|7 : A--CTGT-A-------GC----------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTAT---T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA---A-AGCC-AAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--ATT-AATT---C--ACCATT------GC-T--T----GCA--ACAACAAA-------CACCCTAT--------------TGAAT----ATAC--AAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T----GCA--A---CAA--------CAACCCCCACTCCAAC---CCTTGAAT----TTGC--GAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 7777777777777777777777 111111 222 111 22222222 2222222 111 111111 2222222 2222222222222222222222222222222222222222 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 77 0000000000000000000000 3 6 6 5 5 333333 77 999 77 5 333 99 6 6 6 888 111 1 88888888 5 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 1111111 7777777777777777777777777777777777777777 1 555 7777 44 3 1 3 0 7777 3 3 666 3 7 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. .. ...................... . . . . . ...... .. ... .. . ... .. . . . ... ... . ........ . . . ....... . . ... . . .. ...... . .. . ....... ........................................ . ... .... .. . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 99 3333333333333333333333 5 7 7 7 7 777777 99 333 99 7 888 22 7 7 7 222 777 0 88888888 7 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 3333333 3333333333333333333333333333333333333333 6 444 1111 66 3 4 6 4 7777 6 6 444 6 3 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--AACA-A--------C-ACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--AACA-A--------C-ACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : CC---CCCTGAAT----TTAT--GAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCA--CCG-------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTACT--T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTAA---TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAA-A--C-AGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TC---GCA--CACA-A--------------CCCCACCCACC---CTATG-AT----TTACAGGAA-A
gi|13 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT----G-G--AACG-ATT------C-ACCCCCCCCCCCCCC---CCCCCAACCATGCTAT--TAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : --AGCATT------AG-T--T---------------------------TCCCTCCCTTTTC---ATCTAAAT----TTAC--GAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attga--C-AAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--TATAAGCA--TACATA--------C-ACCCCCCCCCCCCCCGGACCCT
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtgtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTTGTCA-------GT-------TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CTG-CAA--CTATACTT--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGGT-GAA---GGGCTTGAGG---ATG--CCAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT---C--AACATT------TG-T--T----GCA--AACA-A--------C-AACCCCCCAT-----------TGAAT----TTAC--GAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AA-TTA-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-AAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTAC---T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T----GCA--AACA-AACCCCCCCC-CCCCCCCCCCCCCCC---CCCTG-AT----TTAC--TCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCA--CTGT-A-------AC-------T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTACT--T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG--ATCTGATTGAA---GGTCTTCGGA---A-GC-C-AATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T----GCA--AACA-A--------CAACACACCCCCCCCCC---CCTTGAAT----TTG---GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCA--CTG--A-------AC----------TGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTACCT-T--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG---A-AGCC-AAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T----GCAACAACA-A--------CAACCCCCCCCCCCCCC---CCTTGAAA----TTGT--GAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCA--CTa
gi|7 : A--CTGT-A-------GC----------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTAT---T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA---A-AGCC-AAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--ATT-AATT---C--ACCATT------GC-T--T----GCA--A-CA-A--------C-AAACACCCTAT----------TGAAT----ATAC--AAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T----GCA--A-CA-A--------C-AACCCCCACTCCAAC---CCTTGAAT----TTGC--GAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 1111111111 22222222 1 111 11 111 111 7777777777777777777777 111111 222 111 22222222 2222222 111 111111 2222222 2222222222222222222222222222222222222222 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 1111111111 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 77 0000000000000000000000 3 6 6 5 5 333333 77 999 77 5 333 99 6 6 6 888 111 1 88888888 5 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 1111111 7777777777777777777777777777777777777777 1 555 7777 44 3 1 3 0 7777 3 3 666 3 7 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .......... ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. .. ...................... . . . . . ...... .. ... .. . ... .. . . . ... ... . ........ . . . ....... . . ... . . .. ...... . .. . ....... ........................................ . ... .... .. . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 3333333333 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 99 3333333333333333333333 5 7 7 7 7 777777 99 333 99 7 888 22 7 7 7 222 777 0 88888888 7 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 3333333 3333333333333333333333333333333333333333 6 444 1111 66 3 4 6 4 7777 6 6 444 6 3 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--AACA-A--------C-ACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--AACA-A--------C-ACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : CC---CCCTGAAT----TTAT--GAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAA---ACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCA--CCG-------------------CAGTGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTACT--T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTAA---TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAA-A--C-AGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TC---GCA--CACA-A--------------CCCCACCCACC---CTATG-AT----TTACAGGAA-A
