lowQualScore : 22 1 22222222 1111 1111 11 1 111 1 222222222 111 1 1111 1 11 1111 111 1111 11111 11 22222 2 1111 1 1 222222 11 33333333333 2222222 333333333333 11 777777777777777777777777 11 55555555555555555 1111 222222222 2222222 1 22222222 11111111 1 1111 1111 111 3333333333333 111 222222 11 1 11 1 11 22 1 1 111 333333 11 22222
lowQualScore : 22 3 77 00000000 5 5 5555 5 3333 4 5 5 5 88 77 1 1 222 1 000000000 5 5 6 777 66 0 9999 5 9999 0 2 2 5 5 5 33 6 6666 5 5 5 1 777 1 5 8888 5 5 44444 00 6 9 6 99 6 6 8 8 0 00000 3 7777 0 0 6 333333 8 11 8 99 99 6 88888888888 9 1111111 000000000000 8 11 2 6 222222222222222222222222 88 44444444444444444 0000 666666666 99 4444444 5 5 7 11111111 5 66666666 2 1 77 2222 5 0 999 5 3333 6 99 999 9999999999999 777 333333 66 1 6 3 6 3 00 5 99 6 66 5 0 6 333 333333 4 6 6 99 11 1 33333
lowQualScore : .. . .. ........ . . .... . .... . . . . .. .. . . ... . ......... . . . ... .. . .... . .... . . . . . . .. . .... . . . . ... . . .... . . ..... .. . . . .. . . . . . ..... . .... . . . ...... . .. . .. .. . ........... . ....... ............ . .. . . ........................ .. ................. .... ......... .. ....... . . . ........ . ........ . . .. .... . . ... . .... . .. ... ............. ... ...... .. . . . . . .. . .. . .. . . . ... ...... . . . .. .. . .....
lowQualScore : 55 3 99 77777777 7 7 4444 7 9999 3 7 7 4 33 99 4 4 444 4 444444444 0 0 0 111 99 0 4444 0 0000 7 7 1 7 7 7 66 0 4444 7 7 7 7 999 4 7 0000 7 7 88888 33 7 0 7 22 7 7 0 0 8 00000 0 0000 0 0 0 000000 0 00 0 00 22 7 33333333333 0 7777777 000000000000 0 00 8 0 111111111111111111111111 33 33333333333333333 0000 777777777 22 2222222 7 7 1 00000000 7 77777777 4 4 99 1111 7 1 444 7 4444 7 22 222 6666666666666 000 000000 55 7 7 2 0 0 00 5 88 0 55 5 0 7 000 333333 2 7 7 22 33 7 55555
consensus : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCGTC--CGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTNCGTAAATA-GATCA--C-ACGT-ATGGAC-AAA-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATT--C-CTTGTGACGCANTGNAAT-ACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AA-NGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGT-A-CAGT-----GCGTGCTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAAA-------ACTTAC----CATG---CGAG-AC--GAACGATCG--GT-TTTGAGGTT---------AGTAAAAACCCACCGTGTAG--AGCC---------------TTTGAAA--G-AT---------ATTAC--C---C---AAAGA-TTCAATC-ATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA--AG----TTA-CAGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------TCA-CGAACG-T-GTTGT------TAGA-AAAAAACA-TCCGAATCTCGAGAGACANACATGAAAA-AGCGTG-TGGCACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
Reference ( gi|4 ) : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCGCT--CGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCTATAAATA-GATCA--T-AGAT-ATGGAC-AAA-TGGCACT--AC--GTATTATAAT-TA----GATGTGACGT-AATATT--C-CTTGTGACGCATTGAAAT-ATG-TCAGTTTGT--ACGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AA-TGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGAAGTTT-GG--GACTAAATA-GG-TGT-A-CAGT-----GTGTACTG----TAATAAA-GC-GATATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAGA-------ACTTAG----CATA---CGAG-AC--GAGCGATCA--GT-TTTGAGGTA---------AGTAAAAACCCACCGTGTAG--AGCC---------------TGTGAAA--G-AT---------ATTAC--C---C---AAAGA-TTCAATC-A-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA--AG----TTA-CAGTT--AAAAGA-TG-TTCGTTC-CG--TAA-T-AAATA---------TCA-CAGACG-T-GTTGT------TAGA-AAAAAACA-TCCGAAT-TCGAGAAACGAACATTAAAA-AGCGCG-AGACATGGGCTAG-AGGAAA-AAGAC-ATT------GGAAA-GTTG-AT--AATGATTGGAACCGTTGTGATATT
gi|1 : GGTGGATCATTTAATATGTAT--AAAACA--------AA-TGCGCGTC--CGTGGT--GGTCA-CTCGTG-AAATTTCAAACTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCA--T-ACATTATGGAC-AAA-TGACACCCAAC--GTATATTAATCTACGG-AATGTGAC-T-AATATT--CTCTTGTTACGCACTGTAATTACG-TCAGTTTGTC-ATGTAAATCC-AGAGG-ATGGGG-AA-GTCGAAA-ACTTATCACCAA--CTAAAAC-AAACGGGTTGTAAATAGCTT-TC-AAAGTGGAA-T---AAGCAGTC-TGATATC-CCAGGAGTTTGGG--GACTAAATA-GGTTGT-ATCAGTCTGGCGCGT-CTGATCTCGATAAACGCTGGTGTATTTGGTAGGAGACAGGGTTCAGCGTGGAA-AGT-CAGCCTGACAGGACGGAACGGAAGGTATTGGACGTAAAGAATCTTTCACTTGACCGCCACGTGTCGAG-ACAGGAGCG-TCA--GTCTTTCAGGCAACTTGTGTTAGTAAAAACCCATCGTGTAGGCAGCC---------------CTTGAAT--GTATCTGTAGTGAATTAT--CG--C---AAAGA-CTTCATC-ATGTTC-----AATG-A-AAA----AC--ACTGTTTCAAGA--AG----TTA-C-GTA--AAAGGA-TGTTTTGTTCTCGTTTAA-TAAAATA----------CACCAGACGTT-GTTGT------TAG----AAAACATTCCGAATCTCGAGAGACACACATGAAAT-AGCGTG-TGGCATGGGCTAG-AGGAAA-AAG-C-A-T------GGAAA-GTTG-AT--AATGACTGG-ACCGTGTTGATATT
gi|9 : gcGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCGTC--CGTG-T--G-TCGGCTCGTG-AAAGTTCAA-CTTTTTTA--TTTACTTTTTAATCC--TCTTTAAAT-GCATGTGTCCATAAATA-GATCA--T-ACAT-ATGGAC-AAA-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATT--C-CTTGTGACGCATTGAAAT-ACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAACGATTTATCACCGAGCTTAAAAC-AA-AGGGTTGTAAATAGCTT-TC-AAAGTGGAATTTTAAAGCAGTC-CGATATCTCCAGGAGTTT-GG--GACTGAATAGGG-TGTCA-C-GT-----GTGTGCTG----ttctgatgaattgtaaagtggtaattgacaaaataaccgcgctcatcaatgtggcggaagcgccttgagacagagtggtttgccccatttgcattagtcccggtacggtgcggctaagt
gi|8 : cGGTGGATCATT-AATATGTAT--AAACAA--------A--TG-GCGCCTCCGTG-T--GGTCA-CTCGTG-AA-TTTCAA-CTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCA--TTACAT-ATGGAC-AAA-TGACACC--AC--GTATTATAATCTACGGGAATGTGACGTCAATATTTCT-CTTGT-ACGCACTGTAAT-ACGTTCAGTTTGTTCATGTAAAT-C-AGAGGTATGGGGAAA-GTCGAAAGATTTATCACCAA--CTAAAACAAA-CGGGTTGTAAATAGCTT-TCAAAAGTGGAATA---TAGCAGTCTTGATATCGCCAGGAGTTT-GGGTGACTAAATA-GG-T
gi|14 : agcGGTGGATGAT--AAAAT-TAT--AAATAA--------AAACG-GCATT--CAAA-T--G-TTGGCAAGTG-ATATTCCAA-CATTTAGA--TTTCCCTTTTAATCC--TCCTGACAC-ACGTGTGTACGTAAATA-GATCACGC-AAAT--TGGTA-AGA-TGACACC--AT--GTATTACACT-TA----GATGTGACGT-TATATT--T-CTtgt
gi|17 : agtGGTGGATCAT--AATAT-TAT--AATCAA--------AA-TT-GCGTC--CGAG-T--G-TCGGCTCGTG-GAATTTCAA-C-ATTTTA--TTTACATTTTAATCC--TCTTTA----------------AAATA-GATTA--C-ACTT-ATGAAC-ATA-TG
gi|19 : cGATCATG-AATAC-TGTCGAGACAATTGGCAAAAA-TG-GCGTC--CGTG-TTGA-TCGGCTCGTGAAAATTTCAA-CTTTTTtatgatggcatatttctgccaccac
gi|21 : T--AAACAA--------AA-TG-GCATC--TATA-T--A-TCGGCTCATG-AAATTTCAA-CATTTTTA--T
gi|10 : gTTTTAATCC--TCTTTAAAT-GCATGTGCACGTAAATA-GATCA--C-ATGG-ATGGGT-AAAATGACACC--TT--GTATTATAAT-TA----GATGTGACGT-AATATT--C-CTTGTGACACAATAAAAT-A-G-TCAGTTTGT--ATGTAAA--C-AGAAA-ATGAGG-AA-GTCCAAAGATTTATTACCAAG---------AA-T----TGTAGGTAGCTT-TC-AAAGTGGAAAT---AAGCAATC-CGATATTGCTAGCAGTTT-GG--GACTGAACA-GG-TGT-A-CAGT-----
