lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 444444444444 222 4444 1 22 22222 22222222222 222222222222222222 66666666 77777777777 22222222 11 2222222222222222222222222222222222222222222222222222222222222222222 11 111 22222222222222222 1 1111 222 222222222 2222 1 444444444444444444444444444444444444444 22222222222222222222 1 11 5555555555555555 1 11 111 333333333 99999999999999999999999999999999999999999999 11 111 111111 11 1111 1111 1 1 111 11 66666666666666666666666 333333 111 11 1111 2222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 2222222 1 333333 2222 5555555555 1 1 11 22 333 4444 2222 1
lowQualScore : 0 7 999999999999 1 777 1111 3 7 7 0 6 6 2 7 77 8888 99 66666 6 6 33333333333 6 666 888888888888888888 2 8 11111111 2 33333333333 77 66666666 6 88888 22 0000000000000000000000000000000000000000000000000000000000000000000 11 3 2 6 6 000 6 66666666666666666 1 0 5 3333 5 777 77 3 000000000 5 666 888 5 0 66 3333 5 66 8 5 1 3 3 5 5 5 55 99 8 0 444444444444444444444444444444444444444 9 44444444444444444444 9 6 6 00 5555555555555555 0 6 33 2 1 444 8 222222222 5 55555555555555555555555555555555555555555555 6 6 88 666 6 6 777777 99 6 6 0000 2222 6 0 1 6 99 111 6 11 5 11111111111111111111111 99 6 999999 0 6 6 3 2 6 6 6 3 444 00 6 1111 7777 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 22 3 77 3333333 0 3 0 3 111111 7 5555 1 7777777777 3 3 6 3 88 77 66 4 555 2 3 2222 2 6666 5 3
lowQualScore : . . ............ . ... .... . . . . . . . . .. .... .. ..... . . ........... . ... .................. . . ........ . ........... .. ........ . ..... .. ................................................................... .. . . . . ... . ................. . . . .... . ... .. . ......... . ... ... . . .. .... . .. . . . . . . . . .. .. . . ....................................... . .................... . . . .. ................ . . .. . . ... . ......... . ............................................ . . .. ... . . ...... .. . . .... .... . . . . .. ... . .. . ....................... .. . ...... . . . . . . . . . ... .. . .... .... ................................................................................................................................ . .. . .. ....... . . . . ...... . .... . .......... . . . . .. .. .. . ... . . .... . .... . .
lowQualScore : 7 7 333333333333 0 000 7777 7 3 7 7 0 0 5 0 55 8888 55 00000 7 7 55555555555 7 000 222222222222222222 8 2 66666666 5 77777777777 99 99999999 7 55555 88 9999999999999999999999999999999999999999999999999999999999999999999 77 3 5 7 7 777 7 88888888888888888 0 0 7 6666 3 111 99 9 999999999 7 444 888 1 2 99 6666 0 99 5 0 5 4 5 0 7 7 77 22 0 8 888888888888888888888888888888888888888 0 00000000000000000000 5 7 7 88 7777777777777777 8 4 66 2 4 000 0 888888888 2 88888888888888888888888888888888888888888888 7 7 33 777 7 7 222222 33 7 7 2222 5555 7 5 0 7 22 777 7 33 3 33333333333333333333333 22 7 000000 7 7 3 2 5 7 7 4 8 000 88 8 6666 2222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 00 2 88 5555555 0 2 8 0 555555 0 3333 0 7777777777 3 3 7 7 33 55 55 0 000 5 0 5555 5 0000 5 0
consensus : ACGTNAAGGTC-----GT----ATAGGTCGTGGTATAGAAAGAGT-AAANAATAGAATANGCCGAGAAAGAAAAATNAACCGGAAACAATAAACAAGA---NAA-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--A-ATATACATGTAT-TG----TAC-TACATACAT--AT--A---CAAATTA-TATT-T-A-GTATCGGTTT-------AG-AGNG----AAAATTTTACAG-T--AGGATTTTAA-GCAAAACGCTTTG---------TTG-TTGCAATGTAAGCATGTACTGC-TTCAAATAT-CT--TAATG-TTGACATTA-AGTG----TATAATTAGGAT-TC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGAT-GTTCATTACTA---GTAATATTCTGTATAGAT--TGAAN---A-AG--TGTANTTCT-AGAAGCTGCATATTT-AGAACAGAC-AAAAAA-GTAATGATACGCA--TCTTCGAT-AAAATCAG--TANCAA-------------------AAT-CAG-ACGGTTCCCACACNTTGGA-A-TATCT-GAT-AAATATTGAT-AAAAAGATCTGAATTAAGA-TTGC-TAGCAT--CATTTC--NT--ATCTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGAA-AGAG-TTCATTTCCT-----------------TTTTTT-T-----------------A-CAAAA-ATAA-GAATTTAGGA--CTCTTT--AAA-GATG-A--AAT-TCCA-GAAGC-ATT-T--TNAA-T-AT-AGTCTGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCA---------------------NATAT--GA-TGTTG-TTT--CTAATA-TGAGGAATTTTGAACTG-TAAAGTA-CCAGTTCGAAGATTGNAAGAATGAG---TTGGTGGACGA-TAGGGTTTTA--TCAAAATC-GTACAAATA------TTGAG-GTGAATAGCCAT-AATT-ATAATTTTAAAAAACAA-CAATAA------------CTTGT---TTTCCTTG--TTTGTAA--GATCCCATN-CTA------T-G--------T--G-AGCG-AGAA-GAATTACATCTTAAACC--TGT-TATTATCNTGG-----CTGCTTCAACTTGAACGCCTTCTAAT--AATTTGGAGT------TCTTTTTCTGAGCAA-TTAT-CCCAAACAACATCCGAGTA--TTCAAGTACAGGTCTTTAACAAATGCCNNATNTATCTCAATCAGTNTTTCNCTATTANTTCACCTNNTACTTCAGCATTCNAAGAATATTT
Reference ( gi|1 ) : ACGTAAAGGTC-----AT----GTAAGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATAAACAAGA---CAA-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----AAACA-T-----TACACACACACACACTAT-TAGATATACATGTAT-TG---TTAT-TACATACAT--AT--A---CAAATTA-TATT-T-A-GTATCGGTTT-------AG-AAC-----AAAATTTTACAGCT--AGGATTTTAA-GCAAAATGCTTTT---------TTA-TTGCAATGCAAGCATGTACTGC-TTCAAATAT-CT--TAATG-TTGACATTA-AGTG----TATAATTAAGATATC-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGAT-GTTTATTACTA---GTAATACTCTGTATAGAT--TGAAT---A-AG--TGTACTTCT-AAAAGCTGCTTATTT-AGAACAGAT-AAAAAA-GTAATGATACACA--TCTTCAAT-AAAATCAG--TACCAAG--CTA-AT-TAGATT--GAAT-CAGAATGGTTCACACACATAGGA-A-TATCT-GAT-AAATATTGATTAAAAAGATCTGAATTAAGA-TTGC-CAGCAT--CATTTT--AT--ATCTGACAATGTATTTTATTATACAAATGTTC---TCCAAAA-T--A-TGAG-TTCATTTCCT-----------------TTTTT--------------------A-CAAAA-ATAA-GAATTTAGGA--CTCTTT--AAA-GATG-A--ATT-TCCT-GAAGC-ATT-T--TTAA-T-AT-AGTCCGGAA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGTTTTCCA---------------------AGTAT--GA-TGTTGTTTT--CCAATA-TGAGGGATTTTGAATTG-TAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TTGGTGGACGG-TAGGATTTCA--TCAAAATT-GTACAAATACCAACTTTGAAAGTGAATAGCTAT-AATTCATAATTTTAAAAAACAG-CAACAA------------GTTGT---TCTCCTTG--TTTGTAAC-GATCCCATC-CTA------T----------T--G-AGCG-AGAG-GAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTAAT--AATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTTGTGCTTGATAGTTGTGACAGTGTTTTCA
gi|11 : ACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGT-AAATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT-AACGAGG---GGA-AAGATAT-----------AGAGAA-AATCAAAACAT-----A---A-T-----TATATACA-AGACA------AGATATAGACGTATGTGAA-CTA--TACATATAT--ATTAA---CATATT
gi|17 : aACATCAAGGTC-----AT----ATAGGTCGTGGTATAGAAAGAGT-AAACAATAGAATAAGCTGAGAAAGAAAAATCAACC--AAAAACTAA--AAG------A-AAGA-A-AG----A--AAAAAAAA-AATCCAAAAA------AAACC-A-----TACA
gi|21 : ACATTAAGGTC-----GT----ATAGGTCATGGTATAGAAAGAGTTTAGAAA-AGAATGGGTTGAAAAAGAAAAtg
gi|6 : aACAGAAAGAAAGA---AAA-ATAA-ATAA----A--CAAAAGAA-AACATGAACAT-----ATACA-T------ACATACACACACA-TAT----GTATACAT----------------ACATAGAT--AT--T-----AATTA-CATA-T-A-GTACCGGTTT-------AGGAAG-----GAAAT--------------AATTTAT-ACAAAACGCTTTG---------TTG-TTGCAATGTAAGCATGTACTGC-TTCAAATAT-CTAATCATG-TTAACATTA-AGTGCATGTATAATTGGGATGTC-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGAT-ATTTATTACCA---GTAATAATCTGTATAGAT--TGGAA---A-AG--TGTAAATCT-AAAAGTTGCATATCT-AGAACAGAC-AAA-----TAATGATACGCA--TCTTCAAT-AAAATCAG--TAACA-------------------------------GTTCCCACA------A-A----CT-GA--AGATTCTGAT---AAACATCTGAATTAAGG-TTGC-TGGCAT--TAT
gi|2 : cataaaggtaatatacaatagagcataatgtgcATAAACAAAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAACAT-----AAACAGT-----TACACACACACACACTATATA-ATATACATGTAT-TG---T-AT-TACATACAT--AT--ATAACAAATTAATATT-TCA-GTATTCGTCTTTTATTGAT-AGCG----AAAATTTTACAG-T--AGGATTTTAA-GCAAAATGCTTTT---------TTACTTGCAATGCAAGCATGTACTGCCTTCAAATATTCT--TAATG-TTGACATTACAGTG----TATAATTAAGATATCGCATA----AACA---TAAC--TTAAGT-------T-CAGGCTTGAT-GTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG--TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATATATAGACTTGGAATTCAGAATGGTTCACACAATTAGGA-AATATCTTGAT-AAATATTGAT-AAAAAGATCTGAATTAAGAATTGC-CAGCATGCCATTTTTTATTTATCTGACA-TGTATTTTATTATACAAATGTTCATTTCCAAAAAT--A-TGAGCTTCATTTCCC-----------------TTTTTTAC-----------------A-CAAAACATAAAGAACTTAGGA--CTCTTT--AAA-GATGGA--ATTGTCCT-GAAGCCATT-TATTCAA-T--T-AGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCA---------------------AGTAT--GA-TGTTGTTTTTCCCAATACTGAGGGATTTTGAATTGTTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCTTAGTGGACGGTTAGGATTTCA--TCAAAA-T-GTACAAATACCAAC-TTGAAAGTGAATAGCTAT-AATT
