lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111111111 55555555555555555555555 2 2 99999999999999999999999999999999 11 44 55 777 22222222 1 5555 1 2 333 2 11 2 333 22 33333 222 2222222 333333 888888888888888888888 22 5555555555555 22 222 1 11 1 2222 3333 1 11 33 1 2 6666666 1 222 1 555 1 1 55555555555 3333333 55555555 1 1 333333333 111 2 11111111 111111 111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 222 2222222222 7777777777777777777777777 1111 33333333333 11 33333333333333 22222222222 55555555555555 666666666 6666666666666666666 1 1 3333333 11 222 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 3 111 444 111 44444444444444444444444 111 11 2222 1 333333333333
lowQualScore : 5 44444444444444 11111111111111111111111 0 0 3 77777777777777777777777777777777 88 22 55 000 55555555 2 2 5 7777 5 4 0 000 0 55 7 8 000 4 77 33333 000 4 5555555 3 888888 333333333333333333333 4 4 4 00 7 8888888888888 00 777 999 3 99 3 1111 66 4444 6 2 88 11 7 7 3 0 2222222 5 666 6 5 000 3 7 7 3 7 7 99999999999 7777777 7 00000000 3 6 1 4 4444 4 4 2 55 333333333 222 4 4 8888 4 44 3 4 44444444 444444 55 3 55 3 55 3 111 3 3 3 3 7777 3 666 2 3 666 99 55 666 666 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 8 8 8 11 8 8 333 9999999999 8 8 8 8 3 2222222222222222222222222 8 8 3333 8 44444444444 11 22222222222222 5 8 0 77777777777 22222222222222 0 444444444 5555555555555555555 0 2 0 8888888 11 444 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 11 8 0 333 0 5 8 444 8 8 8 8 444 3 8 44444444444444444444444 8 8 444 11 5555 8 8 7 3 999999999999 6
lowQualScore : . .............. ....................... . . . ................................ .. .. .. ... ........ . . . .... . . . ... . .. . . ... . .. ..... ... . ....... . ...... ..................... . . . .. . ............. .. ... ... . .. . .... .. .... . . .. .. . . . . ....... . ... . . ... . . . . . . ........... ....... . ........ . . . . .... . . . .. ......... ... . . .... . .. . . ........ ...... .. . .. . .. . ... . . . . .... . ... . . ... .. .. ... ... .. ......................................................................................................................................................................................................................................................... . . . . .. . . ... .......... . . . . . ......................... . . .... . ........... .. .............. . . . ........... .............. . ......... ................... . . . ....... .. ... . ................................................................................... . .. . . ... . . . ... . . . . ... . . ....................... . . ... .. .... . . . . ............ .
lowQualScore : 0 00000000000000 00000000000000000000000 5 5 5 55555555555555555555555555555555 00 55 00 555 00000000 5 5 5 0000 5 0 0 000 0 88 3 7 555 0 55 55555 555 0 5555555 0 555555 000000000000000000000 0 0 0 77 3 0000000000000 00 000 333 3 77 3 2222 55 8888 7 3 33 00 3 3 3 0 0000000 0 555 0 5 000 3 3 3 3 3 3 33333333333 7777777 3 33333333 3 7 7 4 6666 4 0 0 55 888888888 555 1 0 5555 0 88 0 0 55555555 111111 00 6 00 6 00 6 999 6 6 6 6 7777 6 444 1 6 444 44 00 444 444 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 0 0 22 0 0 000 0000000000 0 0 0 0 2 0000000000000000000000000 0 0 0000 0 44444444444 00 00000000000000 0 0 2 22222222222 22222222222222 2 555555555 5555555555555555555 0 5 0 8888888 88 888 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 0 0 222 8 6 0 000 0 0 0 0 000 2 0 88888888888888888888888 0 0 000 00 4444 0 3 3 3 555555555555 0
consensus : NNATGGATAAATGGTGTACACNNNNNNNNNNNNNNATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAGAAAACAGATCAAATTGNNTTATC-TATAATAAAGTATGAGTAATTCGGAAAAAGG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTTTANTNTATCCAGGAATT-GGAATGTGTCTGGNTTGTTTCGCAAACGGCGGACCGAGATAGN-GTTCCT-TTTGCNCTTTTGAAANTGGTCGAAANCGAAGCTCTGTTNATCTGCGANTATGNAGGCACCTCCTGAAAA-CGCCNAATGACTTGCGGCAGCGANTNTGANAATT-ATTTAAAAATAT-N-GCC-----A-TATGCAGG-TGAAA--TTCTTCCTCATTTAA-ATG-TTAGT-ATCCG----GNNCCGGTTT--TTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCATGG-TTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTAATCACAGAAGTATGGAGNCNCTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAA--ATA----CAAGCC-----A-TATGCAAGTGAA-T-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCA--A---T--TT---AATGT-G----A-CAT-T-AAAGCC-TCA--------TTAAATT------CA--A-AA--TA-TTTA--A-T-G-TGA-C-A-TT-AA----G-TTC---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATGA-------ATTAAC-GTG-GACG--TTNNAA--G-TCCTCA-A-TT-TT--AATTGAAGGTT------TGG--G--GGCT----A-CAT--TAAGTC---GGC--AT-TAAATAT-T-G-----CG--GCCT-TAC-----C--NTGTATGGC-G-----TG-ACG-CTTG--GGCCTT-TG--A-TG---AAGCTA--TT-----AGGNT---CACC-GNGGAGT-G-ATTTT-C-GC-TCAA-AAA-TTAAG-----ACTC-GAC-TAG-GAA-AT-TCGGA--TG-GT-T-A--AAT-T-T-----TT-CC-GT-A--G-ACGACAGAG-TTG----GTTG--AA------A-CCA-T-AGCACGA-TTAGGCCTAATCG--AN--ATGAAACAG-------A------TAGGTCACCAA---TC-CCACATACCACCA--TAAACTAATGA--GAAAT-ACA-ATGCATAATG-C-GTCCAAACAAAAA--CAA-CAC-TGTTNNAACACGC-AG-----GCTCGC----CTCGACG--TTTTGT--TTA--CTG---------CT-------A------ATAA--GGAGT-GA-CGTC-ATTTTGTGTGT-TGT-A-AT-ACG-TA-AG-A---CGATCGA-CG-AGGCC-GGCGGCGA-TCT---AAC-AAT-A---TA--TAT--NAACAAA-GGGGCGATTAAAAAG-TGAGCAGTTACAGCTTGGAAAAACA
Reference ( gi|3 ) : ATATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAATTGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTTG-TAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAGC-GTTCCTCTTTGCT--TTTGAAAAT--TCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTA-AC-C-TTCTGAAAACCG-TAAATGA--------AGCGAATATGAAAATT-ATTTAAAAATAT-T-GCT-----A-TATGCAGG-TGAAAAATTCTTCCTCATTTAA-ATGATTAGT-ATCCA----GTGCCAATTT--T-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCATGG-TTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATATA----TAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCA--A---T--TT---AATGT-G----A-CAT-TTAAAGCC-TCA--------TTAAATT------CA--A-AA--TA-TTTA--A-T-A-TGA-C-A-TT-AA----G-TTC---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATGA-------ATTAAC-GTGAGACACTTTTTA---G-TCCTCA-A-TT-TT--AAT-GAAG---------TGG--G--GGCT----A-CAT--TAAGTC---GGC--AT-TAAATAT-T-G-----CG--GC---TAC-----C--ATGTACGGC-GCA---TG-ACGACTTG--AGCTTT-TG--A-TG---AAGCTA--TT-----GGG-----CAC--ATGGAGT-G-ATTTT-C-AC-TCAA-AA--TTAAG-----ACGC-GAC-TAG-GAA-AT-TCGGA--T--GT-T----AAT-T-TG----TT-CC-GT-A--G-ACGACAGAG-CTT----GTTG--AA------A-CCA-TTAGCACGA-TTAGGCCTAATCG--AC--ATGAAACAG-------A------TAGGTCAC--A---T--CCACATACCAACACGTACAC-AATGAATGAAAT-ACA-ATGCATAATACC-GTCCAAACAAAAA--TAA-CAC-TGTTCTAACACA--AG-----GCTCAC----TTCGAGG--TTTTGT--TTA--CT----------CT-------A------ACAA--GGAGT-GACCGTC-ATTTTGTGTGT-TGTAA-AT-ACG-TA-AG-A---CGATTGA-CG-AGGCC-GGCAGCGA-TCT---AAC-AAT-A---TA--TAT--AAACAAA-GGGGCGTTTAAAAAG-TGAACA-TTAC-ACTTGGAAAAATA
gi|11 : ATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA---CAAA--AA--TGTTTTATT-TATAA----GTATGAGTAATTCGGAAAAAG--TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGC
gi|8 : ATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAATTGAATTATC------TAAAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT---TGGTTTG-TA--TTTAATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAGG-GT-CCT-TTTGCTCTTTTGAAAAT--TCGAA-GCGAAGCTCTGTTAATTTGTAAT-ATATA-AC-CCTTCTGAA---CGCTAAATGA--------AGCGAATATGAAAAT--ATT-AAAAATAT-TTGCC-----AATATGCAGGCTGAAATCCTCTTCCTCATTATA-ATGATTAGT-ATCCATGCAGTGCCAATTT--TTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTT-CATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCACAGAAGTATGGAGT-TCTCCTGAAA-TGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTTAAA---ATAGGCCCAAGCC-----ATTATGTAAGTGAA-TTC---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATA---T--TT---AATG--G----A-CAT-T--AAGCT-TCA--------TTAAATTC-----CA--A-AA--TA-TTTA--A-T-G-TGA-CAA-TT-AA----G-TTC---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT---------ATTAAC-GT
gi|9 : -GTTCCTTTTTCAG--TTTGAAATTGGTCAAAATC--AACT---TTTATC-ACGAATATGGAGGCAC-TCCTGAAAA-TG-CTAATGACTTGCGGCAGCGATTTTGATAATTAATTTAAAAATATAA-GCC-----A-TATGCAAG-TGACAAGTTCT---TCATTTAATAT--TTAGTCATCTG----GACCCGGTTTG-T-CAT
gi|5 : tttaaaacaattgtccattgcggtgaaattccagtgccaatttttcatatcagaaatctcgaccgaactaaacaattatctttcatgAATT-TTTTAAAAATAA-G-GCCTAATCA-TATGCAG--TGAA---TTCTTCTTCATTTAA-ATATTTTAT-ATCTG----GACCCGGTTGCAT-CAAATTCTAAATcaatattctaatgtgacattaaacctcattaaatcaaaaatattttaatgtaacattaagttccgttgtatcaacgattcaatttatacatattaacggtgaacaattaacagtcctcattt
gi|9 : tggtaatgactcggaagagatttgTCCA----GTGCCAATTT--TTCATATCAGAAATCTCGA-CCGAACTAAACAATTA-TCTTTCATGG-TTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAA--ATA----TAAGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCA--ATATT--CT---AATGT-G----A-CAT-T--AAACC-TCA--------TTAAATC------AA--A-AA--TATTTTA--A-T-G-TAA-C-A-TT-AA----G-TTC---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT------------ATTAACGGTGA-ACAATTAACA---G-TCCTC--A-TT-Tgtggacattaagcctcttaaattcaaaaattatttaatgtgacattaatcccgtgttcaagattcatgtatacatttacgtgacattaacgtcccaatttttaaatgaagggttgtgctatcattaagtcggcattaaatataggcggcttacctaatgggtgacgattgagcctttgctaagctattgggtcaccgaggaagtgatattcaacatcaaaaagttaagaccgactaggaaattcggatgtgtaattgtttcctgtaagacgacaggttggttgaaaccatgagacgattaggcctaatgaaacataaaacagataagataccaattctcacataccactacgtacactaatgaaaataacaatgcataatcgtccaaacaaaaacaacacttgttctacgaagctctcgagttttttaattagtaacaaccaaggagtgacgtcatttggttgtattactaagtacgattgacgaaggcgcagcggctctacaatgatatatcaacaaaaggcattttaaaaagtgagcagttacaacttggaaaatagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|23 : tttaaaacaattgtccattgcggtgaaatAAATCTCGATCCGAACTAAA--ATT-ATC-TTCATGG-TTCCTTTT
gi|5 : TGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-------AGGCCTAATCA-TATGCA-GTGAATT-C---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCA--A---A--TTCTAAATGTGG----A-CAT-T--AAGCC-TC---------TTAAATT------CA--A-AAATTA-TTTA--A-T-G-TGA-C-A-TT-AA------TCC---CG-T-G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-------------TT-AC-GT--GACA----TTAAC-G-TCC-CA-A-TT-TTTAAAT-GAAG----------GGTTG--TGCT----ATCAT--TAAGTC---GGC--AT-TAAATATAG-G-----CG--GCT--TAC-----CTAATG---GG--------TG-ACGA-TTG--AGCCTT-TG--C-T----AAGCTA--TT-----GGGT----CACCGAGGAAGT-G-ATATT-CAACATCAA-AAAGTTAAG-----AC-C-GAC-TAG-GAA-AT-TCGGA--T--GTGT----AAT-T-GT----TT-CCTGTAA--G-ACGACAG-G-TTG----GTTG--AA------A-CCA-TGAG-ACGA-TTAGGCCTAAT-GAAAC--ATAAAACAG-------A------TAAGATACCAA---TTCTCACATACCACTACGTACACTAATGA---AAATAACA-ATGCATAAT--C-GTCCAAACAAAAA--CAA-CACTTGTTCT---ACG--AA-----GCTC-------TCGA-G--TTTTTTAATTA--GTAA--------CA-------A------CCAA--GGAGT-GA-CGTC-A-TTTG---GT-TGT-A-TT-AC--TA-AGTA---CGATTGA-CGAAGGC---GCAGCGGCTCT----AC-AATGA---TA--TAT--CAACAAA-AGGCATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|7 : T-ATCTGGGACC-CC-G-TTG-T-A--TCA--A---TATTT---AATGT-G----A-CA--TTAAAGCCTTCA--------TTAAATT------CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGGATCGTACTATTAAC-GT--GACA--TTAAA---GTTCCTCA-A--T-TT--AAT-GAAGGTT------TGG--G--GGCT----AGCAT--TAAGTC---GGC--AT-TAAATAT-TGG-----CC--GC---TTC-----C--TAGT--GGC-------TG-GCG-CTTG--GCCTGT-GG--ATTG---AAACTA--TT-----AGGT----CAC--CGGGAAT-G-ATTTT-C-TC-TCAA-AA--GAAAG-----AC-C-GACTTAG-GAA-ATGTCGGA--TG-GT-TGA--AAT-G-T-----TT-TC-GT-A--G-G-GACA-AG-TTG----GTTG--AA------A-CC----------A-TTAGGTCTTATCG--AC--ATGAAGCAGATAGCCTA------TAGGTAACA-A---T--CCACATACCACCA---AAAC-AACGA--GAAAT-ACA-ATGCATAATG---GTCCAAACAAAAAACAAA-CACATG--AAAACGTA--GA-----ACT-GC----CTCGATT--TTTTGT--TTA--CG----------CTAGTAGGAA------ATAA--GGAGT-GA-CGTC-ATTTTGTG-GTCTGT---AT-ACGCTA-AG-A---CGATCGA-CG-ACGC---GAGGGGA-TCT---AAA-AAT-A---TA--TATC-AACCAAA-GGGGCGATT-GAAAG-TGAACA--TAC-GC----AAAAACtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|6 : c-ACCCGG-ACCACG-G-TTG-T-AAATCA--A---TA-TT---AAT-T-G----AACAT-TAAACCCC-TCA--------TTAAATT------CA--A-AA--TA-TTTA--A-T-G-TGA-C-A-TT-A-----G-TTC----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTCAC------ATTAAC-G-GTGACA--TTAAA---G-TCCTCA-G-TT-TT--AAT------------------------------A-CA--------C---GGCGCAT-TAA-TAT-G-GG----CG--GT---TAC-----C---TA-ATGGC-------TG-AGAGCTTG--GGCCTG-TG----TG---AAGCTA--CT-----AGGGT---CACC-GCGTAGT-G-ATTTC-CCGC-TCAATAA--TTAAG-----ACTG-GAC-TAG-GAATAT-TCGGGACT--GT-G----AAT-G-T-----TT-CC-GT-A--G-ACGACAG-G-TTG----GTTG--AA------A-CCAATTAGCACGAATTATGCCTA--CG--GAGAATGAAACAG-------A------TAGGTCACCAA---TC-CCACATACC-AC---TAAACTAATG-ACGAAAT-ACAGATGCATA--ACTGGTCCAA----------AA-CA----TTC-AACACACGAGAACTAGCCTGC----TGCTACGATTTTTGT--TCA--CT----------GT-------AGTAGGCATAA--GGA-T-GA-CGTC-AATTTGTGTGT-TGT-T-AT-ACG-TA-AG-A---C-AGTGATCG-AGGGC-GG-ATCAA-------AAC-AAT-A---TA--TAG--TAACAAA-GGGGCaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|13 : catcttccta-ATCAGG-ACC--G-G-TTG-T-A--TCAATA---T--TT---AATTT-G----A-CA--TTAAAG-C-TCA--------TTAAATT------CA--A-AA--TA-TTTA--A-T-G-TGA-C-A-TTAAA----G-TTC---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATGA-------Acgatcatagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|2 : aagtgtccactgtcattgttctaccGG-ACC-CG-G-TTG-T-A--TCA--A---TATTT---AATGT-G----A-CAT-T-AAAGCC-TCA--------TTAAATT------CA--A-AA--TA-TTTA--AAT-G-TGAAC-A-TT-CA----G-CTCTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAGC-------ATTTAA-GCGTGACG----TTAAAAG-TCCTCA-ACTT-TT--AATTGAAGGTTCT----TGG--GCGGGCT----A-CATATTAAGTC---GGCCAAT-TAAAT-T-T-G-----CGCGGCCT-TAC-----C--TTA-ATGGCTG------G-ACG-CTTG--GG--TC-TG--G-TGTGAGAGCTA--CT-----AGGGTCAGCGC--G-GGAGT-GCATTTT-C-GC-TCAA-AA--ATAAG-----AAGCCGAC-TAGCGAA-AT-TCG-A--T--GT-GCA--AATGT-TC----TTGCT-GT-A--G-ACGACAGAGTCTG----GTTG--AA------AACCA-T-AGCACGA-TTAGGGCT-ATCG--AG--ATAAAACAG-------ATAGGCCTAGGTCAC--ACTCC--CCAGATACCACTA---AAGT-AATGA--GAAAT-A-A-ATGCATAATGGC--TCCAACAAAAAA--CAAGCAC--ATAGCAAAACGT-AG-----GCTCACGGGGCTCGATC--TTTTGT--TGAACCTGTAGTGAAGGCC-------A------ATAAAGGAAGT-GA-CGTCAATTTTGTGTGT-TGT---AT-ACG-TAGAG-A---CGATCGA-C----GCCAGGC-GTGA-TTA---AAC-AAT-A---TA--TATTGCAGCAAAGGGGGCGATTAAAAAGCTGAggaatcctttcgattaaaccgtcattaaaatcctggatttaatgcacgtttctttgggcatcattaaacgttcattaatatggc
gi|15 : ataaacaGG-ATC-CGCG-TTG-TTA--TCAG-A---A--TT---AAT-T-G----A-CAT-T-GAAGTC-TCA--------TTAAA-T------CA--A-AA--TA-TTTATTA-C-A-T-A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA---Tggctacgcccaaaaacaaaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|1 : -ACC-TG-C-TTC-TCA--TTA--G---A--TT---AATAT-GCTGCA-CATGTTAAGTCC-TCAGACATTACCTACATTTGCTCTCA--ATAA--TA-TCTA--A-TTG-TGA-C-AATC-CATCCCG-TTC---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTTA-------AT-GAC-GT-AGACGATTTCAAA--G-TCCTCATA-TTCTT--AATTGAGGGTATGATTGTAG--GT-GGCCTGTGG-CAT--TAAGTCTTTGGC--ATATAACTAT-T-GAGGACCG--GCCTTTACATGTCC--ATCTAATGA-GCAGAATGGACG-CTTGCAAGGTCTGTGCAA-TGCC-AAGTTACATTCACGCGGG----------ATGAAGTAG-ATTTTTC-GC-TCAA-AAAATCAAGGATAGACTC-GAC-TAG-AGA-AA-TCGAA--TGGGT-TATGGAAT-TATGCTTCTT-CT-GT-GTCGTACGACACAG-CTCTCTGGTTGGTAATCCTATA-CC--TAAGCACGA-TTAGaatgtaaggacatgtcacaaaacgtagatcattaaagtccgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|19 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaTG-T-A--TCAT-A---C--TTCA-GATGT-A----A--AT-T-AATGTC--CA--------TTAGATT------CATAA-AG--TA-TTTA--A-T-G-TGA-C-C-AT-AG----A-TTC---TG-T-G---T--TC--AA--GTA---TTT-A---------Taggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|21 : gcaAATA------CT--A-AA--TA-TTTA--A-T-G-TGA-C-A-TT-AA----G-TTC---CGTT-G---T-ATC--AA--CGA---T