gi|11 : TTTA-TCCATTCTTTAAAT-GCATGTGCACGTAAATA-GATCA--C-ATGG-ATGGGTAAAA-TGACAC---ACTTGTA-TATAAT-TA----GATGTGACGT-AATAT------TTGTGACACAAT-AAAT-A-G-TCAGTTTGT--ATGTAAA--CAAGAAA-ATGAGG-AAGGTCCAAAGATTTAT-ACCAAG---AA-----------TTGTAGGTAGCTTGTC--AAGTGGATAT---AAGCAATC-CGATATTG-TAGCAGTTT-GG--GACTGAACA-GG-TGT-A-CAGT-----tcgt
gi|15 : AC-ATA-TGACACC--AC--ATCTTATAAT-TA----GACATAACGT-AATATT--C-CTTCTGACGCATTGTAAT-ACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ACGGGG-AA-GTCGAAAGATTTATTGCCGAGCTTAAAAC-AA-AGAGTTGTAAATAGCCT-TG-AACGTGtcgt
gi|13 : cagaaatatgccatcatGACACC--AC--ATATTATAAT-TA----GATGTGAAGT-AATACT--C-CTTGTGACACATTGAAAT-ACG-TCAGTTTGT--ATGCGAA-----GAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AA-AGAGTTGTAAATAGCTT-TC-AAAGGGGAATT---AAGCAGTC---------CCAGGAGTTT-GG--GACTAAAGA-GG-TGT-A-CAGT-----GTG
gi|7 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAAA-------ACTTAC----CATG---TGAG-AT--GAACAATC------------------------AGTAAAAACCCTCCATGTAG--AGCC---------------TTTGAAA--G-AT---------ATTAC--C---C---AAAGA-TACAATA-A-TTTC-----A--G-AGAAA----AT--ACTGCTTC-AGA--AG----TTA-CAGTG--AAAAGA-TG-
gi|6 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--C-TGGAGAAACAAAGCCT--C-GAACGGGAAGGAAGA----------AAAAA-------ACTTAC----CA-G---TGAGAAT--GAACAATCA--G---------------------ATAAAAACCTCCTATGTAG--AGCC---------------TTTGAAA--G-AT---------A-TAC--C---CACAAAGGA-TACAATA-ATTTTC-----A--GAAGAAA----ATTGACTGCTTC-AGA--AG----TTA-CAGTG--AAAAGA-TG-AT-------G--GAA---AAACA---------TT--CGAAC---------------TAGAGAGAAAGCA-T------------AAA--------AAA---GCGTG-TGAC-CGGGCTAG-AGGAAA-GAGGC-ATTCGCGAGGGGAA-GTTG-AT--GGTGACAGGAACC--CG-GATATTatggaaaaaacattcgaactagagagacaagcataaaaaagcgtgtgacacgggctagaggaaagaggcattcgcggggaagttgatggtgacaggaaccctgggatattttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|20 : ----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGT-------C-TCGCCT--C-GAACGGGAAGGAAG-----------AAAAA-------ACTTAttctgatgtaatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaaagtagtgtgttgccccaatgcattagtcccgggtgtgatgggccaggt
gi|12 : TATAT------GGAAAGA-GGTTC--CGTGGAG-AAC-AAGCCG--C-GAACGGGAAGGAAG-----------AAAAA-------GGTTAG----CATG---CGAG-AC--AAACGATCA--GT-TTTGAGGTT---------AATAAAAACCCATCGTGTAG--AGCC---------------T-TGAAA--G-AT---------ATTAC--C---C---AAAGA-TTCAATC-A-GTTT-----G--G-AGAA--------------------A--AG----TTA-CAGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAGT
gi|3 : AGCCT--T-GAACGTGAAGGAAA-----------AAA-A-------ACTTAC----CATG---CAAT-AC--GAACGTTTGAGGT-TTTGAGGTT---------AGTAAAAACCCACCTTGTAG--AGCA---------------T-TGAAA--T-AT---------ATTAC--C---G---AAATA-TTTAATC-A-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA--AG----TTT-CAGTT-----AGA-TG-TTTGTTC-CG--TAA-T-AAATA---------TCA-CAAATG-A-GTTGT------TAG--AAAAAATA-TCCGAAT-TCGAGAGACAAACATg
gi|5 : ---------AGTAAAAACGCATCGTGTAGGCAGCCCTTAGAATGTACTGCTGTGACGTTG-AA---------ATTATGTCGGGC---AAAGACTTCAATC-ATGTTC-----AT-G-AGAAA----ATC-ACTGTTTC-AGA--AG----TTA-CG--T--AAAAGA-TG-TTTGTTC-CG--TAA-TTAAATA---------GCA-CAGACG-TTGTTGT------TAGA-AAAAA-CA-TCCGAATCTCGAGAGACGCACATGAAAATAGCGTGTCGGC-TGGGCTAGAAGGAAACAAGCA-ATT------GG-AA-GTTG-AT--AATGAT--GGACCGTGTTGATATTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccatttgaaagttgataatgactggagccgtgtgatattttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|2 : ttAAAA-TTTAATCCA-GTTCTTTGGA--G-AGAAATAAAAT--ACTGATTCTAGACTAGAGATTTACCAGCTTAAAAAGACTG-T--GTCC-CG--TAACT-AAATGATTTCGTGCTCA-AGAACG-T-GTTGTATAAGATAGA-AAAACACA-cttctgatgaaatgtaatagtggtacttggacgaaaataaccgcgtcacaatggtgtgcggaagcgcctctggagcagagtgggtttgccccaattttttttgcattagccggctctgcgggctcacggtccatgagcatgatgctttgggggtgtatctgcttgaatggaccaggtatctctttgcacagttgctgtaatggctaactataaacgcccagagataaacatagaaaatcatagacaatgaattgtggccagttgtctgcaaggcattcagttcctagaacga
gi|7 : gGG-AAAAAACA-TTCGAAC-TAGAGAGACAAGCATAAAAA-AGCGTG-TGACACGGGCTAG-AGGAAA-GAGGC-ATTCGCG--GGGAA-GTTG-AT--GGTGACAGGAACC-CTGGGATATTgaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataacaaaagacgattggaaaagttgtatgaaatggctggaaccgtgtgatattttctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|3 : gtaataaagcggtatgtggagagaggttccgtggagaacaagcctcgaacgggaaggaagaaaaaacttaccatgtgagatgaacaatcagtaaaaaccctccatgtagagcctttgaaagatattacccaaagatacaataatttcagagaaaatactgcttcagaagttacagtgaaaagatgatAA-AACCC-ATT------TGAAA-GTTG-AT--AATGACTGGAGCCG-TGTGATATTttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|2 : agccttgaacgtgaaggaaaaaaaacttaccatgcaatacgaacgtttgaggttttgaggttagtaaaaacccaccttgtagagcattgaaatatattaccgaaatatttaatcagttcagagaaaatactgtttcagaagtttcagttagatgtttgttccgtaataaatatcacaaatgagttgttagaaaaaatatccgaattcgagagacaaacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-AAGACGATT------GGAAAAGTTGTATGAAATGGCTGGAACCG-TGTGATATTttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CCAGAGCATGATGCTTTGGGGGTGTATCTGCTGTGAATGGACCAGGTTATCTGTTTGACAGTGCTGTAATGGTAACTATAAACGCCCAGAATACATAGAAATCATAGACACATGAATTGTGGCCAGTGTTGCCAGGCATTCGTTCC
Unaligned ( gi|18 ): TAATATTCCTAAAACTTGAAAGACAACACTTGTGACGGGAAGTTTGCATATGTATGGTGGCATATTTCTGCCACCA
Alignments
lowQualScore : 11 1 11111111 1111 11 1 1 1111 11 1111 111 1 11111 111 1 1111 111111 33333333333 2222222222 111 444444444444444444444 11 444444444444444444444444444444 1111111 1 11111111 11111111 1 1111 111 22222222222 222222222222222 222222222222222222 1 222222 11
lowQualScore : 99 1 66 88888888 5 5 66 5 0000 2 5 5 3 55 66 0 0 2 1 0 5 888 4 4 4 66 66 8 7777 4 4 5 1 1 5 4 5 11 3333 5 5 5 0 222 3 0 4 0 5 5 00000 77 4 5 77 5 5 6 6 111 3 4444 8 8 999999 6 99 6 6 77 5 22222222222 5 5555555555 1 111 6 99 3 555555555555555555555 1 55 2 777777777777777777777777777777 77 9999999 5 2 77777777 5 22222222 1 0 0000 66 5 777 5 5 8 5 66 000 0 33333333333 5 0 5 111111111111111 555555555555555555 1 1 8 8 0 8 5 6 5 888888 2 5 5 77 5 44 1
lowQualScore : .. . .. ........ . . .. . .... . . . . .. .. . . . . . . ... . . . .. .. . .... . . . . . . . . .. .... . . . . ... . . . . . . ..... .. . . .. . . . . ... . .... . . ...... . .. . . .. . ........... . .......... . ... . .. . ..................... . .. . .............................. .. ....... . . ........ . ........ . . .... .. . ... . . . . .. ... . ........... . . . ............... .................. . . . . . . . . . ...... . . . .. . .. .