gi|13 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : C---CTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGGGCA--------------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---AGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT----G-G--AACG-ATT------C-ACCCCCCCCCCCCCC---CCCCCAACCATGCTAT--TAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : --AGCATT------AG-T--T---------------------------TCCCTCCCTTTTC---ATCTAAAT----TTAC--GAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attga--C-AAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--TATAAGCA--TACATA--------C-ACCCCCCCCCCCCCCGGACCCT
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATtgtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTTGTCA-------GT-------TAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CTG-CAA--CTATACTT--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGGT-GAA---GGGCTTGAGG---ATG--CCAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT---C--AACATT------TG-T--T----GCA--AACA-A--------C-AACCCCCCAT-----------TGAAT----TTAC--GAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AA-TTA-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-AAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTAC---T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T----GCA--AACA-AACCCCCCCC-CCCCCCCCCCCCCCC---CCCTG-AT----TTAC--TCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAA---AGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCA--CTGT-A-------AC-------T--TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTACT--T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG--ATCTGATTGAA---GGTCTTCGGA---A-GC-C-AATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T----GCA--AACA-A--------CAACACACCCCCCCCCC---CCTTGAAT----TTG---GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA---G-A--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCA--CTG--A-------AC----------TGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTACCT-T--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG---A-AGCC-AAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T----GCAACAACA-A--------CAACCCCCCCCCCCCCC---CCTTGAAA----TTGT--GAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCA--CTa
gi|7 : A--CTGT-A-------GC----------TGCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTAT---T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA---A-AGCC-AAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--ATT-AATT---C--ACCATT------GC-T--T----GCA--A-CA-A--------C-AAACACCCTAT----------TGAAT----ATAC--AAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T----GCA--A-CA-A--------C-AACCCCCACTCCAAC---CCTTGAAT----TTGC--GAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
blockSeqs : T . T C T C C C A C G TTT TTTT A A G C . A . A C T CGGGCA CATGCATG . . AC C T T C ATG . T G T C T A T . G A TT C G A G C . TG T C A TCG AG C GT T CCT CTG . AG TAAGTCAGTGCTAACTTACAG A . . A T TGCTGG AC ACT GA T ATA . . C G ATT . G AAGC C G T . G TTT G T AT ACATC T TT G TACA TGCTTGCAAACAAACCCCCCCCCC C GGA CATG AG C A C GTAT A T AAA G T T . . TTTT TA A CA C . . . T T . A . AACT . C A A . . T
blockSeqs : . . . A . A . . . . . T TTA . . . . . . . A . . AGAAAC . . . A . . . . . . . . . A . A T . . A . . G . . . . . . . A . . C . T . . . . TCAGTTAG T . . . . CTGG . CT . . ATA . . . . ATT . G AAGC . . . . . . . T . CA . . . GTTA GTTATAAGCATACATACAC T . . . . A . . . . . . G . . . T . C . . . . . . A . . . AACT . . . . . . .
blockSeqs : . . . C . . . . . . . . A . . . . . . . A . . AGAC . . . T . . . . . . . . . C . A T . . A . . A . . . . . . . T . . C . T . . . . TAACT A . . . . CTG . T . . ATA . . . . GT . C ATG . . . . . . . T . AG . . . CAA TGTAGTGGAACGATTCAC C . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . A . . . . . . . C . . ACAC . . . T . . . . . . . . . A . . T . . A . . A . . . . . . . A . . C . T . . . . TAGC A . . . . CTG . . . . AT . . . . AT . C AGC . . . . . . . T . G . . . TCA AAGTTGCAAACAACAAC C . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . A . . . . . . . A . . ACAC . . . C . . . . . . . . . A . . G . . . . . C . . . . . . . G . . . . G . . . . AAC . . . . . CTG . . . . . . . . . AT . G AG . . . . . . . T . T . . . TT AGTGCAACAACAACAAC C . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A . . . . . . . A . . GAC . . . T . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . CTG . . . . . . . . . . . C . A . . . TT TGTTGCAAACAACAA C . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . A . . . . . . . C . . . . . . A . . . . . . A . . . CA GCTTGCAACAACAA A . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . A . . . . . . . . . . . . . A . . . CA AGTTGCAACAACAA . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . AGTT . . . . . C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : A***** ** AGAC****** ******** A* ** TAACTTA*************** *** ** *** ANGC**** ******* *** TCA**** NGTTGCAACAACAA************************** **** ** ** ** **
originalCons : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAA---ACA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGT-A-------GC-------CAGTGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG---A-G--C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T----GCA--AACA-A--------C-ACCCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
finalCons : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTTA-----AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAGAC------CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGTAACTTA---------------TGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGGANGC----C-AAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATTTCA----GCATTNGTTGCAACAACAA--------------------------CCCCCCCCCCCCC---CCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT
Alignments
lowQualScore : 1 111 111111 22222222 1 111 11 111 111 777777777777777777777 111111 222 111 2222222 111 111111 2222222 33333333333333333333333333333333333333333333 1111 1111 1111
lowQualScore : 5 4 4 1 4 2 4 4 4 4 4 111 333333 4 4 4 4 4 0 4 55 5 4 4 22 77 5 66666666 5 5 0 66 1 5 5 5 000 5 5 5 5 22 5 3 1 6 6 8 77 5 5 5 5 5 5 66 5 5 3 888 77 0 3 77 0 3 111 111 99 77 000000000000000000000 3 6 6 5 5 333333 77 999 77 5 333 99 6 6 6 888 111 5 6 22 5 0 4444444 5 5 777 4 5 66 666666 4 66 4 1111111 00000000000000000000000000000000000000000000 1 7777 44 3 1 3 0 7777 3 3 666 3 7 3 3 3 1111 55 8 4444 4 55 55 4 4 8 66 4 66 8888 4 4 4 4 4 4 4
lowQualScore : . . . . . . . . . . . ... ...... . . . . . . . .. . . . .. .. . ........ . . . .. . . . . ... . . . . .. . . . . . . .. . . . . . . .. . . . ... .. . . .. . . ... ... .. .. ..................... . . . . . ...... .. ... .. . ... .. . . . ... ... . . .. . . ....... . . ... . . .. ...... . .. . ....... ............................................ . .... .. . . . . .... . . ... . . . . . .... .. . .... . .. .. . . . .. . .. .... . . . . . . .