gi|3 : c---CAA-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATACATTGTACAGACA-T------GCATACAGACAGAC-----AGACAGACATTTAT-TAAATTTAG-TAC-TAAAT--AG--G---CAAAATA-TTTT-T-ATGTATTATCTT-------A-----------ATATTTTAC------------------------GTTTTG---------TTG-CTGCAATGTAATCATGCACTGA-TTCAAATTT-CT--GAATA-TTGATATTT-AGTT----CATAGCTAGGACTTC-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAA-AGTAATTGCTA---ATGATATTTTGTATA--------AC---A-TG--TGT--TTAT-AGAAG-TGAATTTTA-AGAACAGAT-TAAAAATGTAATGACATGCA--TCTCCGAT-AA---------------------------------AAT-CAGTACAATTCCCACACATTGGA-G-TA------------ATT--TTAAAAA-AT-TGAATTATGA-TTGC-TAGCAT------------------GACAATGTATC-----ATACCGACGTTC---TCCAAAA-TGAA-AGAC-TTTATTTCCT-----------------TTTTTTTTTTTTTTTTTTCTTCTTTA-CAAAA-ATGA-GAATTTTGGA--CTCTTTTGAAT-GAAG-A--AAT-TCTA-AAAGT-ATT-T--TTAT-T-AT-ATTCTGGCA-AGTTGTTCCATT--GTTT---GAGAGTG-GAGGGAAAAA--GCTTTCCA---------------------TATAT--GA-TGTT-------CTAATA-TGAGGAATTTTAAACTG-TAAAGTA-CCAGTTTGAGGATCGAAATAATGAG---TTGGTGGACGA-TATGGTTCTA--TCAAA-TC-GTATAAATG------TTGAG-GTGAATAGTCATTAATT----ATTCTAAATA-----CAATAA------------CTTATGAATTTTTCTA--CTTGT--------------CT------------------------GTA-AGAA-GA-TCCCATCCTA-------GT-T--TACCACAGAGAAATTGCATCATCTTAAA--CCTGTTA-TCCAATTTGAAGT---------TTTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTTtcaatatcccataactattttgtagcgagagagaattacatcttaaatccttgttattattatgctgcttcaacttgaatgccttctaataattaggagtctactgtctttttctgagcaatttatccccacacaacatccgagtattttcaagtacaagtctttaataaatgcctcatttatcttaagtttttcacagttcacctattactcagcattcaaagaatatt
gi|14 : A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTT-----ATACA-TACATGTACATACATACACA-TGT----ATATACATGTAC-AC---ATACATACATACATAGAT--A---TAAATTA-TGTT-T-A-GTAtttaaaacttattgtagccttttc
gi|9 : tgaaggttatatacaatagaatatgatgtagagag-TATATATACATGTAC--------ACATACATACAT--AA--AAA-TAAATTA-TATT-G-A-GTAT----TT-------AG-TACCATTAAAAATATTAAA-----AGG----TAACGCTAAATG--------------TTG-CTGCAATGTAAGCATGT-----------------C--TAAGA-TTGGAATT----TG----CATA--TAA-------CA---------A---TAAT--TCAAGT-------T-CAGG-TTGAT-AGTCGTTACTG---GTAGTATTTTGTATAGTT--TGAAA---A-AG--TGTAATTCT-AGAAGCTGCATATTT-AGAACAGTT-GAAAAA-GTAATCATA
gi|4 : tatatatagtaACATACAT--AC--A---TAAATAA-TATCAT-G-GTACCAGTTT-------AG-GGGGG---AAAATT--ACAGTTGTAGGATCTTAA-ACAAAACGCTTTG---------TTG-TTGCAATGTAAGCATGTACTGC-TTCAAATAT-CT--CAATG-TTGACATTA-AGT------------AGGATATC-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGAT-ATCTATTATTA---GTAATATTCTGTATAGAC--TGAAA---A-AG--TGTAGTTCT-AGAAGTTGCGTATTT-AGAATAGAC-AAAAAA-GTAATGATATGCA--TCTTCAAT-AAAACCAG--TGC
gi|5 : cGGATTT-AA-GCAAA---CCTTTGTTGGCAACTTC-GTGCAATGTAAGCAT-TA--GC-TTCAAATAC-GT--GAATGCCCAACGTTA---TG----TAT--T--GGAT-TC-CATAC---AA-A---TAAT--TCAAAT-------C-CAGG-TTAATAGTCT-TTACTA---GTAATATTATGTATAGAT--TGAA----A-AGGTTGTATTTCT-AAATGC-GCATATTT-AGAAC-GAT-AAAAAA-TT-ATGATATGCGATTCTTCGAT-AAAATCAG--TTACAA-------------------------------TTCCCACTCTTTGGATA-TATCT-GAT-AAACATTGAT--AAAAGATCTTAA--AAGA-Tagttcccgcaactttgattaaaaagacctgaattaagattgctagcattattgcttacctggcaatgtattatattataccgaagttccccaaattgaaagagttaatttccttttttttcaaaaataagaatttaggagactctttaaaagatgaaattccagaagaatttttaaatattagtctggcaaggtgttccattgtttgacattggagggaaaaagctttccaagtataatgttgttctaatatgaggaagtaccagttcgaaaattgtaagaatgacttgatggaggatgggttctatcaaatcatacaactattgaggtgagtagccattaataattaaaaaaacaaacaataacgacttatatgaattgttttccttgtttgtaagagatcccatcctatcatacaactttgagcgagaagaattgcatcttaaacctgttattattctggctgcttcaacttgaatgtcttctaaaaatttagatttttttctgagcaattgtcccaaacaacatctgagtattcaagtattgtctacaactgcatata
gi|16 : C-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTT-GATCATAGCCATTTGTAATTTCCAGTATGGCT--TGTAT---C-AA--TGTATTTCT-ACAATATGTATACTT-TGGACAAAC-AAAAAA-GTAATGATAAGCA--TTTCCAAgatagtaaatccttagcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|20 : ggactaTCATTACTA---GTAATATTCTATATATAT--TGAA----A-AG--TGTATTTCT-AGAAACTGCATGTGC-AGAAa
gi|7 : gttacACATATTGGA-G-TACCT-GATCAAATAT-GACGATATATATCTGCTTTCAAG-TTACGTGACCT--C-TTTC--GT--TGTTGGCAATGCATTATATTAAATCGATAATT---TC---AA-T--AATTAC-TTCTTTTTTT-----------------TTTTTTTTT----------------A-CAGAA-ATAG-GAATATAA-A--CTCTT-----A-CATG-AGGATA-TCCAAGAAGC-ATT-T--T-AA-G-GT-CATCAGGCA-GGCTGTCCCATT--GCTT---AACAGTG-GA---AAGAAGGGATCTTTA---------------------TATATGGGA-TGACG--TT--CTAATT-CGAGGAAGTTTGAATTG-AATGGTA-TTAGTa
gi|4 : tgattacggccttggtcaatacaatttgtTTGATTAAAAAGACCTGAATTAAGA-TTGC-TAGCAT--TATTGC--TT--ACCTGGCAATGTATTATATTATACCGAAGTTC---CCCAAAT-TGAA-AGAG-TTAATTTCCT-----------------TTTTT--------------------TTCAAAA-ATAA-GAATTTAGGAGACTCTTT--AAAAGATG-A--AAT-TCCA-GAAGA-ATT-T--TTAAAT-ATTAGTCTGGCA-AGGTGTTCCATT--GTTT---GACATTG-GAGGGAAAAA--GCTTTCCA---------------------AGTAT--AA-TGTTGTT----CTAATA-TGAGG---------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---TTGATGGAGGA-TGGG-TTCTA--TCAAA-TC-ATACAACTA------TTGAG-GTGAGTAGCCAT----TAATAATTA-AAAAAACAAACAATAACGACTTATATGAATTGT---TTTCCTTG--TTTGTAAGAGATCCCATC-CTA------TCATACAACTTT--G-AGCG-AGAA-GAATTGCATCTTAAACC--TGT-TATTATTCTGG-----CTGCTTCAACTTGAATGTCTTCTAAA--AATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTA
gi|8 : cacatacatacataaataatatcatggtaccagtttaggggggaaaattacagttgtaggatcttaaacaaaacgctttgttgttgcaatgtaagcatgtactgcttcaaatatctcaatgttgacattaagtaggatatccatataacaataattcgagttcaggttgatatctattattagtaatattctgtatagactgaaaaagtgtagttctagaagttgcgtatttagaatagacaaaaaagtaatgatatgcatcttcaataaaaccagtgcagttcccgcaactT--ATCTGACAATGCATTATATTATTCTGACGATC---TACAAAA-T--A-AAAGATT--TTTCCTATTTTAAAAAAAATTATTTTTT--------------------A-CAAAA-ATAA-GAATTTAGGAGACTCTTA--AAA-GATG-A--AAT-TCCA-GAAGC-ATT-T--TAAA-T-GT-AGTATAGCA-AGTTGTTCTATT--GTTT---GACAGTG-GAGGG--ATAAAGCTTTCCA---------------------TATAT--GA-TGTTG--GC--CTAATA-TGAGGAATTTTAAACTG-TAAGGTA-CCAGTTCAAAGATTGTATATGTAAG---TTGGTGGACGA-TAGGGTTTTA--TCAttgtctacaactgcatata
gi|5 : gtCATTTTGT-----------------TTTT---------------------------A-ATAA-GAGTT-AGGA--CTCTTG--AAA-GATG-AC-AAT-TCCA-G-AGC-ATTAT--TGAA-TAAT-AGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGCAATGTAACATTACAATAT--AATTATTGATCT---CAATA-TTA-GGATCTTG-GCTG-TAAAGTCTCCAGTTCGAAGATTTAAAGA--------TTGGTGGATCA-AAAGATCT-ATTTTAAAATTCATACAAATA-----TTT----GTGAATGGC-----ATT-ATA--TTTAAAAGAAAA-CAAAAA------------t
gi|15 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaGCGAGTGGCCA---ATTTATTATTTTCACGAACAA-TAACTA------------CTT----------TTGAATTTG-AA--GATCC-ATT-CTAATATTATAGACA-----T--G-AACGTAGAA-GAAT-ACTTCTTAAGCC---GTATATTAGCCTAA-----CAGCTTCTACTTGAACGTCccaa
gi|2 : tattgatATCCCATAACTA------T----------TTTGTAGCG-AGAGAGAATTACATCTTAAATCCTTGT-TATTATTATG------CTGCTTCAACTTGAATGCCTTCTAAT--AATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTGTATTTAAAAACTCTTGTTTCTTAGTTGACAAAGAATATTATAATGATTTCCAAAGTGATAAAGTCCCATACTTTTTTTTTTTACCGAAATAGGAATGTAAAAGACTCTTGAATAGGGATATCCCATAAGCACTTTAATGAAAATTTCTATATAGGTTAAAGTTCAAATTTGAGGAAGTTTGAATTGAACGTTAGTAAT
Unaligned ( gi|12 ): CATAAAGGTCATATACAATAAAATATGATGTGCACAGAAAGAAATAAACAAATGAAAATATGAACACACACATATGTATACATGTACACTTACATAAATAGTACCGGTTTAGGAATGAAAAAAAATTAAACAAAAAGTTGCAATGTA
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|19 ): AGGTCATATCATTAGAATAATATGTAGTGGGGAAAAAATCAAAAGTATACATACGTACATACACACATATACATATATATACACAT
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 11 11 1 111111 222 22222222222 11111 22222222 3333333333 3333333333333 111111111 555555555555555555555555555555555555 222222222 111 111 11111 2 1 111111111 1111 888888888888888888888888888888888888888 111111111 111111 2222222222222 111 111 2222 11111111 3333333333333333333 111 11 11 1111 111111 5555555555555555555555555555 111 333333 1 111 111 11111 0000000000000000000000000000000000000000000000000000000000000000000000 1 111 11 11111 555555 1 1 11 33 333 4444
lowQualScore : 1 777 888888 2 33 1 1 1 55 0 6 22 999999 1 111 5 5 11111111111 5 111 44444 6 22222222 5 7777777777 3 1111111111111 444444444 3 5 5 5 5 999999999999999999999999999999999999 55 1 77 333 0 333333333 5 000 0 5 5 111 5 77 66666 3 2 5 0 5 0 888 00 66 66 777777777 5 3 777 66 3333 4 4 2 4 1 4 5 5 0 77 1 5 222222222222222222222222222222222222222 44 222222222 77 1 999999 5 4 5 5 1111111111111 3 2 1 7 1 000 000 2 66 2222 5 88888888 7777777777777777777 5 0 5 5 66 66 66 555 5 3 5 66 5 5 11 5 33 6 5 77 1111 5 5 0 1 111111 8888888888888888888888888888 5 5 9 1 0 5 5 1 1 111 6 6 88 3 555555 3 3 3 333 6 333 3 1 22222 0 5555555555555555555555555555555555555555555555555555555555555555555555 6 0 0 444 11 0 8 0 33333 1 55 1 3 77 2 777777 6 0 0 3 0 33 77 00 22 1 0 777 1 1 4444 1 7777 7 1
lowQualScore : . ... ...... . .. . . . .. . . .. ...... . ... . . ........... . ... ..... . ........ . .......... . ............. ......... . . . . . .................................... .. . .. ... . ......... . ... . . . ... . .. ..... . . . . . . ... .. .. .. ......... . . ... .. .... . . . . . . . . . .. . . ....................................... .. ......... .. . ...... . . . . ............. . . . . . ... ... . .. .... . ........ ................... . . . . .. .. .. ... . . . .. . . .. . .. . . .. .... . . . . ...... ............................ . . . . . . . . . ... . . .. . ...... . . . ... . ... . . ..... . ...................................................................... . . . ... .. . . . ..... . .. . . .. . ...... . . . . . .. .. .. .. . . ... . . .... . .... . .