lowQualScore : 33 4 99 11111111 0 0 99 0 9999 5 0 0 6 77 99 1 0 8 1 0 0 444 4 4 4 11 11 9 2222 4 4 0 0 0 0 5 0 99 1111 0 0 0 2 000 2 0 5 2 0 0 11111 44 3 7 99 7 7 7 7 777 3 2222 0 0 222222 7 22 7 7 99 7 99999999999 7 0000000000 7 777 7 22 5 777777777777777777777 6 77 3 999999999999999999999999999999 99 3333333 0 6 22222222 0 44444444 0 0 6666 99 0 111 0 0 1 0 99 444 9 00000000000 0 4 7 666666666666666 666666666666666666 0 0 0 0 6 0 7 6 7 666666 3 7 7 99 0 99 4
consensus : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTGAAA-TACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAG-AC--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
Reference ( family-1504 ) : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTNCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCANTGNAA-TACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAG-AC--GAACGATCG--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAATCTCGAGAGACANACATGAAAA-AGCGTGT-GGCACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
gi|1 : GGTGGATCATTTAATATGTAT--AAAACA--------AA-TGCGCG--TCCGTGGT--GGTCA-CTCGTG-AAATTTCAAACTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCAT-ACATTATGGAC-AA-A-TGACACCCAAC--GTATATTAATCTACGG-AATGTGAC-T-AATATTCTCTTGTT-ACGCACTGTAATTACG-TCAGTTTGTC-ATGTAAATCC-AGAGG-ATGGGG-AA-GTCGAAA-ACTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TC-AAAGTGGAA-T---AAGCAGTC-TGATATC-CCAGGAGTTTGGG--GACTAAATA-GGTTGTATCA-GTCTGGCGCGTCTGATCTCGATAAACGCTGGTGTATTTGGTAGGAGACAGGGTTCAGCGTGGAA-AGT-CAGCCTGACAGGACGGAACGGAAGGTATTGGACGTAAAGAATCTTTCACTTGACCGCCACGTGTCGAG-ACAGGAGCG-TCA--GTCTTTCAGGCAACTTGTGTTAGTAAAAACCCATCGTGTAGGCAGCCCTTGAAT-----------------GTATCTGTAGTGAATTAT--CG--C---AAAGA-CTTCATCATGTTC-----AATG-A-AAA----AC--ACTGTTTCAAGA----AG--TTAC--GTA--AAAGGA-TGTTTTGTTCTCGTTTAA-T-AAA-A---------TACACCAGACGTT-GTTGT------TAG---AAAACATTCCGAATCTCGAGAGACACACATGAAAT-AGCGTGT-GGCATGGGCTAG-AGGAAA-AAG-C-A-T------GGAAA-GTTG-AT--AATGACTGG-ACCGTGTTGATATT
gi|10 : gcTTTTAATCC--TCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGT-AA-AATGACACC--TT--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACACAATAAAA-TA-G-TCAGTTTGT--ATGTAAA--C-AGAAA-ATGAGG-AA-GTCCAAAGATTTATTACCAAG---AA----------TTGTAGGTAGCTT-TC-AAAGTGGAAAT---AAGCAATC-CGATATTGCTAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGTttctgatgaattgtaaagtggtaattgacaaaataaccgcgctcatcaatgtggcggaagcgccttgagacagagtggtttgccccatttgcattagtcccggtacggtgcggctaagt
gi|11 : TTTA-TCCATTCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGTAAA-A-TGACA-C--ACTTGTA-TATAAT-TA----GATGTGACGT-AATAT----TTGTG-ACACAAT-AAA-TA-G-TCAGTTTGT--ATGTAAA--CAAGAAA-ATGAGG-AAGGTCCAAAGATTTAT-ACCAAG---AA----------TTGTAGGTAGCTTGTC--AAGTGGATAT---AAGCAATC-CGATATTG-TAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGT
gi|12 : TATAT------GGAAAGA-GGTTC--CGTGGAG-AAC-AAGCCG--C-GAACGGGAAGGAAG-----------AAAAAG-GTT----------AGCATG---CGAG-AC--AAACGATCA--GT-TTTGAG---------GTTAATAAAAACCCATCGTGTAG--AGCC-TTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTT-----G--G-AGAA--------------------A----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAGT
gi|13 : GACACC--AC--ATATTATAAT-TA----GATGTGAAGT-AATACTC-CTTGTG-ACACATTGAAA-TACG-TCAGTTTGT--ATGCGAA-----GAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AAAGAGTTGTAAATAGCTT-TC-AAAGGGGAATT---AAGCAGTC---------CCAGGAGTTT-GG--GACTAAAGA-GG-TGTA-CA-GT---GTGg
gi|14 : GGTGGATGAT--AAAAT-TAT--AAATAA--------AAACG-GCA--TTCAAA-T--G-TTGGCAAGTG-ATATTCCAA-CATTTAGA--TTTCCCTTTTAATCC--TCCTGACAC-ACGTGTGTACGTAAATA-GATCAC-GCA-AATTGGT-AAGA-TGACACC--AT--GTATTACACT-TA----GATGTGACGT-TATATTT-CT
gi|15 : agtAC-AT-A-TGACACC--AC--ATCTTATAAT-TA----GACATAACGT-AATATTC-CTTCTG-ACGCATTGTAA-TACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ACGGGG-AA-GTCGAAAGATTTATTGCCGAGCTTAAAAC-AAAGAGTTGTAAATAGCCT-TG-AACGTG
gi|17 : cagaaatatgccatcatGGTGGATCAT--AATAT-TAT--AATCAA--------AA-TT-GCG--TCCGAG-T--G-TCGGCTCGTG-GAATTTCAA-C-ATTTTA--TTTACATTTTAATCC--TCTTTA----------------AAATA-GATTAC-ACT-TATGAAC-AT-A-TG
gi|19 : cGATCATG-AATAC-TGTCGAGACAATTGGCAAAAA-TG-GCG--TCCGTG-TTGA-TCGGCTCGTGAAAATTTCAA-CTTTTTtatgatggcatatttctgccaccac
gi|2 : AAAA-TTTAATCCAGTTCTTTGGA--G-AGAAATAAAAT--ACTGATTCTAGACTAGAGATTTACCAGCTTAAAAAGACTG-T--GTCC-CG--TAACT-AAATGATTTCGTGCT-CAAGA-ACG-T-GTTGTATAAGATAGAAAAACACA-
gi|2 : gAA-AAGACGATT------GGAAAAGTTGTATGAAATGGCTGGAACCG-TGTGATATTgaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataacaaaagacgattggaaaagttgtatgaaatggctggaaccgtgtgatattttctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|20 : gaaaatttaatccagttctttggagagaaataaaatactgattctagactagagatttaccagcttaaaaagactgtgtcccgtaactaaatgatttcgtgctcaagaacgtgttgtataagatagaaaaacacagaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataac----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGT-------C-TCGCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------Attctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|21 : T--AAACAA--------AA-TG-GCA--TCTATA-T--A-TCGGCTCATG-AAATTTCAA-CATTTTTA--T
gi|3 : gAGCCT--T-GAACGTGAAGGAA------------AAAAAA-CTT----------ACCATG---CAAT-AC--GAACGTTTGAGGT-TTTGAG---------GTTAGTAAAAACCCACCTTGTAG--AGCATT-GAAA-----------------T-AT---------ATTAC--C---G---AAATA-TTTAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTTC-AGTT--A---GA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACAA-ATG-A-GTTGT------TAG-AAAAAATA-TCCGAAT-TCGAGAGACAAACATG
gi|3 : AA-AACCC-ATT------TGAAA-GTTG-AT--AATGACTGGAGCCG-TGTGATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccatttgaaagttgataatgactggagccgtgtgatattttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|4 : agccttgaacgtgaaggaaaaaaaacttaccatgcaatacgaacgtttgaggttttgaggttagtaaaaacccaccttgtagagcattgaaatatattaccgaaatatttaatcagttcagagaaaatactgtttcagaagtttcagttagatgtttgttccgtaataaatatcacaaatgagttgttagaaaaaatatccgaattcgagagacaaacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--CTCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCTATAAATA-GATCAT-AGA-TATGGAC-AA-A-TGGCACT--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTGAAA-TATG-TCAGTTTGT--ACGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AATGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGAAGTTT-GG--GACTAAATA-GG-TGTA-CA-GT---GTGTA-CTG----TAATAAA-GC-GATATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAGAA-CTT----------AGCATA---CGAG-AC--GAGCGATCA--GT-TTTGAG---------GTAAGTAAAAACCCACCGTGTAG--AGCCTGTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTCGTTC-CG--TAA-T-AAATA---------T-CACAG-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAAACGAACATTAAAA-AGCGCGA-GACATGGGCTAG-AGGAAA-AAGAC-ATT------GGAAA-GTTG-AT--AATGATTGGAACCGTTGTGATATTttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|5 : TTAGTAAAAACGCATCGTGTAGGCAGCCCTTAGAATGTACTGCTGTGACGTTG-AA---------ATTATGTCGGGC---AAAGACTTCAATCATGTTC-----AT-G-AGAAA----ATC-ACTGTTTC-AGA----AG--TTAC-G--T--AAAAGA-TG-TTTGTTC-CG--TAA-TTAAATA---------G-CACAG-ACG-TTGTTGT------TAGAAAAAA-CA-TCCGAATCTCGAGAGACGCACATGAAAATAGCGTGTCGGC-TGGGCTAGAAGGAAACAAGCA-ATT------GG-AA-GTTG-AT--AATGA-TGG-ACCGTGTTGATATT
gi|6 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--C-TGGAGAAACAAAGCCT--C-GAACGGGAAGGAAGA----------AAAAAA-CTT----------ACCA-G---TGAGAAT--GAACAATCA--G---------------------ATAAAAACCTCCTATGTAG--AGCCTTTGAAA-----------------G-AT---------A-TAC--C---CACAAAGGA-TACAATAATTTTC-----A--GAAGAAA----ATTGACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA---AAACA---------T-T-CGA-AC---------------TAGA-------------------GAGA---AAGCATAAAAA-AGCGTGT-GAC-CGGGCTAG-AGGAAA-GAGGC-ATTCGCGAGGGGAA-GTTG-AT--GGTGACAGGAACC--CG-GATATTcttctgatgaaatgtaatagtggtacttggacgaaaataaccgcgtcacaatggtgtgcggaagcgcctctggagcagagtgggtttgccccaattttttttgcattagccggctctgcgggctcacggtccatgagcatgatgctttgggggtgtatctgcttgaatggaccaggtatctctttgcacagttgctgtaatggctaactataaacgcccagagataaacatagaaaatcatagacaatgaattgtggccagttgtctgcaaggcattcagttcctagaacga
gi|7 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAG-AAC-AAGCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---TGAG-AT--GAACAATC------------------------AGTAAAAACCCTCCATGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TACAATAAT-TTC-----A--G-AGAAA----AT--ACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA-A-AAACA---------T-T-CGA-AC---------------TAGA---------------------GAGACAAGCATAAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-GAGGC-ATTCGCG--GGGAA-GTTG-AT--GGTGACAGGAACC-CTGGGATATTttctgatgtaatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaaagtagtgtgttgccccaatgcattagtcccgggtgtgatgggccaggt
gi|8 : GGTGGATCATT-AATATGTAT--AAACAA--------A--TG-GCGCCTCCGTG-T--GGTCA-CTCGTG-AA-TTTCAA-CTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCATTACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAATCTACGGGAATGTGACGTCAATATTT-CTCTTGTACGCACTGTAA-TACGTTCAGTTTGTTCATGTAAAT-C-AGAGGTATGGGGAAA-GTCGAAAGATTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TCAAAAGTGGAATA---TAGCAGTCTTGATATCGCCAGGAGTTT-GGGTGACTAAATA-GG-Tttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|9 : agcGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAAGTTCAA-CTTTTTTA--TTTACTTTTTAATCC--TCTTTAAAT-GCATGTGTCCATAAATA-GATCAT-ACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTGAAA-TACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAACGATTTATCACCGAGCTTAAAAC-AAAGGGTTGTAAATAGCTT-TC-AAAGTGGAATTTTAAAGCAGTC-CGATATCTCCAGGAGTTT-GG--GACTGAATAGGG-TGT--CACGT---GTGTG-CTG----tgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCAGAGCATGATGCTTTGGGGGTGTATCTGCTGTGAATGGACCAGGTTATCTGTTTGACAGTGCTGTAATGGTAACTATAAACGCCCAGAATACATAGAAATCATAGACACATGAATTGTGGCCAGTGTTGCCAGGCATTCGTTCC
Unaligned ( gi|18 ): TAATATTCCTAAAACTTGAAAGACAACACTTGTGACGGGAAGTTTGCATATGTATGGTGGCATATTTCTGCCACCA
Alignments
lowQualScore : 11 1 11111111 1111 11 1 1 1111 11 1111 111 1 11111 111 1 1111 111111 22222222222 1 2222222222 111 1111 333333333333333333333 11 444444444444444444444444444444 1111111 1 11111111 11111111 1 1111 111 22222222222 222222222222222 1 1 1 222222 11
lowQualScore : 99 1 66 88888888 5 5 66 5 0000 2 5 5 3 55 66 0 0 2 1 0 5 888 4 4 4 66 66 8 7777 4 4 5 1 5 4 5 11 3333 5 5 5 0 222 0 0 7 0 5 5 00000 77 4 5 77 5 5 6 6 111 3 4444 8 8 999999 6 99 6 5 77 5 77777777777 1 5555555555 1 111 1111 3 888888888888888888888 1 55 2 777777777777777777777777777777 77 9999999 5 2 77777777 5 22222222 1 0 0000 66 5 777 5 5 8 5 66 000 0 33333333333 5 0 5 111111111111111 9 1 5 3 2 8 8 0 8 5 6 5 888888 2 5 5 77 5 44 1
lowQualScore : .. . .. ........ . . .. . .... . . . . .. .. . . . . . . ... . . . .. .. . .... . . . . . . . .. .... . . . . ... . . . . . . ..... .. . . .. . . . . ... . .... . . ...... . .. . . .. . ........... . .......... . ... .... . ..................... . .. . .............................. .. ....... . . ........ . ........ . . .... .. . ... . . . . .. ... . ........... . . . ............... . . . . . . . . . . . . ...... . . . .. . .. .