gi|1 : tcA--GCAGTAGACCGTC-TCTTTGTGTGT-TGTAACGTAATG-TC-AA-ACCCCAATCGA-CG-----C-AGAGGCGA-TCTCCAAACTAAT-AATTTATTTAG--AGACAAA-ataata
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11111111
lowQualScore : 11111111111111 11 1 222222 1 1 1 11 22222222 222 11 2222 11 22 1111 22 33 2 11 1 22 55 1 33333 6666 11 1111 44444444 1 1 2 2 2 44444 4 2222 11 11 1 1 1 2 2 2 222 111 1 1 33333333 2222222 2222222 111 222222222 111 5555555555555555555555555555555555555555 222222222 11 11 444444444444444444444444444 111 11 66666666666666666666666666666666666666 111 11 33333 1 2222222 111 111 11111 1 33333333333333333333333333 11 111111 11 222222222 111111 222222 2222222 1 11 3333333 1 11 222 3333333333333333333333333333333333333333 2222 77777777777777777777777777 2222 1111111 111 22222222 11111 111 111 1 11 3333333
lowQualScore : 3 44444444444444 88 0 2 444444 3 3 4 5 99 22 88888888 6 000 88 5555 33 22 1 1 7 5555 7 1 44 0 88 3 44 7 3 33 1 55 5 1 1 33333 1 1 8888 6 88 2222 55555555 1 1 1 5 5 0 1 0 0 66666 88 0 8888 6 22 22 7 2 33 0 5 0 3 3 7 3 6 555 7 777 0 3 3 0 3 3 3 66666666 6666666 0 7777777 8 0 000 5 0 4 4 4 4 4 8 55 999999999 222 2 3 3 3 3 7 3 3 44 3 44 3 44 3 3 3 3 3 3 3 7777 3 555 3 555 77 44 555 555 77 8888888888888888888888888888888888888888 66 4 000000000 66 5 5 5 6 00 888888888888888888888888888 99 111 88 6 3 6 77777777777777777777777777777777777777 6 6 6 111 33 22222 99 6 1 4 2 7 666 6 1111111 222 6 6 444 66666 3 6 6 6 6 99999999999999999999999999 99 6 55 6 99 666666 55 6 555555555 6 66 444444 333333 6666666 0 11 8 6666666 0 0 99 8 8 8 666 0 0 8 8888888888888888888888888888888888888888 2222 4 44444444444444444444444444 3333 6 6 6 6 7 6 8888888 6 6 6 111 3 6 99999999 1 1 88888 6 6 222 8 8 8 111 0 2 55 1111111
lowQualScore : . .............. .. . . ...... . . . . .. .. ........ . ... .. .... .. .. . . . .... . . .. . .. . .. . . .. . .. . . . ..... . . .... . .. .... ........ . . . . . . . . . ..... .. . .... . .. .. . . .. . . . . . . . . ... . ... . . . . . . . ........ ....... . ....... . . ... . . . . . . . . .. ......... ... . . . . . . . . .. . .. . .. . . . . . . . .... . ... . ... .. .. ... ... .. ........................................ .. . ......... .. . . . . .. ........................... .. ... .. . . . ...................................... . . . ... .. ..... .. . . . . . ... . ....... ... . . ... ..... . . . . . .......................... .. . .. . .. ...... .. . ......... . .. ...... ...... ....... . .. . ....... . . .. . . . ... . . . ........................................ .... . .......................... .... . . . . . . ....... . . . ... . . ........ . . ..... . . ... . . . ... . . .. .......
lowQualScore : 0 00000000000000 33 3 0 777777 3 3 3 7 00 00 00000000 7 777 33 0000 33 00 0 0 3 7777 3 0 00 7 33 7 33 3 3 00 0 00 5 0 0 00000 0 0 5555 0 55 0000 00000000 0 0 0 5 5 0 0 0 0 00000 00 0 3333 0 00 00 3 5 88 0 5 0 3 7 3 7 7 333 3 000 0 2 2 0 2 2 2 55555555 0000000 8 8888888 0 8 222 7 1 4 4 4 4 0 0 55 777777777 555 5 6 6 6 6 3 3 3 66 3 66 3 66 3 3 3 3 3 3 3 1111 3 888 3 888 88 66 000 888 11 1111111111111111111111111111111111111111 11 4 666666666 66 7 7 7 7 88 000000000000000000000000000 22 777 33 7 2 7 55555555555555555555555555555555555555 7 7 7 777 77 22222 22 7 7 0 5 5 888 7 7777777 888 7 7 333 77777 8 7 7 7 7 77777777777777777777777777 22 7 88 7 88 888888 88 7 222222222 7 88 000000 000000 0000000 0 22 0 4444444 6 6 00 0 0 0 222 8 6 0 4444444444444444444444444444444444444444 4444 0 44444444444444444444444444 3333 7 7 7 7 3 7 8888888 7 7 7 777 7 7 00000000 0 0 00000 7 7 000 0 0 0 888 0 5 88 0000000
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGAC-AAATTGNATTATC-TATAATGAAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTTGGTAG-TTTACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG--GACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAAT--TCGAAAGCGGAGCTCTGTTAATTTGTAANTATGTA-ACACCTTCTGAAAACNNTAAATGA--------AGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATC----CAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGA-A-TT-CTTCT-TCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCA--A---TA-TT---AATGTG-A-CATT-AAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------ATT--AAC-GTG-GA-C-A--TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAAGTC---GGC--AT-TAAATAT-TGG----CG--GCCTTACC-TGT-------ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACCAC--CG--TAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GTTCCAANACGTAGG--CTCGC----CT----CGACG--TTTTGTTNA--CT---------GC--TAG------ATAA----GGAGT-GA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGATT--AAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGATAAATGGTGTACACNNNNNNNNNNNNNNATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAGAAAACAGATCAAATTGNNTTATC-TATAATAAAGTATGAGTAATTCGGAAAAAGG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTTTANTNTATCCAGGAATT-GGAATGTGTCTGGNTTGTTTCGCAAACGGCGGACCGAGATAG-NGTTCCT-TTTGCNCTTTTGAAANTGGTCGAAANCGAAGCTCTGTTNATCTGCGANTATGNAGGCACCTCCTGAAAACGCCNAATGACTTGCGGCAGCGANTNTGANAATTATTTAAAAATA-TNGCC-ATATGCAGG-TGAAA--T--TCTTCCTCATTTAAATG-TTAGTATC----CGGNNCCGGTTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTAATCACAGAAGTATGGAGNCNCTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----CA--AGCC-----A-TATGCAAGTGA-A-T--CTTCT-TCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCA--A---T--TT---AATGTG-A-CATT-AAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------ATT--AAC-GTG-GA-C-G--TTNNAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAAGTC---GGC--AT-TAAATAT-TG-----CG--GCCTTACCNTGT-------ATG-GCG---TG-AC-G-CTTG---GGCCTT-TG--A--TG--A-AGCTATTAGGNTCACCGNGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACCAC--CA--TAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GTTNNAACACGCAGG--CTCGC----CT----CGACG--TTTTGTTTA--CT---------GC--TA-------ATAA----GGAGT-GA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--NAA-CAAA-GGGG-CGATT--AAAAAG-TGAGCAGTTACAGCTTGGAAAAACA
gi|1 : G-A-CATT-A---CC-TACATTTGCTCT-CA--ATAA--TA-TCTA--A-TTGT-GA-C-AATC-CATCCCGTT-C---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTT----A-------AT---GAC-GTA-GA-C-GATTTCAAAGTCCTCATA-TTCTT-AATTGAGGGTATGAT--TGTAGGT-GGCCTGTGG-CAT--TAAGTCTTTGGC--ATATAACTAT-TGAGGACCG--GCCTTTACATGTCCATCTAATGAGCAGAATGGAC-G-CTTGCAAGGTCTG-TGCAA--TGCCA-AG---TTACATTCAC-GCGG-G-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGACT-AG-AGA-AA-TCGAA--TGG-GTT-ATGGAATTATGCT-T-CTT--CT-GTGTCGTACGACACAGCTCTC-TGGTTGGTAATCCTA--TACCTAAGCACGA-TTAG
gi|1 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaA----GCAGTAGA-CCGTC-TCTTTGTGTGT-TGT-AACGTAATG-TC-AA-ACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-Aaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcagacattacctacatttgctctcaataatatctaattgtgacaatccatcccgttccgttgtgatcgaaacgaacttttaagctaggatcttgttcatgttaatgacgtagacgatttcaaagtcctcatattcttaattgagggtatgattgtaggtggcctgtggcattaagtctttggcatataactattgaggaccggcctttacatgtccatctaatgagcagaatggacgcttgcaaggtctgtgcaatgccaagttacattcacgcgggatgaagtagatttttcgctcaaaaaatcaaggatagactcgactagagaaatcgaatgggttatggaattatgcttcttctgtgtcgtacgacacagctctctggttggtaatcctatacctaagcacgattagaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGACAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAAAG--TTCTT--CCTCAT-T-TGGTTTGGTAG-TTTACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGC-GACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : AAGTG----T--CCACTGTCATT--G-T-TCTACC-ATCAGG-ACC--G-G-TTG-T-A--TCA--A---TATTT---AATTTG-A-CATT-AAAGC--T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TTAAA----GTT-C---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATG----A-------A
gi|15 : GG-ATC-CGCG-TTG-TTA--TCAG-A---A--TT---AAT-TG-A-CATT-GAAGTC-T-CATTAAA--T-CA--A-AA--TA-TTTATTA-C-AT--A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA----TA-A---------TGTAAG------GAC-ATGTCACA-------A----AAC-GTA-GATC-A--TT-AAAGTCCggaatcctttcgattaaaccgtcattaaaatcctggatttaatgcacgtttctttgggcatcattaaacgttcattaatatggc
gi|19 : TG-T-A--TCAT-A---C--TTCA-GATGTA-A--ATT-AATGTC---CATTAGAT-T-CATAA-AG--TA-TTTA--A-T-GT-GA-C-C-AT-AG----ATT-C---TG-T-G---T--TC--AA--GTA---TTT-A---------Tgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCA--A---TATTT---AATGTG-A-CATT-AAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--AAT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAG----C-------ATTTAAGC-GTG--A-C-G--TTAAAAGTCCTCA-ACTT-TT-AATTGAAGGT----TCTTG--GGCGGGCT----A-CATATTAAGTC---GGCCAAT-TAAAT-T-TG-----CGCGGCCTTACCTTA--------ATG-GCT---GG-AC-G-CTTG---GGTCTGGTG-----TG--AGAGCTACTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGACT-AGCGAA-AT-TC-GA--T-G-TGC-A---AA------TGT-TCTTGCT-GTA--G-ACGACAGAG----TCTGGTTGA-AAACC-A--T-----AGCACGA-TTAGGGCT-ATCGAG--A--TAAAACAGATAGGCCTAG-------GTCA-CACTCCC-CAGATACCAC------TAAAGTAATGA--GAAATA--A-ATGCATAA-TG-GCTCCAACAAAAAA-CAAGCAC---ATAGCAAAACGTAGG--CTCACGGGGCT----CGATC--TTTTGTTGAACCTGTAGTGAAGGC--CA-------ATAAAG--GAAGT-GA-C-GTCAATTTTGTGTGT-TGT--AT---ACG-TAGAG-A---CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGATT--AAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATTA-TC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAATTGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTTG-TAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG--GACCG-GATAG-CGTTCCTCTTTGC--TTTTGAAAAT--TCGAAAGCGGAGCTCTGTTAAT-TGTAATTATGTA---ACCTTCTGAAAACCGTAAATGA--------AGCGAATATGAAAATTATTTAAAAATA-TTGCT-ATATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATC----CAGTGCCAATTTT-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TATAAGCC-----A-TATGCAAGTGA-A-TTTCTTCT-TCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCA--A---T--TT---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-AT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------ATT--AAC-GTGAGA-C-AC-TTTTTAGTCCTCA-A-TT-TT-AA-TGAAG---------TG--GG--GGCT----A-CAT--TAAGTC---GGC--AT-TAAATAT-TG-----CG--GC--TACCATGT-------ACG-GCGCA-TG-AC-GACTTG---AGCTTT-TG--A--TG--A-AGCTATTGGG--CA-CATGG-A-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGACT-AG-GAA-AT-TCGGA--T---GTT-A---AT------T-T-GTT--CC-GTA--G-ACGACAGAG----C-TTGTTG--AAACC-AT-T-----AGCACGA-TTAGGCCTAATCGAC--A--TGAAACAGA------TAG-------GTCAC--AT--C-CACATACCAA--CACGTACAC-AATGAATGAAATA-CA-ATGCATAA-TACCGTCCAAACAAAAA-TAA-CAC-T-GTTCTAACACA-AGG--CTCAC----TT----CGAGG--TTTTGTTTA--CT----------C--TA-------ACAA----GGAGT-GACC-GTC-ATTTTGTGTGT-TGTAAAT---ACG-TA-AG-A---CGATTGA-CGA-GGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGTTT--AAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-----A--GGCCTAATCA-TATGCA-GTGA-A-TT-CTTCT-TCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCA--A---A--TTCTAAATGTGGA-CATT-AA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTTA--A-T-GT-GA-C-A-TT-AA-----TC-C---CGT--G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-----------------TT--A-C-GTG--A-C-A--TTA-ACGTCC-CA-A-TT-TTTAAATGAAGGG----T--TG--TG----CT----ATCAT--TAAGTC---GGC--AT-TAAATATAGG-----CG--GC-TTACC-TA--------ATG-G-G---TG-AC-G-ATTG---AGCCTT-TG--C--T---A-AGCTATT-GGGTCACCGAGG-AAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGACT-AG-GAA-AT-TCGGA--T-GTGT------AA------T-TGTTT--CCTGTAA-G-ACGACAG-G----T-TGGTTG--AAACC-A--T-----GAGACGA-TTAGGCCTAAT-GAA--ACATAAAACAGA------TAA-------GATACCAAT-TCTCACATACCACTACG--TACACTAATGA---AAATAACA-ATGCATAA-T--CGTCCAAACAAAAA-CAA-CAC-TTGTTCTA---CG-AAG--CTC-------T----CGA-G--TTTT-TTAA--TT---------AG--TA-------ACAACCAAGGAGT-GA-C-GTC-ATTT---G-GT-TGT-ATT---AC--TA-AGTA---CGATTGA-CGAAGGCGC-AGCGGC--TC-T---A-C-AATGATATAT--CAA-CAAA-AGG--C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCA--A---TA-TT---AAT-TG-AACATT-AAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-A-----GTT-C----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTC----AC------ATT--AAC-GGT-GA-C-A--TTA-AAGTCCTCA-G-TT-TT-AAT------------------------------A-CA--------C---GGCGCAT-TAA-TAT-GGG----CG--G--TTACC-TA--------ATG-GC----TG-AGAG-CTTG---GGCCTG-TG-----TG--A-AGCTACTAGGGTCACCGCGT-A-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGACT-AG-GAATAT-TCGGGACT-G---T-G---AA------T-G-TTT--CC-GTA--G-ACGACAG-G----T-TGGTTG--AAACC-AATT-----AGCACGAATTATGCCTA--CGGAGAA--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACCAC------TAAACTAATGAC-GAAATA-CAGATGCATAACTG--GTCC-----AAAA-CA----------TTCAACACACGAGAACTAGC----CTGCTGCTACGATTTTTGTTCA--CT---------GTAGTAGGC----ATAA----GGA-T-GA-C-GTC-AATTTGTGTGT-TGT-TAT---ACG-TA-AG-A---CAGT-GATCGA-G-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGATC--Atagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCA--A---TATTT---AATGTG-A-CATT-AAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGG----ATCGTACTATT--AAC-GTG--A-C-A--TTAAAGTTCCTCA-A-TT-T--AAT-GAAGGT----T--TG--GG--GGCT----AGCAT--TAAGTC---GGC--AT-TAAATAT-TGGC---CG----CTT-CCTAGT---------G-GC----TG-GC-G-CTTG---G-CCTG-TG--GATTG--A-AACTATTAGG-TCACCG-GG-A-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGA--T-G-GTTGA---AA------T-G-TTT--TC-GTA--G-G-GACA-AG----T-TGGTTG--AAACC-A--T--------------TAGGTCTTATCGAC--A--TGAAGCAGA------TAGCCTATAGGTAAC-AAT-CC--ACATACCAC--CA---AAAC-AACGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAAACAAACACAT-G----AAAACGTAGA--ACTGC----CT----CGATT--TTTTGTTTA--C----------GC--TAGTAGGAAATAA----GGAGT-GA-C-GTC-ATTTTGTG-GTCTGT--AT---ACGCTA-AG-A---CGATCGA-CGA-CGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGATT---GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAATTGAATTATC------TAAAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCA--T-TGGTTT-GTA--TTTAATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GG-TCCT-TTTGCTCTTTTGAAAAT--TCG-AAGCGAAGCTCTGTTAATTTGT-AATATATA-AC-CCTTCTG--AACGCTAAATGA--------AGCGAATATGAAAA-TA-TTAAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTT-ATCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAAATAGGCCCA--AGCC-----ATTATGTAAGTGA-ATT--CTTCT-TCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATA---T--TT---AATG-G-A-CATT--AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTTA--A-T-GT-GA-CAA-TT-AA----GTT-C---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT-------------ATT--AAC-GTaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : TC----CAGTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGACA-A--GTTCT-TCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCA--ATATT--CT---AATGTG-A-CATT-AAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTTA--A-T-GT-AA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT----------------ATT--AACGGTG-AA-CAA--TTAACAGTCCTC--A-TT-T