lowQualScore : 0 555 888888 0 55 0 0 0 77 6 7 77 222222 0 444 7 7 77777777777 7 111 33333 6 99999999 2 0000000000 0 1111111111111 000000000 6 0 0 7 7 000000000000000000000000000000000000 00 4 00 999 7 111111111 7 000 7 7 7 333 7 11 44444 6 3 0 0 0 0 888 44 99 99 111111111 0 2 888 11 1111 4 4 6 4 9 4 0 0 4 99 4 7 333333333333333333333333333333333333333 00 666666666 11 4 999999 7 3 7 7 4444444444444 4 3 7 6 9 000 333 1 44 5555 0 11111111 0000000000000000000 0 1 0 0 99 99 99 444 0 4 0 99 0 0 99 9 77 0 7 99 4444 7 0 1 0 000000 6666666666666666666666666666 7 7 3 4 4 7 7 0 7 777 7 7 88 2 888888 3 7 7 000 7 888 2 8 88888 3 6666666666666666666666666666666666666666666666666666666666666666666666 0 8 8 000 00 8 0 8 00000 0 44 4 5 88 5 555555 5 0 0 0 2 88 55 88 00 0 7 333 0 0 7777 0 7777 3 0
consensus : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGT-NAACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---ACAAATT-ATATT-T-A-GTATCGGTTT-------AGAGNG-AAAATTTTACAG-T---AGGATTTTAAGCAAAACGCTTTGTTG------T--TGCAATGTAA-GC---ATGTACTG-CTTCAAATA-TCT--TAATGTT-GACATTA-AGTG----TATAATTAGGA-TAT-C-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCAG--TA-CAA---------------------------A-CGGTTCCCACANATTGG-A-ATATC-TGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-ATTGC-TAGCAT--CATTT----CTTATCTGACAATGTATTATATTATACCGACGTTC---TCCAAAATGA-ANGAG-TTC----AT-TTC--------CTTTTTT------------------T-TACAAAA-AT-AAGAATTT--AG--GA--CTCTTN--AA-AGATGA-AAT--TCCAGAAG-CA-TT--TTNAATA-TAGTCCGGCA-AGTTGTTCCATTG--TTT---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATG----------------TTG-TT--T---CT-AATA-TGAGGAATTTTGAACTG-TAAAGTA-CCAGTTCGAAGATTGNAAGAATGAG---TTGGTGGACGA-TAGGGTTT-TATCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAAAAC-AACAATAAC------------TTG-----TTTTC--CTTG--TTTGT---A--A-GATCCCATCCTA--AT---A--TNTGAGCG-AGAAGAATTA---CATCTTAAA--CCTGT-TATTATTNTGGCTGCTTCAACTTGAATGCCTTCTAATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTCT-TAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
Reference ( family-1438 ) : ACGTNAAGGTC---GTATA------GGTCGTGGTATAGAAAGAGT-AAANAATAGAATANGCCGAGAAAGAAAAATNAACCGGAAACAATA-AACA------AGANA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--A--ATATACATGTAT-TG----T-AC-TACATACAT--AT---ACAAATT-ATATT-T-A-GTATCGGTTT-------AGAGNG-AAAATTTTACAG-T---AGGATTTTAAGCAAAACGCTTTGTTG------T--TGCAATGTAA-GC---ATGTACTG-CTTCAAATA-TCT--TAATGTT-GACATTA-AGTG----TATAATTAGGA-T-T-C-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATGTTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-CAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCAG--TANCAA-------------------AA-TCAG-A-CGGTTCCCACACNTTGG-A-ATATC-TGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-ATTGC-TAGCAT--CATTT----CNTATCTGACAATGTATTATATTATACCGACGTTC---TCCAAAATGA-AAGAG-TTC----AT-TTC--------CTTTTTT------------------T-TACAAAA-AT-AAGAATTT--AG--GA--CTCTTT--AA-AGATGA-AAT--TCCAGAAG-CA-TT--TTNAATA-TAGTCTGGCA-AGTTGTTCCATTG--TTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANATA---T--GATG----------------TTG-TT--T---CT-AATA-TGAGGAATTTTGAACTG-TAAAGTA-CCAGTTCGAAGATTGNAAGAATGAG---TTGGTGGACGA-TAGGGTTT-TATCAAAA-TCGTACAAATA------TTG-AGGTGAATAGCCAT-AATT-ATAATTTTAAAAAAC-AACAATAAC------------TTG-----TTTTC--CTTG--TTTGT---A--A-GATCCCATNCTA----------TGTGAGCG-AGAAGAATTA---CATCTTAAA--CCTGT-TATTATCNTGGCTGCTTCAACTTGAACGCCTTCTAATAATTTGGAGT------TCTTTTTCTGAGCAA-TTAT-CCCAAACAACATCCGAGTA--TTCAAGTACAGGTCTTTAACAAATGCCNNATNTATCTCAATCAGTNTTTCNCTATTANTTCACCTNNTACTTCAGCATTCNAAGAATATTT
gi|1 : ACGTAAAGGTC---ATGTA------AGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATA-AACA------AGACA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----AAACA-T-----TACACACACACACACTATTAG--ATATACATGTAT-TG----TTAT-TACATACAT--AT---ACAAATT-ATATT-T-A-GTATCGGTTT-------AGAAC--AAAATTTTACAGCT---AGGATTTTAAGCAAAATGCTTTTTTA------T--TGCAATGCAA-GC---ATGTACTG-CTTCAAATA-TCT--TAATGTT-GACATTA-AGTG----TATAATTAAGA-TAT-C-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGATGTTTATTACTA---GTAATACTCTGTATAG--ATTGAA---TA-AG-TGTACTTC-TAAAAGCTGCTTA-TTTAGAACAGA-TAAAAAA-GTAATGATACACA--TCTTCAA-TAAAATCAG--TACCAAGCTAATTAGATTG------AA-TCAG-AATGGTTCACACACATAGG-A-ATATC-TGAT-AAATATTGATTAAAA-AGATCTGAATTAAG-ATTGC-CAGCAT--CATTT----TATATCTGACAATGTATTTTATTATACAAATGTTC---TCCAAAAT---ATGAG-TTC----AT-TTC--------CTTTT--------------------T-TACAAAA-AT-AAGAATTT--AG--GA--CTCTTT--AA-AGATGA-ATT--TCCTGAAG-CA-TT--TTTAATA-TAGTCCGGAA-AGTTGTTCCATTG--TTT---GACAGTG-GAGGGAAAAAAAGTTTTCCAAGTA---T--GATG----------------TTGTTT--T---CC-AATA-TGAGGGATTTTGAATTG-TAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TTGGTGGACGG-TAGGATTT-CATCAAAA-TTGTACAAATACCAACTTTGAAAGTGAATAGCTAT-AATTCATAATTTTAAAAAAC-AGCAACAAG------------TTG-----TTCTC--CTTG--TTTGT---A--ACGATCCCATCCTA----------T-TGAGCG-AGAGGAATTA---CATCTTAAA--CCTGT-TATTATTATGGCTGCTTCAACTTGAATGCCTTCTAATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|10 : TTT----CTTAGTTGACAAAG-A--ATATTATAATGA---TT---TCCAAAGTGA-TAAAG-TCCC---ATACTT--------TTTTTTT------------------T-TACCGAA-AT-AGGAATGTAAAA--GA--CTCTTG--AATAGG-GA-TAT--CCCATAAG-CA-CT--TTAAgtgcttgatagttgtgacagtgttttca
gi|11 : ctgtatttaaaaactcttgACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGT-AAATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT--AACG------AGGGG---A-AAGATAT-----------AGAGAA-AATCAAAACAT-----A---A-T-----TATATACA-AGACA--A---G--ATATAGACGTATGTG----A-AC-TATACATAT--AT---ATTAA-C-ATATT-tgaaaatttctatataggttaaagttcaaatttgaggaagtttgaattgaacgttagtaat
gi|14 : aACAATAGAATATGATGTAGAGAG--A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTT-----ATACA-TACATGTACATACATACACA-TGT-----ATATACATGTACACA----T-ACATACATACATAGAT---ATAAATT-ATGTT-T-A-GTA
gi|15 : tgaaggttatatTA------TTG-ATGCGAGTGGCCA--ATTT-ATTATTTTCACGAAC-AATAACTAC------------TT--------------TTGAATTTG----A--A-GATCC-ATTCTAATATTATAGACATGAACGTAGAAGAAT-A---CTTCTTAAG--CC-GTATATTAGCCTAACAGCTTCTACTTGAACGTC
gi|16 : GGA-C-TAC-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTTGATCATAGCCATTTGTAATTTCCAGTATGG--CTTGTA---TC-AA-TGTATTTC-TACAATATGTATA-CTTTGGACAAA-CAAAAAA-GTAATGATAAGCA--TTTCCAA-
gi|17 : ACATCAAGGTC---ATATA------GGTCGTGGTATAGAAAGAGT-AAACAATAGAATAAGCTGAGAAAGAAAAATCAACCAAAAAC--TA-A--A------AGAAAG--A-AAGA-A-----------AAAAAAA-AATCCAAAAA------AAAC----------CATACAa
gi|2 : ATA-AACA------AAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAACAT-----AAACAGT-----TACACACACACACACTAT--ATAATATACATGTAT-TG----T-AT-TACATACAT--ATATAACAAATTAATATT-TCA-GTATTCGTCTTTTATTGATAGCG-AAAATTTTACAG-T---AGGATTTTAAGCAAAATGCTTTTTTAC-----T--TGCAATGCAA-GC---ATGTACTGCCTTCAAATATTCT--TAATGTT-GACATTACAGTG----TATAATTAAGA-TAT-CGCATA----AAC-A--TAAC--TTAAGT-------T-CAGGCTTGATGTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG-TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATATATAGACTTGGAATTCAGAA-TGGTTCACACAATTAGGAA-ATATCTTGAT-AAATATTGAT-AAAA-AGATCTGAATTAAGAATTGC-CAGCATGCCATTTTTTATTTATCTGAC-ATGTATTTTATTATACAAATGTTCATTTCCAAAA--ATATGAGCTTC----AT-TTC--------CCTTTTT------------------TACACAAAACATAAAGAACTT--AG--GA--CTCTTT--AA-AGATGG-AATTGTCCTGAAGCCA-TTTATTCAAT--TAGTCCGGAACAGTTGTTCCATTG--TTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATG----------------TTG-TT--TTTCCC-AATACTGAGGGATTTTGAATTGTTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCTTAGTGGACGGTTAGGATTT-CATCAAAA-T-GTACAAATACCAAC-TTGAAAGTGAATAGCTAT-AATT-TCAATATC----------CCATAAC-------------TA-----T------------TTTGT---A---------------------------GCGAG---AG-AGAATTA---CATCTTAAATCCTTGT-TATTATTAT-GCTGCTTCAACTTGAATGCCTTCTAATAATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATTtg
gi|20 : cTCATTACTA---GTAATATTCTATATAT--ATTGAA----A-AG-TGTATTTC-TAGAAACTGCATG-TGCAGAA
gi|21 : gttacACATTAAGGTC---GTATA------GGTCATGGTATAGAAAGAGT-TTAGAAAAGAATGGGTTGAAAAAGAAAAa
gi|3 : aA---A-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATACATTGTACAGACA-T------GCATACAGACAGAC-A---G--ACAGACATTTAT-TAAATTT-AG-TAC-TAAAT--AG---GCAAAAT-ATTTT-T-ATGTATT----------------------ATCTTA--A-T---A---TTTTA-------CGTTTTGTTG------C--TGCAATGTAA-TC---ATGCACTG-ATTCAAATT-TCT--GAATATT-GATATTT-AGTT----CATAGCTAGGACT-T-C-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAAAGTAATTGCTA---ATGATATTTTGTATA--------A---CA-TG-TGT--TTA-TAGAAG-TGAATT-TTAAGAACAGA-TTAAAAATGTAATGACATGCA--TCTCCGA-TAAAATCAG--TA-CAA--------------------------------TTCCCACACATTGG-A-GTA----------AT-TT--T-AAAA-A-AT-TGAATTATG-ATTGC-TAGCAT------------------GACAATGTATCATA-----CCGACGTTC---TCCAAAATGA-AAGAC-TTT----AT-TTC--------CTTTTTTTTTTTTTTTTTTTCTTCTT-TACAAAA-AT-GAGAATTT--TG--GA--CTCTTTTGAA-TGAAGA-AAT--TCTAAAAG-TA-TT--TTTATTA-TATTCTGGCA-AGTTGTTCCATTG--TTT---GAGAGTG-GAGGGAAAAA--GCTTTCCATATA---T--GATG----------------TT----------CT-AATA-TGAGGAATTTTAAACTG-TAAAGTA-CCAGTTTGAGGATCGAAATAATGAG---TTGGTGGACGA-TATGGTTC-TATCAAA--TCGTATAAATG------TTG-AGGTGAATAGTCATTAATT-AT---TCTAAATA-----CAATAAC------------TTATGAATTTTTCTACTTG--TCTGTAAGA--A-GATCCCATCCTA----------GTTTACCACAGAGAAATTGCATCATCTTAAA--CCTGT-TA-------------TCCAATTTGA-------------------AGT------T---TTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTT
gi|4 : cACATACAT--AC---ATAAATA-ATATCAT-G-GTACCAGTTT-------AGGGGGGAAAATT--ACAG-TTGTAGGATCTTAAACAAAACGCTTTGTTG------T--TGCAATGTAA-GC---ATGTACTG-CTTCAAATA-TCT--CAATGTT-GACATTA-AGT------------AGGA-TAT-C-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGATATCTATTATTA---GTAATATTCTGTATAG--ACTGAA---AA-AG-TGTAGTTC-TAGAAGTTGCGTA-TTTAGAATAGA-CAAAAAA-GTAATGATATGCA--TCTTCAA-TAAAACCAG--T--------------------------------G-CAGTTCCCGCAACTT-----------TGAT----------T-AAAA-AGACCTGAATTAAG-ATTGC-TAGCAT--TATTG----CTTACCTGGCAATGTATTATATTATACCGAAGTTC---CCCAAATTGA-AAGAG-TTA----AT-TTC--------CTTTTTT------------------T-T-CAAAA-AT-AAGAATTT--AGGAGA--CTCTTTA-AA-AGATGA-AAT--TCCAGAAG-AATTT--TTAAATATTAGTCTGGCA-AGGTGTTCCATTG--TTT---GACATTG-GAGGG--AAAAAGCTTTCCAAGTA---T--AATG----------------TTG--T--T---CT-AATA-TGAGG---------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---TTGATGGAGGA-T-GGGTTC-TATC-AAA-TCATACAACTA------TTG-AGGTGAGTAGCCAT---TA-ATAA-TTAAAAAAACAAACAATAACGACTTATATGAATTG-----TTTTC--CTTG--TTTGT---AAGA-GATCCCATCCTATCATACAAC-TTTGAGCG-AGAAGAATTG---CATCTTAAA--CCTGT-TATTATTCTGGCTGCTTCAACTTGAATGTCTTCTAAAAATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTAT-TGTCT---ACAACTGCtttaaaacttattgtagccttttc
gi|5 : cGGATTT-AAGCAAA-C-CTTTGTTGGCAACTTCGTGCAATGTAA-GC---AT-TA--G-CTTCAAATA-CGT--GAATGCCCAACGTTA---TG----TAT---T-GGA-T-T-C-CATAC---AA--A--TAAT--TCAAAT-------C-CAGG-TTAATAGTCTTTACTA---GTAATATTATGTATAG--ATTGAA---AA-GGTTGTATTTC-TAAATGC-GCATA-TTTAGAAC-GA-TAAAAAA-TT-ATGATATGCGATTCTTCGA-TAAAATCAG--TTACAA--------------------------------TTCCCACTCTTTGG-ATATATC-TGAT-AAACATTGAT--AAA-AGATCTTAA--AAG-A-TGA-TAGTAatata