lowQualScore : 33 4 99 11111111 0 0 99 0 9999 5 0 0 6 77 99 1 0 5 1 0 0 444 4 4 4 11 11 9 2222 4 4 0 2 0 5 0 99 1111 0 0 0 2 000 1 0 6 2 0 0 11111 44 3 7 99 7 7 7 7 777 3 2222 0 0 222222 7 22 7 7 99 7 11111111111 4 0000000000 7 777 2222 5 333333333333333333333 6 77 3 999999999999999999999999999999 99 3333333 0 6 22222222 0 44444444 0 0 6666 99 0 111 0 0 1 0 99 444 9 00000000000 0 4 7 666666666666666 0 4 7 3 2 0 0 6 0 7 6 7 666666 3 7 7 99 0 99 4
consensus : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
Reference ( family-1504 ) : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
gi|1 : GGTGGATCATTTAATATGTAT--AAAACA--------AA-TGCGCG--TCCGTGGT--GGTCA-CTCGTG-AAATTTCAAACTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCAT-ACATTATGGAC-AA-A-TGACACCCAAC--GTATATTAATCTACGG-AATGTGAC-T-AATATTCTCTTGTT-ACGCACTGTAATTACG-TCAGTTTGTC-ATGTAAATCC-AGAGG-ATGGGG-AA-GTCGAAA-ACTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TC-AAAGTGGAA-T---AAGCAGTC-TGATATC-CCAGGAGTTTGGG--GACTAAATA-GGTTGTATCA-GTCTGGCGCGTCTGATCTCGATAAACGCTGGTGTATTTGGTAGGAGACAGGGTTCAGCGTGGAAAG-TCA-GCCTGACAGGACGGAACGGAAGGTATTGGACGTAAAGAATCTTTCACTTGACCGCCACGTGTCGAGA-CAGGAGCG-TCA--GTCTTTCAGGCAACTTGTGTTAGTAAAAACCCATCGTGTAGGCAGCCCTTGAAT-----------------GTATCTGTAGTGAATTAT--CG--C---AAAGA-CTTCATCATGTTC-----AATG-A-AAA----AC--ACTGTTTCAAGA----AG--TTAC--GTA--AAAGGA-TGTTTTGTTCTCGTTTAA-T-AAA-A---------TACACCAGACGTT-GTTGT------TAG---AAAACATTCCGAATCTCGAGAGACACACATGAAAT-AGCGTGT-GGCATGGGCTAG-AGGAAA-AAG-C-A-T------GGAAA-GTTG-AT--AATGACTGG-ACCGTGTTGATATT
gi|10 : gcTTTTAATCC--TCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGT-AA-AATGACACC--TT--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACACAATA-AAATA-G-TCAGTTTGT--ATGTAAA--C-AGAAA-ATGAGG-AA-GTCCAAAGATTTATTACCAAG---------AA----TTGTAGGTAGCTT-TC-AAAGTGGAAAT---AAGCAATC-CGATATTGCTAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGTttctgatgaattgtaaagtggtaattgacaaaataaccgcgctcatcaatgtggcggaagcgccttgagacagagtggtttgccccatttgcattagtcccggtacggtgcggctaagt
gi|11 : TTTA-TCCATTCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGTAAA-A-TGACA-C--ACTTGTA-TATAAT-TA----GATGTGACGT-AATAT----TTGTG-ACACAAT--AAATA-G-TCAGTTTGT--ATGTAAA--CAAGAAA-ATGAGG-AAGGTCCAAAGATTTAT-ACCAAG---AA----------TTGTAGGTAGCTTGTC--AAGTGGATAT---AAGCAATC-CGATATTG-TAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGT
gi|12 : TATAT------GGAAAGA-GGTTC--CGTGGAGAA-CAA-GCCG--C-GAACGGGAAGGAAG-----------AAAAAG-GTT----------AGCATG---CGAGA-C--AAACGATCA--GT-TTTGAG---------GTTAATAAAAACCCATCGTGTAG--AGCC-TTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTT-----G--G-AGAA--------------------A----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAGT
gi|13 : GACACC--AC--ATATTATAAT-TA----GATGTGAAGT-AATACTC-CTTGTG-ACACATTG-AAATACG-TCAGTTTGT--ATGCGAA-----GAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AAAGAGTTGTAAATAGCTT-TC-AAAGGGGAATT---AAGCAGTC---------CCAGGAGTTT-GG--GACTAAAGA-GG-TGTA-CA-GT---GTGg
gi|14 : GGTGGATGAT--AAAAT-TAT--AAATAA--------AAACG-GCA--TTCAAA-T--G-TTGGCAAGTG-ATATTCCAA-CATTTAGA--TTTCCCTTTTAATCC--TCCTGACAC-ACGTGTGTACGTAAATA-GATCAC-GCA-AATTGGT-AAGA-TGACACC--AT--GTATTACACT-TA----GATGTGACGT-TATATTT-CT
gi|15 : agtAC-AT-A-TGACACC--AC--ATCTTATAAT-TA----GACATAACGT-AATATTC-CTTCTG-ACGCATTG-TAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ACGGGG-AA-GTCGAAAGATTTATTGCCGAGCTTAAAAC-AAAGAGTTGTAAATAGCCT-TG-AACGTG
gi|17 : cagaaatatgccatcatGGTGGATCAT--AATAT-TAT--AATCAA--------AA-TT-GCG--TCCGAG-T--G-TCGGCTCGTG-GAATTTCAA-C-ATTTTA--TTTACATTTTAATCC--TCTTTA----------------AAATA-GATTAC-ACT-TATGAAC-AT-A-TG
gi|19 : cGATCATG-AATAC-TGTCGAGACAATTGGCAAAAA-TG-GCG--TCCGTG-TTGA-TCGGCTCGTGAAAATTTCAA-CTTTTTtatgatggcatatttctgccaccac
gi|2 : AAAA-TTTAATCCAGTTCTTTGGA--G-AGAAATAAAAT--ACTGATTCTAGACTAGAGATTTACCAGCTTAAAAAGACTG-T--GTCC-CG--TAACT-AAATGATTTCGTGCT-CAAGA-ACG-T-GTTGTATAAGATAGAAAAACACA-
gi|2 : gAA-AAGACGATT------GGAAAAGTTGTATGAAATGGCTGGAACCG-TGTGATATTgaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataacaaaagacgattggaaaagttgtatgaaatggctggaaccgtgtgatattttctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|20 : gaaaatttaatccagttctttggagagaaataaaatactgattctagactagagatttaccagcttaaaaagactgtgtcccgtaactaaatgatttcgtgctcaagaacgtgttgtataagatagaaaaacacagaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataac----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGT-------CTC-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------Attctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|21 : T--AAACAA--------AA-TG-GCA--TCTATA-T--A-TCGGCTCATG-AAATTTCAA-CATTTTTA--T
gi|3 : gA-GCCT--T-GAACGTGAAGGAA------------AAAAAA-CTT----------ACCATG---CAATA-C--GAACGTTTGAGGT-TTTGAG---------GTTAGTAAAAACCCACCTTGTAG--AGCATT-GAAA-----------------T-AT---------ATTAC--C---G---AAATA-TTTAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTTC-AGTT--A---GA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACAA-ATG-A-GTTGT------TAG-AAAAAATA-TCCGAAT-TCGAGAGACAAACATG
gi|3 : AA-AACCC-ATT------TGAAA-GTTG-AT--AATGACTGGAGCCG-TGTGATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccatttgaaagttgataatgactggagccgtgtgatattttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|4 : agccttgaacgtgaaggaaaaaaaacttaccatgcaatacgaacgtttgaggttttgaggttagtaaaaacccaccttgtagagcattgaaatatattaccgaaatatttaatcagttcagagaaaatactgtttcagaagtttcagttagatgtttgttccgtaataaatatcacaaatgagttgttagaaaaaatatccgaattcgagagacaaacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--CTCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCTATAAATA-GATCAT-AGA-TATGGAC-AA-A-TGGCACT--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATATG-TCAGTTTGT--ACGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AATGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGAAGTTT-GG--GACTAAATA-GG-TGTA-CA-GT---GTGTA-CTG----TAATAAA-GC-GATATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAGAA-CTT----------AGCATA---CGAGA-C--GAGCGATCA--GT-TTTGAG---------GTAAGTAAAAACCCACCGTGTAG--AGCCTGTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTCGTTC-CG--TAA-T-AAATA---------T-CACAG-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAAACGAACATTAAAA-AGCGCGA-GACATGGGCTAG-AGGAAA-AAGAC-ATT------GGAAA-GTTG-AT--AATGATTGGAACCGTTGTGATATTttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|5 : TTAGTAAAAACGCATCGTGTAGGCAGCCCTTAGAATGTACTGCTGTGACGTTG-AA---------ATTATGTCGGGC---AAAGACTTCAATCATGTTC-----AT-G-AGAAA----ATC-ACTGTTTC-AGA----AG--TTAC-G--T--AAAAGA-TG-TTTGTTC-CG--TAA-TTAAATA---------G-CACAG-ACG-TTGTTGT------TAG-AAAAAACA-TCCGAATCTCGAGAGACGCACATGAAAATAGCGTGTCGGC-TGGGCTAGAAGGAAACAAGCA-ATT------GG-AA-GTTG-AT--AATGA-TGG-ACCGTGTTGATATT