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11 1 222222 1 1 1 22 1 1 22222 1 11 2222 2 1 1111 1 111 1 1 1 11 1 1 2 44 11 1 1 1 1 1 22222 2222 11 1 1 1 1 1 1 1 111 1 1 33333333 2222222 1 111 1 222 8888888888888888888888888888888888888888888888 222222222222 11 444444444444444444444444444 111 11 1111 1111 5555555555555555555 111 33333 1 11 2222222 111 111 11111 1 33333333333333333333333333 11 111111 11 222222222 111111 222222 2222222 1 11 33333 1 11 222 1 44444444 11 22222222 2222 77777777777777777777 1111111 111 22222222 11111 11 11 1 11 3333333
lowQualScore : 1 88 0 1 444444 3 3 0 00 3 1 3 77777 6 7 3 88 5555 3 6 3 7 5555 7 3 0 666 3 3 7 3 88 5 5 0 22 88 22 5 5 5 5 5 77777 22 7 7 8888 7 2 33 0 5 0 3 3 7 3 6 3 7 777 0 3 3 0 3 3 3 33333333 6666666 3 3 0 777 0 5 0 4 4 4 4 4 8 55 8 55 222 2 3 3 3 3 7 555 44 3 44 3 44 3 3 3 3 3 3 3 7777 3 555 3 555 77 44 555 555 77 0000000000000000000000000000000000000000000000 55 55 4 000000000000 9 5 5 5 5 33 777777777777777777777777777 77 77 000 55 5 1 5 2222 4444 6 0000000000000000000 6 6 6 111 6 22222 99 6 1 0 2 11 6 6 1111111 222 6 6 444 66666 3 6 6 6 6 99999999999999999999999999 99 6 55 6 99 666666 55 6 555555555 6 66 444444 333333 6666666 0 11 8 8 33333 0 0 99 8 8 8 666 5 8 6 99999999 1 33 33333333 2222 1 44444444444444444444 9999999 6 6 6 6 7 6 8888888 6 6 6 111 3 6 99999999 1 1 88888 6 6 11 8 8 8 11 0 0 2 55 4444444
lowQualScore : . .. . . ...... . . . .. . . . ..... . . . .. .... . . . . .... . . . ... . . . . .. . . . .. .. .. . . . . . ..... .. . . .... . . .. . . . . . . . . . . ... . . . . . . . ........ ....... . . . ... . . . . . . . . . .. . .. ... . . . . . . ... .. . .. . .. . . . . . . . .... . ... . ... .. .. ... ... .. .............................................. .. .. . ............ . . . . . .. ........................... .. .. ... .. . . . .... .... . ................... . . . ... . ..... .. . . . . .. . . ....... ... . . ... ..... . . . . . .......................... .. . .. . .. ...... .. . ......... . .. ...... ...... ....... . .. . . ..... . . .. . . . ... . . . ........ . .. ........ .... . .................... ....... . . . . . . ....... . . . ... . . ........ . . ..... . . .. . . . .. . . . .. .......
lowQualScore : 0 33 3 0 777777 3 3 7 00 3 0 3 33333 7 3 3 33 0000 3 7 3 3 3333 3 3 7 777 3 3 3 3 00 5 5 5 55 55 00 5 5 5 5 0 00000 00 3 3 3333 3 5 88 0 5 0 3 3 3 3 7 3 3 000 0 2 2 0 2 2 2 00000000 0000000 2 2 0 555 0 7 1 4 4 4 4 0 0 55 0 55 000 5 6 6 6 6 3 222 66 3 66 3 66 3 3 3 3 3 3 3 1111 3 888 3 888 88 66 000 888 11 1111111111111111111111111111111111111111111111 55 55 0 000000000000 0 0 0 0 7 77 111111111111111111111111111 99 99 000 77 7 4 7 1111 3333 7 0000000000000000000 7 7 7 777 7 22222 22 7 7 8 5 88 7 7 7777777 888 7 7 333 77777 8 7 7 7 7 77777777777777777777777777 22 7 88 7 88 888888 88 7 222222222 7 88 000000 000000 0000000 0 22 0 0 00000 6 6 00 0 0 0 222 0 0 0 88888888 0 88 00000000 4444 0 66666666666666666666 5555555 7 7 7 7 3 7 8888888 7 7 7 777 7 7 00000000 0 0 00000 7 7 00 0 0 0 00 8 0 5 88 5555555
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTTG-TAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAAC-CCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT-ACC-TA--------ATG-GCG---TG-AC-G-CTTG---GGCCT-GTG--A--TG--A-AGCTATTAGGGTCACCGC-GGA-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GTNC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGC--TAGCG-------AT-A--A--GGAGT-GA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAATGAAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAANTATGTAACACCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT-ACC-TGT-------ATG-GCG---TG-AC-G-CTTG---GGCCT-GTG--A--TG--A-AGCTATTAGGGTCACCGC-GGA-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GTTCCAANACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGC--TAG---------AT-A--A--GGAGT-GA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
gi|1 : G-A-CA-TTA---CC-TACATTTGCTCT-CA--ATAA--TA-TCTA--A-TTGT-GA-C-AATC-CATCCCGTT-C---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTT----A-------------AT---GA--C-GTA-GA-C-GAT--TTCAAAGTCCTCATA-TTCTT-AATTGAGGGTATGAT--TGTAGGT-GGCCTGTGG-CAT--TAA--GTCTTTGGC--ATATAACTATTG-AGGACCGGCCTTTACA-TGTCCATCTAATGAGCAGAATGGAC-G-CTTGCAAGGTCT-GTGCAA--TGCCA-AG---TTACATTCAC-GC-GGG-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGACT-AG-AGA-AA-TCGAA--TGG-GTT-ATGGAATTATGCT-T-CTT--CT-GTGTCGTACGACACAGCTCTC-TGGTTGGTAATCCTA--TACCTAAGCACGA-TTAG
gi|1 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaAG---------AT-GCTA--GCAGTAGA-CCGTC-TCTTTGTGTGT-TGT-AACGTAATG-TC-AA-ACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-Aaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcagacattacctacatttgctctcaataatatctaattgtgacaatccatcccgttccgttgtgatcgaaacgaacttttaagctaggatcttgttcatgttaatgacgtagacgatttcaaagtcctcatattcttaattgagggtatgattgtaggtggcctgtggcattaagtctttggcatataactattgaggaccggcctttacatgtccatctaatgagcagaatggacgcttgcaaggtctgtgcaatgccaagttacattcacgcgggatgaagtagatttttcgctcaaaaaatcaaggatagactcgactagagaaatcgaatgggttatggaattatgcttcttctgtgtcgtacgacacagctctctggttggtaatcctatacctaagcacgattagaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGA-CAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAA-AG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : -ATCAGG-ACC--G-G-TTG-T-A--TCAATATT--T---AATTTG-A-CA-TTAAAG-C-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TTAAA----GTT-C---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATG----AAGGAATCCTTTCGATT--AAACC-GT-----C-A----TTAAAA-TCCTGG-A--T-TT-AA-TGCACGT----TTCTT--TG--GGCA----T-CAT--TAAACGTT-----C--AT-T-AATA-TG-G----C
gi|15 : aagtgtccactgtcattgttctaccGG-ATC-CGCG-TTG-TTA--TCAGAA-T--T---AAT-TG-A-CA-TTGAAGTC-T-CATTAAAT---CA--A-AA--TA-TTTATTA-C-AT--A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA---T-A-A---------TGTAAG------GAC-ATGTCACA-------------A----AA--C-GTA-GATC-A----TTAAA-GTCC
gi|19 : TG-T-A--TCA-TA-C--TTCAGATGTA-A--A-TTAATGTC---CATTAGAT-T-CATAA-AG--TA-TTTA--A-T-GT-GA-C-C-AT-AG----ATT-C---TG-T-G---T--TC--AA--GTA---TTT-A---------Tgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--AAT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAG----C-------------ATTTAAG--C-GTG--A-C-G----TTAAAAGTCCTCA-ACTT-TT-AATTGAAGGT----TCTTG--GGCGGGCT----A-CATATTAA--GTC---GGCCAAT-TAAAT-TTGCG----CGGCCTT-ACC-TTA-------ATG-GCT---GG-AC-G-CTTG---GGTCTGGTG-----TG--AGAGCTACTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGACT-AGCGAA-AT-TC-GA--T-G-TGC-A---AA------TGT-TCTTGCT-GTA--G-ACGACAGAG----TCTGGTTGA-AAACC-A--T-----AGCACGA-TTAGGGCT-ATCGAG--A--TAAAACAGATAGGCCTAG-------GTCA-CACTCCC-CAGATACC-AC----TAAAGTAATGA--GAAATA--A-ATGCATAA-TG-GCTCCAACAAAAAA-CAAGCAC---ATAGCAAAACGTAGGCTCACGGGGCTCGATC--TTTTGTTGAACCTG---TAGTGAAGGCCAAT-A--AAGGAAGT-GA-C-GTCAATTTTGTGTGT-TGT--AT---ACG-TAGAG-A---CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGA--TTAAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATTA-TC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAAT-TGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTTG-TAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAG-CGTTCCTCTTTGCT--TTTGAAAATTCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTAAC--CTTCTGAAAACCGTAAATGAAGCGAATATGAAAATTATTTAAAAATATT-GCTA-TATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATCCA----GTGCCAATTTT-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TATAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAAT--T--T---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-AT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTGAGA-C-ACTTTTT---AGTCCTCA-A-TT-TT-AA-TGAAG---------TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATT--G----CGGC--T-ACCATGT-------ACG-GCGCA-TG-AC-GACTTG---AGCTT-TTG--A--TG--A-AGCTATTGGG--CA-CAT-GGA-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGACT-AG-GAA-AT-TCGGA--T---GTT-A---AT------T-T-GTT--CC-GTA--G-ACGACAGAG----C-TTGTTG--AAACC-AT-T-----AGCACGA-TTAGGCCTAATCGAC--A--TGAAACAGA------TAG-------GTCAC--AT--C-CACATACCAACA-CGTACAC-AATGAATGAAATA-CA-ATGCATAA-TACCGTCCAAACAAAAA-TAA-CAC-T-GTTCTAACACA-AGGCTCAC----TTCGAGG--TTTTGTTTA--CT-C--TA----------AC-A--A--GGAGT-GACC-GTC-ATTTTGTGTGT-TGTAAAT---ACG-TA-AG-A---CGATTGA-CGA-GGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGT--TTAAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-----A--GGCCTAATCA-TATGCA-GTGAATT-C---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCAA-A-T--TCTAAATGTGGA-CA-TTAA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTTA--A-T-GT-GA-C-A-TT-AA-----TC-C---CGT--G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-----------------------TT--A---C-GTG--A-C-A----TTAAC-GTCC-CA-A-TT-TTTAAATGAAGGG----T--TG--TG----CT----ATCAT--TAA--GTC---GGC--AT-TAAATATAG-G----CGGC-TT-ACC-TA--------ATG-G-G---TG-AC-G-ATTG---AGCCT-TTG--C--T---A-AGCTATT-GGGTCACCGA-GGAAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGACT-AG-GAA-AT-TCGGA--T-GTGT------AA------T-TGTTT--CCTGTAA-G-ACGACAG-G----T-TGGTTG--AAACC-A--T-----GAGACGA-TTAGGCCTAAT-GAA--ACATAAAACAGA------TAA-------GATACCAAT-TCTCACATACC-ACTACGTACACTAATGA---AAATAACA-ATGCATAA-T--CGTCCAAACAAAAA-CAA-CAC-TTGTTC---TACG-AAGCTC-------TCGA-G--TTTT-TTAA--TTAG--TAACA-------ACCA--A--GGAGT-GA-C-GTC-ATTT---G-GT-TGT-ATT---AC--TA-AGTA---CGATTGA-CGAAGGCGC-AGCGGC--TC-T---A-C-AATGATATAT--CAA-CAAA--AGG-C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCAATA-T--T---AAT-TG-AACA-TTAAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-A-----GTT-C----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTC----AC------------ATT--AA--C-GGT-GA-C-A----TTAAA-GTCCTCA-G-TT-TT-AAT------------------------------A-CA----------C---GGCGCAT-TAA-TATGG-G----CGG--TT-ACC-TA--------ATG-GC----TG-AGAG-CTTG---GGCCT-GTG-----TG--A-AGCTACTAGGGTCACCGC-GTA-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGACT-AG-GAATAT-TCGGGACT-G---T-G---AA------T-G-TTT--CC-GTA--G-ACGACAG-G----T-TGGTTG--AAACC-AATT-----AGCACGAATTATGCCTA--CGGAGAA--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC----TAAACTAATGAC-GAAATA-CAGATGCATAACTG--GTCCAAA-ACATT-CAA-CAC-----ACGAGAAC-TAGCCT-GC----TGCTACGATTTTTGTTCA--CTGTAGTAGGC-------AT-A--A--GGA-T-GA-C-GTC-AATTTGTGTGT-TGT-TAT---ACG-TA-AG-A---CAGT-GATCGA-G-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGA--TCAtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGG----ATCGTACT------ATT--AA--C-GTG--A-C-A----TTAAAGTTCCTCA-A-TT-T--AAT-GAAGGT----T--TG--GG--GGCT----AGCAT--TAA--GTC---GGC--AT-TAAATATTG-G----CCGCTT---CC-TA--------GTG-GC----TG-GC-G-CTTG---G-CCT-GTG--GATTG--A-AACTATTAGG-TCACCG--GGA-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGA--T-G-GTTGA---AA------T-G-TTT--TC-GTA--G-G-GACA-AG----T-TGGTTG--AAACC-A--T--------------TAGGTCTTATCGAC--A--TGAAGCAGA------TAGCCTATAGGTAAC-AAT-CC--ACATACC-AC--CA-AAAC-AACGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAAACAAACACAT-G----AAAACGTAGAACTGC----CTCGATT--TTTTGTTTA--C-GC--TAGTAGGAA---AT-A--A--GGAGT-GA-C-GTC-ATTTTGTG-GTCTGT--AT---ACGCTA-AG-A---CGATCGA-CGA-CGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGA--TT-GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAAT-TGAATTATC-TA-----AAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT-T--GGTTTG-TA-TTT-AATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GGT-CCT-TTTGCTCTTTTGAAAATTCGAA-GCGAAGCTCTGTTAATTTGTAA-TATATAAC-CCTTCTGAA--CGCTAAATGAAGCGAATATGAAAAT-ATT-AAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAAATAGGCCCA--AGCC-----ATTATGTAAGTGAATT-C---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATATT--T---AATG-G-A-CA-TT-AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTTA--A-T-GT-GA-CAA-TT-AA----GTT-C---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT-------------------ATT--AA--C-GTaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : CATTGCGGTGA--AAT-TCCA----GTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCAATA-TTCT---AATGTG-A-CA-TTAAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTTA--A-T-GT-AA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT----------------------ATT--AA--CGGTG-AA-CAA----TTAACAGTCCTC--A-TT-T
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11 1 222222 1 1 1 22 1 1 333333 1 11 2222 1 1 1111 1 111 1 1 1 11 1 1 1 1 11 1 1 1 1 1 22222 2222 11 1 1 1 1 1 1 1 111 1 1 33333333 2222222 1 111 1 222 8888888888888888888888888888888888888888888888 222222222222 11 444444444444444444444444444 111 11 1111 333333333333 3333 111 33333 2222222 111 111 11111 1 33333333333333333333333333 11 111111 11 3333333333 111111 222222 222222 22 33333 1 11 222 11 555555555 11 22222222 2222 11111111 4444444444444444 1111111 111 22222222 11111 11 11 1 11 3333333
lowQualScore : 1 88 0 1 444444 3 3 0 00 3 1 3 111111 6 7 3 88 5555 3 6 3 7 5555 7 3 0 666 3 3 7 3 88 5 5 5 5 88 22 5 5 5 5 5 77777 22 7 7 8888 7 2 33 0 5 0 3 3 7 3 6 3 7 777 0 3 3 0 3 3 3 33333333 6666666 3 3 0 777 0 5 0 4 4 4 4 4 8 55 8 55 222 2 3 3 3 3 7 555 44 3 44 3 44 3 3 3 3 3 3 3 7777 3 555 3 555 77 44 555 555 77 0000000000000000000000000000000000000000000000 55 55 4 000000000000 9 5 5 5 5 33 777777777777777777777777777 77 77 000 55 5 1 5 2222 444444444444 6 666 6 4444 6 6 6 111 6 22222 99 6 44 2 2 5 666 6 1111111 222 6 6 444 66666 3 6 6 6 6 99999999999999999999999999 99 6 55 6 99 666666 55 3333333333 6 66 444444 333333 333333 1 5 11 8 8 33333 0 0 99 8 8 8 666 33 8 8 333333333 5 33 33333333 2222 1 88888888 7777777777777777 99 2 6 6 6 7 6 8888888 6 6 6 111 3 6 99999999 1 1 88888 6 6 11 8 8 8 11 0 0 2 55 4444444
lowQualScore : . .. . . ...... . . . .. . . . ...... . . . .. .... . . . . .... . . . ... . . . . .. . . . . .. .. . . . . . ..... .. . . .... . . .. . . . . . . . . . . ... . . . . . . . ........ ....... . . . ... . . . . . . . . . .. . .. ... . . . . . . ... .. . .. . .. . . . . . . . .... . ... . ... .. .. ... ... .. .............................................. .. .. . ............ . . . . . .. ........................... .. .. ... .. . . . .... ............ . ... . .... . . . ... . ..... .. . .. . . . ... . ....... ... . . ... ..... . . . . . .......................... .. . .. . .. ...... .. .......... . .. ...... ...... ...... . . .. . . ..... . . .. . . . ... .. . . ......... . .. ........ .... . ........ ................ .. . . . . . . ....... . . . ... . . ........ . . ..... . . .. . . . .. . . . .. .......