lowQualScore : 7 4 4 1 0 0 0 0 0 0 0 000 111111 0 0 0 0 0 7 0 55 6 0 0 11 99 7 44444444 7 7 7 11 4 7 7 7 000 7 7 7 7 77 7 2 4 7 7 4 99 7 3 7 7 7 0 99 0 0 1 888 99 1 0 99 1 2 777 777 22 99 777777777777777777777 5 7 7 7 7 777777 99 333 99 7 888 22 7 7 7 222 777 2 7 00 7 1 3333333 7 0 555 4 2 11 888888 4 11 4 3333333 66666666666666666666666666666666666666666666 6 1111 66 3 4 6 4 7777 6 6 444 6 3 6 6 6 4444 55 0 0000 0 55 55 0 0 0 11 4 11 9999 4 4 4 4 4 4 4
consensus : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAGA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTG-----------TAACT-A---TGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG-AAGCCAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T-GC-A-A-CA-A--CA-A-----------C-CCCCCCCCCCCCCCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
Reference ( family-1507 ) : TAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAACTTATT-TT---TTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAGA--C-CT--------CAGTTTT-C-ACCTGCA-CAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-GGT-TTAA-GTTAATGACGTCACAA-GTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGG-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTG-----------TAACTTA---TGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-GAAAT--CTGGCAA--CTAC---T--T-GAACTGTACATATA--CTTGAGTGATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG-ANGCCAAT-CTTTTG-------TA-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT-T-C--AGCATT------NG-T--T-GC-A-A-CA-A--CA-A-----------C-CCCCCCCCCCCCCCCTGAAT----TTAC--GAA-ATCG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----TT--T-TTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTAATTT
gi|1 : CCCCCTGAAT----TTAT--GAA-ATCG-C--GATAC----TTTGTCT--AC-TC----A-T-A-TTAT--T--AAGTGAAGGGTAA----TT--T-TTCTTCAAAA-AGGGGCTATAATTTGGTTGTTAGTTTTGGAC--TTT-GAGT-TGGTT-AAGACCAATAG----TTGATAA-TGC-AT-ACAGAAAAA-TTAG---TTCAAGATCAAGTGATAATTT
gi|11 : AGGTTTTACCAT-AAAAGCT-AAATA-GA-A-TT-AAG-TTATT-TT---TTTTAA---AA-T--TGT-TG-GTGGAACACCGCATCAAA--TCGTGCA-GTTTAATTTCAGAG-ATAAT-CGTTTTCAAACA--CACTC-------CAGTTTTACAACGTGCA-CAAGCGGCCAAAACTCCTT-CT-CA-GT---GCACATTTCT-GG--AAAA-GTTAATGACGTCACAGCGTGTG-TTTACTACTTAGCG-AGTT-AAA--GGCGG-AAGATGGAAAAA-GACG-CT--CTATATTAC-GATATTTATTC--GGATCCCTCGT-TA---------T-CCACAACATAAC---AAAATTTG-GGAA--GAATCATTCTCATGTTATAACACTAATA--AATGCTGGGATGGATTGTTTTGAC-TGC---AC---ATCAAGCTAGATTC-ACTGCA--CCG-----------CA----G---TGCTCAGAACAAAATCTATTGGGAAT-A-ATCA-GAAATA-C--GCAA--CTACT--T--T-GAAattaaaaataaaaggggcggattgaaactagcacctgggctcccttcatgtattttaacaaaactttatatgaaatcgcttttaatgttcaggatttttcttgtcaaaagactttttttaaatgtcaataattagatattatgaaatgtaaattaacttcctagacctttaatatatttattgtggatatagacatttaatgttcaacattacatgtctgctgtagacagtagttatattaacaaaaatggaatatgttcagaagttttatctaataatgtgaaaattttctttcacccaatttttcagtaaacagcagaatttaggaatgatcaatttatcagccccattaaaaccagcccttcttctcctacgtcttatatgtacatgtatatagatcttatcatgcttcgattagtcctgaacgtctcgaacaaatatggaattaagtttcctgcgattttataccctttcaaaatcagtcacagattctgtatttttaaacctataccactaccttcaactgaattaataattagtcagccttctcttttgacaaacgaggcactctttcttatgtcttgtatgagggaatgcaatttgtgtggtgtgattctctggtgaggaacatccatttccacttgcaaagaatggataaatcccgacgaaatgaatatcaattaagaacacgggaattcaatagtttttcttttatctttaaattccattcgataacacaatcgggtgtgtaaactgttctcagccattatagcatggaaatgaggtaggaggatgggaaatcttcttccataaaattaaaataaatatttaaacttaaatccatttttatgaatgcctctctgtcatccttgggaactcgttgtacgggatgtatttacaccatatgcaactcaaaatttcccaaatttatttttgctcttacctactctgaatctacagtcaaaagcgtcttcgtttcacacgtgtgacgcactccagtagtttctgattttacgagcgcatcagttctgtatttactattcggacaacgtcgaattgggggtttgagcgtatatcattttacttctgatttactataaactcatatcgaact
gi|12 : aaT-AGATCATGAAATTGCTGGCAAACCTAA---TGAT-GAACTGTCCGGATAGCCTTGAGTGATCCTCGGACT-GGAG-AACCTG-TTGAACGTGGGCTCAAGGCAAAACAGT-ATTCTGGCTTCGATACTAAT-AACCT-C-ACTC--TTA-T----T-T--ATT-TATT-TACAAAGCATTTACTGATG-T--TCGC-ACA-CA-A--------------------CCCCACCCACCCTATG-AT----TTACAGGAA-A
gi|13 : CCTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTataggtgagatgtttgcaatcgacgtcacgctatttacgatgattacaaggagacggca
gi|14 : CCTCTGAAT----TTAC--AAA-ATAG-CGAGATAC----GTTGTCT-CGC-TC---AA-T-A-TTATAGTAGAAGTG-AGGGT-A----CT--T-TTG----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTCT-GAGTATG--C-AAGAC--ACAGAACTTTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTGGTTATTTctaaaaataaaaaggggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : GTT-AA-TA-TGCA-TT-AA-CTTAAT-TT---TTT--A---AAATA-TATGTG-GTGGAAACTCG-ATCAAAATCTGTGCA-GC--AATTTCA-----------GTTTTCAACGG--G-CA--------TA--TTT-T-A-----A-AAAGTGGCCTATA-TCCTC-----A-GT---GCA-ATTTCT-AGTGTTAA-GTTAATGACGTCATAC-GTGTG-TTT--TACTTActaaaaataaaaagggggattaaaattagcatctgtactcccttctggatttaacaaaatttgaa
gi|15 : -TTATTC--GGATCCCTCGT-CAAATCATGGTT-TGTTAGCATATC---AAAATTTGttcggatccctcgtcaaatcatggtttgttagcatatcaaaatttg
gi|16 : gttaatatgcattaacttaattttttaaaatatatgtggtggaaactcgatcaaaatctgtgcagcaatttcagttttcaacgggcatattttaaaaagtggcctatatcctcagtgcaatttctagtgttaagttaatgacgtcatacgtgtgttttacAAAGAT-AAACCACCGAGGTTTTAC-AT-ACAAGCT-AA-TA-TG-A-TC-AAGCTTATT-TTT--TTT--A---AA-TA-TGT-TG-GTGGAGACCCG-ATCAAAATCCATGCA-GT--AATTTCAGAG-ATAAT-CGTATTCAAAGA--C-CTCATGCATGCAGTTTT-C-ACCTGCA-TAAGCGGCCCATA-TCTTT-CT-AA-GT---ACA-ATTTCC-GGT-TT
gi|19 : T-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AACTA-TG-A-TC-AAACTTATT-TT---TTT--TTTTAA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-CTTA