gi|6 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--C-TGGAGAAACAAAGCCT--C-GAACGGGAAGGAAG-----------AAAAAAACTT----------ACCA-G---TGAGAAT--GAACAATCA--G---------------------ATAAAAACCTCCTATGTAG--AGCCTTTGAAA-----------------G-AT---------A-TAC--C---CACAAAGGA-TACAATAATTTTC-----A--GAAGAAA----ATTGACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA---AAACA---------T-T-CGA-AC---------------TAGAGAGAA----------------------AGCATAAAAA-AGCGTGT-GAC-CGGGCTAG-AGGAAA-GAGGC-ATTCGCGAGGGGAA-GTTG-AT--GGTGACAGGAACC--CG-GATATTcttctgatgaaatgtaatagtggtacttggacgaaaataaccgcgtcacaatggtgtgcggaagcgcctctggagcagagtgggtttgccccaattttttttgcattagccggctctgcgggctcacggtccatgagcatgatgctttgggggtgtatctgcttgaatggaccaggtatctctttgcacagttgctgtaatggctaactataaacgcccagagataaacatagaaaatcatagacaatgaattgtggccagttgtctgcaaggcattcagttcctagaacga
gi|7 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---TGAGA-T--GAACAATC------------------------AGTAAAAACCCTCCATGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TACAATAAT-TTC-----A--G-AGAAA----AT--ACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA-A-AAACA---------T-T-CGA-AC---------------TAG---------------------AGAGACAAGCATAAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-GAGGC-ATTCGCG--GGGAA-GTTG-AT--GGTGACAGGAACC-CTGGGATATTttctgatgtaatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaaagtagtgtgttgccccaatgcattagtcccgggtgtgatgggccaggt
gi|8 : GGTGGATCATT-AATATGTAT--AAACAA--------A--TG-GCGCCTCCGTG-T--GGTCA-CTCGTG-AA-TTTCAA-CTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCATTACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAATCTACGGGAATGTGACGTCAATATTT-CTCTTGTACGCACTG-TAATACGTTCAGTTTGTTCATGTAAAT-C-AGAGGTATGGGGAAA-GTCGAAAGATTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TCAAAAGTGGAATA---TAGCAGTCTTGATATCGCCAGGAGTTT-GGGTGACTAAATA-GG-Tttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|9 : agcGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAAGTTCAA-CTTTTTTA--TTTACTTTTTAATCC--TCTTTAAAT-GCATGTGTCCATAAATA-GATCAT-ACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAACGATTTATCACCGAGCTTAAAAC-AAAGGGTTGTAAATAGCTT-TC-AAAGTGGAATTTTAAAGCAGTC-CGATATCTCCAGGAGTTT-GG--GACTGAATAGGG-TGT--CACGT---GTGTG-CTG----tgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCAGAGCATGATGCTTTGGGGGTGTATCTGCTGTGAATGGACCAGGTTATCTGTTTGACAGTGCTGTAATGGTAACTATAAACGCCCAGAATACATAGAAATCATAGACACATGAATTGTGGCCAGTGTTGCCAGGCATTCGTTCC
Unaligned ( gi|18 ): TAATATTCCTAAAACTTGAAAGACAACACTTGTGACGGGAAGTTTGCATATGTATGGTGGCATATTTCTGCCACCA
Alignments
lowQualScore : 11 1 11111111 1111 11 1 1 1111 11 1111 111 1 11111 111 1 1111 111111 22222222222 1 2222222222 111 1111 333333333333333333333 11 444444444444444444444444444444 1111111 1 11111111 11111111 1 1111 111 22222222222 222222222222222 1 1 1 222222 11
lowQualScore : 99 1 66 88888888 5 5 66 5 0000 2 5 5 3 55 66 0 0 2 1 0 5 888 4 4 4 66 66 8 7777 4 4 5 1 5 4 5 11 3333 5 5 5 0 222 0 0 7 0 5 5 00000 77 4 5 77 5 5 6 6 111 3 4444 8 8 999999 6 99 6 5 77 5 77777777777 1 5555555555 1 111 1111 3 888888888888888888888 1 55 2 777777777777777777777777777777 77 9999999 5 2 77777777 5 22222222 1 0 0000 66 5 777 5 5 8 5 66 000 0 33333333333 5 0 5 111111111111111 9 1 5 3 2 8 8 0 8 5 6 5 888888 2 5 5 77 5 44 1
lowQualScore : .. . .. ........ . . .. . .... . . . . .. .. . . . . . . ... . . . .. .. . .... . . . . . . . .. .... . . . . ... . . . . . . ..... .. . . .. . . . . ... . .... . . ...... . .. . . .. . ........... . .......... . ... .... . ..................... . .. . .............................. .. ....... . . ........ . ........ . . .... .. . ... . . . . .. ... . ........... . . . ............... . . . . . . . . . . . . ...... . . . .. . .. .
lowQualScore : 33 4 99 11111111 0 0 99 0 9999 5 0 0 6 77 99 1 0 5 1 0 0 444 4 4 4 11 11 9 2222 4 4 0 2 0 5 0 99 1111 0 0 0 2 000 1 0 6 2 0 0 11111 44 3 7 99 7 7 7 7 777 3 2222 0 0 222222 7 22 7 7 99 7 11111111111 4 0000000000 7 777 2222 5 333333333333333333333 6 77 3 999999999999999999999999999999 99 3333333 0 6 22222222 0 44444444 0 0 6666 99 0 111 0 0 1 0 99 444 9 00000000000 0 4 7 666666666666666 0 4 7 3 2 0 0 6 0 7 6 7 666666 3 7 7 99 0 99 4
consensus : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
Reference ( family-1504 ) : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
gi|1 : GGTGGATCATTTAATATGTAT--AAAACA--------AA-TGCGCG--TCCGTGGT--GGTCA-CTCGTG-AAATTTCAAACTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCAT-ACATTATGGAC-AA-A-TGACACCCAAC--GTATATTAATCTACGG-AATGTGAC-T-AATATTCTCTTGTT-ACGCACTGTAATTACG-TCAGTTTGTC-ATGTAAATCC-AGAGG-ATGGGG-AA-GTCGAAA-ACTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TC-AAAGTGGAA-T---AAGCAGTC-TGATATC-CCAGGAGTTTGGG--GACTAAATA-GGTTGTATCA-GTCTGGCGCGTCTGATCTCGATAAACGCTGGTGTATTTGGTAGGAGACAGGGTTCAGCGTGGAAAG-TCA-GCCTGACAGGACGGAACGGAAGGTATTGGACGTAAAGAATCTTTCACTTGACCGCCACGTGTCGAGA-CAGGAGCG-TCA--GTCTTTCAGGCAACTTGTGTTAGTAAAAACCCATCGTGTAGGCAGCCCTTGAAT-----------------GTATCTGTAGTGAATTAT--CG--C---AAAGA-CTTCATCATGTTC-----AATG-A-AAA----AC--ACTGTTTCAAGA----AG--TTAC--GTA--AAAGGA-TGTTTTGTTCTCGTTTAA-T-AAA-A---------TACACCAGACGTT-GTTGT------TAG---AAAACATTCCGAATCTCGAGAGACACACATGAAAT-AGCGTGT-GGCATGGGCTAG-AGGAAA-AAG-C-A-T------GGAAA-GTTG-AT--AATGACTGG-ACCGTGTTGATATT
gi|10 : gcTTTTAATCC--TCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGT-AA-AATGACACC--TT--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACACAATA-AAATA-G-TCAGTTTGT--ATGTAAA--C-AGAAA-ATGAGG-AA-GTCCAAAGATTTATTACCAAG---------AA----TTGTAGGTAGCTT-TC-AAAGTGGAAAT---AAGCAATC-CGATATTGCTAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGTttctgatgaattgtaaagtggtaattgacaaaataaccgcgctcatcaatgtggcggaagcgccttgagacagagtggtttgccccatttgcattagtcccggtacggtgcggctaagt
gi|11 : TTTA-TCCATTCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGTAAA-A-TGACA-C--ACTTGTA-TATAAT-TA----GATGTGACGT-AATAT----TTGTG-ACACAAT--AAATA-G-TCAGTTTGT--ATGTAAA--CAAGAAA-ATGAGG-AAGGTCCAAAGATTTAT-ACCAAG---AA----------TTGTAGGTAGCTTGTC--AAGTGGATAT---AAGCAATC-CGATATTG-TAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGT
gi|12 : TATAT------GGAAAGA-GGTTC--CGTGGAGAA-CAA-GCCG--C-GAACGGGAAGGAAG-----------AAAAAG-GTT----------AGCATG---CGAGA-C--AAACGATCA--GT-TTTGAG---------GTTAATAAAAACCCATCGTGTAG--AGCC-TTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTT-----G--G-AGAA--------------------A----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAGT
gi|13 : GACACC--AC--ATATTATAAT-TA----GATGTGAAGT-AATACTC-CTTGTG-ACACATTG-AAATACG-TCAGTTTGT--ATGCGAA-----GAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AAAGAGTTGTAAATAGCTT-TC-AAAGGGGAATT---AAGCAGTC---------CCAGGAGTTT-GG--GACTAAAGA-GG-TGTA-CA-GT---GTGg
gi|14 : GGTGGATGAT--AAAAT-TAT--AAATAA--------AAACG-GCA--TTCAAA-T--G-TTGGCAAGTG-ATATTCCAA-CATTTAGA--TTTCCCTTTTAATCC--TCCTGACAC-ACGTGTGTACGTAAATA-GATCAC-GCA-AATTGGT-AAGA-TGACACC--AT--GTATTACACT-TA----GATGTGACGT-TATATTT-CT