lowQualScore : 0 33 3 0 777777 3 3 7 00 3 0 3 000000 7 3 3 33 0000 3 7 3 3 3333 3 3 7 777 3 3 3 3 00 5 5 5 0 55 00 5 5 5 5 0 00000 00 3 3 3333 3 5 88 0 5 0 3 3 3 3 7 3 3 000 0 2 2 0 2 2 2 00000000 0000000 2 2 0 555 0 7 1 4 4 4 4 0 0 55 0 55 000 5 6 6 6 6 3 222 66 3 66 3 66 3 3 3 3 3 3 3 1111 3 888 3 888 88 66 000 888 11 1111111111111111111111111111111111111111111111 55 55 0 000000000000 0 0 0 0 7 77 111111111111111111111111111 99 99 000 77 7 4 7 1111 333333333333 7 888 7 3333 7 7 7 777 7 22222 22 7 22 5 5 2 888 7 7777777 888 7 7 333 77777 8 7 7 7 7 77777777777777777777777777 22 7 88 7 88 888888 88 3333333333 7 88 000000 000000 000000 0 0 22 0 0 00000 6 6 00 0 0 0 222 00 0 0 222222222 6 88 00000000 4444 0 77777777 5555555555555555 22 5 7 7 7 3 7 8888888 7 7 7 777 7 7 00000000 0 0 00000 7 7 00 0 0 0 00 8 0 5 88 5555555
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGAC-TAG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAAC-AAAAAC-AA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGC--TAG-------C----AAT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGAC-TAG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAAC-AAAAAC-AA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGC--TAG-------C----GAT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
gi|1 : G-A-CA-TTA---CC-TACATTTGCTCT-CA--ATAA--TA-TCTA--A-TTGT-GA-C-AATC-CATCCCGTT-C---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTT----A-------------AT---GA--C-GTA-GA-C-GAT--TTCAAAGTCCTCATA-TTCTT-AATTGAGGGTATGAT--TGTAGGT-GGCCTGTGG-CAT--TAA--GTCTTTGGC--ATATAACTATTG-AGGACCGGCCTTTACATGTCCATC-T-A-ATGAGCAGAATGGAC-G-CTTGCAAGGTCTG-TGCAA--TGCCA-AG---TTACATTCAC-GCGG-G-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGAC-TAG-AGA-AA-TCGAA--TGG-GTT-ATGGAATTATGCT-T-CTT--CT-GTGTCGTACGACACAGCTCTC-TGGTTGGTAATCCTA--TACCTAAGCACGA-TTAG
gi|1 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaTGC--TAG-------C----AGT-A--------GA-CCGTC-TCTTTGTGTGT-TGT-AACGTAATG-TC-AA-ACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-Aaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcagacattacctacatttgctctcaataatatctaattgtgacaatccatcccgttccgttgtgatcgaaacgaacttttaagctaggatcttgttcatgttaatgacgtagacgatttcaaagtcctcatattcttaattgagggtatgattgtaggtggcctgtggcattaagtctttggcatataactattgaggaccggcctttacatgtccatctaatgagcagaatggacgcttgcaaggtctgtgcaatgccaagttacattcacgcgggatgaagtagatttttcgctcaaaaaatcaaggatagactcgactagagaaatcgaatgggttatggaattatgcttcttctgtgtcgtacgacacagctctctggttggtaatcctatacctaagcacgattagaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagaATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGA-CAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAA-AG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : -ATCAGG-ACC--G-G-TTG-T-A--TCAATATT--T---AATTTG-A-CA-TTAAAG-C-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TTAAA----GTT-C---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATG----AAGGAATCCTTTCGATT--AAACC-GT-----C-A----TTAAAA-TCCTGG-A--T-TT-AA-TGCACGT----TTCTT--TG--GGCA----T-CAT--TAAACGTT-----C--AT-T-AATA-TG-G----C
gi|15 : aagtgtccactgtcattgttctaccGG-ATC-CGCG-TTG-TTA--TCAGAA-T--T---AAT-TG-A-CA-TTGAAGTC-T-CATTAAAT---CA--A-AA--TA-TTTATTA-C-AT--A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA---T-A-A---------TGTAAG------GAC-ATGTCACA-------------A----AA--C-GTA-GATC-A----TTAAA-GTCC
gi|19 : TG-T-A--TCA-TA-C--TTCAGATGTA-A--A-TTAATGTC---CATTAGAT-T-CATAA-AG--TA-TTTA--A-T-GT-GA-C-C-AT-AG----ATT-C---TG-T-G---T--TC--AA--GTA---TTT-A---------Tgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--AAT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAG----C-------------ATTTAAG--C-GTG--A-C-G----TTAAAAGTCCTCA-ACTT-TT-AATTGAAGGT----TCTTG--GGCGGGCT----A-CATATTAA--GTC---GGCCAAT-TAAAT-TTGCG----CGGCCTT---------ACC-TTA-ATG-GCT---GG-AC-G-CTTG---GGTCTGGTG-----TG--AGAGCTACTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGAC-TAGCGAA-AT-TC-GA--T-G-TGC-A---AA------TGT-TCTTGCT-GTA--G-ACGACAGAG----TCTGGTTGA-AAACC-A--T-----AGCACGA-TTAGGGCT-ATCGAG--A--TAAAACAGATAGGCCTAG------GTCA-CACTCCC-CAGATACC-AC----TAAAGTAATGA--GAAATA--A-ATGCATAA-TG-GCTCCAACA-AAAAAC-AAGCAC---ATAGC-AAAACGTAGGCTCACGGGGCTCGATC--TTTTGTTGAACCTG---TAGTGAAGGCC----AAT-AAAGGAAGTGA-C-GTCAATTTTGTGTGT-TGT--AT---ACG-TAGAG-A---CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGA--TTAAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATTA-TC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAAT-TGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTT-GTAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAG-CGTTCCTCTTTGCT--TTTGAAAATTCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTAACC-TTCTGAAAACCGTAAATGAAGCGAATATGAAAATTATTTAAAAATATT-GCTA-TATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATCCA----GTGCCAATTTT-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TATAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAAT--T--T---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-AT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTGAGA-C-ACTTTTT---AGTCCTCA-A-TT-TT-AA-TGAAG---------TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATT--G----CGGC--T---------ACCAT-GTACG-GCGCA-TG-AC-GACTTG---AGCTTT-TG--A--TG--A-AGCTATTGGG--CA-CATGG-A-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGAC-TAG-GAA-AT-TCGGA--T---GTT-A---AT------T-T-GTT--CC-GTA--G-ACGACAGAG----C-TTGTTG--AAACC-AT-T-----AGCACGA-TTAGGCCTAATCGAC--A--TGAAACAGA------TAG------GTCAC--AT--C-CACATACCAACA-CGTACAC-AATGAATGAAATA-CA-ATGCATAA-TACCGTCCAAAC-AAAAAT-AA-CAC-T-GT-TCTAACACA-AGGCTCAC----TTCGAGG--TTTTGTTTA--CT-C--TAA-------C--------AA--GGAGTGACC-GTC-ATTTTGTGTGT-TGTAAAT---ACG-TA-AG-A---CGATTGA-CGA-GGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGT--TTAAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-----A--GGCCTAATCA-TATGCA-GTGAATT-C---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCAA-A-T--TCTAAATGTGGA-CA-TTAA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTTA--A-T-GT-GA-C-A-TT-AA-----TC-C---CGT--G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-----------------------TT--A---C-GTG--A-C-A----TTAAC-GTCC-CA-A-TT-TTTAAATGAAGGG----T--TG--TG----CT----ATCAT--TAA--GTC---GGC--AT-TAAATATAG-G----CGGC-TT---------ACC-T-A-ATG-G-G---TG-AC-G-ATTG---AGCCTT-TG--C--T---A-AGCTATT-GGGTCACCGAGG-AAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGAC-TAG-GAA-AT-TCGGA--T-GTGT------AA------T-TGTTT--CCTGTAA-G-ACGACAG-G----T-TGGTTG--AAACC-A--T-----GAGACGA-TTAGGCCTAAT-GAA--ACATAAAACAGA------TAA------GATACCAAT-TCTCACATACC-ACTACGTACACTAATGA---AAATAACA-ATGCATAA-T--CGTCCAAAC-AAAAAC-AA-CAC-TTGT-TC-TA--CG-AAGCTC-------TCGA-G--TTTT-TTAA--TTAG--TAA-------C----AACCAA--GGAGTGA-C-GTC-ATTT---G-GT-TGT-ATT---AC--TA-AGTA---CGATTGA-CGAAGGCGC-AGCGGC--TC-T---A-C-AATGATATAT--CAA-CAAA--AGG-C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCAATA-T--T---AAT-TG-AACA-TTAAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-A-----GTT-C----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTC----AC------------ATT--AA--C-GGT-GA-C-A----TTAAA-GTCCTCA-G-TT-TT-AAT------------------------------A-CA----------C---GGCGCAT-TAA-TATGG-G----CGG--TT---------ACC-T-A-ATG-GC----TG-AGAG-CTTG---GGCCTG-TG-----TG--A-AGCTACTAGGGTCACCGCGT-A-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGAC-TAG-GAATAT-TCGGGACT-G---T-G---AA------T-G-TTT--CC-GTA--G-ACGACAG-G----T-TGGTTG--AAACC-AATT-----AGCACGAATTATGCCTA--CGGAGAA--TGAAACAGA------TAG------GTCACCAAT-CC-CACATACC-AC----TAAACTAATGAC-GAAATA-CAGATGCATAACTG--GTCCAAA--ACATTC-AA-CAC------ACGAGAAC-TAGCCT-GC----TGCTACGATTTTTGTTCA--CTGTAGTAG-------G----CAT-AA--GGA-TGA-C-GTC-AATTTGTGTGT-TGT-TAT---ACG-TA-AG-A---CAGT-GATCGA-G-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGA--TCAtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGG----ATCGTACT------ATT--AA--C-GTG--A-C-A----TTAAAGTTCCTCA-A-TT-T--AAT-GAAGGT----T--TG--GG--GGCT----AGCAT--TAA--GTC---GGC--AT-TAAATATTG-G----CCGCTT-----------CC-T-A-GTG-GC----TG-GC-G-CTT----GGCCTG-TG--GATTG--A-AACTATTA-GGTCACCG-GG-A-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGA--T-G-GTTGA---AA------T-G-TTT--TC-GTA--G-G-GACA-AG----T-TGGTTG--AAACC----------------A-TTAGGTCTTATCGAC--A--TGAAGCAGA------TAGCCTATAGGTAACAAT--C-CACATACC-AC--CA-AAAC-AACGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAAACAAA-CACAT-G-----AAAACGTAGAACTGC----CTCGATT--TTTTGTTTA--C-GC--TAG-------TAGGAAAT-AA--GGAGTGA-C-GTC-ATTTTGTG-GTCTGT--AT---ACGCTA-AG-A---CGATCGA-CGA-CGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGA--TT-GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAAT-TGAATTATC-TA-----AAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT-T--GGTTT-GTA-TTT-AATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GGT-CCT-TTTGCTCTTTTGAAAATTCGAA-GCGAAGCTCTGTTAATTTGTAAT-ATATAACCCTTCTGAA--CGCTAAATGAAGCGAATATGAAAAT-ATT-AAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAAATAGGCCCA--AGCC-----ATTATGTAAGTGAATT-C---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATATT--T---AATG-G-A-CA-TT-AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTTA--A-T-GT-GA-CAA-TT-AA----GTT-C---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT-------------------ATT--AA--C-GTaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : CATTGCGGTGA--AAT-TCCA----GTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCAATA-TTCT---AATGTG-A-CA-TTAAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTTA--A-T-GT-AA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT----------------------ATT--AA--CGGTG-AA-CAA----TTAACAGTCCTC--A-TT-T
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11 1 222222 1 1 1 22 1 1 333333 1 11 2222 1 1 1111 1 111 1 1 1 11 1 1 1 1 11 1 1 1 1 1 22222 2222 11 1 1 1 1 1 1 1 111 1 1 33333333 2222222 1 111 1 222 8888888888888888888888888888888888888888888888 222222222222 11 444444444444444444444444444 111 11 1111 333333333333 3333 111 33333 1 2222222 111 111 11111 1 33333333333333333333333333 11 111111 11 222222222 111111 222222 2222222 1 11 33333 1 11 222 1 555555555 11 22222222 2222 111111 4444444444444444 1111111 111 22222222 11111 11 11 1 11 3333333
lowQualScore : 1 88 0 1 444444 3 3 0 00 3 1 3 111111 6 7 3 88 5555 3 6 3 7 5555 7 3 0 666 3 3 7 3 88 5 5 5 5 88 22 5 5 5 5 5 77777 22 7 7 8888 7 2 33 0 5 0 3 3 7 3 6 3 7 777 0 3 3 0 3 3 3 33333333 6666666 3 3 0 777 0 5 0 4 4 4 4 4 8 55 8 55 222 2 3 3 3 3 7 555 44 3 44 3 44 3 3 3 3 3 3 3 7777 3 555 3 555 77 44 555 555 77 0000000000000000000000000000000000000000000000 55 55 4 000000000000 9 5 5 5 5 33 777777777777777777777777777 77 77 000 55 5 1 5 2222 444444444444 6 666 6 4444 6 6 6 111 6 22222 99 6 1 0 2 5 666 6 1111111 222 6 6 444 66666 3 6 6 6 6 99999999999999999999999999 99 6 55 6 99 666666 55 6 555555555 6 66 444444 333333 6666666 0 11 8 8 33333 0 0 99 8 8 8 666 5 8 6 333333333 5 33 33333333 2222 1 555555 3333333333333333 99 2 6 6 6 7 6 8888888 6 6 6 111 3 6 99999999 1 1 88888 6 6 11 8 8 8 11 0 0 2 55 4444444
lowQualScore : . .. . . ...... . . . .. . . . ...... . . . .. .... . . . . .... . . . ... . . . . .. . . . . .. .. . . . . . ..... .. . . .... . . .. . . . . . . . . . . ... . . . . . . . ........ ....... . . . ... . . . . . . . . . .. . .. ... . . . . . . ... .. . .. . .. . . . . . . . .... . ... . ... .. .. ... ... .. .............................................. .. .. . ............ . . . . . .. ........................... .. .. ... .. . . . .... ............ . ... . .... . . . ... . ..... .. . . . . . ... . ....... ... . . ... ..... . . . . . .......................... .. . .. . .. ...... .. . ......... . .. ...... ...... ....... . .. . . ..... . . .. . . . ... . . . ......... . .. ........ .... . ...... ................ .. . . . . . . ....... . . . ... . . ........ . . ..... . . .. . . . .. . . . .. .......