gi|5 : C----AT-TTT--------GTTTTT---------------------------A-AT-AAGAGTT---AG--GA--CTCTTG--AA-AGATGACAAT--TCCAGA-G-CA-TTA-TTGAATAATAGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGC--AATGTAACATTACAATATAATTA-TTGAT---CTCAATA-TTAGG-ATCTTG-GCTG-TAAAGTCTCCAGTTCGAAGATTTAAAGA--------TTGGTGGATCA-AAAGATCTATTTTAAAATTCATACAAATA------TT---TGTGAATGGC-----ATT-ATA--TTTAAAAGAA-AACAAAAAC------------aatccttagcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|6 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaACAGAA-AGAA------AGAAA---A-ATAA-ATAA----A--CAAAAGAA-AACATGAACAT-----ATACA-T------ACATACACACACA-TAT--G---TATACAT-----------------ACATAGAT--AT---T--AATT-ACATA-T-A-GTACCGGTTT-------AGGAAG-GAAAT---------------AATTTATACAAAACGCTTTGTTG------T--TGCAATGTAA-GC---ATGTACTG-CTTCAAATA-TCTAATCATGTT-AACATTA-AGTGCATGTATAATTGGGA-TGT-C-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGATATTTATTACCA---GTAATAATCTGTATAG--ATTGGA---AA-AG-TGTAAATC-TAAAAGTTGCATA-TCTAGAACAGA-CAAA-----TAATGATACGCA--TCTTCAA-TAAAATCAG--TAACA--------------------------------GTTCCCACAAACTGA-AGAT-TC-TGAT-AAACAT--------------CTGAATTAAG-GTTGC-TGGCAT--TATcaa
gi|7 : cataaaggtaatatacaatagagcataatgtgcACATATTGG-A-GTACC-TGATCAAATAT-GAC-GATATATATCTGCTTTCAA-GTTACGTGACCT--C-TTT----CGTTGTTGGCAATGCATTATATTAAATCGATAATT---TC---AAT-A-ATTAC-TTCTT--TT-TTT--------TTTTTTT------------------T-TACAGAA-AT-AGGAATAT--A---AA--CTCTTA--CA-TGAGGA-TAT--CCAAGAAG-CA-TT--TT-AAGG-TCATCAGGCA-GGCTGTCCCATTG--CTT---AACAGTG-GA---AAGAAGGGATCTTTATATA---TGGGATG----------------ACG--T--T---CT-AATT-CGAGGAAGTTTGAATTG-AATGGTA-TTAGT
gi|8 : tgattacggccttggtcaatacaatttgtTATCTGACAATGCATTATATTATTCTGACGATC---TACAAAATAA-AAGAT-TTTTCCTAT-TTTAAAAAAAATTATTTT------------------T-TACAAAA-AT-AAGAATTT--AG--GAGACTCTTA--AA-AGATGA-AAT--TCCAGAAG-CA-TT--TTAAATG-TAGTATAGCA-AGTTGTTCTATTG--TTT---GACAGTG-GAGGG--ATAAAGCTTTCCATATA---T--GATG----------------TTG--G--C---CT-AATA-TGAGGAATTTTAAACTG-TAAGGTA-CCAGTTCAAAGATTGTATATGTAAG---TTGGTGGACGA-TAGGGTTT-TATCA
gi|9 : gtTAT--A--GTATATATATACATG----T-AC--ACATACATACAT---A-AAAAT-AAA-T-T-A--TATTG-------------AGT-----ATTT---AG-T---ACCATT---A--AAAA--------TA------T--TAAAAGGTAACGCTAAATGT--TG-CTGCAA------------TGTA-AGCAT----GTC----TAAGATTGGAA-T-T-TGCATAT---AACAA--TAAT--TCAAGT-------T-CAGG-TTGATAGTCGTTACTG---GTAGTATTTTGTATAG--TTTGAA---AA-AG-TGTAATTC-TAGAAGCTGCATA-TTTAGAACAGT-TGAAAAA-GTAATCATAt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATAAAGGTCATATACAATAAAATATGATGTGCACAGAAAGAAATAAACAAATGAAAATATGAACACACACATATGTATACATGTACACTTACATAAATAGTACCGGTTTAGGAATGAAAAAAAATTAAACAAAAAGTTGCAATGTA
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|19 ): AGGTCATATCATTAGAATAATATGTAGTGGGGAAAAAATCAAAAGTATACATACGTACATACACACATATACATATATATACACAT
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 11 11 1 111111 111 1111111 33333333333333333333 3333333333 4444444444444 22222222 666666666666666666666666666666666666 222222222 111 11111 111111111 1111 0000000000000000000000000000000000000000000000000000 111111111 11 11111111 111111 2222222222222 11111 111 11111 1 1111 11111111 44444444444444444444444 11 11 111 1 1 555555555555555555555555555 1 1111111 3333333333333 222222222222 0000000000000000000000000000000000000000000000000000000000000000000000000 111 222222 1 222222 1 1 11 222 222 2222
lowQualScore : 1 777 888888 11 0 1 55 0 6 22 999999 888 5 5 00 4444444 5 2 11111111111111111111 3 0 2222222222 4444444444444 66 11111111 444 4 5 5 88 000000000000000000000000000000000000 1 33 55 999 111111111 6 6 111 8888 5 5 5 77 22222 9999 2 7 5 888 00 66 66 777777777 5 1 777 66 3333 4 4 2 4 1 4 5 5 0 77 1 5 6666666666666666666666666666666666666666666666666666 999999999 00 33333333 22 5 5 55 0 111111 5 2 5 5 5 0000000000000 22222 0 0 3 7 0 777 88888 1 0 3333 4 66666666 66666666666666666666666 8 4 4 22 66 4 777 4 2 4 66666 4 4 4 00 66 5 777 5 0 66 888 0 3 1 888 66 333333333333333333333333333 5 0 8 0 1 777 5 1 0 1111111 666 5 6 9 6666666666666 1 777777777777 9999999 0 5555555555555555555555555555555555555555555555555555555555555555555555555 8 8 0 3 0 666 8 0 1 333333 3 0 1 2 222222 0 0 0 1 0 33 44 888 333 8888 6 7
lowQualScore : . ... ...... .. . . .. . . .. ...... ... . . .. ....... . . .................... . . .......... ............. .. ........ ... . . . .. .................................... . .. .. ... ......... . . ... .... . . . .. ..... .... . . . ... .. .. .. ......... . . ... .. .... . . . . . . . . . .. . . .................................................... ......... .. ........ .. . . .. . ...... . . . . . ............. ..... . . . . . ... ..... . . .... . ........ ....................... . . . .. .. . ... . . . ..... . . . .. .. . ... . . .. ... . . . ... .. ........................... . . . . . ... . . . ....... ... . . . ............. . ............ ....... . ......................................................................... . . . . . ... . . . ...... . . . . ...... . . . . . .. .. ... ... .... . .
lowQualScore : 0 555 888888 00 2 0 77 6 7 77 222222 888 0 0 55 5555555 0 5 88888888888888888888 0 7 8888888888 2222222222222 11 22222222 777 4 0 0 33 999999999999999999999999999999999999 4 55 44 111 000000000 7 7 666 1111 7 7 7 99 99999 3333 3 6 0 888 44 99 99 111111111 0 0 888 11 1111 4 4 6 4 9 4 0 0 4 99 4 7 1111111111111111111111111111111111111111111111111111 555555555 99 11111111 11 0 0 11 1 666666 0 5 0 0 0 9999999999999 00000 9 8 4 4 5 555 00000 0 0 9999 4 11111111 66666666666666666666666 9 4 4 22 11 4 111 4 0 4 66666 4 4 4 66 11 3 000 4 0 99 888 0 2 0 888 99 111111111111111111111111111 0 0 9 1 1 222 0 0 1 0000000 111 7 7 3 1111111111111 7 111111111111 8888888 3 9999999999999999999999999999999999999999999999999999999999999999999999999 0 0 8 8 8 666 0 8 0 222222 8 0 2 5 888888 2 0 0 0 2 88 55 888 333 3333 7 3
consensus : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-G----AACG-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCT--NAATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTTTT------------------T-T--ACAAAA-AT-AA-GAATTTAG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATG----------------TTGTT--TT--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTT-CATCAAAA-TCGTACAAATA------TTG-AN-GTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATC-CTA--ATA----TT-------TGAGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
Reference ( family-1438 ) : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTATCGGTTT-------A-G----AGNG-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCT--TAATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATATC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTTTT------------------T-T--ACAAAA-AT-AA-GAATTTAG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATG----------------TTGTT--T---CT-AATA-TGAGGAATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGNAAGAATGAG---T---TGGTGGACGA-T-AGGGTTT-TATCAAAA-TCGTACAAATA------TTG-AN-GTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATC-CTA--ATA----TN-------TGAGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTNTGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|1 : ACGTAAAGGTC---ATGTA------AGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATA-AACA------AGACA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----AAACA-T-----TACACACACACACACTATTAG--ATATACATGTAT-TG----TTAT-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTATCGGTTT-------A-G----AAC--AAAATTTTACAGCT---AGGATTTTAA-GCAAAATGCTTTTTTA------T--TGCAATGCAAGCATGTACTG-CTTCAAATA-TCT--TAATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAAGATATC-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGATGTTTATTACTA---GTAATACTCTGTATAG--ATTGAA---TA-AG-TGTACTTC-TAAAAGCTGCTTA-TTTAGAACAGA-TAAAAAA-GTAATGATACACA--TCTTCAA-TAAAATCA----------------G-TACCAAGCTAATTAGATTGAATCAGAAT--GG--TTC--------ACACA-CATA--GG--A-ATATC-T-GAT-AAATATTGATTAAAA-AGATCTGAATTAAG-A-TTGC-CAGCAT--CATTT----T-ATAT----CTGACAATGTATTTTATTATACAAATGTTC---TCCAAAA-T---ATGAG-TTC----AT-TTC--------CTTTTTT-----------------------ACAAAA-AT-AA-GAATTTAG--GA--CTC-TTT--AA-AGATGA-ATT--T--CCTGAAG-C-A-TT--T--TTAAT-A-TAGTCCGGAA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGTTTTCCAAGTA---T--GATG----------------TTGTT--TT--CC-AATA-TGAGGGATTTTGAATTG-T-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGATTT-CATCAAAA-TTGTACAAATACCAACTTTG-AAAGTGAATAGCTAT-AATTCATAATTTTAAAA--AAC-AGCAACAAG------------TTGT---TCTCCTTG--TTTGTA--ACGATCCCATC-CTA----------T-------TGAGCG-AGA-GGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|10 : TTT----C-TTAG----TTGACAAAG-A--ATATTATAATGA---TT---TCCAAAG-TGA-TAAAG-TCCC---ATACTT--------TTTTTTT------------------T-T--ACCGAA-AT-AG-GAATGTAAAAGA--CTC-TTG--AATAGG-GA-TAT--C--CCATAAG-C-A-CT--T--TAAgtgcttgatagttgtgacagtgttttca
gi|11 : ctgtatttaaaaactcttgACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGTA-AATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT--AACG------AGGGG---A-AAGATAT-----------AGAGAA-AATCAAAACAT-----A---A-T-----TATATACA-AGACA--A---G--ATATAGACGTATGTG----A-AC-TATACATAT--AT---A--TTAA-C-ATATT-tgaaaatttctatataggttaaagttcaaatttgaggaagtttgaattgaacgttagtaat
gi|12 : aAGA---A-AGAA-ATAA----A--CAAATGAA-AATATGAAC------------------------ACACACA---TAT--G---TATACATGTA--------C-AC-T---TACAT--A--------AA----------T-A-GTACCGGTTT-------AGG----AATG-AAAA-------------AAAA--TTAA-ACAAAAA--------G------T--TGCAATGTA
gi|14 : cataaaggtcatatacaataaaatatgatgtgcacACAATAGAATATGATGTAGAGAG--A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTT-----ATACA-TACATGTACATACATACACA-TGT-----ATATACATGTACACA----T-ACATACATACATAGAT---A--TAAATT-ATGTT-T-A-GTA
gi|15 : tgaaggttatatTA------TTG-AT-GCGAGTGGCCA--ATTT-ATTATTTTCACG--AAC-AATAACTAC------------TT----------TTGAATTTG-A--A-GATCC-ATT-CTA--ATA----TTATAGACATGAACGTAGA-AGAAT-ACTTCTTAAGCC---GTATATTAGCCTAA-----CAGCTTCTACTTGAACGTC
gi|16 : C-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTTGATCATAGCCATTTGTAATTTCCAGTATGG--CTTGTA---TC-AA-TGTATTTC-TACAATATGTATA-CTTTGGACAAA-CAAAAAA-GTAATGATAAGCA--TTTCCAA-
gi|17 : ggactaACATCAAGGTC---ATATA------GGTCGTGGTATAGAAAGAGTA-AACAATAGAATAAGCTGAGAAAGAAAAATCAACCAAAAAC--TA-A--A------AGAAAG--A-AAGA-A-----------AAAAAAA-AATCCAAAAA------AAAC----------CATACAa