gi|15 : agtAC-AT-A-TGACACC--AC--ATCTTATAAT-TA----GACATAACGT-AATATTC-CTTCTG-ACGCATTG-TAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ACGGGG-AA-GTCGAAAGATTTATTGCCGAGCTTAAAAC-AAAGAGTTGTAAATAGCCT-TG-AACGTG
gi|17 : cagaaatatgccatcatGGTGGATCAT--AATAT-TAT--AATCAA--------AA-TT-GCG--TCCGAG-T--G-TCGGCTCGTG-GAATTTCAA-C-ATTTTA--TTTACATTTTAATCC--TCTTTA----------------AAATA-GATTAC-ACT-TATGAAC-AT-A-TG
gi|19 : cGATCATG-AATAC-TGTCGAGACAATTGGCAAAAA-TG-GCG--TCCGTG-TTGA-TCGGCTCGTGAAAATTTCAA-CTTTTTtatgatggcatatttctgccaccac
gi|2 : AAAA-TTTAATCCAGTTCTTTGGA--G-AGAAATAAAAT--ACTGATTCTAGACTAGAGATTTACCAGCTTAAAAAGACTG-T--GTCC-CG--TAACT-AAATGATTTCGTGCT-CAAGA-ACG-T-GTTGTATAAGATAGAAAAACACA-
gi|2 : gAA-AAGACGATT------GGAAAAGTTGTATGAAATGGCTGGAACCG-TGTGATATTgaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataacaaaagacgattggaaaagttgtatgaaatggctggaaccgtgtgatattttctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|20 : gaaaatttaatccagttctttggagagaaataaaatactgattctagactagagatttaccagcttaaaaagactgtgtcccgtaactaaatgatttcgtgctcaagaacgtgttgtataagatagaaaaacacagaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataac----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGT-------CTC-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------Attctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|21 : T--AAACAA--------AA-TG-GCA--TCTATA-T--A-TCGGCTCATG-AAATTTCAA-CATTTTTA--T
gi|3 : gA-GCCT--T-GAACGTGAAGGAA------------AAAAAA-CTT----------ACCATG---CAATA-C--GAACGTTTGAGGT-TTTGAG---------GTTAGTAAAAACCCACCTTGTAG--AGCATT-GAAA-----------------T-AT---------ATTAC--C---G---AAATA-TTTAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTTC-AGTT--A---GA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACAA-ATG-A-GTTGT------TAG-AAAAAATA-TCCGAAT-TCGAGAGACAAACATG
gi|3 : AA-AACCC-ATT------TGAAA-GTTG-AT--AATGACTGGAGCCG-TGTGATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccatttgaaagttgataatgactggagccgtgtgatattttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|4 : agccttgaacgtgaaggaaaaaaaacttaccatgcaatacgaacgtttgaggttttgaggttagtaaaaacccaccttgtagagcattgaaatatattaccgaaatatttaatcagttcagagaaaatactgtttcagaagtttcagttagatgtttgttccgtaataaatatcacaaatgagttgttagaaaaaatatccgaattcgagagacaaacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--CTCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCTATAAATA-GATCAT-AGA-TATGGAC-AA-A-TGGCACT--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATATG-TCAGTTTGT--ACGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AATGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGAAGTTT-GG--GACTAAATA-GG-TGTA-CA-GT---GTGTA-CTG----TAATAAA-GC-GATATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAGAA-CTT----------AGCATA---CGAGA-C--GAGCGATCA--GT-TTTGAG---------GTAAGTAAAAACCCACCGTGTAG--AGCCTGTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTCGTTC-CG--TAA-T-AAATA---------T-CACAG-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAAACGAACATTAAAA-AGCGCGA-GACATGGGCTAG-AGGAAA-AAGAC-ATT------GGAAA-GTTG-AT--AATGATTGGAACCGTTGTGATATTttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|5 : TTAGTAAAAACGCATCGTGTAGGCAGCCCTTAGAATGTACTGCTGTGACGTTG-AA---------ATTATGTCGGGC---AAAGACTTCAATCATGTTC-----AT-G-AGAAA----ATC-ACTGTTTC-AGA----AG--TTAC-G--T--AAAAGA-TG-TTTGTTC-CG--TAA-TTAAATA---------G-CACAG-ACG-TTGTTGT------TAG-AAAAAACA-TCCGAATCTCGAGAGACGCACATGAAAATAGCGTGTCGGC-TGGGCTAGAAGGAAACAAGCA-ATT------GG-AA-GTTG-AT--AATGA-TGG-ACCGTGTTGATATT
gi|6 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--C-TGGAGAAACAAAGCCT--C-GAACGGGAAGGAAG-----------AAAAAAACTT----------ACCA-G---TGAGAAT--GAACAATCA--G---------------------ATAAAAACCTCCTATGTAG--AGCCTTTGAAA-----------------G-AT---------A-TAC--C---CACAAAGGA-TACAATAATTTTC-----A--GAAGAAA----ATTGACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA---AAACA---------T-T-CGA-AC---------------TAGAGAGAA----------------------AGCATAAAAA-AGCGTGT-GAC-CGGGCTAG-AGGAAA-GAGGC-ATTCGCGAGGGGAA-GTTG-AT--GGTGACAGGAACC--CG-GATATTcttctgatgaaatgtaatagtggtacttggacgaaaataaccgcgtcacaatggtgtgcggaagcgcctctggagcagagtgggtttgccccaattttttttgcattagccggctctgcgggctcacggtccatgagcatgatgctttgggggtgtatctgcttgaatggaccaggtatctctttgcacagttgctgtaatggctaactataaacgcccagagataaacatagaaaatcatagacaatgaattgtggccagttgtctgcaaggcattcagttcctagaacga
gi|7 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---TGAGA-T--GAACAATC------------------------AGTAAAAACCCTCCATGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TACAATAAT-TTC-----A--G-AGAAA----AT--ACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA-A-AAACA---------T-T-CGA-AC---------------TAG---------------------AGAGACAAGCATAAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-GAGGC-ATTCGCG--GGGAA-GTTG-AT--GGTGACAGGAACC-CTGGGATATTttctgatgtaatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaaagtagtgtgttgccccaatgcattagtcccgggtgtgatgggccaggt
gi|8 : GGTGGATCATT-AATATGTAT--AAACAA--------A--TG-GCGCCTCCGTG-T--GGTCA-CTCGTG-AA-TTTCAA-CTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCATTACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAATCTACGGGAATGTGACGTCAATATTT-CTCTTGTACGCACTG-TAATACGTTCAGTTTGTTCATGTAAAT-C-AGAGGTATGGGGAAA-GTCGAAAGATTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TCAAAAGTGGAATA---TAGCAGTCTTGATATCGCCAGGAGTTT-GGGTGACTAAATA-GG-Tttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|9 : agcGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAAGTTCAA-CTTTTTTA--TTTACTTTTTAATCC--TCTTTAAAT-GCATGTGTCCATAAATA-GATCAT-ACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAACGATTTATCACCGAGCTTAAAAC-AAAGGGTTGTAAATAGCTT-TC-AAAGTGGAATTTTAAAGCAGTC-CGATATCTCCAGGAGTTT-GG--GACTGAATAGGG-TGT--CACGT---GTGTG-CTG----tgt
blockSeqs : G G CG TTGGCAAA A . CC . TGA G A . A AT AT A A G T T GG A G A . TT C CGGG C . T A . C T TC CA T A G GCT A A G A TTTTA TT G . GT G . . C . . . . . . . . A A . . . A . T . AT A GAGGTTTTGAG T GC T TGTACTGCTGTGACGTTGAA GT GGGC C A TTTGGA A TAAAAT A T CTAG AT C TTA C . T . . CT ATTTCGTGCT A . GTGTTGTATAAGA A A . C A T C A A C A G CGCGAG A A T GA A GT T
blockSeqs : T . . . . . . . GG G . . T . . . A G . . GG . . . . . . . . . . A . C . . TC . . . GCT . A . . AT C G . . . . . . . . . . . . . . . . . . . . . T . C T AGTTTTGAG T . T GAT . CACA . T AT . ATTG T . . . . T . . T . . TT T A . GTTGTTGT A A . . G . . A . . C . CGCG A . . . A GT T
blockSeqs : . . . . . . . . G G . . A . . . A G . . AA . . . . . . . . . . T . T . . C . . . GCT . T . . AT C G . . . . . . . . . . . . . . . . . . . . T . C A AGTTTTGAG A . C TAT . C . T G . ATC T . . . . T . . C . . T T A . GAGTTGT A A . . G . . . . . A . . A . . . A G T
blockSeqs : . . . . . . . . G G . . T . . . C A . . TT . . . . . . . . . . T . C . . C . . . GCT . C . . TT C G . . . . . . . . . . . . . . . . . . . . T . C A AG T . T GAT . G . T A . AT T . . . . T . . T . . T G A . GTGTTGT . A . . A . . . . . C . . G . . . A G T