lowQualScore : 0 33 3 0 777777 3 3 7 00 3 0 3 000000 7 3 3 33 0000 3 7 3 3 3333 3 3 7 777 3 3 3 3 00 5 5 5 0 55 00 5 5 5 5 0 00000 00 3 3 3333 3 5 88 0 5 0 3 3 3 3 7 3 3 000 0 2 2 0 2 2 2 00000000 0000000 2 2 0 555 0 7 1 4 4 4 4 0 0 55 0 55 000 5 6 6 6 6 3 222 66 3 66 3 66 3 3 3 3 3 3 3 1111 3 888 3 888 88 66 000 888 11 1111111111111111111111111111111111111111111111 55 55 0 000000000000 0 0 0 0 7 77 111111111111111111111111111 99 99 000 77 7 4 7 1111 333333333333 7 888 7 3333 7 7 7 777 7 22222 22 7 7 8 5 2 888 7 7777777 888 7 7 333 77777 8 7 7 7 7 77777777777777777777777777 22 7 88 7 88 888888 88 7 222222222 7 88 000000 000000 0000000 0 22 0 0 00000 6 6 00 0 0 0 222 0 0 0 222222222 6 88 00000000 4444 0 222222 7777777777777777 22 5 7 7 7 3 7 8888888 7 7 7 777 7 7 00000000 0 0 00000 7 7 00 0 0 0 00 8 0 5 88 5555555
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGCTAG-------CA----AT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGCTAG-------CA----AT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
gi|1 : G-A-CA-TTA---CC-TACATTTGCTCT-CA--ATAA--TA-TCTA--A-TTGT-GA-C-AATC-CATCCCGTT-C---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTT----A-------------AT---GA--C-GTA-GA-C-GAT--TTCAAAGTCCTCATA-TTCTT-AATTGAGGGTATGAT--TGTAGGT-GGCCTGTGG-CAT--TAA--GTCTTTGGC--ATATAACTATTG-AGGACCGGCCTTTACATGTCCATC-T-A-ATGAGCAGAATGGAC-G-CTTGCAAGGTCTG-TGCAA--TGCCA-AG---TTACATTCAC-GCGG-G-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGACT-AG-AGA-AA-TCGAA--TGG-GTT-ATGGAATTATGCT-T-CTT--CT-GTGTCGTACGACACAGCTCTC-TGGTTGGTAATCCTA--TACCTAAGCACGA-TTAG
gi|1 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaTGCTAG-------CA----GT-A--------GA-CCGTC-TCTTTGTGTGT-TGT-AACGTAATG-TC-AA-ACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-Aaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcagacattacctacatttgctctcaataatatctaattgtgacaatccatcccgttccgttgtgatcgaaacgaacttttaagctaggatcttgttcatgttaatgacgtagacgatttcaaagtcctcatattcttaattgagggtatgattgtaggtggcctgtggcattaagtctttggcatataactattgaggaccggcctttacatgtccatctaatgagcagaatggacgcttgcaaggtctgtgcaatgccaagttacattcacgcgggatgaagtagatttttcgctcaaaaaatcaaggatagactcgactagagaaatcgaatgggttatggaattatgcttcttctgtgtcgtacgacacagctctctggttggtaatcctatacctaagcacgattagaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagaATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGA-CAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAA-AG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : -ATCAGG-ACC--G-G-TTG-T-A--TCAATATT--T---AATTTG-A-CA-TTAAAG-C-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TTAAA----GTT-C---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATG----AAGGAATCCTTTCGATT--AAACC-GT-----C-A----TTAAAA-TCCTGG-A--T-TT-AA-TGCACGT----TTCTT--TG--GGCA----T-CAT--TAAACGTT-----C--AT-T-AATA-TG-G----C
gi|15 : aagtgtccactgtcattgttctaccGG-ATC-CGCG-TTG-TTA--TCAGAA-T--T---AAT-TG-A-CA-TTGAAGTC-T-CATTAAAT---CA--A-AA--TA-TTTATTA-C-AT--A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA---T-A-A---------TGTAAG------GAC-ATGTCACA-------------A----AA--C-GTA-GATC-A----TTAAA-GTCC
gi|19 : TG-T-A--TCA-TA-C--TTCAGATGTA-A--A-TTAATGTC---CATTAGAT-T-CATAA-AG--TA-TTTA--A-T-GT-GA-C-C-AT-AG----ATT-C---TG-T-G---T--TC--AA--GTA---TTT-A---------Tgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--AAT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAG----C-------------ATTTAAG--C-GTG--A-C-G----TTAAAAGTCCTCA-ACTT-TT-AATTGAAGGT----TCTTG--GGCGGGCT----A-CATATTAA--GTC---GGCCAAT-TAAAT-TTGCG----CGGCCTT---------ACC-TTA-ATG-GCT---GG-AC-G-CTTG---GGTCTGGTG-----TG--AGAGCTACTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGACT-AGCGAA-AT-TC-GA--T-G-TGC-A---AA------TGT-TCTTGCT-GTA--G-ACGACAGAG----TCTGGTTGA-AAACC-A--T-----AGCACGA-TTAGGGCT-ATCGAG--A--TAAAACAGATAGGCCTAG-------GTCA-CACTCCC-CAGATACC-AC----TAAAGTAATGA--GAAATA--A-ATGCATAA-TG-GCTCCAACAAAAAA-CAAGCAC---ATAGC-AAAACGTAGGCTCACGGGGCTCGATC--TTTTGTTGAACCTG-TAGTGAAGGCCA----AT-AAAGGAAGTGA-C-GTCAATTTTGTGTGT-TGT--AT---ACG-TAGAG-A---CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGA--TTAAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATTA-TC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAAT-TGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTT-GTAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAG-CGTTCCTCTTTGCT--TTTGAAAATTCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTAACC-TTCTGAAAACCGTAAATGAAGCGAATATGAAAATTATTTAAAAATATT-GCTA-TATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATCCA----GTGCCAATTTT-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TATAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAAT--T--T---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-AT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTGAGA-C-ACTTTTT---AGTCCTCA-A-TT-TT-AA-TGAAG---------TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATT--G----CGGC--T---------ACCAT-GTACG-GCGCA-TG-AC-GACTTG---AGCTTT-TG--A--TG--A-AGCTATTGGG--CA-CATGG-A-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGACT-AG-GAA-AT-TCGGA--T---GTT-A---AT------T-T-GTT--CC-GTA--G-ACGACAGAG----C-TTGTTG--AAACC-AT-T-----AGCACGA-TTAGGCCTAATCGAC--A--TGAAACAGA------TAG-------GTCAC--AT--C-CACATACCAACA-CGTACAC-AATGAATGAAATA-CA-ATGCATAA-TACCGTCCAAACAAAAA-TAA-CAC-T-GT-TCTAACACA-AGGCTCAC----TTCGAGG--TTTTGTTTA--CT-CTAA-------C--------AA--GGAGTGACC-GTC-ATTTTGTGTGT-TGTAAAT---ACG-TA-AG-A---CGATTGA-CGA-GGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGT--TTAAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-----A--GGCCTAATCA-TATGCA-GTGAATT-C---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCAA-A-T--TCTAAATGTGGA-CA-TTAA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTTA--A-T-GT-GA-C-A-TT-AA-----TC-C---CGT--G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-----------------------TT--A---C-GTG--A-C-A----TTAAC-GTCC-CA-A-TT-TTTAAATGAAGGG----T--TG--TG----CT----ATCAT--TAA--GTC---GGC--AT-TAAATATAG-G----CGGC-TT---------ACC-T-A-ATG-G-G---TG-AC-G-ATTG---AGCCTT-TG--C--T---A-AGCTATT-GGGTCACCGAGG-AAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGACT-AG-GAA-AT-TCGGA--T-GTGT------AA------T-TGTTT--CCTGTAA-G-ACGACAG-G----T-TGGTTG--AAACC-A--T-----GAGACGA-TTAGGCCTAAT-GAA--ACATAAAACAGA------TAA-------GATACCAAT-TCTCACATACC-ACTACGTACACTAATGA---AAATAACA-ATGCATAA-T--CGTCCAAACAAAAA-CAA-CAC-TTGT-TC-TA--CG-AAGCTC-------TCGA-G--TTTT-TTAA--TTAGTAA-------CA----ACCAA--GGAGTGA-C-GTC-ATTT---G-GT-TGT-ATT---AC--TA-AGTA---CGATTGA-CGAAGGCGC-AGCGGC--TC-T---A-C-AATGATATAT--CAA-CAAA--AGG-C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCAATA-T--T---AAT-TG-AACA-TTAAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-A-----GTT-C----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTC----AC------------ATT--AA--C-GGT-GA-C-A----TTAAA-GTCCTCA-G-TT-TT-AAT------------------------------A-CA----------C---GGCGCAT-TAA-TATGG-G----CGG--TT---------ACC-T-A-ATG-GC----TG-AGAG-CTTG---GGCCTG-TG-----TG--A-AGCTACTAGGGTCACCGCGT-A-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGACT-AG-GAATAT-TCGGGACT-G---T-G---AA------T-G-TTT--CC-GTA--G-ACGACAG-G----T-TGGTTG--AAACC-AATT-----AGCACGAATTATGCCTA--CGGAGAA--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC----TAAACTAATGAC-GAAATA-CAGATGCATAACTG--GTCCAAA-ACATT-CAA-CAC------ACGAGAAC-TAGCCT-GC----TGCTACGATTTTTGTTCA--CTG-TAG-------TAGGC-AT-AA--GGA-TGA-C-GTC-AATTTGTGTGT-TGT-TAT---ACG-TA-AG-A---CAGT-GATCGA-G-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGA--TCAtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGG----ATCGTACT------ATT--AA--C-GTG--A-C-A----TTAAAGTTCCTCA-A-TT-T--AAT-GAAGGT----T--TG--GG--GGCT----AGCAT--TAA--GTC---GGC--AT-TAAATATTG-G----CCGCTT-----------CC-T-A-GTG-GC----TG-GC-G-CTTG---G-CCTG-TG--GATTG--A-AACTATTAGG-TCACCG-GG-A-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGA--T-G-GTTGA---AA------T-G-TTT--TC-GTA--G-G-GACA-AG----T-TGGTTG--AAACC-A--T--------------TAGGTCTTATCGAC--A--TGAAGCAGA------TAGCCTATAGGTAAC-AAT-CC--ACATACC-AC--CA-AAAC-AACGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAAACAAACACAT-G-----AAAACGTAGAACTGC----CTCGATT--TTTTGTTTA--C-GCTAG-------TAGGAAAT-AA--GGAGTGA-C-GTC-ATTTTGTG-GTCTGT--AT---ACGCTA-AG-A---CGATCGA-CGA-CGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGA--TT-GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAAT-TGAATTATC-TA-----AAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT-T--GGTTT-GTA-TTT-AATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GGT-CCT-TTTGCTCTTTTGAAAATTCGAA-GCGAAGCTCTGTTAATTTGTAAT-ATATAACCCTTCTGAA--CGCTAAATGAAGCGAATATGAAAAT-ATT-AAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAAATAGGCCCA--AGCC-----ATTATGTAAGTGAATT-C---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATATT--T---AATG-G-A-CA-TT-AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTTA--A-T-GT-GA-CAA-TT-AA----GTT-C---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT-------------------ATT--AA--C-GTaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : CATTGCGGTGA--AAT-TCCA----GTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCAATA-TTCT---AATGTG-A-CA-TTAAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTTA--A-T-GT-AA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT----------------------ATT--AA--CGGTG-AA-CAA----TTAACAGTCCTC--A-TT-T
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11 1 222222 1 1 1 22 1 1 333333 1 11 2222 1 1 1111 1 111 1 1 1 11 1 1 1 1 11 1 1 1 1 1 22222 2222 11 1 1 1 1 1 1 1 111 1 1 33333333 2222222 1 111 1 222 8888888888888888888888888888888888888888888888 222222222222 11 444444444444444444444444444 111 11 1111 333333333333 3333 111 33333 1 2222222 111 111 11111 1 33333333333333333333333333 11 111111 11 222222222 111111 222222 2222222 1 11 33333 1 11 222 1 555555555 11 22222222 2222 111111 4444444444444444 1111111 111 22222222 11111 11 11 1 11 3333333
lowQualScore : 1 88 0 1 444444 3 3 0 00 3 1 3 111111 6 7 3 88 5555 3 6 3 7 5555 7 3 0 666 3 3 7 3 88 5 5 5 5 88 22 5 5 5 5 5 77777 22 7 7 8888 7 2 33 0 5 0 3 3 7 3 6 3 7 777 0 3 3 0 3 3 3 33333333 6666666 3 3 0 777 0 5 0 4 4 4 4 4 8 55 8 55 222 2 3 3 3 3 7 555 44 3 44 3 44 3 3 3 3 3 3 3 7777 3 555 3 555 77 44 555 555 77 0000000000000000000000000000000000000000000000 55 55 4 000000000000 9 5 5 5 5 33 777777777777777777777777777 77 77 000 55 5 1 5 2222 444444444444 6 666 6 4444 6 6 6 111 6 22222 99 6 1 0 2 5 666 6 1111111 222 6 6 444 66666 3 6 6 6 6 99999999999999999999999999 99 6 55 6 99 666666 55 6 555555555 6 66 444444 333333 6666666 0 11 8 8 33333 0 0 99 8 8 8 666 5 8 6 333333333 5 33 33333333 2222 1 555555 3333333333333333 99 2 6 6 6 7 6 8888888 6 6 6 111 3 6 99999999 1 1 88888 6 6 11 8 8 8 11 0 0 2 55 4444444
lowQualScore : . .. . . ...... . . . .. . . . ...... . . . .. .... . . . . .... . . . ... . . . . .. . . . . .. .. . . . . . ..... .. . . .... . . .. . . . . . . . . . . ... . . . . . . . ........ ....... . . . ... . . . . . . . . . .. . .. ... . . . . . . ... .. . .. . .. . . . . . . . .... . ... . ... .. .. ... ... .. .............................................. .. .. . ............ . . . . . .. ........................... .. .. ... .. . . . .... ............ . ... . .... . . . ... . ..... .. . . . . . ... . ....... ... . . ... ..... . . . . . .......................... .. . .. . .. ...... .. . ......... . .. ...... ...... ....... . .. . . ..... . . .. . . . ... . . . ......... . .. ........ .... . ...... ................ .. . . . . . . ....... . . . ... . . ........ . . ..... . . .. . . . .. . . . .. .......