gi|2 : gtAT--TTTG--TTTTAG-TTCGGAT-TTTTTGAGTGTG--C-AAGAC--ATAG----TTGAT-A-TGC-AT-A-AA-ATAA-TAAAATTTTCATGATTGAGGGGTAATCTc
gi|2 : AAT-A---T-GGATTAATTTA-G----TTG--AAA-TATT-T-T----CATT------TG-TAGT-GG-A-A-CG-ATTCA-C-----------C-CCCCCCCCCCCCCCCCCAACCATGCTAT--TAA---CG-TGAGAAAC----A--GTTTACAC-------A-T-A-TTGTAATCGAA-TG--GAGT-A----Tataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|2 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttAG-GTGAATGACGTCACAA-GTGTG-tgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctcacacttgtgacgtcattcacctcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|20 : attttgttttagttcggattttttgagtgtgcaagacatagttgatatgcataaaataataaaattttcatgattgaggggtaatctataaagagggggggggggggggctgtaatttaccataatttaaataaaattgctcctaatgttaccagtatttttgtcaaagaaatccttatgtcaaaaattaaatattattaatataattaactttttatgcaccttatattaattattgtggatatattgagcaacatcaaatcatatactgcagacgacgggtaagttggcaacacaactgaaatatttcagaaaagttttgtctaaattacgtgaacaaatttcattcacctagcagaaagttaaataatctgtctattggcccgattaaaaccagcccctcttctcctatcgtcttatatatgcattcgataggaaccgtttctcaaacagaatataataaagttttccgcaaatttgattgctttatttttaattatcaaactactcaactaaattaaataattatgccagccttctctttggacaaacgcaggacgattttattatgttgcaagggacgcactgttttgttggtgcgatttccccggtgtggaacatccattccctagcaaagaatgatatgtcccggcagaataaatattaataaagaagacggaattataatagctttttgttattttatactccattcgattacaatatgtgtaaactgtttctcacgttaatagcatggttgggggggggggggggggggtgaatcgttccactacaaatgaaaatatttcaactaaattaatccatatttgtgaaattcgtgtatgctgcaacttaattataagttcccaagatattttgctctacacattccagtcaaaagcatcgtctTAAAGAT-AAGCCACAGAGGTTTTAC-GT-GCAAGCT-AA-TG-TC-A-TC-AAACTTATT-TT---CGT--A---AA-TA-TGC-TG-A-GAAAACCCG-ATAAAACTCCGTGCT-GT--TATTCCCGAG-ACAAT-CGTcttatctggtatttccataattttacagagcgcagtaggtgtgtattggctaattttaacattatctcggtatagcggtcgaatttggggttgaattgcatattattttactcgtgattatgaacgctatcgaacttacttaatatgtgaaatctccca
gi|21 : aAAGTT-AAACTACCGAGGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTTATT-TTTTTTTT--A---AA-TA-TGT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAT-C
gi|22 : --AGCATT------AG-T--T-----------------------------T-CCCTCCCTTTTCATCTAAAT----TTAC--GAGCAT-G-CAAGATACGTATGTTGTCT-CAT-TG---GA-T-G-TTA---CAGAAGAG-AAAGT-C----TT--TATTC----AAA-A--GCTTA
gi|26 : attgaCAAT-CTT-----------A-TAAT-A---A-TGATTA--TTA-T----T-GTTATT-TATT-T-T----CATT-------G-T--T-AT-A-AGCATA--CATA-----------C-ACCCCCCCCCCCCCCGGA
gi|29 : TTAAAATTGG-GA-AAACTG--AATA-GGCG-GTGCTTATATCAC-TATG-TTGTTCTGTGAACCCTCGC-CAAATGATcccttgtaaatatgtg