gi|2 : ATA-AACA------AAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAACAT-----AAACAGT-----TACACACACACACACTAT--ATAATATACATGTAT-TG----T-AT-TACATACAT--ATATAA--CAAATTAATATT-TCA-GTATTCGTCTTTTATTGA-T----AGCG-AAAATTTTACAG-T---AGGATTTTAA-GCAAAATGCTTTTTTAC-----T--TGCAATGCAAGCATGTACTGCCTTCAAATATTCT--TAATGTT-G--ACA-T-TACAG--TG----TATAA--TTAAGATATCGCATA----AAC-A--TAAC--TTAAGT-------T-CAGGCTTGATGTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG-TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATA-TA--------------------TA-GACTTGGAATTCAGAATGGTTCACACAATTAGGA--A-ATATCTT-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAGAA-TTGC-CAGCATGCCATTTTTTAT-TTAT----CTGAC-ATGTATTTTATTATACAAATGTTCATTTCCAAAA---ATATGAGCTTC----AT-TTC--------CCTTTTT------------------TAC--ACAAAACATAAA-GAACTTAG--GA--CTC-TTT--AA-AGATGG-AATTGT--CCTGAAGCC-A-TTTAT--TCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATG----------------TTGTT--TTTCCC-AATACTGAGGGATTTTGAATTGTT-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCT---TAGTGGACGGTT-AGGATTT-CATCAAAA-T-GTACAAATACCAAC-TTGAAA-GTGAATAGCTAT-AATT-TCAATtg
gi|2 : c-AAT--GG--TTC--------ACACA--ATT--AGGAA-ATATC-TTGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-AATTGC-CAGCATGCCATTT----T-TTATTTATCTGACA-TGTATTTTATTATACAAATGTTCATTTCCAAAAAT---ATGAGCTTC----AT-TTC--------CCTTTTT------------------TAC--ACAAAACAT-AAAGAACTTAG--GA--CTC-TTT--AA-AGATGG-AAT--TGTCCTGAAG-CCA-TT--TATTCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATG----------------TTGTT--TTTCCC-AATACTGAGGGATTTTGAATTG-TTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TGCTTAGTGGACGG-TTAGGATTT-CATCAAAA-T-GTACAAATA---------------------CCA----------ACTTGAAAGTGAAT-AGCTATAA--------------------TTTC-----------A--A-TATCCCATAACTA--TTT----TG-------T-AGCG-AGAGAGAATTACATCTTAAATCCTTGT-TATTATTATG------CTGCTTCAACTTGAATGCCTTCTA-ATAATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATTatcccataactattttgtagcgagagagaattacatcttaaatccttgttattattatgctgcttcaacttgaatgccttctaataattaggagtctactgtctttttctgagcaatttatccccacacaacatccgagtattttcaagtacaagtctttaataaatgcctcatttatcttaagtttttcacagttcacctattactcagcattcaaagaatatt
gi|20 : cataaacaaaagatcaacaagaataaacaaaagaacaatctaaacataaacagttacacacacacacactatataatatacatgtattgtattacatacatatataacaaattaatatttcagtattcgtcttttattgatagcgaaaattttacagtaggattttaagcaaaatgcttttttacttgcaatgcaagcatgtactgccttcaaatattcttaatgttgacattacagtgtataattaagatatcgcataaacataacttaagttcaggcttgatgtttattactagtaatactctgtatagatattgaattgtatagtgtacttcttaaaagctgcttattttagaacagattaaaaaagtaatgatacacatcttcaattaaaatcaagttaccaaggactatatatagacttggaattcagTACTCATTACTA---GTAATATTCTATATAT--ATTGAA----A-AG-TGTATTTC-TAGAAACTGCATG-TGCAGAA
gi|21 : gtACATTAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTT-TAGAAAAGAATGGGTTGAAAAAGAAAAa
gi|3 : aA---A-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATACATTGTACAGACA-T------GCATACAGACAGAC-A---G--ACAGACATTTAT-TAAATTT-AG-TAC-TAAAT--AG---G--CAAAAT-ATTTT-T-ATGTATT---------------------------ATCTTA--A-T---A---TTTTA--------CGTTTTGTTG------C--TGCAATGTAATCATGCACTG-ATTCAAATT-TCT--GAATATT-G--ATA-T-TT-AG--TT----CATAG--CTAGGACTTC-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAAAGTAATTGCTA---ATGATATTTTGTATA--------A---CA-TG-TGT--TTA-TAGAAG-TGAATT-TTAAGAACAGA-TTAAAAATGTAATGACATGCA--TCTCCGA-TAAAATCA----------------G-TA--------------------CA-A--------TTC--------CCACA-CATT--GG--A-GTA-----------AT-TT--T-AAAA-A-AT-TGAATTATG-A-TTGC-TAGCAT-----------------------GACAATGTATCATA-----CCGACGTTC---TCCAAAA-TGA-AAGAC-TTT----AT-TTC--------CTTTTTTTTTTTTTTTTTTTCTTCTT-T--ACAAAA-AT-GA-GAATTTTG--GA--CTC-TTTTGAA-TGAAGA-AAT--T--CTAAAAG-T-A-TT--T--TTATT-A-TATTCTGGCA-AGTTGTTCCATT--GTTT---GAGAGTG-GAGGGAAAAA--GCTTTCCATATA---T--GATG----------------TT---------CT-AATA-TGAGGAATTTTAAACTG-T-AAAGTA-CCAGTTTGAGGATCGAAATAATGAG---T---TGGTGGACGA-T-ATGGTTC-TATCAAA--TCGTATAAATG------TTG-AG-GTGAATAGTCATTAATT-AT---TCTAAAT--A-----CAATAAC------------TTATGAATTTTTCTA--CTTGT---------------CT----------------------GTA-AGA-AGA-TCCCATCCTA-------GT-T--TACCACAGAGAAATTGCATCATCTTAAA--CCTGTTATCCAATTTGAAGT---------TTTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTT
gi|4 : cACATACAT--AC---A--TAAATA-ATATCAT-G-GTACCAGTTT-------A-G----GGGGGAAAATT--ACAG-TTGTAGGATCTTAA-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCT--CAATGTT-G--ACA-T-TA-AG--T--------------AGGATATC-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGATATCTATTATTA---GTAATATTCTGTATAG--ACTGAA---AA-AG-TGTAGTTC-TAGAAGTTGCGTA-TTTAGAATAGA-CAAAAAA-GTAATGATATGCA--TCTTCAA-TAAAACCA----------------G-TG--------------------CA-------G--TTC--------CCGCA-ACTT--------------T-GAT----------T-AAAA-AGACCTGAATTAAG-A-TTGC-TAGCAT--TATTG----C-TTAC----CTGGCAATGTATTATATTATACCGAAGTTC---CCCAAAT-TGA-AAGAG-TTA----AT-TTC--------CTTTTTT------------------T-T---CAAAA-AT-AA-GAATTTAGGAGA--CTCTTTA--AA-AGATGA-AAT--T--CCAGAAG-A-ATTT--T--TAAAT-ATTAGTCTGGCA-AGGTGTTCCATT--GTTT---GACATTG-GAGGG--AAAAAGCTTTCCAAGTA---T--AATG----------------TTG-T--T---CT-AATA-TGAGG----------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---T---TGATGGAGGA-T--GGGTTC-TATC-AAA-TCATACAACTA------TTG-AG-GTGAGTAGCCAT---TA-ATAA-TTAAAAA--AACAAACAATAACGACTTATATGAATTGT---TTTCCTTG--TTTGTAAGA-GATCCCATC-CTATCATACAACTT-------TGAGCG-AGA-AGAATTGCATCTTAAACC--TGT-TATTATTCTGG-----CTGCTTCAACTTGAATGTCTTCTA-AAAATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTAT-TGTC-T--ACAACTGCtttaaaacttattgtagccttttc
gi|5 : cGGATTT-AA-GCAAA-C-CTTTGTTGGCAACTTCGTGCAATGTAAGCAT-TA--G-CTTCAAATA-CGT--GAATGCCCA--ACG-T-TA-----TG----TAT-----T-GGAT-TC-CATAC---AA--A--TAAT--TCAAAT-------C-CAGG-TTAATAGTCTTTACTA---GTAATATTATGTATAG--ATTGAA---AA-GGTTGTATTTC-TAAATGC-GCATA-TTTAGAAC-GA-TAAAAAA-TT-ATGATATGCGATTCTTCGA-TAAAATCA----------------GTTA--------------------CA-A--------TTC--------CCACT-CTTT--GG--ATATATC-T-GAT-AAACATTGAT--AAA-AGATCTTAA--AAG-A--TGA-TAGTA----AATC----C-TTAatata
gi|5 : C----AT-TTT--------GTTTTT-----------------------------A-AT-AA-GAGTT-AG--GA--CTC-TTG--AA-AGATGACAAT--T--CCAG-AG-C-A-TTA-T--TGAATAA-TAGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGC--AATGTAACATTACAATATAATTATTGAT---CTCAATA-TTAGG-ATCTTG-GCTG-T-AAAGTCTCCAGTTCGAAGATTTAAAGA--------T---TGGTGGATCA-A-AAGATCTATTTTAAAATTCATACAAATA------TT---T-GTGAATGGC-----ATT-ATA--TTTAAAA--GAA-AACAAAAAC------------gcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|6 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaACAGAA-AGAA------AGAAA---A-ATAA-ATAA----A--CAAAAGAA-AACATGAACAT-----ATACA-T------ACATACACACACA-TAT--G---TATACAT-----------------ACATAGAT--AT---T----AATT-ACATA-T-A-GTACCGGTTT-------A-G----GAAG-GAAAT---------------AATTTAT-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTAATCATGTT-A--ACA-T-TA-AG--TGCATGTATAA--TTGGGATGTC-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGATATTTATTACCA---GTAATAATCTGTATAG--ATTGGA---AA-AG-TGTAAATC-TAAAAGTTGCATA-TCTAGAACAGA-CAAA-----TAATGATACGCA--TCTTCAA-TAAAATCA----------------G-TA------------------------AC--AG--TTC--------CCACA-AACT--GA--AGAT-TC-T-GAT-AAACAT--------------CTGAATTAAG-G-TTGC-TGGCAT--TATcaa
gi|7 : cataaaggtaatatacaatagagcataatgtgcTCA----------------A-TA--------------------CA-A--------TTT--------GTACA-TATT--GG--A-GTACC-T-GATCAAATAT-GAC-GATATATATCTGCTTTCAA-G-TTACGTGACCT--C-TTT----CGTTGT-----TGGCAATGCATTATATTAAATCGATAATT---TC---AA-T-A-ATTAC-TTC----TT-TTT--------TTTTTTT------------------T-TTTACAGAA-AT-AG-GAATATAA---A--CTC-TTA--CA-TGAGGA-TAT--C--CAAGAAG-C-A-TT--T--T-AAG-G-TCATCAGGCA-GGCTGTCCCATT--GCTT---AACAGTG-GA---AAGAAGGGATCTTTATATA---TGGGATG----------------ACG-T--T---CT-AATT-CGAGGAAGTTTGAATTG-A-ATGGTA-TTAGT
gi|8 : tgattacggccttgg-TTAT----CTGACAATGCATTATATTATTCTGACGATC---TACAAAA-TAA-AAGAT-TTTTCCTAT-TTTAAAAAAAATTATTTT------------------T-T--ACAAAA-AT-AA-GAATTTAG--GAGACTC-TTA--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TAAAT-G-TAGTATAGCA-AGTTGTTCTATT--GTTT---GACAGTG-GAGGG--ATAAAGCTTTCCATATA---T--GATG----------------TTG-G--C---CT-AATA-TGAGGAATTTTAAACTG-T-AAGGTA-CCAGTTCAAAGATTGTATATGTAAG---T---TGGTGGACGA-T-AGGGTTT-TATCA
gi|9 : gTAT-----ATATACATGTAC---------ACATACATACAT--AA---AAATAAATT-ATATT-G-A-GTAT----TT-------A-GTACCATTA-AAAATATTAAA------AGG----TAACGCTAAA-----TGTTG------C--TGCAATGTAAGCATGTt
gi|9 : tatatatagtaCT--AAATGTT-GCTGCAATGTA-AGCATG----TCTAAGATTGGAATTTG-CATAT---AACAA--TAAT--TCAAGT-------T-CAGG-TTGATAGTCGTTACTG---GTAGTATTTTGTATAG--TTTGAA---AA-AG-TGTAATTC-TAGAAGCTGCATA-TTTAGAACAGT-TGAAAAA-GTAATCATActaagattggaatttgcatataacaataattcaagttcaggttgatagtcgttactggtagtattttgtatagtttgaaaaagtgtaattctagaagctgcatatttagaacagttgaaaaagtaatcata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|19 ): AGGTCATATCATTAGAATAATATGTAGTGGGGAAAAAATCAAAAGTATACATACGTACATACACACATATACATATATATACACAT
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 11 11 1 111111 111 1111111 33333333333333333333 3333333333 4444444444444 22222222 111 666666666666666666666666666666666666 222222222 11111 111111111 1111 0000000000000000000000000000000000000000000000000000 111111111 11 11111111 111111 2222222222222 11111 111 11111 1 1111 11111111 333333333333333333333333 11 111 1 1 5555555555555555555555555 1 1111111 333333333333 222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000 111 222222 1 222222 1 1 11 222 222 2222
lowQualScore : 1 777 888888 11 0 1 55 0 6 22 999999 888 5 5 00 4444444 5 2 11111111111111111111 3 0 2222222222 4444444444444 66 11111111 444 4 5 5 111 222222222222222222222222222222222222 1 33 55 999 111111111 6 6 1 77 8888 5 5 5 77 22222 9999 2 5 5 888 00 66 66 777777777 5 1 777 66 3333 4 4 2 4 1 4 5 5 0 77 1 5 6666666666666666666666666666666666666666666666666666 999999999 00 33333333 22 5 5 55 0 111111 5 2 5 5 5 0000000000000 22222 0 0 3 7 0 777 88888 1 0 3333 4 66666666 777777777777777777777777 8 4 4 66 66 66 4 777 4 2 4 66666 4 4 4 00 66 5 777 5 0 66 888 0 3 1 888 66 4444444444444444444444444 5 0 2 0 1 777 5 1 0 1111111 666 4 77 6 9 666666666666 1 777777777777 9999999 0 888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 0 3 0 666 8 0 0 333333 3 0 1 2 222222 0 0 0 1 0 33 44 888 333 8888 6 7
lowQualScore : . ... ...... .. . . .. . . .. ...... ... . . .. ....... . . .................... . . .......... ............. .. ........ ... . . . ... .................................... . .. .. ... ......... . . . .. .... . . . .. ..... .... . . . ... .. .. .. ......... . . ... .. .... . . . . . . . . . .. . . .................................................... ......... .. ........ .. . . .. . ...... . . . . . ............. ..... . . . . . ... ..... . . .... . ........ ........................ . . . .. .. .. . ... . . . ..... . . . .. .. . ... . . .. ... . . . ... .. ......................... . . . . . ... . . . ....... ... . .. . . ............ . ............ ....... . ........................................................................... . . . . . ... . . . ...... . . . . ...... . . . . . .. .. ... ... .... . .