lowQualScore : 0 33 3 0 777777 3 3 7 00 3 0 3 000000 7 3 3 33 0000 3 7 3 3 3333 3 3 7 777 3 3 3 3 00 5 5 5 0 55 00 5 5 5 5 0 00000 00 3 3 3333 3 5 88 0 5 0 3 3 3 3 7 3 3 000 0 2 2 0 2 2 2 00000000 0000000 2 2 0 555 0 7 1 4 4 4 4 0 0 55 0 55 000 5 6 6 6 6 3 222 66 3 66 3 66 3 3 3 3 3 3 3 1111 3 888 3 888 88 66 000 888 11 1111111111111111111111111111111111111111111111 55 55 0 000000000000 0 0 0 0 7 77 111111111111111111111111111 99 99 000 77 7 4 7 1111 333333333333 7 888 7 3333 7 7 7 777 7 22222 22 7 7 8 5 2 888 7 7777777 888 7 7 333 77777 8 7 7 7 7 77777777777777777777777777 22 7 88 7 88 888888 88 7 222222222 7 88 000000 000000 0000000 0 22 0 0 00000 6 6 00 0 0 0 222 0 0 0 222222222 6 88 00000000 4444 0 222222 7777777777777777 22 5 7 7 7 3 7 8888888 7 7 7 777 7 7 00000000 0 0 00000 7 7 00 0 0 0 00 8 0 5 88 5555555
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGCTAG-------CA----AT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGCTAG-------CA----AT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
gi|1 : G-A-CA-TTA---CC-TACATTTGCTCT-CA--ATAA--TA-TCTA--A-TTGT-GA-C-AATC-CATCCCGTT-C---CGTT-G---TGATCGAAA--CGAACTTTT-AAGCTAGGATCTTGTT------CAT-GTT----A-------------AT---GA--C-GTA-GA-C-GAT--TTCAAAGTCCTCATA-TTCTT-AATTGAGGGTATGAT--TGTAGGT-GGCCTGTGG-CAT--TAA--GTCTTTGGC--ATATAACTATTG-AGGACCGGCCTTTACATGTCCATC-T-A-ATGAGCAGAATGGAC-G-CTTGCAAGGTCTG-TGCAA--TGCCA-AG---TTACATTCAC-GCGG-G-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGACT-AG-AGA-AA-TCGAA--TGG-GTT-ATGGAATTATGCT-T-CTT--CT-GTGTCGTACGACACAGCTCTC-TGGTTGGTAATCCTA--TACCTAAGCACGA-TTAG
gi|1 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaTGCTAG-------CA----GT-A--------GA-CCGTC-TCTTTGTGTGT-TGT-AACGTAATG-TC-AA-ACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-Aaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagatgctagcagtagaccgtctctttgtgtgttgtaacgtaatgtcaaaccccaatcgacgcagaggcgatctccaaactaataatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcagacattacctacatttgctctcaataatatctaattgtgacaatccatcccgttccgttgtgatcgaaacgaacttttaagctaggatcttgttcatgttaatgacgtagacgatttcaaagtcctcatattcttaattgagggtatgattgtaggtggcctgtggcattaagtctttggcatataactattgaggaccggcctttacatgtccatctaatgagcagaatggacgcttgcaaggtctgtgcaatgccaagttacattcacgcgggatgaagtagatttttcgctcaaaaaatcaaggatagactcgactagagaaatcgaatgggttatggaattatgcttcttctgtgtcgtacgacacagctctctggttggtaatcctatacctaagcacgattagaggacccctatcgagtaaccttatggcgatttagatctagatcattgtccaatcaccctaatggatctttatgacactacttggctataatatgtccaatattcccaccaaacacaaacacattcgaaacgagactagcgcattgctgctcatggattatttgttcttgaaacattgagtagtgagccatagtaagaATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGA-CAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAA-AG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : -ATCAGG-ACC--G-G-TTG-T-A--TCAATATT--T---AATTTG-A-CA-TTAAAG-C-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TTAAA----GTT-C---CGTT-GTTTT-ATC--AA----A---T---A---------TTTA------------ATG----AAGGAATCCTTTCGATT--AAACC-GT-----C-A----TTAAAA-TCCTGG-A--T-TT-AA-TGCACGT----TTCTT--TG--GGCA----T-CAT--TAAACGTT-----C--AT-T-AATA-TG-G----C
gi|15 : aagtgtccactgtcattgttctaccGG-ATC-CGCG-TTG-TTA--TCAGAA-T--T---AAT-TG-A-CA-TTGAAGTC-T-CATTAAAT---CA--A-AA--TA-TTTATTA-C-AT--A-C-A-TT-AA----G---A---CGTT-G---T--CC--AA--CGA---T-A-A---------TGTAAG------GAC-ATGTCACA-------------A----AA--C-GTA-GATC-A----TTAAA-GTCC
gi|19 : TG-T-A--TCA-TA-C--TTCAGATGTA-A--A-TTAATGTC---CATTAGAT-T-CATAA-AG--TA-TTTA--A-T-GT-GA-C-C-AT-AG----ATT-C---TG-T-G---T--TC--AA--GTA---TTT-A---------Tgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--AAT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTA-A---------AATGTAAAGGATCGT-CAG----C-------------ATTTAAG--C-GTG--A-C-G----TTAAAAGTCCTCA-ACTT-TT-AATTGAAGGT----TCTTG--GGCGGGCT----A-CATATTAA--GTC---GGCCAAT-TAAAT-TTGCG----CGGCCTT---------ACC-TTA-ATG-GCT---GG-AC-G-CTTG---GGTCTGGTG-----TG--AGAGCTACTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGACT-AGCGAA-AT-TC-GA--T-G-TGC-A---AA------TGT-TCTTGCT-GTA--G-ACGACAGAG----TCTGGTTGA-AAACC-A--T-----AGCACGA-TTAGGGCT-ATCGAG--A--TAAAACAGATAGGCCTAG-------GTCA-CACTCCC-CAGATACC-AC----TAAAGTAATGA--GAAATA--A-ATGCATAA-TG-GCTCCAACAAAAAA-CAAGCAC---ATAGC-AAAACGTAGGCTCACGGGGCTCGATC--TTTTGTTGAACCTG-TAGTGAAGGCCA----AT-AAAGGAAGTGA-C-GTCAATTTTGTGTGT-TGT--AT---ACG-TAGAG-A---CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGA--TTAAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATTA-TC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAAT-TGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTT-GTAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAG-CGTTCCTCTTTGCT--TTTGAAAATTCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTAACC-TTCTGAAAACCGTAAATGAAGCGAATATGAAAATTATTTAAAAATATT-GCTA-TATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATCCA----GTGCCAATTTT-CATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TATAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAAT--T--T---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-AT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTGAGA-C-ACTTTTT---AGTCCTCA-A-TT-TT-AA-TGAAG---------TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATT--G----CGGC--T---------ACCAT-GTACG-GCGCA-TG-AC-GACTTG---AGCTTT-TG--A--TG--A-AGCTATTGGG--CA-CATGG-A-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGACT-AG-GAA-AT-TCGGA--T---GTT-A---AT------T-T-GTT--CC-GTA--G-ACGACAGAG----C-TTGTTG--AAACC-AT-T-----AGCACGA-TTAGGCCTAATCGAC--A--TGAAACAGA------TAG-------GTCAC--AT--C-CACATACCAACA-CGTACAC-AATGAATGAAATA-CA-ATGCATAA-TACCGTCCAAACAAAAA-TAA-CAC-T-GT-TCTAACACA-AGGCTCAC----TTCGAGG--TTTTGTTTA--CT-CTAA-------C--------AA--GGAGTGACC-GTC-ATTTTGTGTGT-TGTAAAT---ACG-TA-AG-A---CGATTGA-CGA-GGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGT--TTAAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAAATA-----A--GGCCTAATCA-TATGCA-GTGAATT-C---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCAA-A-T--TCTAAATGTGGA-CA-TTAA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTTA--A-T-GT-GA-C-A-TT-AA-----TC-C---CGT--G---T--TC--AA---GA---TTC-A---------TGTATA------CAT-----------------------TT--A---C-GTG--A-C-A----TTAAC-GTCC-CA-A-TT-TTTAAATGAAGGG----T--TG--TG----CT----ATCAT--TAA--GTC---GGC--AT-TAAATATAG-G----CGGC-TT---------ACC-T-A-ATG-G-G---TG-AC-G-ATTG---AGCCTT-TG--C--T---A-AGCTATT-GGGTCACCGAGG-AAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGACT-AG-GAA-AT-TCGGA--T-GTGT------AA------T-TGTTT--CCTGTAA-G-ACGACAG-G----T-TGGTTG--AAACC-A--T-----GAGACGA-TTAGGCCTAAT-GAA--ACATAAAACAGA------TAA-------GATACCAAT-TCTCACATACC-ACTACGTACACTAATGA---AAATAACA-ATGCATAA-T--CGTCCAAACAAAAA-CAA-CAC-TTGT-TC-TA--CG-AAGCTC-------TCGA-G--TTTT-TTAA--TTAGTAA-------CA----ACCAA--GGAGTGA-C-GTC-ATTT---G-GT-TGT-ATT---AC--TA-AGTA---CGATTGA-CGAAGGCGC-AGCGGC--TC-T---A-C-AATGATATAT--CAA-CAAA--AGG-C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCAATA-T--T---AAT-TG-AACA-TTAAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-A-----GTT-C----GTT-G---T-ATC--AA--CAA---TTA-A---------TGTAAG------GATCGTC----AC------------ATT--AA--C-GGT-GA-C-A----TTAAA-GTCCTCA-G-TT-TT-AAT------------------------------A-CA----------C---GGCGCAT-TAA-TATGG-G----CGG--TT---------ACC-T-A-ATG-GC----TG-AGAG-CTTG---GGCCTG-TG-----TG--A-AGCTACTAGGGTCACCGCGT-A-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGACT-AG-GAATAT-TCGGGACT-G---T-G---AA------T-G-TTT--CC-GTA--G-ACGACAG-G----T-TGGTTG--AAACC-AATT-----AGCACGAATTATGCCTA--CGGAGAA--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC----TAAACTAATGAC-GAAATA-CAGATGCATAACTG--GTCCAAA-ACATT-CAA-CAC------ACGAGAAC-TAGCCT-GC----TGCTACGATTTTTGTTCA--CTG-TAG-------TAGGC-AT-AA--GGA-TGA-C-GTC-AATTTGTGTGT-TGT-TAT---ACG-TA-AG-A---CAGT-GATCGA-G-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGA--TCAtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GTTGA-C-A-TT-AA----GTTTC---CGGT-T---T-ACT--AA--CGA---TTT-A------------ATG------CA--AGG----ATCGTACT------ATT--AA--C-GTG--A-C-A----TTAAAGTTCCTCA-A-TT-T--AAT-GAAGGT----T--TG--GG--GGCT----AGCAT--TAA--GTC---GGC--AT-TAAATATTG-G----CCGCTT-----------CC-T-A-GTG-GC----TG-GC-G-CTTG---G-CCTG-TG--GATTG--A-AACTATTAGG-TCACCG-GG-A-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGA--T-G-GTTGA---AA------T-G-TTT--TC-GTA--G-G-GACA-AG----T-TGGTTG--AAACC-A--T--------------TAGGTCTTATCGAC--A--TGAAGCAGA------TAGCCTATAGGTAAC-AAT-CC--ACATACC-AC--CA-AAAC-AACGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAAACAAACACAT-G-----AAAACGTAGAACTGC----CTCGATT--TTTTGTTTA--C-GCTAG-------TAGGAAAT-AA--GGAGTGA-C-GTC-ATTTTGTG-GTCTGT--AT---ACGCTA-AG-A---CGATCGA-CGA-CGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGA--TT-GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAAT-TGAATTATC-TA-----AAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT-T--GGTTT-GTA-TTT-AATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GGT-CCT-TTTGCTCTTTTGAAAATTCGAA-GCGAAGCTCTGTTAATTTGTAAT-ATATAACCCTTCTGAA--CGCTAAATGAAGCGAATATGAAAAT-ATT-AAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAAATAGGCCCA--AGCC-----ATTATGTAAGTGAATT-C---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATATT--T---AATG-G-A-CA-TT-AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTTA--A-T-GT-GA-CAA-TT-AA----GTT-C---CGTT-G---T-GTC--AACCCGA---TTC-A---------TTTATA------C-C-AT-------------------ATT--AA--C-GTaaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : CATTGCGGTGA--AAT-TCCA----GTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATTA-TCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCAATA-TTCT---AATGTG-A-CA-TTAAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTTA--A-T-GT-AA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTCAA---------TTTATA------CAT----------------------ATT--AA--CGGTG-AA-CAA----TTAACAGTCCTC--A-TT-T
blockSeqs : G GC C G AATTGT T C T TC . C C TAATGA G A A TC ATAT . G C A GTTA T C GG A . T C CT . T . C . GC . . T A C TCC AT T A TGCA T C CA A T G C . A A G C A TTG C T T T T A A GGCCCA TAATCA A A . AAG A C G A C T C T AA T TC TCA G G A T C T TC TA . AT T TT A . T A A . A . T TTG T TTT A . CCC . CA TTTAATGAAGGAATCCTTTCG TA AC G GAGACACTTT A . C . T TT GTTCTTGGGCGGGCTA AT AC . CA . A C . CTT A TA . GCA . A A . G GAT . G A G G C GA C . AA A G GTT . C T C T G TGTGCAAATGT TG T A . GA TC A . ATTA A AA AACA . CCTATAG C T T A TACGT T AT A G C ACC C A A TGTTCT C GT CACT CGAT T TTAG TGAAGGCCAAT AG G C . A T C AAAT C G T . C T AAGGCGC A T AA . G . C . C TT . C GT AACTTGG
blockSeqs : . . C TG . . . . . A . A . A . . T . . . A T . . G . . . . GC . . . T C . . T . . . A . . . . T . T T . T A A TA AT A A . . . . . . . . . C . . . CTA G . . . . . T . . . . . . . . . . . . . . . . . A . C . A AATGTAAAGGATCGTCAGC . . . AGATCA A . . . . AT GTTTCTTTGGGCAT . . . GC . A . . TT . GT . T . . . . . A . . G G C T AA . . CG . . TA . G . . . . TGGTTGAAATG . . . . GA C . . TTA . AA AGAA . . C C . . ACGT T C . . . C C . . TTGTTC A A TGCC GG A CTC TAGGAAAT . G . . . T . ATT . . . . T . AGGCC G C A . . . . . . . . C T ACTTGG
blockSeqs : . . . . . T . . . . . . . A A . . . . . . . . . . . . . . . T G . . . . . T . . . . . . . . . . . . . . . . . A . G . T TGTAAGGACATGTCACA . . . GAACAA A . . . . T GTTTGGGGGCTAG . . . . . A . . TT . A . G . . . . . C . . A G C A A . . G . . TT . T . . . . TGTGTAATTG . . . . G T . . TA . TA CA . . . C . . CA . . . . . G C . . ACG A G GCT TT C CTG TAGGCAT . G . . . T . TAT . . . . T . GCCA G C T . . . . . . . . C . GC
blockSeqs : . . . . . . . . . . T G . . . . . T . . . . . . . . . . . . . . . . . A . C . A ATGCAAGGATCGTACT . . . TGACA G . . . . T GGTTGTGCTAT . . . . . A . . TT . A . . . . . . . . . . A . C C A . . A . . TT . . . . . . ACTGTGAATG . . . . G T . . TG . A CA . . . . . . T . . . . . G . . . ATG . T C G T CGC CAACC . G . . . . . AT . . . . C . ACGC G G T . . . . . . .
blockSeqs : . . . . . . . . . . . G . . . . . A . . . . . . . . . . . . . . . . . A . C . C TGTAAGGATCGTCAC . . . GACG A . . . . T TGGGGGCTA . . . . . A . . T . A . . . . . . . . . . . . . . A . . T . . . . . . . . . TGTTAATTT . . . . A T . . T . C . . . . . . . AT . . . . . . AG . . T . .
blockSeqs : . . . . . . . . . . . G . . . . . T . . . . . . . . . . . . . . . . . A . C . C TTTATACATATGA . . . GACA . . . . . T A . . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . . T . . . . . . . . . . . . . . . . . G . C . A TTTATACCAT . . . GACA . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . A . C . T TGTATACAT . . . CA .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . C . C TTTATACAT . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : T** **** A* ** *** TNTAAGGATCGTCAC******************************* GACA******** T* GTTTGNGGGCTAT************** *** **** TT********** G*** *** N**** ** ******* TT* ***** TGTGTAANTG**************** ** G* T***** ** TA******* AA ****** C* G** CGTTC**** N* CGCC**** CTC*** TAGGCAT********* AT***** *** AGGCC*** T**** **
originalCons : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---T-ATC--AA--CGA---TTC-A---------TTTATA------CAT-ATG----A-------------ATT--AA--C-GTG-GA-C-A----TTAAAAGTCCTCA-A-TT-TT-AATTGAAGGT----T--TG--GG--GGCT----A-CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCCTT---------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TG--A--TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGACT-AG-GAA-AT-TCGGA--T-G-GTT-A---AA------T-T-TTT--CC-GTA--G-ACGACAGAG----T-TGGTTG--AAACC-A--T-----AGCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAAT-CC-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG-CGTCCAAACAAAAA-CAA-CAC-T-GT-NC-AAAACGTAGGCTCGC----CTCGACG--TTTTGTTNA--CTGCTAG-------CA----AT-AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGT-AAT---ACG-TA-AG-A---CGATCGA-CGA-GGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
finalCons : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATTA-TCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTA-TCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAAATA----TA--AGCC-----A-TATGCAAGTGAATT-C---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAATT--CA--A-AA--TA-TTTA--A-T-GT-GA-C-A-TT-AA----GTT-C---CGTT-G---TA-TC--AA--CGA---TTC-ATNTAAGGATCGTCAC-------------------------------ATT--AA--C-GTGACA--------TTAAAAGTCCTCA-A-TT-TT-AAT-GAAGGTTTGNGGGCTAT--------------CAT--TAA--GTC---GGC--AT-TAAATATTG-G----CGGCTT----------ACC-T-A-ATG-GCG---TG-AC-G-CTTG---GGCCTG-TGN----TG--A-AGCTATTAGGGTCACCGCGG-A-GTG-A-------TTTTC-G-C-TCAAAA-ATT-AAG-----ACTCGACT-AG-GAA-AT-TCGGATGTGTAANTG----------------TTT--CC-GTA--G-ACGACAG-GT-----TGGTTG--AAACC-ATA-------GCACGA-TTAGGCCTAATCGAN--A--TGAAACAGA------TAG-------GTCACCAATC-C-CACATACC-AC--CGTAAACTAATGA--GAAATA-CA-ATGCATAA-TG--GTCCAAACAAAAA-CAA-CACCGTTC----AAAACN-AGGCTCGCC----TCGACG--TTTTGTTNACTC---TAGTAGGCAT---------AA--GGAGTGA-C-GTC-ATTTTGTGTGT-TGTAT-----ACG-TA-AG-A---CGATCGA-CGAGGCC---GGCGGCGATCT----AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG
Alignments
lowQualScore : 11 1 222222 1 1 1 22 1 1 333333 1 11 2222 1 1 1111 1 111 1 1 1 11 1 1 1 1 11 1 1 1 1 1 22222 2222 11 1 1 1 1 1 1 1 111 1 1 11 22222 2222222 11 111 1 222 11 33333333333333333333333333 111 11 111111 4444444444444444444444444444 1111 1111 1111 2222222222 3333 111 11111 11 2222222 111 111 11111 1 2222222222 111 222222222222 1 111111 11 3333333333 11111 1 3333333333333 222222 111111 11111 1111 2222 11 1111 1111 111 44444444 11 222222222 222222222222 6666666666666666666666666666666666666666666666666 1 11111111111 22222222 11111 11 11 1 11 3333333
lowQualScore : 1 88 0 1 444444 3 3 0 00 3 1 3 111111 6 7 3 88 5555 3 6 3 7 5555 7 3 0 666 3 3 7 3 88 5 5 5 5 88 22 5 5 5 5 5 77777 22 7 7 8888 7 2 33 0 5 0 3 3 7 3 6 3 7 777 0 3 3 0 3 3 3 33 88888 6666666 3 33 777 0 5 0 4 4 4 4 4 8 55 8 55 222 2 3 3 3 3 7 3 3 44 3 44 3 3 44 3 3 3 3 3 3 6666 3 555 33 555 00 44 44 555 777 44444444444444444444444444 55 111 3 3 22 4 4 444444 3 3 5 5 5 77 5 5 6666666666666666666666666666 77 0000 77 5 1 5 2222 4444 7777777777 6 6 4444 6 6 6 111 88888 6 6 99 44 2 2 11 6 6 1111111 222 6 6 444 66666 3 6 6 6 6 0000000000 000 888888888888 6 3 999999 55 3333333333 6 66666 1 2222222222222 6 99 888888 999999 66666 6666 99 99 6 8888 6 7 55 1111 6 0000 99 6 111 11111111 44 666666666 111111111111 1 1 7777777777777777777777777777777777777777777777777 6 3 888 3 6 6 99 6 6 6 88888888888 3 6 99999999 1 1 88888 6 6 11 8 8 8 11 0 0 2 55 4444444
lowQualScore : . .. . . ...... . . . .. . . . ...... . . . .. .... . . . . .... . . . ... . . . . .. . . . . .. .. . . . . . ..... .. . . .... . . .. . . . . . . . . . . ... . . . . . . . .. ..... ....... . .. ... . . . . . . . . . .. . .. ... . . . . . . . . .. . .. . . .. . . . . . . .... . ... .. ... .. .. .. ... ... .......................... .. ... . . .. . . ...... . . . . . .. . . ............................ .. .... .. . . . .... .... .......... . . .... . . . ... ..... . . .. .. . . .. . . ....... ... . . ... ..... . . . . . .......... ... ............ . . ...... .. .......... . ..... . ............. . .. ...... ...... ..... .... .. .. . .... . . .. .... . .... .. . ... ........ .. ......... ............ . . ................................................. . . ... . . . .. . . . ........... . . ........ . . ..... . . .. . . . .. . . . .. .......