gi|3 : TACT-AG-G-AGTTAAA---GGCGA-AGAGTGGAAAAA-TACG-CTGCTTGTATAAC-GATA-TTATTC--TGATCCCTAGT-CAAAAGATGGTC-TGTTAGGACATC---AAGATTTGAGGAA--GAATCATTTCCATGCCATGATACAAATA--AATCCTGGGATGGATTGTTTTGACTTGA---GC---AT--AGCTAGATTCAACTGCAAGTTG-----------TCAGTTAG--TGCTCAGAAAAAAA-ATATTGGG-AT-AGATCA-TAAAT--CTG-CAA--CTATACTT--T-GAACTGTGCATATA--CTTGAGTGATCCTCAGA-T-GGAG-ATTCTGGT-GAA---GGGCTTGAGG-ATGCCAAT-ATTTTG-------TG-TAAT-A---T-CAATTG--TTA-A----T-G--ATT-TATT---C--AACATT------TG-T--T-GC-A-AACA-A--CA-A-----------C-CCCCCAT--------TGAAT----TTAC--GAA-GTAG-CGAGATAC----GTTGTCT-CGC-TC---AA-TTA-TTATAGCACAAGTG-AGGGC-A----TT--TCTTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C-GAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGATTTTCAAGATCGAGTTATAATTT
gi|31 : tg-TGTTAGCTCATC---AAAATTTGAGGAA--GAATC--------------ATACAAGTA--AATGCTGGGATGGGTTatttttaaagtgttgaaactagcacctgtgttctcttctgtatttatcaacatttatactaaatcgcttttaatgttatccagatttttctttttcaaagattttttatatgtcaaaaatttagatatgaatgtaattaacttcctatgcacctgatacatgtataattgtggatatataggcctatttaatgttcaacatacatgtaggcctacgctgcataagaccagtattaagttagtaacaaaactgaaatatttcagagaagttttatctaaattacgtgactgaaaaatttcatgttcaccaaatctatccgctaaaagt
gi|4 : TAAAGAT-AAACTACAG-GGTTTTAC-AT-AAAAGCT-AA-TA-TG-A-TC-AAACTGATT-TT---TTT--A---AA-TA-TAT-TG-GTGGAAACCCG-ATCAAAATCCGTGCA-GT--AATTTCAGAG-ATAAC-CGTATTCAAACA--C-CT--------CAGTTTT-C-ACGTGCA-TAAGCGGCCCATA-TCCTT-CT-AA-GT---GCA-ATTTCT-AGT-GTAA-GTTAATGACGTCACAC-TTGTG-TTTACTACTTAG-G-AGTTAAAA--GGCGA-AGAGTGGAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTAGCACATC---AAAATTTGAGGAA--GAATCATTTCCATGCCATGATACTAATA--AATGCTGGGATGGATTGTTTTGACTTGA---AC---AT--AGCTAGATTCAACTGCA--CTGTAAGTCAGTGCTAACTTACAGTGCTCAG-AAAAAA-TTATTGGG-AT-AGATCA-GAAAT--CTGGCAA--TTAC---T--T-GAACTGTACATATA--CTTGAGTAATCCTCAGA-T-GGAG-AATCTGATTGAA---GGGCTTGAGG-AG--CAAT-CTTTTGT------TA-TAAT-A---TGCAATTA--TTACA----T-G--ATT-TATT-C-A--AGCATT------TGCT--T-GC-A----A-A--CA-AACCCCCCCCCCC-CCCCCCCCCCCCCCCTG-AT----TTAC--TCA-ATCG-CGAGATAC----GTTGTCT-TGT-TC---AAGTGA-TTATAGTAGAAGTG-AGGGT-A----TT--T-CTC----AAA-AGGGCTTAT--TTTG--TGTTAG-TTTGGAC-TTTT-GAGTATG--C--AGAC--ATAG----TTGAT-A-TGCAATAA-AG-ATAA-TTAGATTTC--AGATGAGGTGGTAATTT
gi|5 : AATCTCCAAGGTTTTAC-ATTACAAATT-AAATACTG-AATC-AAAATTATT-TT---TTTTTA---AA-TA-T-T-TGCGTGGAAACCAG-ATCAA--TCCGTGCAAGT--AATTTC-GAG--TAATTCCTATTCAAAGAAAC-CT--------CAGTTTT-C-ACCTGCA-CAAGTGGCCCATACTCCTT-CTTAACGTATGGCA-ATTTCT-GGT-TTTATGTCAATGACGTCACAA-GTGTGTTTTACTAC-TAG-G-AG-TAATA--GGCGGCAGAGTGAAAAAA-GACG-CTGCTTATATTAC-GATA-TTATTC--TGATCCCTCGT-CAAATGATGGCT-TGTTAGCGCACCTCGAAAATTTGAAGAAAGGAATCGATTCCATG-CATGATACTAATA--AATGTTGGG-TGGATTGTTTTGACTTAACCTGC---AT--AGCTAGATTCAACTGCA--CTG-----------TAACT-----TGCTCAATACCAAA-ATATT-GG-AT--GATCA-GAAAT--CT-GCAA--CTACT--T--T-GAACTATACATATA--CTTGAGTGATCCTCAGA-T-GGAG--ATCTGATTGAA---GGTCTT-CGG-AAGCCAATGCTTTTG-------TA-TAAT-ATTTT-CAA-TG--TTA-A----T-G--ATTGTA-T-T-C--AG-ATTA-----AG-T--T-GCAA-A-CA-A--CA-A-----------CACACCCCCCCCCCCCTTGAAT----TTG---GAA-ATCGCCAAGATAC----GTT-TCT-TG--TCAAAAA-T-A-TTATAGTA-AAGTG-AGGGT-AT---TT--T-TTC----AAACAGGGCTTAT--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAAG--CAAAGAC--ATAG----TTGAT-A-TGC-AT-A-AG-ATAA-TTAGACTTTCAAGATCGAGTGGTAATT