blockSeqs : . . . . . . . . A G . . T . . . C A . . AT . . . . . . . . . . T . C . . C . . . G . A . . TT C T . . . . . . . . . . . . . . . . . . . . T A . . . T GAT . C . . A . AT C . . . . T . . . . . T T . . . . . . . . . G . . G . . . A C G
blockSeqs : . . . . . . . . G G . . T . . . C A . . AT . . . . . . . . . . C . . . . C . . . G . . . . TA . . . . . . . . . . . . . . . GAT . C . . A . AT C . . . . G . . . . . A T . . . . . . . G . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . AT . . . . . . . . . . T . . . . . . . . C . . . . . . A . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** G*** ** AT* ** **** ** C*** GCT TT*** *** **** ****** ** ** *********** ********** *** C*** AGTTTTGAG************ ** GAT*************************** C****** A******* ** T********** GTGTTGT******** GT
originalCons : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
finalCons : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-TG---TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACAT-ATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAAC---AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGAC---GAACGATCAGTTTTGAG------------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAAGAT---------------------------ATTAC--CC------AAAGA-TTCAATCATGTTCA-------G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATAT----------CACGA-ACGTGTTGT--------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCAGAGCATGATGCTTTGGGGGTGTATCTGCTGTGAATGGACCAGGTTATCTGTTTGACAGTGCTGTAATGGTAACTATAAACGCCCAGAATACATAGAAATCATAGACACATGAATTGTGGCCAGTGTTGCCAGGCATTCGTTCC
Unaligned ( gi|18 ): TAATATTCCTAAAACTTGAAAGACAACACTTGTGACGGGAAGTTTGCATATGTATGGTGGCATATTTCTGCCACCA
Alignments
lowQualScore : 11 1 11111111 1111 11 1 1 1111 11 1111 111 1 11111 111 1 1111 111111 22222222222 1 2222222222 111 1111 333333333333333333333 11 444444444444444444444444444444 1111111 1 11111111 11111111 1 1111 111 22222222222 222222222222222 1 1 1 222222 11
lowQualScore : 99 1 66 88888888 5 5 66 5 0000 2 5 5 3 55 66 0 0 2 1 0 5 55 4 4 4 66 66 8 7777 4 4 5 1 5 4 5 11 3333 5 5 5 0 222 0 0 7 0 5 5 00000 77 4 5 77 5 5 6 6 111 3 4444 8 8 999999 6 99 6 5 77 5 77777777777 1 5555555555 1 111 1111 3 888888888888888888888 1 55 2 777777777777777777777777777777 77 9999999 5 2 77777777 5 22222222 1 0 0000 66 5 777 5 5 8 5 66 000 0 33333333333 5 0 5 111111111111111 9 1 5 3 2 8 8 0 8 5 6 5 888888 2 5 5 77 5 44 1
lowQualScore : .. . .. ........ . . .. . .... . . . . .. .. . . . . . . .. . . . .. .. . .... . . . . . . . .. .... . . . . ... . . . . . . ..... .. . . .. . . . . ... . .... . . ...... . .. . . .. . ........... . .......... . ... .... . ..................... . .. . .............................. .. ....... . . ........ . ........ . . .... .. . ... . . . . .. ... . ........... . . . ............... . . . . . . . . . . . . ...... . . . .. . .. .
lowQualScore : 33 4 99 11111111 0 0 99 0 9999 5 0 0 6 77 99 1 0 5 1 0 0 22 4 4 4 11 11 9 2222 4 4 0 2 0 5 0 99 1111 0 0 0 2 000 1 0 6 2 0 0 11111 44 3 7 99 7 7 7 7 777 3 2222 0 0 222222 7 22 7 7 99 7 11111111111 4 0000000000 7 777 2222 5 333333333333333333333 6 77 3 999999999999999999999999999999 99 3333333 0 6 22222222 0 44444444 0 0 6666 99 0 111 0 0 1 0 99 444 9 00000000000 0 4 7 666666666666666 0 4 7 3 2 0 0 6 0 7 6 7 666666 3 7 7 99 0 99 4
consensus : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACG-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
Reference ( family-1504 ) : GGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCCGTAAATA-GATCAC-ACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AANGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGGAGTTT-GG--GACTGAATA-GG-TGTA-CA-GT---GCGTG-CTG----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---CGAGA-C--GAACGATCA--GT-TTTGAG---------GTTAGTAAAAACCCACCGTGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCATGTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACGA-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAGACGAACATGAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-AAGNC-ATT------GGAAA-GTTG-AT--AATGACTGGAACCGTTGTGATATT
gi|1 : GGTGGATCATTTAATATGTAT--AAAACA--------AA-TGCGCG--TCCGTGGT--GGTCA-CTCGTG-AAATTTCAAACTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCAT-ACATTATGGAC-AA-A-TGACACCCAAC--GTATATTAATCTACGG-AATGTGAC-T-AATATTCTCTTGTT-ACGCACTGTAATTACG-TCAGTTTGTC-ATGTAAATCC-AGAGG-ATGGGG-AA-GTCGAAA-ACTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TC-AAAGTGGAA-T---AAGCAGTC-TGATATC-CCAGGAGTTTGGG--GACTAAATA-GGTTGTATCA-GTCTGGCGCGTCTGATCTCGATAAACGCTGGTGTATTTGGTAGGAGACAGGGTTCAGCGTGGAAAG-TCA-GCCTGACAGGACGGAACGGAAGGTATTGGACGTAAAGAATCTTTCACTTGACCGCCACGTGTCGAGA-CAGGAGCG-TCA--GTCTTTCAGGCAACTTGTGTTAGTAAAAACCCATCGTGTAGGCAGCCCTTGAAT-----------------GTATCTGTAGTGAATTAT--CG--C---AAAGA-CTTCATCATGTTC-----AATG-A-AAA----AC--ACTGTTTCAAGA----AG--TTAC--GTA--AAAGGA-TGTTTTGTTCTCGTTTAA-T-AAA-A---------TACACCAGACGTT-GTTGT------TAG---AAAACATTCCGAATCTCGAGAGACACACATGAAAT-AGCGTGT-GGCATGGGCTAG-AGGAAA-AAG-C-A-T------GGAAA-GTTG-AT--AATGACTGG-ACCGTGTTGATATT
gi|10 : gcTTTTAATCC--TCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGT-AA-AATGACACC--TT--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACACAATA-AAATA-G-TCAGTTTGT--ATGTAAA--C-AGAAA-ATGAGG-AA-GTCCAAAGATTTATTACCAAG---------AA----TTGTAGGTAGCTT-TC-AAAGTGGAAAT---AAGCAATC-CGATATTGCTAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGTttctgatgaattgtaaagtggtaattgacaaaataaccgcgctcatcaatgtggcggaagcgccttgagacagagtggtttgccccatttgcattagtcccggtacggtgcggctaagt
gi|11 : TTTA-TCCATTCTTTAAAT-GCATGTGCACGTAAATA-GATCAC-ATG-GATGGGTAAA-A-TGACA-C--ACTTGTA-TATAAT-TA----GATGTGACGT-AATAT----TTGTG-ACACAAT--AAATA-G-TCAGTTTGT--ATGTAAA--CAAGAAA-ATGAGG-AAGGTCCAAAGATTTAT-ACCAAG---AA----------TTGTAGGTAGCTTGTC--AAGTGGATAT---AAGCAATC-CGATATTG-TAGCAGTTT-GG--GACTGAACA-GG-TGTA-CA-GT---TCGT
gi|12 : TATAT------GGAAAGA-GGTTC--CGTGGAGAA-CAA-GCCG--C-GAACGGGAAGGAAG-----------AAAAAG-GTT----------AGCATG---CGAGA-C--AAACGATCA--GT-TTTGAG---------GTTAATAAAAACCCATCGTGTAG--AGCC-TTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTT-----G--G-AGAA--------------------A----AG--TTAC-AGTT--AAAAGA-TG-TTTGTTC-CG--TAA-T-AAGT
gi|13 : GACACC--AC--ATATTATAAT-TA----GATGTGAAGT-AATACTC-CTTGTG-ACACATTG-AAATACG-TCAGTTTGT--ATGCGAA-----GAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AAAGAGTTGTAAATAGCTT-TC-AAAGGGGAATT---AAGCAGTC---------CCAGGAGTTT-GG--GACTAAAGA-GG-TGTA-CA-GT---GTGg
gi|14 : GGTGGATGAT--AAAAT-TAT--AAATAA--------AAACG-GCA--TTCAAA-T--G-TTGGCAAGTG-ATATTCCAA-CATTTAGA--TTTCCCTTTTAATCC--TCCTGACAC-ACGTGTGTACGTAAATA-GATCAC-GCA-AATTGGT-AAGA-TGACACC--AT--GTATTACACT-TA----GATGTGACGT-TATATTT-CT
gi|15 : agtAC-AT-A-TGACACC--AC--ATCTTATAAT-TA----GACATAACGT-AATATTC-CTTCTG-ACGCATTG-TAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ACGGGG-AA-GTCGAAAGATTTATTGCCGAGCTTAAAAC-AAAGAGTTGTAAATAGCCT-TG-AACGTG