lowQualScore : 0 33 3 0 777777 3 3 7 00 3 0 3 000000 7 3 3 33 0000 3 7 3 3 3333 3 3 7 777 3 3 3 3 00 5 5 5 0 55 00 5 5 5 5 0 00000 00 3 3 3333 3 5 88 0 5 0 3 3 3 3 7 3 3 000 0 2 2 0 2 2 2 88 22222 0000000 2 22 555 0 7 1 4 4 4 4 0 0 55 0 55 000 5 6 6 6 6 3 3 3 66 3 22 1 1 22 1 1 1 1 1 1 5555 1 444 55 444 33 22 22 444 555 00000000000000000000000000 00 444 6 6 33 0 0 666666 2 6 0 0 0 99 7 7 0000000000000000000000000000 99 7777 99 7 4 7 1111 2222 5555555555 7 7 3333 7 7 7 777 33333 7 7 22 22 5 5 88 7 7 7777777 888 7 7 333 77777 8 7 7 7 7 8888888888 222 555555555555 7 3 333333 88 3333333333 7 77777 7 0000000000000 7 22 333333 222222 77777 8888 22 22 7 8888 7 3 88 2222 7 0000 22 7 777 77777777 33 333333333 777777777777 0 0 2222222222222222222222222222222222222222222222222 7 3 000 2 7 7 22 7 7 7 77777777777 7 7 00000000 0 0 00000 7 7 00 0 0 0 00 8 0 5 88 5555555
consensus : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATT-ATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAA--ATA----TAAGCC-----A-TATGCAAGTGAA-TTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTT-A--AT-GT-G-AC-A-TT-AA----GTT-C---CG-TTG---T-ATC--AA--CGA---TT--NA---TGT-AAGG-AT-C--GT-CA-C-ATT--AA---C-G-T--G-A-C-A----TTAAAAGTCCTCA-A-TT-TT--AA-T-GAAGGT----T--T----GTGGG----CTAT--CATTAA--GTC---GGC--AT-TAAATATTG-G----CGG-C--TTAC--------C-TA-ATG-GCG---TG-AC-G-CTTG---GGCCTGTG--NTGA-A-GCTA--TTAGGGTCACCGC-GGA-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGAC-TAG-GAA-AT-TCGGATG-----TGT--AA--ATGTTT---C--------C-GTA-GACGACAG-GT---TGGTTG--AAACC-A--T-----AGCACGA-TTAGG-----CCTAATCGA-------N--A--TGA-AA--CAGA------TAG------GTCA----CCAAT-CC-CAC--AT--ACC-AC--CGTAA-ACTAATGA--GAAATA-CA-ATGCATAA-TG--G-TCCAAAC-AAAAAC-A---ACAC-CGTTC-AAAAC-NAGGCT--CGC----CTCGATG--TT------TTGTTNA--CTCT----------AGT--AG-G---C--A--TA----------A--GGAGT-GA-CGTC-ATTTTGTGTGT-TG-T--A-TACG-TA-A----G-A----CGATCGA-CG-AGGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
Reference ( family-1501 ) : NNATGGANAAATGGTGTACACTTTGGCTAATTTGCATAGCG--CATATTCGGTCTNAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAATAGA-CAAAT-TGNATTATC-TATAA--AAGTATGAGTAATTCGGAAAAAAG-TTCTT--CCTCAT-T-TGGTTT-GTAGTTT-ACTCTATCCAGGAGTT-GGAATGTGTCTGGATTGTTT-ACAAACGG-G-ACCG-GATAG-GGTTCCT-TTTGCTCTTTTGAAAATTCGAAAGCGGAGCTCTGTTAATTTGTAATTATGTAACCCTTCTGAAAACNNTAAATGAAGCGAATATGAAAATTATTTAAAAATATTTGCCAATATGCAGGCTGAAAAATCCTCTTCCTCATTNNAATGATTAGTATCCA----GTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATT-ATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAAGTATGGAGG-ACTCCTGAAAATGCTAATGACT--CGG-AAGCGATTTTGA-AATTAATTTAAAA--ATA----TAAGCC-----A-TATGCAAGTGAA-TTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAATA-T--T---AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTT-A--AT-GT-G-AC-A-TT-AA----GTT-C---CG-TTG---T-ATC--AA--CGA---TT--CA---TNT-AAGG-AT-C--GT-CA-C-ATT--AA---C-G-T--G-A-C-A----TTAAAAGTCCTCA-A-TT-TT--AA-T-GAAGGT----T--T----GNGGG----CTAT--CATTAA--GTC---GGC--AT-TAAATATTG-G----CGG-C--TTAC--------C-TA-ATG-GCG---TG-AC-G-CTTG---GGCCTGTG--NTGA-A-GCTA--TTAGGGTCACCGC-GGA-GTG-A-------TTTTC-G-C-TCAAAA-A-TTAAG-----ACTCGAC-TAG-GAA-AT-TCGGATG-----TGT--AA--NTGTTT---C--------C-GTA-GACGACAG-GT---TGGTTG--AAACC-A--T-----AGCACGA-TTAGG-----CCTAATCGA-------N--A--TGA-AA--CAGA------TAG------GTCA----CCAAT-CC-CAC--AT--ACC-AC--CGTAA-ACTAATGA--GAAATA-CA-ATGCATAA-TG--G-TCCAAAC-AAAAAC-A---ACAC-CGTTC-AAAAC-NAGGCT--CGC----CTCGACG--TT------TTGTTNA--CTCT----------AGT--AG-G---C--A--TA----------A--GGAGT-GA-CGTC-ATTTTGTGTGT-TG-T--A-TACG-TA-A----G-A----CGATCGA-CG-AGGC-C-GGCGGCGATC-T---AAC-AAT-ATATAT--CAA-CAAA-GGGG-CGA--TTAAAAAG-TGAGCAGTTACAGCTCGGAAAAACA
gi|1 : G-A-CA-TTA---CC-TACATTTGCTCT-CA--ATAA--TA-TCT-A--ATTGT-G-AC-AATC-CATCCCGTT-C---CG-TTG---TGATCGAAA--CGAACTTT--TA---AGC-TAGG-AT-CTTGTTCA-T-GTT--AATGAC-G-TA-G-A-C-GAT--TTCAAAGTCCTCATA-TTCTT--AA-TTGAGGGTATGAT--T----GTAGGTGGCCTGTGGCATTAA--GTCTTTGGC--ATATAACTATTG-AGGACCGG-CCTTTACATGTCCATC-TA-ATGAGCAGAATGGAC-G-CTTGCAAGGTCTGTG--C--A-ATGCCAAGTTACATTCAC-GC-GGG-ATG-AAGTAGATTTTTC-G-C-TCAAAA-AATCAAGGATAGACTCGAC-TAG-AGA-AA-TCGAATGGGTTATGG--AATTATGCTT---CTTCTGTGTC-GTACGAC-ACAG-CTCTCTGGTTGGTAATCCTA--TACCTAAGCACGA-TTAGAGGACCCCT-ATCGAGTAACCTT--A--TGGCGATTTAGATC----TAG------ATCATTGTCCAAT-CA-CCCTAATGGATC-TT--TATGACACTACTTG--GCTATA-AT-ATGTCCAA-TA--T-TCCCACC-AAACAC-A---A-ACACATTC-GAAAC-GAGACTAGCGC----ATTGCTG--CTCATGGATTATTTG--TTCTTGAAACATTGAGT--AGTGAGCC--A--TAGTAAGATGCTA--GCAGTAGACCGTC-TCTTTGTGTGT-TG-T--A--ACG-TA-ATGTCA-AACCCCAATCGA-CG------C-AGAGGCGATC-TCCAAACTAAT-A
gi|11 : atcaatcaacaagaatatcttattcttatggtactgatggagagagaatagaaagtatttgatgttatgtctttgtagagcgtaatgttgggatggtcaattgcgtcataaaagattttttaagtactggttccgactgaatctaagttctttttaacaggtttgtgttgagtcccttggattaagaatcgatgtgtcatcttgtacatttgagtcattgtgaccaacaaattattgatttctacaaactatatctcttttcattccagtagccctaggttaactataggacggtcaataatgatggtagtgtaatcatatttctgcaacgctgagttacgctcaggatttcaacataacacaacactggttaactgtgacagtgcatttttcaaaaacattcctcttgtttctttgacgcaagatcatcatatattagtgtgacagaaattgatctatcaagactttatatttggtaactgggttgacttctttcaggggataggacttgcagcacagctcgtgcatatgaactctcataaggagtatcccactaatgagcacacaaagttaaggtcggacgtcagaatactcgtgcggtaaattagatgtggtgatgagaaatgctatctctgattggaacgttcagtcataatactctttttgttattcagtcctgaagctcggtactatgctggatctagcaaaaacgcatttaaatttactgaattagctatgataaagctacagactaatatttgtgatgcataatcttactgaagatactaccattgttggatactctcgtgatagatgtagagggacaatctactagttgcagatacacgtatcaccactacgttccttttattgctaggatttcagaattgcaataatggaactgattgtactgtctaggcactgcttctgtattaaatttccgtagaatatagatcaatttcttgtatccttttattgtgaataccagattttgttagaataattttgatagaactggtatactgttactgtattgacaatgatgtaaatgatcccctagttaattagaacgatcattatggtctttctctctttaagtgttttcaaaaatcatttagcataagcacccattattagtcgtatacatgaataccagctgaaaatattgatacgaccatgaaatcattatgcgcaccttttgttcggtcaaggacatggtgcatggttgatcatttcaaaacaacagtgctaccgttttaatatatatatcaaatggcagcatgattataatatttgttctgatgtgaagtaatctctatatctagagtgttttgccttagctctgttatagctgattcattgttcaaacagcaaagtgatcacaatgttgatgaataaacacggtggtaacctcagctagccatggtaggtgacataggctggtgatgaactcatgcgcttcttgcgacagctctagtagggatttcccaaaacccgccagtggcttaagtgtctgacaatttgcagagttttgaattcggatagattattggtgatttctttataattacttagataatactgcttgttactcaagttcaattgtctacatgcccatcatcatatctgttgctcgacaactctccctcctgtaagaaaagtatttaaacactctggtgtgttgggaaaagatgatggtggtaatcagatgatagttgtatacggcttgttactctttagcgcaaagtacccccttgccttgtttccaatacatatatttattaacagcacttcactcacataatttctgttaggttggaaatggttacatgaaaaatggactcttgaattttcagcttaaagagttatgacggagatgcgttatataggctcttgttcttctatagctactatggtttgtgttccaagatctcgcccctcaatgatctggcacataatcataatctcgcggaccctcgaatgttaacctgcttctcattagattaatatgctgcacatgttaagtcctcaATGGATAAATGGTGTACACNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN---NN-NNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNAGA-CAAAAATGTTTTATT-TATAA----GTATGAGTAATTCGGAAAA-AG-TTCTT--CCTCAT-T-TGGTTTGGTAGTTT-ACTATATCC-GGAATT-GGAATGTGTCTGGTTTGTTT-GCAAACGGCG-ACCG-GATAGCGGTTCCT-TTTGCatttatttagagacaaactgtttgttacctggtgggctcgctttttaaagcacgttgaacagatgtgctctaaacacctcagaagtggatatacagtaagaccccccccccccccaatatcttccccgatatcgcgtgacttctcaggaactttaatgtgcaaccgacactgacttggcatgtggatcgtagggccatgattcatcgtcttcgtacgctcataaattggtctcgggatgaaggaggtacgggagttcgtatctcaattttctgattaatattgtgtttatgtatattttgatatatctatacgaaacttagtgttcatctttatgtattctgcttgatattgcaagactttcagactctctctcttagtagcgagatgacgtatgtgttttctttttcttagatgtaacaatatgtagcaaggttaatatattgtggccttgaattttcgattcctcagtttatacgataattttatattgttagatggtaacaactaatagtcatatcatcttactagagcaagcacatattctggtgtctagcttattcaaaattaggcacctagtcgactgagaatatatctgtgatattaaaatatatgttttaatatgatttagggcctccaattagaatcgatagacaatctctctctctggtcctcaaacagcaccatactcgactctcatatattgaaatgacaagagatcctggttgagtatgctcaggccgaaatatttcatttttctcagtcaaagcaagattctcgaaatattggctagctactgtgtgtgggtttctatagactcttgtggttataaagtattatattgaatattgtctttagatattctggtgtgg
gi|13 : -ATCAGG-ACC--G-G-TTG-T-A--TCAATATT--T---AATTTG-A-CA-TTAAAG-C-T-CATTAAAT-T-CA--A-AA--TA-TTT-A--AT-GT-G-AC-A-TTAAA----GTT-C---CG-TTGTTTT-ATC--AA--ATA---TT--TA---ATG-AAGGAAT-C--CT-TT-CGATT--AAAC-C-G-T------C-A----TTAAAA-TCCTGG-A--T-TT--AA-T-GCACGT----TTCT----TTGGG----C-AT--CATTAAACGTT-----C--AT-T-AATA-TG-G----C
gi|15 : aagtgtccactgtcattgttctaccGG-ATC-CGCG-TTG-TTA--TCAGAA-T--T---AAT-TG-A-CA-TTGAAGTC-T-CATTAAA--T-CA--A-AA--TA-TTT-ATTAC-AT---AC-A-TT-AA----G---A---CG-TTG---T--CC--AA--CGA----T--AA---TGT-AAGG-ACAT--GT-CA-C-A-A--AA---C-G-TA-G-ATC-A----TT-AAAGTCC
gi|15 : --TA-TTT-A--AT-GT-G-AC-C-AT-AG----ATT-C---TG--TG---T--TC--AA--GTA---TT--TA---TGT---GG-AT-C--G---------C--AA---C-G----G-A-C-T----TTAAgttgcgatccacataaatacttgaacacagaatctatggtcacattaaatac
gi|19 : ggatccgcgttgttatcagaattaattgacattgaagtctcattaaatcaaaatatttattacatacattaagacgttgtccaacgataatgtaaggacatgtcacaaaacgtagatcaTG-T-A--TCA-TA-C--TTCAGATGTA-A--A-TTAATGTC---CATTAGAT-T-CATAA-AG--TA-TTT-A--AT-GT-G-AC-C-AT-AG----ATT-C---TG--TG---T--TC--AA--GTA---TT--TA---Tc
gi|2 : gcaGG-ACC-CG-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTTAA--AT-GT-GAAC-A-TT-CA----GCT-CTTGCGTTTG---T-ATC--AA--CGA---TTAAAA---TGTAAAGG-AT-C--GT-CAGC-ATTTAAG---C-G-T--G-A-C-G----TTAAAAGTCCTCA-ACTT-TT--AATT-GAAGGT----T--CTTGGGCGGG----CTACA-TATTAA--GTC---GGCCAAT-TAAAT-TTGCG----CGGCC--TTAC--------CTTA-ATG-GCT---GG-AC-G-CTTG---GGTCTGGT--GTGAGA-GCTA--CTAGGGTCAGCGCGGGA-GTGCA-------TTTTC-G-C-TCAAAA-A-TAAGA-----AGCCGAC-TAGCGAA-AT-TC-GATG-----TGC--AA--ATGTTCTTGC--------T-GTA-GACGACAGAGTC--TGGTTGA-AAACC-A--T-----AGCACGA-TTAGG-----GCT-ATCGA-------G--A--TAA-AA--CAGATAGGCCTAG------GTCA-----CACTCCC-CAG--AT--ACC-AC----TAA-AGTAATGA--GAAATA--A-ATGCATAA-TG--GCTCCAACA-AAAAAC-AAGCACAT-AG--C-AAAACGTAGGCT--CACGGGGCTCGATC--TT------TTGTTGAACCTGT----------AGTGAAG-G---CCAA--TA----------AAGGAAGT-GA-CGTCAATTTTGTGTGT-TG-T--A-TACG-TAGA----G-A----CGATCGA-C----GC-CAGGC-GTGATT-A---AAC-AAT-ATATATTGCAG-CAAAGGGGG-CGA--TTAAAAAGCTGAG--GCTAC-GCCC--AAAAACA