lowQualScore : 0 555 888888 00 2 0 77 6 7 77 222222 888 0 0 55 5555555 0 5 88888888888888888888 0 7 8888888888 2222222222222 11 22222222 777 4 0 0 333 999999999999999999999999999999999999 4 55 44 111 000000000 7 7 0 99 1111 7 7 7 99 99999 3333 3 9 0 888 44 99 99 111111111 0 0 888 11 1111 4 4 6 4 9 4 0 0 4 99 4 7 1111111111111111111111111111111111111111111111111111 555555555 99 11111111 11 0 0 11 1 666666 0 5 0 0 0 9999999999999 00000 9 8 4 4 5 555 00000 0 0 9999 4 11111111 000000000000000000000000 9 4 4 11 11 11 4 111 4 0 4 66666 4 4 4 66 11 3 000 4 0 99 888 0 2 0 888 99 4444444444444444444444444 0 0 2 1 1 222 0 7 1 0000000 111 0 99 7 3 111111111111 7 111111111111 8888888 3 333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 8 8 8 666 0 8 6 222222 8 0 2 5 888888 2 0 0 0 2 88 55 888 333 3333 7 3
consensus : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-GAAC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGT----------TGT--TT-----T--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
Reference ( family-1438 ) : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-GAAC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGT----------TGT--TT-----T--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|1 : ACGTAAAGGTC---ATGTA------AGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATA-AACA------AGACA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----AAACA-T-----TACACACACACACACTATTAG--ATATACATGTAT-TG----TTAT-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTATCGGTTT-------A-GAAC------AAAATTTTACAGCT---AGGATTTTAA-GCAAAATGCTTTTTTA------T--TGCAATGCAAGCATGTACTG-CTTCAAATA-TCTTA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAAGATATC-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGATGTTTATTACTA---GTAATACTCTGTATAG--ATTGAA---TA-AG-TGTACTTC-TAAAAGCTGCTTA-TTTAGAACAGA-TAAAAAA-GTAATGATACACA--TCTTCAA-TAAAATCA----------------G-TACCAAGCTAATTAGATTGAATCAGAAT--GG--TTC--------ACACA-CATA--GG--A-ATATC-T-GAT-AAATATTGATTAAAA-AGATCTGAATTAAG-A-TTGC-CAGCAT--CATTT----T-ATAT----CTGACAATGTATTTTATTATACAAATGTTC---TCCAAAA-T---ATGAG-TTC----AT-TTC--------CTTTT----------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTT--AA-AGATGA-ATT--T--CCTGAAG-C-A-TT--T--TTAAT-A-TAGTCCGGAA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGTTTTCCAAGTA---T--GATGT----------TGT--TT-----T--CC-AATA-TGAGGGATTTTGAATTG-T-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGATTTCA--TCAAAA-TTGTACAAATACCAACTTTGAAAGTGAATAGCTAT-AATTCATAATTTTAAAA--AAC-AGCAACAAG------------TTGT---TCTCCTTG--TTTGTA--ACGATCCCATCCTA-----------T-------T-G-AGCG-AGA-GGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|10 : TTT----C-TTAG----TTGACAAAG-A--ATATTATAATGA---TT---TCCAAAG-TGA-TAAAG-TCCC---ATACTT--------TTTTT--TT------------------T-TACCGAA-AT-AG-GAATGTAAAA--GA--CTC-TTG--AATAGG-GA-TAT--C--CCATAAG-C-A-CT--T--TAAgtgcttgatagttgtgacagtgttttca
gi|11 : ctgtatttaaaaactcttgACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGTA-AATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT--AACG------AGGGG---A-AAGATAT-----------AGAGAA-AATCAAAACAT-----A---A-T-----TATATACA-AGACA--A---G--ATATAGACGTATGTG----A-AC-TATACATAT--AT---A--TTAA-C-ATATT-tgaaaatttctatataggttaaagttcaaatttgaggaagtttgaattgaacgttagtaat
gi|12 : aAGA---A-AGAA-ATAA----A--CAAATGAA-AATATGAAC------------------------ACACACA---TAT--G---TATACATGTA--------C-AC-T---TACAT--A--------AA----------T-A-GTACCGGTTT-------AGGAAT----G-AAAA-------------AAAA--TTAA-ACAAAAA--------G------T--TGCAATGTA
gi|14 : cataaaggtcatatacaataaaatatgatgtgcacACAATAGAATATGATGTAGAGAG--A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTT-----ATACA-TACATGTACATACATACACA-TGT-----ATATACATGTACACA----T-ACATACATACATAGAT---A--TAAATT-ATGTT-T-A-GTA
gi|15 : tgaaggttatatTA------TTG-ATGCGAGTGGCCA--ATTT-ATTATTTTCACG--AAC-AATAACTAC------------TT----------TTGAATTTG-A--A-GATCC-ATTCTA--A-TA----TTATAGACAT-G-AACGTAGA-AGAAT-ACTTCTTAAGCC---GTATATTAGCCTAA-----CAGCTTCTACTTGAACGTC
gi|16 : GGACTAC-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTTGATCATAGCCATTTGTAATTTCCAGTATGG--CTTGTA---TC-AA-TGTATTTC-TACAATATGTATA-CTTTGGACAAA-CAAAAAA-GTAATGATAAGCA--TTTCCAA-
gi|17 : ACATCAAGGTC---ATATA------GGTCGTGGTATAGAAAGAGTA-AACAATAGAATAAGCTGAGAAAGAAAAATCAACCAAAAAC--TA-A--A------AGAAAG--A-AAGA-A-----------AAAAAAA-AATCCAAAAA------AAAC----------CATACAa
gi|2 : ATA-AACA------AAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAACAT-----AAACAGT-----TACACACACACACACTAT--ATAATATACATGTAT-TG----T-AT-TACATACAT--ATATAA--CAAATTAATATT-TCA-GTATTCGTCTTTTATTGA-TAGC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAATGCTTTTTTAC-----T--TGCAATGCAAGCATGTACTGCCTTCAAATATTCTTA--ATGTT-G--ACA-T-TACAG--TG----TATAA--TTAAGATATCGCATA----AAC-A--TAAC--TTAAGT-------T-CAGGCTTGATGTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG-TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATA-TA--------------------TA-GACTTGGAATTCAGAATGGTTCACACAATTAGGA--A-ATATCTT-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAGAA-TTGC-CAGCATGCCATTTTTTAT-TTAT----CTGAC-ATGTATTTTATTATACAAATGTTCATTTCCAAAA---ATATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACATAAA-GAACTT--AG--GA--CTC-TTT--AA-AGATGG-AATTGT--CCTGAAGCC-A-TTTAT--TCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATGT----------TGT--TT-----TTCCC-AATACTGAGGGATTTTGAATTGTT-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCT---TAGTGGACGGTT-AGGATTTCA--TCAAAA-T-GTACAAATACCAAC-TTGAAAGTGAATAGCTAT-AATT-TCAATtg
gi|2 : c-AAT--GG--TTC--------ACACA--ATT--AGGAA-ATATC-TTGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-AATTGC-CAGCATGCCATTT----T-TTATTTATCTGACA-TGTATTTTATTATACAAATGTTCATTTCCAAAAAT---ATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACAT-AAAGAACTT--AG--GA--CTC-TTT--AA-AGATGG-AAT--TGTCCTGAAG-CCA-TT--TATTCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATGT----------TGT--TT-----TTCCC-AATACTGAGGGATTTTGAATTG-TTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TGCTTAGTGGACGG-TTAGGATTTCA--TCAAAA-T-GTACAAATA--------------------CCA----------ACTTGAAAGTGAAT-AGCTATAA--------------------TTTC-----------A--A-TATCCCAT---A--ACTA----TT-------TTGTAGCG-AGAGAGAATTACATCTTAAATCCTTGT-TATTATTATG------CTGCTTCAACTTGAATGCCTTCTA-ATAATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATTatcccataactattttgtagcgagagagaattacatcttaaatccttgttattattatgctgcttcaacttgaatgccttctaataattaggagtctactgtctttttctgagcaatttatccccacacaacatccgagtattttcaagtacaagtctttaataaatgcctcatttatcttaagtttttcacagttcacctattactcagcattcaaagaatatt
gi|20 : cataaacaaaagatcaacaagaataaacaaaagaacaatctaaacataaacagttacacacacacacactatataatatacatgtattgtattacatacatatataacaaattaatatttcagtattcgtcttttattgatagcgaaaattttacagtaggattttaagcaaaatgcttttttacttgcaatgcaagcatgtactgccttcaaatattcttaatgttgacattacagtgtataattaagatatcgcataaacataacttaagttcaggcttgatgtttattactagtaatactctgtatagatattgaattgtatagtgtacttcttaaaagctgcttattttagaacagattaaaaaagtaatgatacacatcttcaattaaaatcaagttaccaaggactatatatagacttggaattcagTACTCATTACTA---GTAATATTCTATATAT--ATTGAA----A-AG-TGTATTTC-TAGAAACTGCATG-TGCAGAA
gi|21 : gtACATTAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTT-TAGAAAAGAATGGGTTGAAAAAGAAAAa
gi|3 : aA---A-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATACATTGTACAGACA-T------GCATACAGACAGAC-A---G--ACAGACATTTAT-TAAATTT-AG-TAC-TAAAT--AG---G--CAAAAT-ATTTT-T-ATGTA-----TT-------A---------------TCTTA--A-T---A---TTTTA--------CGTTTTGTTG------C--TGCAATGTAATCATGCACTG-ATTCAAATT-TCTGA--ATATT-G--ATA-T-TT-AG--TT----CATAG--CTAGGACTTC-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAAAGTAATTGCTA---ATGATATTTTGTATA--------A---CA-TG-TGT--TTA-TAGAAG-TGAATT-TTAAGAACAGA-TTAAAAATGTAATGACATGCA--TCTCCGA-TAAAATCA----------------G-TA--------------------CA-A--------TTC--------CCACA-CATT--GG--A-GTA-----------AT-TT--T-AAAA-A-AT-TGAATTATG-A-TTGC-TAGCAT-----------------------GACAATGTATCATA-----CCGACGTTC---TCCAAAA-TGA-AAGAC-TTT----AT-TTC--------CTTTT--TTTTTTTTTTTTTTTCTTCTT-TACAAAA-AT-GA-GAATTT--TG--GA--CTC-TTTTGAA-TGAAGA-AAT--T--CTAAAAG-T-A-TT--T--TTATT-A-TATTCTGGCA-AGTTGTTCCATT--GTTT---GAGAGTG-GAGGGAAAAA--GCTTTCCATATA---T--GATGT----------T--------------CT-AATA-TGAGGAATTTTAAACTG-T-AAAGTA-CCAGTTTGAGGATCGAAATAATGAG---T---TGGTGGACGA-T-ATGGTTCTA--TCAAA--TCGTATAAATG------TTG-AGGTGAATAGTCATTAATT-AT---TCTAAAT--A-----CAATAAC------------TTATGAATTTTTCTA--CTTGT--------------CT-------------------------GTA-AGA-AGA-TCCCATCCTA-------GT-T--TACCACAGAGAAATTGCATCATCTTAAA--CCTGTTATCCAATTTGAAGT---------TTTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTT
gi|4 : cACATACAT--AC---A--TAAATA-ATATCAT-G-GTACCAGTTT-------A-GGGG----GGAAAATT--ACAG-TTGTAGGATCTTAA-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTCA--ATGTT-G--ACA-T-TA-AG--T--------------AGGATATC-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGATATCTATTATTA---GTAATATTCTGTATAG--ACTGAA---AA-AG-TGTAGTTC-TAGAAGTTGCGTA-TTTAGAATAGA-CAAAAAA-GTAATGATATGCA--TCTTCAA-TAAAACCA----------------G-TG--------------------CA-------G--TTC--------CCGCA-ACTT--------------T-GAT----------T-AAAA-AGACCTGAATTAAG-A-TTGC-TAGCAT--TATTG----C-TTAC----CTGGCAATGTATTATATTATACCGAAGTTC---CCCAAAT-TGA-AAGAG-TTA----AT-TTC--------CTTTT--TT------------------T-T-CAAAA-AT-AA-GAATTT--AGGAGA--CTCTTTA--AA-AGATGA-AAT--T--CCAGAAG-A-ATTT--T--TAAAT-ATTAGTCTGGCA-AGGTGTTCCATT--GTTT---GACATTG-GAGGG--AAAAAGCTTTCCAAGTA---T--AATGT----------TG----T-----T--CT-AATA-TGAGG----------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---T---TGATGGAGGA-T--GGGTTCTA--TC-AAA-TCATACAACTA------TTG-AGGTGAGTAGCCAT---TA-ATAA-TTAAAAA--AACAAACAATAACGACTTATATGAATTGT---TTTCCTTG--TTTGTAAGA-GATCCCATCCTATCA-TACAACTT-------T-G-AGCG-AGA-AGAATTGCATCTTAAACC--TGT-TATTATTCTGG-----CTGCTTCAACTTGAATGTCTTCTA-AAAATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTAT-TGTC-T--ACAACTGCtttaaaacttattgtagccttttc
gi|5 : cGGATTT-AA-GCAAA-C-CTTTGTTGGCAACTTCGTGCAATGTAAGCAT-TA--G-CTTCAAATA-CGTGA--ATGCCCA--ACG-T-TA-----TG----TAT-----T-GGAT-TC-CATAC---AA--A--TAAT--TCAAAT-------C-CAGG-TTAATAGTCTTTACTA---GTAATATTATGTATAG--ATTGAA---AA-GGTTGTATTTC-TAAATGC-GCATA-TTTAGAAC-GA-TAAAAAA-TT-ATGATATGCGATTCTTCGA-TAAAATCA----------------GTTA--------------------CA-A--------TTC--------CCACT-CTTT--GG--ATATATC-T-GAT-AAACATTGAT--AAA-AGATCTTAA--AAG-A--TGA-TAGTA----AATC----C-TTAatata