gi|17 : cagaaatatgccatcatGGTGGATCAT--AATAT-TAT--AATCAA--------AA-TT-GCG--TCCGAG-T--G-TCGGCTCGTG-GAATTTCAA-C-ATTTTA--TTTACATTTTAATCC--TCTTTA----------------AAATA-GATTAC-ACT-TATGAAC-AT-A-TG
gi|19 : cGATCATG-AATAC-TGTCGAGACAATTGGCAAAAA-TG-GCG--TCCGTG-TTGA-TCGGCTCGTGAAAATTTCAA-CTTTTTtatgatggcatatttctgccaccac
gi|2 : AAAA-TTTAATCCAGTTCTTTGGA--G-AGAAATAAAAT--ACTGATTCTAGACTAGAGATTTACCAGCTTAAAAAGACTG-T--GTCC-CG--TAACT-AAATGATTTCGTGCT-CAAGA-ACG-T-GTTGTATAAGATAGAAAAACACA-
gi|2 : gAA-AAGACGATT------GGAAAAGTTGTATGAAATGGCTGGAACCG-TGTGATATTgaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataacaaaagacgattggaaaagttgtatgaaatggctggaaccgtgtgatattttctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|20 : gaaaatttaatccagttctttggagagaaataaaatactgattctagactagagatttaccagcttaaaaagactgtgtcccgtaactaaatgatttcgtgctcaagaacgtgttgtataagatagaaaaacacagaacataccacccccgataatcggagagagtacgcaaccacatgtgagagaaaaatgcaagggacgttgttccatgtttattcacatgcacatttcttgcgaacattcaaaggagcagtcttcctttttttctctgtacaggttaacaaagaagctacatagaaaatggatgaataac----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGT-------CTC-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------Attctgcaagtggaatgataagtgagtctctttcggtgatagatatgccatttcgacaagaataatatgagattgtggcggagtgtctcctcggagagaaaagaagtgtcgctatgagccccgaagtgctcattagtctaccaggtcgcggacgcataaaatcgtaaggacaatgagatccaattgtgatgagtctggcatggatgattaacctcgtttgtattcttgctaggaaatggatgaccattgtacttcttttcctattttgtttgactgatttaaaggtataatggataaacgcccaggatacatagaaaaaccaatgagaacaaatgaatcttatgcccagttagtatgccacgggcatttcacttctcttgaagtgatctgtatat
gi|21 : T--AAACAA--------AA-TG-GCA--TCTATA-T--A-TCGGCTCATG-AAATTTCAA-CATTTTTA--T
gi|3 : gA-GCCT--T-GAACGTGAAGGAA------------AAAAAA-CTT----------ACCATG---CAATA-C--GAACGTTTGAGGT-TTTGAG---------GTTAGTAAAAACCCACCTTGTAG--AGCATT-GAAA-----------------T-AT---------ATTAC--C---G---AAATA-TTTAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTTC-AGTT--A---GA-TG-TTTGTTC-CG--TAA-T-AAATA---------T-CACAA-ATG-A-GTTGT------TAG-AAAAAATA-TCCGAAT-TCGAGAGACAAACATG
gi|3 : AA-AACCC-ATT------TGAAA-GTTG-AT--AATGACTGGAGCCG-TGTGATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccatttgaaagttgataatgactggagccgtgtgatattttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|4 : agccttgaacgtgaaggaaaaaaaacttaccatgcaatacgaacgtttgaggttttgaggttagtaaaaacccaccttgtagagcattgaaatatattaccgaaatatttaatcagttcagagaaaatactgtttcagaagtttcagttagatgtttgttccgtaataaatatcacaaatgagttgttagaaaaaatatccgaattcgagagacaaacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--CTCGTG-T--G-TCGGCTCGTG-AAATTTCAA-CTTTTTTA--TTTACCTTTTAATCC--TCTTTAAAT-GCATGTGTCTATAAATA-GATCAT-AGA-TATGGAC-AA-A-TGGCACT--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATATG-TCAGTTTGT--ACGTAAA--C-AGAGG-ATGGGG-AA-GTCGAAAGATTTATCACCGAGCTTAAAAC-AATGGGTTGTAAATAGCTT-TC-AAAGTGGAATT---AAGCAGTC-CGATATCGCCAGAAGTTT-GG--GACTAAATA-GG-TGTA-CA-GT---GTGTA-CTG----TAATAAA-GC-GATATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAGAA-CTT----------AGCATA---CGAGA-C--GAGCGATCA--GT-TTTGAG---------GTAAGTAAAAACCCACCGTGTAG--AGCCTGTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TTCAATCA-GTTC-----A--G-AGAAA----AT--ACTGTTTC-AGA----AG--TTAC-AGTT--AAAAGA-TG-TTCGTTC-CG--TAA-T-AAATA---------T-CACAG-ACG-T-GTTGT------TAGAAAAAAACA-TCCGAAT-TCGAGAAACGAACATTAAAA-AGCGCGA-GACATGGGCTAG-AGGAAA-AAGAC-ATT------GGAAA-GTTG-AT--AATGATTGGAACCGTTGTGATATTttctgatgaatgtaaagtgataattggggaaaataaccgcgtatatgcgtatatgtgtggcggaggcattgagaagagtggttgcccagtgcattagtcacggtcgcggcgctaaagtcagcatgatgattttgggggtatctgcggaactgaaccacgttactttgacatgctttgtaaatggtaacataaaacgcccagagatacatagcaatcatagactatgaattatgaccagttgttaccaggtatttccctcagaatgactgtattat
gi|5 : TTAGTAAAAACGCATCGTGTAGGCAGCCCTTAGAATGTACTGCTGTGACGTTG-AA---------ATTATGTCGGGC---AAAGACTTCAATCATGTTC-----AT-G-AGAAA----ATC-ACTGTTTC-AGA----AG--TTAC-G--T--AAAAGA-TG-TTTGTTC-CG--TAA-TTAAATA---------G-CACAG-ACG-TTGTTGT------TAG-AAAAAACA-TCCGAATCTCGAGAGACGCACATGAAAATAGCGTGTCGGC-TGGGCTAGAAGGAAACAAGCA-ATT------GG-AA-GTTG-AT--AATGA-TGG-ACCGTGTTGATATT
gi|6 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--C-TGGAGAAACAAAGCCT--C-GAACGGGAAGGAAG-----------AAAAAAACTT----------ACCA-G---TGAGAAT--GAACAATCA--G---------------------ATAAAAACCTCCTATGTAG--AGCCTTTGAAA-----------------G-AT---------A-TAC--C---CACAAAGGA-TACAATAATTTTC-----A--GAAGAAA----ATTGACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA---AAACA---------T-T-CGA-AC---------------TAGAGAGAA----------------------AGCATAAAAA-AGCGTGT-GAC-CGGGCTAG-AGGAAA-GAGGC-ATTCGCGAGGGGAA-GTTG-AT--GGTGACAGGAACC--CG-GATATTcttctgatgaaatgtaatagtggtacttggacgaaaataaccgcgtcacaatggtgtgcggaagcgcctctggagcagagtgggtttgccccaattttttttgcattagccggctctgcgggctcacggtccatgagcatgatgctttgggggtgtatctgcttgaatggaccaggtatctctttgcacagttgctgtaatggctaactataaacgcccagagataaacatagaaaatcatagacaatgaattgtggccagttgtctgcaaggcattcagttcctagaacga
gi|7 : G----TAATAAA-GC-GGTATGT------GGAGAGA-GGTTC--CGTGGAGAA-CAA-GCCT--C-GAACGGGAAGGAAG-----------AAAAAA-CTT----------ACCATG---TGAGA-T--GAACAATC------------------------AGTAAAAACCCTCCATGTAG--AGCCTTTGAAA-----------------G-AT---------ATTAC--C---C---AAAGA-TACAATAAT-TTC-----A--G-AGAAA----AT--ACTGCTTC-AGA----AG--TTAC-AGTG--AAAAGA-TG-AT-------G--GAA-A-AAACA---------T-T-CGA-AC---------------TAG---------------------AGAGACAAGCATAAAAA-AGCGTGT-GACACGGGCTAG-AGGAAA-GAGGC-ATTCGCG--GGGAA-GTTG-AT--GGTGACAGGAACC-CTGGGATATTttctgatgtaatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaaagtagtgtgttgccccaatgcattagtcccgggtgtgatgggccaggt
gi|8 : GGTGGATCATT-AATATGTAT--AAACAA--------A--TG-GCGCCTCCGTG-T--GGTCA-CTCGTG-AA-TTTCAA-CTTTTTTAATTTTACCTTTTAATCC--TTTTTAAATAGCATGTGTCCATAAATATGATCATTACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAATCTACGGGAATGTGACGTCAATATTT-CTCTTGTACGCACTG-TAATACGTTCAGTTTGTTCATGTAAAT-C-AGAGGTATGGGGAAA-GTCGAAAGATTTATCACCAA--CTAAAACAAACGGGTTGTAAATAGCTT-TCAAAAGTGGAATA---TAGCAGTCTTGATATCGCCAGGAGTTT-GGGTGACTAAATA-GG-Tttctgatgtatgtaaagtggtactttgagaaaataaccgtgtatttgtgtggcggagacccagagaagagtggttgccccaatgcattagtcccggtggtgatgggccaggt
gi|9 : agcGGTGGATCAT--AATAT-TAT--AAACAA--------AA-TG-GCG--TCCGTG-T--G-TCGGCTCGTG-AAAGTTCAA-CTTTTTTA--TTTACTTTTTAATCC--TCTTTAAAT-GCATGTGTCCATAAATA-GATCAT-ACA-TATGGAC-AA-A-TGACACC--AC--GTATTATAAT-TA----GATGTGACGT-AATATTC-CTTGTG-ACGCATTG-AAATACG-TCAGTTTGT--ATGTAAA--C-AGAGG-ATGGGG-AA-GTCGAACGATTTATCACCGAGCTTAAAAC-AAAGGGTTGTAAATAGCTT-TC-AAAGTGGAATTTTAAAGCAGTC-CGATATCTCCAGGAGTTT-GG--GACTGAATAGGG-TGT--CACGT---GTGTG-CTG----tgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CCAGAGCATGATGCTTTGGGGGTGTATCTGCTGTGAATGGACCAGGTTATCTGTTTGACAGTGCTGTAATGGTAACTATAAACGCCCAGAATACATAGAAATCATAGACACATGAATTGTGGCCAGTGTTGCCAGGCATTCGTTCC
Unaligned ( gi|18 ): TAATATTCCTAAAACTTGAAAGACAACACTTGTGACGGGAAGTTTGCATATGTATGGTGGCATATTTCTGCCACCA