gi|6 : ttTAAAGATTAAATCTCCAAGGTTTTAC-AT-ACAAA-T-AG-TA-TG-A-TCCAAAATTATT-TT---T----A---AA-TAATGT-TG-GTGGAA-CCAG-ATCAAAA-CCGTGCA-GT--AATTCC-GAGCATAAT-CATATTCAA-GA--C-CT--------CAGTTTT-C-ACCTGCAACAAGTGGACCATA-TCCTTTCT-AA-GT---GCA-ATTTCTTGGT-TTAT-GTCAATGACGTC-CA--GTGTG-TT--CTACTTAG-GGAGT--AAA--GGCGG-AGAGTGAAAAAAAGACGGCTGCTTATATTACCGATA-TTATTC--TGATCCCTCGTTCAAATGATGGCTCTGTTAGCGCATC---AAAATTTGAAGAA--GAATCATTTCCATGCCATGATACTAATA--AATGTTGGTATGGA-TGTTTT-ACTTGA---ACCTGCT--AGCTAGATTCAA-TGCA--CTG------------AAC------TGCTC-CAAAAACA-ATATTGGG-ATAAGATCA-AGAA---CT-GCAA--CTACCT-T--T-GAACTATACAT-TA--TTTGAGTGATCCTCAGA-TCGGAG-AATCTGA-TGAA---GGTCTTCAGG-AAGCCAAT-C--TTG-------TA-TAATGA---T-CAA-TG--TTA-AG---T-G--ATT-TATT-TAC--AGCATT------AG----T-GC-A-A-CA-A--CA-ACAAC-------C-CCCCCCCCCCCCCCTTGAAA----TTGT--GAA-ATCG-CAATATAC----G-TGTCT-TGCTTC---AA-T-ATTTATAGTAGAAGTG-A-GGT-A----TT--T-TTCCA--AAA-GGGGCTTAC--TTTA--TGTTAG-TTTGGAC-TTTT-GAGTAT---C-AAGAC--ATAG----TTCAT-ACTGC-AT-A-AG-ATAATTTAGACTTTCAAGATCGAGTGGTAA
gi|7 : -AAGCCACAGAGGTTTTAC-AT-ACAAGCTTAA-TA-TC-A-TC-AAACTTATTGTT---CTT--G---AA-TA-TGC-TT-GTGAAAACCCG-ATCAAAATTC---------------CCGAG-ATAAT-CGTATTCAAACA--C-CT--------CAATTGT-C-TCCTGCA-TAAGCGGCCGATA-TCCTT-TT-AA-GT---GCA-ACTTCC-GGT-TTAA-GTTAATGACGTCATAA-GTGTG-TTTACAACGTAG-G-AGTT-ATA--GACGG-AGAGTGCAAAAA-GACG-CTGCTTATATCAC-TATT-TCATTC--TGATCCCTCCT-CAAATGATGGCT-TGTTATCACATC----AAATTTGAGGAA--AAATCATCTCCATGCCATGATACTAATGGTAATACTGGGGTGGGTTGTTTTGACGTGA---AC---AT--AGCTAAATTCAACTGCA--CTa
gi|7 : A--CTG-----------TAGCT------GCTTAGAAAAAAA-ATATTGG--AT-AAATCA-GAAAT--CTG-CAA--CTAT---T--TTGAATTGTAC--------TTGGGTGATCCTCAGA-T-GGGGGAATCTGAT-GAA---GGGCTTGAGA-AAGCCAAT-CTTTTG-------TA-TGCT-A---T-CAATTG--ATA-A----T-G--ATT-AATT---C--ACCATT------GC-T--T-GC-A-A-CA-A--CA-A-----------A-CACCCTAT-------TGAAT----ATAC--AAG-ATCG-CGAGATAC----GTAGTCT-CGC-TG---AA-T-A-TTATAATAGAAGTG-AGGGT-ATTTTTT--T-TTC----AAA-AGGGCTTCT--TTTG--TGTTAG-TTTGGAC-TTTTAGAGTaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattgactgtagctgcttagaaaaaaaatattggataaatcagaaatctgcaactattttgaattgtacttgggtgatcctcagatgggggaatctgatgaagggcttgagaaagccaatcttttgtatgctatcaattgataatgattaattcaccattgcttgcaacaacaaacaccctattgaatatacaagatcgcgagatacgtagtctcgctgaatattataatagaagtgagggtatttttttttcaaaagggcttcttttgtgttagtttggacttttagagt