gi|21 : ataaacaAAT-A-CT--A-AA--TA-TTT-A--AT-GT-G-AC-A-TT-AA----GTT-C---CG-TTG---T-ATC--AA--CGA---Taaatgagtgtataacagtaagagaccgccccccccccaataatccttcccgcgtatggactgcaggacttttatgcaccacggctgagcttggatggtcgtagcccgcaatatgttcacgtaaattgggggggcgggggttcgagcatattttgattataatttttaatattaaactatacaactaaatattgttgctcttataattttagagatactttgcagaaattttatagtttttttcgagattgcagttgccaagaatatttttttttctttatttagcatgtaatatttccagagtgtaaaatttcctcgatccagtaacttaatttatatattgtttcagaagaacaaaatatgcgattaattagctgaaaattcttacccatataaatagcggatatattttttaaaatatattaaattagcggacctaaattaaaattaatttctttttgccacatttaccgacccttcattattttgaaacagcgatcggtagggcaaggcaatattttgatttttctcagttcaaaaaataatttagaatttaggctcctttttttgctgtgtgtggtttaaaatgtattttatttgattgtctatgatttgtttggggtgggatcctccttctgcgatttgcctccaagcaaacatcttttcagttcaacacaatttttttaacaagggattttttcaaaaggtataagcagtatttctgcgggagtgatcataagaaatctgcgtaagccatgctgcaagggtctttcagaatttaatttgcaagcgtgtgtgtgtgcttattagtacacgcacctgcacgggatattcagggaactggatttgcaatcccaagtcgtgccatggaacgtttctgcactttttttacaaatggataatcgccacacataagaaatattacttgctgcaaaaagaaaagctgccatttcaaagtgtttgctaattcctgctgaataggtatgtagaagctccgctccccccaatttttgtgctttgtattattaaaatgctgtagctttgcaataatgttacgcgtaaacgttaaagataaaaagaaagaaagacaaagaagagtcggcgtgcttcagtacgaaaggccagttgggctcattaacttaaatcgttattcacgaattgattgaaatatatcattaatatttatcattaaattacgatttagtattcacttaaatgacgagataatttactcgtttatattaacgagcggcttttttttttttaaatgagggcccagtatgtatcgcgcttcgtaatttcggcgactaaaagacaatgtggcaacatggcacatgtaaacaataaggcaggaagataaacatacgttgcattatgcggatgtgatctgcaaaagcgtttaatgatggcgtttaatgttgagatttagatattttaatggctcattactaatggtgagtttaataaaggttt
gi|23 : tcAAATCTCGATCCGAACTAAA--ATT-ATC-TTCAT-GGTTCCTTTTataata
gi|3 : ATGGAGAAATGGTGTACACTTTGGCTAATTTGCATAGCGGCCATATT-GGTCTGAAAATTGTGCGGTTTTCAGAGCAATAGACTTTATATAAGGAAAAAATAAA--AAAT-TGCATTATCCTATAATGAAGTATGAGTAATTCGGAAAAAAGATTCTTTCCCTCATATATGGTTT-GTAGTTTCACTCTATCCAGGAGTTAGGAATGTGTCTGGATTGTTT-ACAAATGG-G-ACCG-GATAG-CGTTCCTCTTTGCT--TTTGAAAATTCGAAAGCGGAGCTCTGTTAATT-GTAATTATGTAACC-TTCTGAAAACCGTAAATGAAGCGAATATGAAAATTATTTAAAAATATT-GCTA-TATGCAGG-TGAAAAAT--TCTTCCTCATTTAAATGATTAGTATCCA----GTGCCAA-TTTTCATATCCGAAATCTCGATCCGAACTAAA--ATTAATCTTTCAT-GGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTTAATC-C-GAAGTATGGAGG-ACTCTTGAAAATGCTAATGAC---CGG-AAGCGATTTTGA-AATTAATTTAAAAATATA----TAAGCC-----A-TATGCAAGTGAATTTC---TTCTTCATTTAA-TATTTAGT-ATCTGG-ACC-CG-G-TTG-T-A--TCAAT--T--T---AATGTG-A-CATTTAAAGCC-T-CATTAAAT-T-CA--A-AA--TA-TTT-A--AT-AT-G-AC-A-TT-AA----GTT-C---CG-TTG---T-ATC--AA--CGA---TT--CA---TTT-ATAC-AT----AT-GA---ATT--AA---C-G-TGAG-A-C-ACTTTTT---AGTCCTCA-A-TT-TT--AA-T-GAAG---------T----GGGGG----CTA---CATTAA--GTC---GGC--AT-TAAATATT--G----CGG-C---TAC--------CATGTACG-GCGCA-TG-AC-GACTTG---AGCTTTTG--ATGA-A-GCTA--TTGGG--CA-CAT-GGA-GTG-A-------TTTTC-A-C-TC-AAA-A-TTAAG-----ACGCGAC-TAG-GAA-AT-TCGGATG-----T-T--AA--TTTGTT---C--------C-GTA-GACGACAGAGC---TTGTTG--AAACC-AT-T-----AGCACGA-TTAGG-----CCTAATCGA-------C--A--TGA-AA--CAGA------TAG------GTCA----C--AT--C-CAC--AT--ACCAACA-CGTAC-AC-AATGAATGAAATA-CA-ATGCATAA-TACCG-TCCAAAC-AAAAAT-A---ACAC-TGTTCTAACAC-AAGGCT--CAC----TTCGAGG--TT------TTGTTTA--CTCT----------A--------------A--CA----------A--GGAGT-GACCGTC-ATTTTGTGTGT-TG-TAAA-TACG-TA-A----G-A----CGATTGA-CG-AGGC-C-GGCAGCGATC-T---AAC-AAT-ATATAT--AAA-CAAA-GGGG-CGT--TTAAAAAG-TGAACA-TTACA-CTTGGAAAAATA
gi|5 : atTGGTAATGACT--CGG-AAGAGATTT-GA-ATTT--TTTAAAA--ATA-----AGGCCTAATCA-TATGCA-GTGAA-TTC---TTCTTCATTTAAATATTTTAT-ATCTGG-ACC-CG-G-TTG-C-A--TCAA-A-T--TCTAAATGTGGA-CA-TTAA-GCC-T-C-TTAAAT-T-CA--A-AAATTA-TTT-A--AT-GT-G-AC-A-TT-AA-----TC-C---CG-T-G---T--TC--AA---GA---TT--CA---TGT-A-------------TA-C-ATT--TA---C-G-T--G-A-C-A----TTAAC-GTCC-CA-A-TT-TTTAAA-T-GAAGGG----T--T----GTG------CTAT--CATTAA--GTC---GGC--AT-TAAATATAG-G----CGG-C--TTAC--------C-TA-ATG-G-G---TG-AC-G-ATTG---AGCCTTTG--CT-A-A-GCTA--TT-GGGTCACCGA-GGAAGTG-A-------TATTC-AACATCAAAA-AGTTAAG-----AC-CGAC-TAG-GAA-AT-TCGGATG-----TGT--AA--TTGTTT---C--------CTGTAAGACGACAG-GT---TGGTTG--AAACC-A--T-----GAGACGA-TTAGG-----CCTAAT-GA-------A--ACATAA-AA--CAGA------TAA------GATA----CCAAT-TCTCAC--AT--ACC-ACTACGTAC-ACTAATGA---AAATAACA-ATGCATAA-TC--G-TCCAAAC-AAAAAC-A---ACACTTGTTC---TAC-GAAGCT---------CTCGA-G--TT------TT-TTAA----TT----------AGT--A--A---C--AACCA----------A--GGAGT-GA-CGTC-A-TTTG---GT-TG-T--ATTAC--TA-A----GTA----CGATTGA-CGAAGGCGC-AGCGGC--TC-T----AC-AATGATATAT--CAA-CAAA--AGG-C-ATTTTAAAAAG-TGAGCAGTTACAACTTGGAAAA
gi|6 : -ACCCGG-ACCACG-G-TTG-T-AAATCAATA-T--T---AAT-TG-AACA-TTAAACCCCT-CATTAAAT-T-CA--A-AA--TA-TTT-A--AT-GT-G-AC-A-TT-A-----GTT-C----G-TTG---T-ATC--AA--CAA---TT--AA---TGT-AAGG-AT-C--GT-CA-C-ATT--AA---C-GGT--G-A-C-A----TTAAA-GTCCTCA-G-TT-TT--AA-T-ACACG-----------------G----C--------------------GC--AT-TAA-TATGG-G----CGG----TTAC--------C-TA-ATG-GC----TG-AGAG-CTTG---GGCCTGTG---TGA-A-GCTA--CTAGGGTCACCGC-GTA-GTG-A-------TTTCCCG-C-TCAATA-A-TTAAG-----ACTGGAC-TAG-GAATAT-TCGGGAC-----TGT--GA--ATGTTT---C--------C-GTA-GACGACAG-GT---TGGTTG--AAACC-AATT-----AGCACGAATTATG-----CCTA--CGG-------AGAA--TGA-AA--CAGA------TAG------GTCA----CCAAT-CC-CAC--AT--ACC-AC----TAA-ACTAATGAC-GAAATA-CAGATGCATAACTG--G-TCCAAA--ACATTC-A---ACACACG----AGAAC-TAGCCT---GC----TGCTACGATTT------TTGTTCA--CTGT----------AGT--AG-G---C--A--TA----------A--GGA-T-GA-CGTC-AATTTGTGTGT-TGTT--A-TACG-TA-A----G-A----CAGT-GATCG-AG-----GGCG--GATCAA---AAC-AAT-ATATAG--TAA-CAAA-GGGGCCGA--TCAtagaatctggcccaaactaattttcttctgatatttaactgtgaaaatgggaataaatcaacacaaaaagggagatacttttgaaatgaaaatatttagagtataatcacgtgtatgtaactcataataaagtgaca
gi|7 : catcttcctaT-ATCTGGGACC-CC-G-TTG-T-A--TCAATA-T--TT--AATGTG-A-CA-TTAAAGCC-TTCATTAAAT-T-CA--A-AA--TA-TTT-A--AT-GTTG-AC-A-TT-AA----GTTTC---CG-GTT---T-ACT--AA--CGA---TT--TAA--TGC-AAGG-AT-C--GT--A-CTATT--AA---C-G-T--G-A-C-A----TTAAAGTTCCTCA-A-TT-T---AA-T-GAAGGT----T--T----GGGGG----CTAG--CATTAA--GTC---GGC--AT-TAAATATTG-G----CCG-C--TT-C--------C-TA-GTG-GC----TG-GC-G-CTT----GGCCTGTGGATTGA-A-ACTA--TTA-GGTCACCG--GGA-ATG-A-------TTTTC-T-C-TCAAAAGA---AAG-----AC-CGACTTAG-GAA-ATGTCGGATG------GTTGAA--ATGTTT---T--------C-GTA-GG-GACAA-GT---TGGTTG--AAACC----------------A-TTAGG-----TCTTATCGA-------C--A--TGA-AG--CAGA------TAGCCTATAGGTA----ACAAT--C-CAC--AT--ACC-AC--CA-AA-AC-AACGA--GAAATA-CA-ATGCATAA-TG--G-TCCAAACAAAAAACAA---ACAC-A--TG-AAAACGTAGAAC--TGC----CTCGATT--TT------TTGTTTA--CGCT----------AGT--AG-GA--A--A--TA----------A--GGAGT-GA-CGTC-ATTTTGTG-GTCTG-T--A-TACGCTA-A----G-A----CGATCGA-CG-ACGC----GAGGGGATC-T---AAA-AAT-ATATAT--CAACCAAA-GGGG-CGA--TT-GAAAG-TGAACA--TAC-GC----AAAAACAtagcgcaaaaacaatgagtgatcagagtacagacaccccagcacacacactttttcaactcttcgcgatatgcgacttaggacttttgtggcacccgaccggactctggatggtcgtgggcccaatatgacatggtatatggggttagggttcagatatattttgattatatttttatattaaggctataccctaaagtcccttaatattttgaattttattttttctc
gi|8 : cATAGCG--CATATTCGGTCTCAA---TG-GCGGTTT-CAGAGCAATAGA-TCTATATAAGGAAAAAA-AGATCAAAT-TGAATTATC-TA-----AAGTATGA--AATTCGGAAAAAAG-TTCTT--CCTCAT-T--GGTTT-GTA-TTT-AATCTATCCAGGA--T-GGAATGTG-CTGGATTGTTTCACAAATGG-GGACCGAGATAG-GGT-CCT-TTTGCTCTTTTGAAAATTCGAA-GCGAAGCTCTGTTAATTTGTAAT-ATATAACCCTTCTGAA--CGCTAAATGAAGCGAATATGAAAAT-ATT-AAAAATATTTGCCAATATGCAGGCTGAAA--TCCTCTTCCTCATTATAATGATTAGTATCCATGCAGTGCCAATTTTTCATATCAGAAATCTCGACCCGAACTAAA--ATT-ATC-TTCATGGGTTCCTTTTT-AGTTTGAAATTGGTCAAAATCAACTTTT-ATCACAGAAGTATGGAGT-TCTCCTG-AAATGCTAATGACT--CGGCAAGCGA-TTTGA-AA-TAATTT-AAA--ATAGGCCCAAGCC-----ATTATGTAAGTGAA-TTC---TTCTTCATTTAA-ATTTTAGT-A--TGG-ACC-C--G-TTGCC-A--TCAATATT--T---AATG-G-A-CA-TT-AAGCT-T-CATTAAAT-TCCA--A-AA--TA-TTT-A--AT-GT-G-ACAA-TT-AA----GTT-C---CG-TTG---T-GTC--AACCCGA---TT--CA---TTT-A-------T--AC-CA-T-ATT--AA---C-G-T--aaattgatggattcattagtaaagaacacccctcccttccaccctttttcatttctccccgttaatgcgacttaggactgtgctgcacgactcga
gi|9 : CATTGCGGTGA--AAT-TCCA----GTGCCAATTTTTCATATCAGAAATCTCGACC-GAACTAAACAATT-ATCTTTCAT-GGTTCCTTTTTCAGTTTGAAATTGGTCAAAATCAACTTTT-ATCAC-GAA-TATGGAGGCACTCCTGAAAATGCTAATGACTTGCGG-CAGCGATTTTGATAATTAATTTAAAA--ATA----TAAGCC-----A-TATGCAAGTGA----CAAGTTCTTCATTTAA-TATTTAGTCATCTGG-ACC-CG-GTTTG-TCA--TCAATA-TTCT---AATGTG-A-CA-TTAAA-CC-T-CATTAAAT-C-AA--A-AA--TATTTT-A--AT-GT-A-AC-A-TT-AA----GTT-C---CG-TTG---T-ATC--AA--CGA---TT--CAATTTAT-A-------------CA-T-ATT--AA---CGG-T--GAA-CAA----TTAACAGTCCTC--A-TT-T
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAATGTGTGTGTACATGGAAGTCTGACCAACAATTATGATTTCTACAAACTATTTCTCTTCAGTATCCAGTACGCCCTGGTAAAATGACGTATGATGATGTAGATATTCATTCTGCAAGAGTAAAACCAGTTCAAAAAAAGGTAAGTGAAGCAGTTTTAAAACATTCCTCAAAGTTTGGAGCACAAATGTGACAGAAATATTATAAGACTTATTTGTGTTCTTCAGGTGGAAATTGAGTGTGCAATAAACACTAGGAGTCCTCACTATGCCAAAAGTAAGGGTGAGCAGATCGCCTTAAATGTGGATGGTGCATATGGAAGTTCAGCAGATTCTTTTTATTCGAGGTAATGAACAGAAATGCATTTAATTCAATAGTTGATAAAGCTAAAGAATATTTTCATATCTTAAGACTACCTTGGATATCTGGATAAGAGGAATAAAGTACACGTGTAACTAGTTCCTTTTGCCAGCTTCAGAATTTGCAAATAAGTGTATAATTCGATTAATTTTCTGTATTTTATTTGTGAAATCCAGATTTTGTGATAAATTTATAACAACAGTGTACTGTGTATTGAAATGAAATGATCCTTAAATGACATTTATGGTTTTCTCTTTAATTATAATTTGATAATGATTGTGAAAATAGTGACAATTAGACCATGAAATCAATTATGCTGCATTTAGCAGATGGAATGTGACTTACAAACAGATTCCCTTTTTAATGAATTACAAAGGCAGTTTAATATTTTGGAAGATCTCCTATAAAGTGTTGCTTATTGTTTTTGTAGTGACAAAATGGATAAACAGGTGTTAACCTCAGCTAGCACTGGTGACAAATCTGGAAGATATGCTGCAGGGATTTTCAAAGATGGTAGGTTGACATGAGTTTGAATTGGTGTGGTGTTTCTTTTTAATACTAAAATACTCTGTTCTTAAGTCAATATCATCCTTCAATTATGAATCCTGTACTTGTAAAAGAAGATTGACAACACAAAACTTTTTGGGAAAAGAAATGGGTGTCAGAATGTTTAGGTAATTTTGGAAAGTACATGTATTATATTATTAAACTACACATATTTTGTTAAAGGGTGATGGTTAATGAAAAGAATGGATCTATTTTTCAGAAAGATTAAAGAGAGCTTTTCAGGCTTGCTTCTATTTATGTGTTGTGCAGTTTGTCCCTCTATCT
Unaligned ( gi|10 ): TTATGCACCAGATATTCTTTTTAGAGTGAAATTCCTCGATCAGTAATTCTAAATATTGCTCAGAAGACAAAATATCCTAATTTACTGAAATATTCTAAATATTAATTAAATATAGACATCTAAAATATCAAAGATCATTCCTAAATCTAAAAAAAAAAAACATTTCGTTGCCCTTTACTCGTCTCTATTATTTGAAACAGTAATCCGGTAAGAAGATAAAATTTTTATTTTTCTTAAGCAAAAAAGAA
Unaligned ( gi|12 ): GAATAAAATATAAATTTATTTACTGAAATTCTATTTGTTATGTGAACAAAATTAAGCCGATTTTAGATTTTTTAAAATATAGTTTAAAAAGGCCACTAAATTAAATAATTTTCTTTTTTGGTCCCTGTGATATGGACCGACCCATTATTTGAAAGCGATCAATGGTAGCTACATAGCCAATATTTTGATTTTCCAGTCAACAATTACTAATTTCATGAAGTTTTGGC
Unaligned ( gi|14 ): TGACTCGAATGGTGCCGCAGCCGACCAGGATAGGTCGTCGTAGCCAATGATAGGGGGTGGGGGGTCAAGATATTAATTATATTTTATATAATCTATATTACTAATTATTCCTCTTATATCTTTAGCAATACTCTTCAGAACTTACGTTACGAAATGAAGTTAGTCAGGTTTTTTTGTTTTTTCCATAGATGTACTTTCAGATGAAAAATAT
Unaligned ( gi|16 ): ATATTTTGAATTTTATTTTTTCTCAGCAAAAATAATATCAGAAGGCTGCCGTTTTCTTGTGTGGTTTAAAATATATTTATTTGATTTGAATAATGATTGTGGGGGGTGGGATCCTCTCTGGATTTGCCTCCAAGAACATCTTGTCAGCAACACAATTTT
Unaligned ( gi|17 ): TCAATCAACACAGAATATCTTATTTATGGTACTGATGGAGAGAGAAAAGATGAGGTCATGTCTAGTAATGTTGATGTCAGATCTCATAAGATTTTAAGCTACTGGTCCGACTGATCTAGTTCTTTTTAAAGTTTGTGTTGAGCCCTGGATA
Unaligned ( gi|18 ): AAAGAGGAAAGGTCTAGCCATGACGGGGTCAGGTCAAGTACAGTTTTCTACTGGTCTGACTGGTCTAGTTAAAGTGTTGCGCCCTGCAT
Unaligned ( gi|20 ): TTCAGATTAGGTCTAGTGATGTTGAGGTCTGCAGGTCTTAGTAAAGTTATAAGCCACTGGTCCG
Unaligned ( gi|22 ): GAAATACTTTCAGAAATTACGTTACGAAAATGAAGTTAGTCAGG