gi|5 : C----AT-TTT--------GTTTT--T---------------------------A-AT-AA-GAGTT---AG--GA--CTC-TTG--AA-AGATGACAAT--T--CCAG-AG-C-A-TTA-T--TGAATAA-TAGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGC--AATGTAACATTACAATATAATTATTGAT--CTCAATA-TTA-GGATCTTG-GCTG-T-AAAGTCTCCAGTTCGAAGATTTAAAGA--------T---TGGTGGATCA-A-AAGATCT-ATTTTAAAATTCATACAAATA------TT---TGTGAATGGC-----ATT-ATA--TTTAAAA--GAA-AACAAAAAC------------gcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|6 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaACAGAA-AGAA------AGAAA---A-ATAA-ATAA----A--CAAAAGAA-AACATGAACAT-----ATACA-T------ACATACACACACA-TAT--G---TATACAT-----------------ACATAGAT--AT---T----AATT-ACATA-T-A-GTACCGGTTT-------A-GGAA----G-GAAAT---------------AATTTAT-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTAATCATGTT-A--ACA-T-TA-AG--TGCATGTATAA--TTGGGATGTC-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGATATTTATTACCA---GTAATAATCTGTATAG--ATTGGA---AA-AG-TGTAAATC-TAAAAGTTGCATA-TCTAGAACAGA-CAAA-----TAATGATACGCA--TCTTCAA-TAAAATCA----------------G-TA------------------------AC--AG--TTC--------CCACA-AACT--GA--AGAT-TC-T-GAT-AAACAT--------------CTGAATTAAG-G-TTGC-TGGCAT--TATcaa
gi|7 : cataaaggtaatatacaatagagcataatgtgcTCA----------------A-TA--------------------CA-A--------TTT--------GTACA-TATT--GG--A-GTACC-T-GATCAAATAT-GAC-GATATATATCTGCTTTCAA-G-TTACGTGACCT--C-TTT----CGTTGT-----TGGCAATGCATTATATTAAATCGATAATT---TC---AA-T-A-ATTAC-TTC----TT-TTT--------TTTTTTTTT------------------T-TACAGAA-AT-AG-GAATAT--A---AA--CTC-TTA--CA-TGAGGA-TAT--C--CAAGAAG-C-A-TT--T--T-AAG-G-TCATCAGGCA-GGCTGTCCCATT--GCTT---AACAGTG-GA---AAGAAGGGATCTTTATATA---TGGGATGA----------CG----T-----T--CT-AATT-CGAGGAAGTTTGAATTG-A-ATGGTA-TTAGT
gi|8 : tgattacggccttgg-TTAT----CTGACAATGCATTATATTATTCTGACGATC---TACAAAA-TAA-AAGAT-TTTTCCTAT-TTTAAAAAAAATTATT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GAGACTC-TTA--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TAAAT-G-TAGTATAGCA-AGTTGTTCTATT--GTTT---GACAGTG-GAGGG--ATAAAGCTTTCCATATA---T--GATGT----------TG----G-----C--CT-AATA-TGAGGAATTTTAAACTG-T-AAGGTA-CCAGTTCAAAGATTGTATATGTAAG---T---TGGTGGACGA-T-AGGGTTTTA--TCA
gi|9 : gTAT-----ATATACATGTAC---------ACATACATACAT--AA---AAATAAATT-ATATT-G-A-GTA----TTT-------A-GTACCATTA-AAAATATTAAA------AGG----TAACGCTAAA-----TGTTG------C--TGCAATGTAAGCATGTt
gi|9 : tatatatagtaCTAA--ATGTT-GCTGCAATGTA-AGCATG----TCTAAGATTGGAATTTG-CATAT---AACAA--TAAT--TCAAGT-------T-CAGG-TTGATAGTCGTTACTG---GTAGTATTTTGTATAG--TTTGAA---AA-AG-TGTAATTC-TAGAAGCTGCATA-TTTAGAACAGT-TGAAAAA-GTAATCATActaagattggaatttgcatataacaataattcaagttcaggttgatagtcgttactggtagtattttgtatagtttgaaaaagtgtaattctagaagctgcatatttagaacagttgaaaaagtaatcata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|19 ): AGGTCATATCATTAGAATAATATGTAGTGGGGAAAAAATCAAAAGTATACATACGTACATACACACATATACATATATATACACAT
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 11 11 1 111111 111 1111111 33333333333333333333 3333333333 4444444444444 22222222 111 666666666666666666666666666666666666 222222222 11111 111111111 1111 0000000000000000000000000000000000000000000000000000 111111111 11 11111111 111111 2222222222222 11111 111 11111 1 1111 11111111 333333333333333333333333 11 111 1 1 5555555555555555555555555 1 1111111 333333333333 222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000 111 222222 1 222222 1 1 11 222 222 2222
lowQualScore : 1 777 888888 11 0 1 55 0 6 22 999999 888 5 5 00 4444444 5 2 11111111111111111111 3 0 2222222222 4444444444444 66 11111111 444 4 5 5 111 222222222222222222222222222222222222 1 33 55 999 111111111 6 6 1 77 8888 5 5 5 77 22222 9999 2 5 5 888 00 66 66 777777777 5 1 777 66 3333 4 4 2 4 1 4 5 5 0 77 1 5 6666666666666666666666666666666666666666666666666666 999999999 00 33333333 22 5 5 55 0 111111 5 2 5 5 5 0000000000000 22222 0 0 3 7 0 777 88888 1 0 3333 4 66666666 777777777777777777777777 8 4 4 66 66 66 4 777 4 2 4 66666 4 4 4 00 66 5 777 5 0 66 888 0 3 1 888 66 4444444444444444444444444 5 0 2 0 1 777 5 1 0 1111111 666 4 77 6 9 666666666666 1 777777777777 9999999 0 888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 0 3 0 666 8 0 0 333333 3 0 1 2 222222 0 0 0 1 0 33 44 888 333 8888 6 7
lowQualScore : . ... ...... .. . . .. . . .. ...... ... . . .. ....... . . .................... . . .......... ............. .. ........ ... . . . ... .................................... . .. .. ... ......... . . . .. .... . . . .. ..... .... . . . ... .. .. .. ......... . . ... .. .... . . . . . . . . . .. . . .................................................... ......... .. ........ .. . . .. . ...... . . . . . ............. ..... . . . . . ... ..... . . .... . ........ ........................ . . . .. .. .. . ... . . . ..... . . . .. .. . ... . . .. ... . . . ... .. ......................... . . . . . ... . . . ....... ... . .. . . ............ . ............ ....... . ........................................................................... . . . . . ... . . . ...... . . . . ...... . . . . . .. .. ... ... .... . .
lowQualScore : 0 555 888888 00 2 0 77 6 7 77 222222 888 0 0 55 5555555 0 5 88888888888888888888 0 7 8888888888 2222222222222 11 22222222 777 4 0 0 333 999999999999999999999999999999999999 4 55 44 111 000000000 7 7 0 99 1111 7 7 7 99 99999 3333 3 9 0 888 44 99 99 111111111 0 0 888 11 1111 4 4 6 4 9 4 0 0 4 99 4 7 1111111111111111111111111111111111111111111111111111 555555555 99 11111111 11 0 0 11 1 666666 0 5 0 0 0 9999999999999 00000 9 8 4 4 5 555 00000 0 0 9999 4 11111111 000000000000000000000000 9 4 4 11 11 11 4 111 4 0 4 66666 4 4 4 66 11 3 000 4 0 99 888 0 2 0 888 99 4444444444444444444444444 0 0 2 1 1 222 0 7 1 0000000 111 0 99 7 3 111111111111 7 111111111111 8888888 3 333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 8 8 8 666 0 8 6 222222 8 0 2 5 888888 2 0 0 0 2 88 55 888 333 3333 7 3
consensus : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-GAAC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGT----------TGT--TT-----T--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
Reference ( family-1438 ) : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-GAAC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGT----------TGT--TT-----T--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|1 : ACGTAAAGGTC---ATGTA------AGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATA-AACA------AGACA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----AAACA-T-----TACACACACACACACTATTAG--ATATACATGTAT-TG----TTAT-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTATCGGTTT-------A-GAAC------AAAATTTTACAGCT---AGGATTTTAA-GCAAAATGCTTTTTTA------T--TGCAATGCAAGCATGTACTG-CTTCAAATA-TCTTA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAAGATATC-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGATGTTTATTACTA---GTAATACTCTGTATAG--ATTGAA---TA-AG-TGTACTTC-TAAAAGCTGCTTA-TTTAGAACAGA-TAAAAAA-GTAATGATACACA--TCTTCAA-TAAAATCA----------------G-TACCAAGCTAATTAGATTGAATCAGAAT--GG--TTC--------ACACA-CATA--GG--A-ATATC-T-GAT-AAATATTGATTAAAA-AGATCTGAATTAAG-A-TTGC-CAGCAT--CATTT----T-ATAT----CTGACAATGTATTTTATTATACAAATGTTC---TCCAAAA-T---ATGAG-TTC----AT-TTC--------CTTTT----------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTT--AA-AGATGA-ATT--T--CCTGAAG-C-A-TT--T--TTAAT-A-TAGTCCGGAA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGTTTTCCAAGTA---T--GATGT----------TGT--TT-----T--CC-AATA-TGAGGGATTTTGAATTG-T-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGATTTCA--TCAAAA-TTGTACAAATACCAACTTTGAAAGTGAATAGCTAT-AATTCATAATTTTAAAA--AAC-AGCAACAAG------------TTGT---TCTCCTTG--TTTGTA--ACGATCCCATCCTA-----------T-------T-G-AGCG-AGA-GGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|10 : TTT----C-TTAG----TTGACAAAG-A--ATATTATAATGA---TT---TCCAAAG-TGA-TAAAG-TCCC---ATACTT--------TTTTT--TT------------------T-TACCGAA-AT-AG-GAATGTAAAA--GA--CTC-TTG--AATAGG-GA-TAT--C--CCATAAG-C-A-CT--T--TAAgtgcttgatagttgtgacagtgttttca
gi|11 : ctgtatttaaaaactcttgACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGTA-AATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT--AACG------AGGGG---A-AAGATAT-----------AGAGAA-AATCAAAACAT-----A---A-T-----TATATACA-AGACA--A---G--ATATAGACGTATGTG----A-AC-TATACATAT--AT---A--TTAA-C-ATATT-tgaaaatttctatataggttaaagttcaaatttgaggaagtttgaattgaacgttagtaat
gi|12 : aAGA---A-AGAA-ATAA----A--CAAATGAA-AATATGAAC------------------------ACACACA---TAT--G---TATACATGTA--------C-AC-T---TACAT--A--------AA----------T-A-GTACCGGTTT-------AGGAAT----G-AAAA-------------AAAA--TTAA-ACAAAAA--------G------T--TGCAATGTA
gi|14 : cataaaggtcatatacaataaaatatgatgtgcacACAATAGAATATGATGTAGAGAG--A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTT-----ATACA-TACATGTACATACATACACA-TGT-----ATATACATGTACACA----T-ACATACATACATAGAT---A--TAAATT-ATGTT-T-A-GTA
gi|15 : tgaaggttatatTA------TTG-ATGCGAGTGGCCA--ATTT-ATTATTTTCACG--AAC-AATAACTAC------------TT----------TTGAATTTG-A--A-GATCC-ATTCTA--A-TA----TTATAGACAT-G-AACGTAGA-AGAAT-ACTTCTTAAGCC---GTATATTAGCCTAA-----CAGCTTCTACTTGAACGTC
gi|16 : GGACTAC-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTTGATCATAGCCATTTGTAATTTCCAGTATGG--CTTGTA---TC-AA-TGTATTTC-TACAATATGTATA-CTTTGGACAAA-CAAAAAA-GTAATGATAAGCA--TTTCCAA-
gi|17 : ACATCAAGGTC---ATATA------GGTCGTGGTATAGAAAGAGTA-AACAATAGAATAAGCTGAGAAAGAAAAATCAACCAAAAAC--TA-A--A------AGAAAG--A-AAGA-A-----------AAAAAAA-AATCCAAAAA------AAAC----------CATACAa
gi|2 : ATA-AACA------AAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAACAT-----AAACAGT-----TACACACACACACACTAT--ATAATATACATGTAT-TG----T-AT-TACATACAT--ATATAA--CAAATTAATATT-TCA-GTATTCGTCTTTTATTGA-TAGC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAATGCTTTTTTAC-----T--TGCAATGCAAGCATGTACTGCCTTCAAATATTCTTA--ATGTT-G--ACA-T-TACAG--TG----TATAA--TTAAGATATCGCATA----AAC-A--TAAC--TTAAGT-------T-CAGGCTTGATGTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG-TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATA-TA--------------------TA-GACTTGGAATTCAGAATGGTTCACACAATTAGGA--A-ATATCTT-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAGAA-TTGC-CAGCATGCCATTTTTTAT-TTAT----CTGAC-ATGTATTTTATTATACAAATGTTCATTTCCAAAA---ATATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACATAAA-GAACTT--AG--GA--CTC-TTT--AA-AGATGG-AATTGT--CCTGAAGCC-A-TTTAT--TCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATGT----------TGT--TT-----TTCCC-AATACTGAGGGATTTTGAATTGTT-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCT---TAGTGGACGGTT-AGGATTTCA--TCAAAA-T-GTACAAATACCAAC-TTGAAAGTGAATAGCTAT-AATT-TCAATtg
gi|2 : c-AAT--GG--TTC--------ACACA--ATT--AGGAA-ATATC-TTGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-AATTGC-CAGCATGCCATTT----T-TTATTTATCTGACA-TGTATTTTATTATACAAATGTTCATTTCCAAAAAT---ATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACAT-AAAGAACTT--AG--GA--CTC-TTT--AA-AGATGG-AAT--TGTCCTGAAG-CCA-TT--TATTCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATGT----------TGT--TT-----TTCCC-AATACTGAGGGATTTTGAATTG-TTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TGCTTAGTGGACGG-TTAGGATTTCA--TCAAAA-T-GTACAAATA--------------------CCA----------ACTTGAAAGTGAAT-AGCTATAA--------------------TTTC-----------A--A-TATCCCAT---A--ACTA----TT-------TTGTAGCG-AGAGAGAATTACATCTTAAATCCTTGT-TATTATTATG------CTGCTTCAACTTGAATGCCTTCTA-ATAATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATTatcccataactattttgtagcgagagagaattacatcttaaatccttgttattattatgctgcttcaacttgaatgccttctaataattaggagtctactgtctttttctgagcaatttatccccacacaacatccgagtattttcaagtacaagtctttaataaatgcctcatttatcttaagtttttcacagttcacctattactcagcattcaaagaatatt