gi|8 : aagccacagaggttttacatacaagcttaatatcatcaaacttattgttcttgaatatgcttgtgaaaacccgatcaaaattcccgagataatcgtattcaaacacctcaattgtctcctgcataagcggccgatatccttttaagtgcaacttccggtttaagttaatgacgtcataagtgtgtttacaacgtaggagttatagacggagagtgcaaaaagacgctgcttatatcactatttcattctgatccctcctcaaatgatggcttgttatcacatcaaatttgaggaaaaatcatctccatgccatgatactaatggtaatactggggtgggttgttttgacgtgaacatagctaaattcaactgcactaggggacggggattcgcaacccccacattatcaaagtcgggatttactataaacattg-CAACTG--TTA-ACATCT-T--ATC-AATTGT-T--AGCATC------AG-T--T-GC-A-A-CA-A--CA-A-----------C-CCCCACTCCAACCCTTGAAT----TTGC--GAG-ATCG-CAAGAAAC----GTTGTCT-CAC-TG---AA-T-A-TTTTAGTAGAAGTG-AGGAT-A----TTTAT-TTC----AAA-AGTGCTTAT--TTAG--TGTTAG-TTTGGACTTTTT-GACTATA--C-AAGAC--ATTG----TTGAT-A-CGC-AT-A-AC-ATAA-GCAGATTTTCAAGATTGAGTGGTAATTT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GGTGTTGAACGTCTATTCCCTCACAAAGAATGATACGTTCCAGTGAACTGAATATCAATTAAGAACACAGAATTCCAGTAATTTTTCGTTATTCTAAACTCCAATCGATAACAATCGTGTGTAAATTGTTACATAATAGCATGGATTGAGGGGGGGGGGGGGCTGTAAAAGATCTTTTCCGCTAAAAAAATAGAATTATTTCAACTAAAATTAATCCATATTCTGACGAATGCTGCTCTGTCATCCTTGGGAAATTCGTGTAAGGACACATAATCATATTTGAGGATGTACACCATGCTGCAACTCAAGATTTTCCAAGATAGTTTGCTCTAGAAACTCATGAAACTACAGTCAAAATCGTCTTTTTTTCAAATTTGTGTCGTCATTCACGTCATATCTAGAATTTCTGAATTTATACTGAGCATACCAGGTGTGTTTTCGCTTTTTTTAAACATTATCTCTGAACAGCAGTCGAACTGGGGGTTGAGGTGCAAATACTTTACTCGTGTTTATGAACGATATCGAACTTAGTTAATATGTGAAATCTCCCAA
Unaligned ( gi|10 ): TACTCCTCATTATTTTAAATTCCATAACAATTGTATGTAAACTGTTTCTCACATTAATGGCATGGATTGAAGGGGGTTGCAGATCTTTCCGCTAGAAATTAAAATATTTCAACTAAATTAATACATATTTGACGAATGCCTGCTCATTCATACATGGGAAACTCATGTAAGGACACATAATTATATGTGAGGATGCAACTCAAAATTTCACAAGACATTTTGCTCTATTGACTCATGACACTACAGACAAAAACGTCTACATCTCACACTTTTGACGTCATTCACGTCATATCCGGTATTTATGTATTTTTACTGAGCGCATCAGGTGTGTATTAGCTGTTTTTAACATTATCCGGAACAGCGGTCGAATTGGGGTGGAGGCGTGAGCTGCATATCATTTTACTCCTGATCAAAAACGTTATCGAACTTAGTTAATATGTGAAATTTCCCAAG
Unaligned ( gi|17 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTTAACATTATCTCGGGACAGCGGTCGAATATGGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|18 ): ACATACTCATGAAGCGTCTTCTTCACACTTATGACGTCATTCACGTCATATCCGGTATTTCTGTATTTTTACAGAGCGCATCAGTGTGTATTTACTATTTTAACATTATCTCGGGACAGCGGTCGAATATGGGTGCATATCATTATAAACGCTATCGAACTTGATTAATATGTGAAATCTC
Unaligned ( gi|23 ): ATTATCTTGAAATAGCGTTCGAATTGGGGATTGAGCTGCATATAATTTTACTCAAGCTCATATATATATATATAAACGCTATCGAACTTAGTTAATATGTGAAATC
Unaligned ( gi|24 ): GTCAGTGTGTAATCGCTATGTTTAACATTATCTCGAATAGCGCGTCGAATTGTGGATGAGCTGCATATCATTTTACAGCGATTTATAAACCTATTGAAATTATTA
Unaligned ( gi|25 ): CAGTGTGTAATCGCTCTTTTAACATTATCTCGAATAGCGGTCGAAATTGTGGTGAGCTGCATATCATTTACAGGCGATTTAAAACTCTATTGAAATTATTAT
Unaligned ( gi|27 ): GACATCATATCGGGTCGTACTAGGGGGTTGAACCGCAAATAATATTGCTCGTGTGTTTAAAGCTATCAAACTTAATATGTATAAT
Unaligned ( gi|28 ): GTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
Unaligned ( gi|30 ): CAACGCACGAGGGCGGGGGGGGGGTCGCAACCCTACACTATGATTAAAGGTCGGGATTTACTCTGAACAT
Unaligned ( gi|32 ): GGGGGGGGGGGGGGGGGGTGAAGCGAGACTACGAATAAAAGTAT