gi|20 : cataaacaaaagatcaacaagaataaacaaaagaacaatctaaacataaacagttacacacacacacactatataatatacatgtattgtattacatacatatataacaaattaatatttcagtattcgtcttttattgatagcgaaaattttacagtaggattttaagcaaaatgcttttttacttgcaatgcaagcatgtactgccttcaaatattcttaatgttgacattacagtgtataattaagatatcgcataaacataacttaagttcaggcttgatgtttattactagtaatactctgtatagatattgaattgtatagtgtacttcttaaaagctgcttattttagaacagattaaaaaagtaatgatacacatcttcaattaaaatcaagttaccaaggactatatatagacttggaattcagTACTCATTACTA---GTAATATTCTATATAT--ATTGAA----A-AG-TGTATTTC-TAGAAACTGCATG-TGCAGAA
gi|21 : gtACATTAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTT-TAGAAAAGAATGGGTTGAAAAAGAAAAa
gi|3 : aA---A-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATACATTGTACAGACA-T------GCATACAGACAGAC-A---G--ACAGACATTTAT-TAAATTT-AG-TAC-TAAAT--AG---G--CAAAAT-ATTTT-T-ATGTA-----TT-------A---------------TCTTA--A-T---A---TTTTA--------CGTTTTGTTG------C--TGCAATGTAATCATGCACTG-ATTCAAATT-TCTGA--ATATT-G--ATA-T-TT-AG--TT----CATAG--CTAGGACTTC-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAAAGTAATTGCTA---ATGATATTTTGTATA--------A---CA-TG-TGT--TTA-TAGAAG-TGAATT-TTAAGAACAGA-TTAAAAATGTAATGACATGCA--TCTCCGA-TAAAATCA----------------G-TA--------------------CA-A--------TTC--------CCACA-CATT--GG--A-GTA-----------AT-TT--T-AAAA-A-AT-TGAATTATG-A-TTGC-TAGCAT-----------------------GACAATGTATCATA-----CCGACGTTC---TCCAAAA-TGA-AAGAC-TTT----AT-TTC--------CTTTT--TTTTTTTTTTTTTTTCTTCTT-TACAAAA-AT-GA-GAATTT--TG--GA--CTC-TTTTGAA-TGAAGA-AAT--T--CTAAAAG-T-A-TT--T--TTATT-A-TATTCTGGCA-AGTTGTTCCATT--GTTT---GAGAGTG-GAGGGAAAAA--GCTTTCCATATA---T--GATGT----------T--------------CT-AATA-TGAGGAATTTTAAACTG-T-AAAGTA-CCAGTTTGAGGATCGAAATAATGAG---T---TGGTGGACGA-T-ATGGTTCTA--TCAAA--TCGTATAAATG------TTG-AGGTGAATAGTCATTAATT-AT---TCTAAAT--A-----CAATAAC------------TTATGAATTTTTCTA--CTTGT--------------CT-------------------------GTA-AGA-AGA-TCCCATCCTA-------GT-T--TACCACAGAGAAATTGCATCATCTTAAA--CCTGTTATCCAATTTGAAGT---------TTTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTT
gi|4 : cACATACAT--AC---A--TAAATA-ATATCAT-G-GTACCAGTTT-------A-GGGG----GGAAAATT--ACAG-TTGTAGGATCTTAA-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTCA--ATGTT-G--ACA-T-TA-AG--T--------------AGGATATC-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGATATCTATTATTA---GTAATATTCTGTATAG--ACTGAA---AA-AG-TGTAGTTC-TAGAAGTTGCGTA-TTTAGAATAGA-CAAAAAA-GTAATGATATGCA--TCTTCAA-TAAAACCA----------------G-TG--------------------CA-------G--TTC--------CCGCA-ACTT--------------T-GAT----------T-AAAA-AGACCTGAATTAAG-A-TTGC-TAGCAT--TATTG----C-TTAC----CTGGCAATGTATTATATTATACCGAAGTTC---CCCAAAT-TGA-AAGAG-TTA----AT-TTC--------CTTTT--TT------------------T-T-CAAAA-AT-AA-GAATTT--AGGAGA--CTCTTTA--AA-AGATGA-AAT--T--CCAGAAG-A-ATTT--T--TAAAT-ATTAGTCTGGCA-AGGTGTTCCATT--GTTT---GACATTG-GAGGG--AAAAAGCTTTCCAAGTA---T--AATGT----------TG----T-----T--CT-AATA-TGAGG----------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---T---TGATGGAGGA-T--GGGTTCTA--TC-AAA-TCATACAACTA------TTG-AGGTGAGTAGCCAT---TA-ATAA-TTAAAAA--AACAAACAATAACGACTTATATGAATTGT---TTTCCTTG--TTTGTAAGA-GATCCCATCCTATCA-TACAACTT-------T-G-AGCG-AGA-AGAATTGCATCTTAAACC--TGT-TATTATTCTGG-----CTGCTTCAACTTGAATGTCTTCTA-AAAATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTAT-TGTC-T--ACAACTGCtttaaaacttattgtagccttttc
gi|5 : cGGATTT-AA-GCAAA-C-CTTTGTTGGCAACTTCGTGCAATGTAAGCAT-TA--G-CTTCAAATA-CGTGA--ATGCCCA--ACG-T-TA-----TG----TAT-----T-GGAT-TC-CATAC---AA--A--TAAT--TCAAAT-------C-CAGG-TTAATAGTCTTTACTA---GTAATATTATGTATAG--ATTGAA---AA-GGTTGTATTTC-TAAATGC-GCATA-TTTAGAAC-GA-TAAAAAA-TT-ATGATATGCGATTCTTCGA-TAAAATCA----------------GTTA--------------------CA-A--------TTC--------CCACT-CTTT--GG--ATATATC-T-GAT-AAACATTGAT--AAA-AGATCTTAA--AAG-A--TGA-TAGTA----AATC----C-TTAatata
gi|5 : C----AT-TTT--------GTTTT--T---------------------------A-AT-AA-GAGTT---AG--GA--CTC-TTG--AA-AGATGACAAT--T--CCAG-AG-C-A-TTA-T--TGAATAA-TAGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGC--AATGTAACATTACAATATAATTATTGAT--CTCAATA-TTA-GGATCTTG-GCTG-T-AAAGTCTCCAGTTCGAAGATTTAAAGA--------T---TGGTGGATCA-A-AAGATCT-ATTTTAAAATTCATACAAATA------TT---TGTGAATGGC-----ATT-ATA--TTTAAAA--GAA-AACAAAAAC------------gcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|6 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaACAGAA-AGAA------AGAAA---A-ATAA-ATAA----A--CAAAAGAA-AACATGAACAT-----ATACA-T------ACATACACACACA-TAT--G---TATACAT-----------------ACATAGAT--AT---T----AATT-ACATA-T-A-GTACCGGTTT-------A-GGAA----G-GAAAT---------------AATTTAT-ACAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTAATCATGTT-A--ACA-T-TA-AG--TGCATGTATAA--TTGGGATGTC-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGATATTTATTACCA---GTAATAATCTGTATAG--ATTGGA---AA-AG-TGTAAATC-TAAAAGTTGCATA-TCTAGAACAGA-CAAA-----TAATGATACGCA--TCTTCAA-TAAAATCA----------------G-TA------------------------AC--AG--TTC--------CCACA-AACT--GA--AGAT-TC-T-GAT-AAACAT--------------CTGAATTAAG-G-TTGC-TGGCAT--TATcaa
gi|7 : cataaaggtaatatacaatagagcataatgtgcTCA----------------A-TA--------------------CA-A--------TTT--------GTACA-TATT--GG--A-GTACC-T-GATCAAATAT-GAC-GATATATATCTGCTTTCAA-G-TTACGTGACCT--C-TTT----CGTTGT-----TGGCAATGCATTATATTAAATCGATAATT---TC---AA-T-A-ATTAC-TTC----TT-TTT--------TTTTTTTTT------------------T-TACAGAA-AT-AG-GAATAT--A---AA--CTC-TTA--CA-TGAGGA-TAT--C--CAAGAAG-C-A-TT--T--T-AAG-G-TCATCAGGCA-GGCTGTCCCATT--GCTT---AACAGTG-GA---AAGAAGGGATCTTTATATA---TGGGATGA----------CG----T-----T--CT-AATT-CGAGGAAGTTTGAATTG-A-ATGGTA-TTAGT
gi|8 : tgattacggccttgg-TTAT----CTGACAATGCATTATATTATTCTGACGATC---TACAAAA-TAA-AAGAT-TTTTCCTAT-TTTAAAAAAAATTATT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GAGACTC-TTA--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TAAAT-G-TAGTATAGCA-AGTTGTTCTATT--GTTT---GACAGTG-GAGGG--ATAAAGCTTTCCATATA---T--GATGT----------TG----G-----C--CT-AATA-TGAGGAATTTTAAACTG-T-AAGGTA-CCAGTTCAAAGATTGTATATGTAAG---T---TGGTGGACGA-T-AGGGTTTTA--TCA
gi|9 : gTAT-----ATATACATGTAC---------ACATACATACAT--AA---AAATAAATT-ATATT-G-A-GTA----TTT-------A-GTACCATTA-AAAATATTAAA------AGG----TAACGCTAAA-----TGTTG------C--TGCAATGTAAGCATGTt
gi|9 : tatatatagtaCTAA--ATGTT-GCTGCAATGTA-AGCATG----TCTAAGATTGGAATTTG-CATAT---AACAA--TAAT--TCAAGT-------T-CAGG-TTGATAGTCGTTACTG---GTAGTATTTTGTATAG--TTTGAA---AA-AG-TGTAATTC-TAGAAGCTGCATA-TTTAGAACAGT-TGAAAAA-GTAATCATActaagattggaatttgcatataacaataattcaagttcaggttgatagtcgttactggtagtattttgtatagtttgaaaaagtgtaattctagaagctgcatatttagaacagttgaaaaagtaatcata
blockSeqs : A CTA CTAGTA A T GG A G AC TGATGT TCA C T GTTGA C C TTATACATACATGT C CTATATAA TTAAATTTAG AG TATAAC TTA A C T CCG TTTATTGATAGCGAAAATTTTACAGT A AT AC ATG GCAACTTCG C T T TC GCT A G C CA GCATG AAGA A T G TTA GT AT GTACAAATG C A TTT AT TTGT T T T T A T T T AT A T AGTTACCAAGGACTATATATAGACTTGGAA AGAATGGTT CA AGGAA AT T T CA TGATA T G A A G GCCATTTTTTAT TTATC T T ATT TGA A C TCCT A AAAAAAAA TTTTTTTTTTTTTTTCTTCTT C A A AA GA GA T TTG T T C TGT C C T TA AT A AT C C GG TCG C A A AAG GG AACATTACAATATAATTATTGAT C C G T TT T C TGCT TT C TT T C CCAACTTGAAA C TAATTTCAAT GTGAAT CGACTTATATGAATTGTTTTCCTTGTTTGTAAGAGATCCCATCCTATCATACAACTTTG T G T CTT A GAGAAA C T T G CTACTG T C C TT AA TTT ATC TATT C T
blockSeqs : C . . A A AA A . AT . G . . AAT . A ATTGTACAGACAT T TATG CACATACA . AAAAT TT . . . TTC AGGGGGGAAAATTACAGTTGT G AT A ACG CT . . G . CA . . . . G AA A A . . . . G . T . . T . . C . C . . . . A . GTTACAA A C AGGAA AT . . A TGATA . G . . . GCCATTTT T A T ATT TGA T C C . . TTTTT C . . . . . . G . T . TGT . . . A . C AA C C . . C A A . . TGTTTTTC . C G T TT . C TGCT TT C . . C TTGAT T ATTTATTAT AAACA CTTTTGAATTTGAAGATCCATTCTAATATTATAGACATG . . C T . A T . C G . . . A . AG T . . . .
blockSeqs : T . . T G . . AC . G . . A . A ATAAACAGTT C TGTA TGTGAAC . TAT AT . . . CCA AGTACCATTAAAAATATTAAA G AT A ACG T . . C . G . . . . T AG A T . . . . T . C . . C . . T . C . . . . G . GTAACAG C A GGAT AT . . A TGAT . G . . . TATTGC C A C . TGA T . . . . TTTA . . . . . . . T . A . C . . . . . C A T . . . . A T . . TGTTTTTC . . A C T . A T T T . . C TTGAG C TTAATTAT GAAC TTTCAATATCCCATAACTATTTTGT . . T . . G T . A . . . . A . T T
blockSeqs : . . GA . . . . A . C ATATACAT G CAGA TTGTAT . TAT TA . . . CCG AGGAATGAAAA G AA A AA C . . G . G . . . . G AA G A . . . . T . G . . A . . G . T . . . . A . GTACAA C C GAAG AC . . A GACG . G . . . CTTTCG C C A . TAA A . . . . TTTA . . . . . . . T . T . T . . . . . T G T . . . . A A . . TGTT . . G C T . T T T T . . . TTGAG C TTAATAA AGAA CTTATGAATTTTTCTACTTGTCT . . . . . . .
blockSeqs : . . . . . . A . C ATAATT C TATG CACA . GGC TT . . . . AGGAAGGAAAT G A A CG T . . A . G . . . . G . G G . . . . C . T . . A . . T . C . . . . G . GTGCAG C A GGA A . . A TTA . T . . . AATCC C C T . AT A . . . . TTT . . . . . . . A . T . T . . . . . A G A . . . . A C . . CGTT . . A T A . A T A T . . . TTT C ATTATA TA
blockSeqs : . . . . . A AAAAC . AGA CAC . CAT TT . . . . ATCTTAAT . T T C T A . A . . . . . . . T . . . . T . G . . A . . A . T . . . . A . ATACAA C T GGA T . . . TA . . . . . . . C C . AT T . . . . TTT . . . . . . . G . G . T . . . . . G . T . . . . . T . . TGGC . . A C T . T T T . . . . AC
blockSeqs : . . . . . . . . . TT C . . . . . . A C . . . . . T . T . . A . . A . C . . . G . . . . . . . . . . . . . T . . TA A . . . . TTT . . . . . . . A . T . C . . . . . A . . . . . . . T . . T . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . . T . . . . . . . A . . . T . . . . . .
blockSeqCons : ATAACAT************* TATG****** AGGAAGGAAAATTAT********************* GGA***** TGATA* TGA** TTT********************* TGTT********************* TTGAN******* TTAATTAT**** C**
originalCons : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACAT-----ANACA-T-----TACATACACACACACTAT--G--ATATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTT-------A-GAAC----G-AAAATTTTACAG-T---AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGT----------TGT--TT-----T--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-ANGTGAATAGCCAT-AATT-ATAATTTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACC--TGT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
finalCons : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAACATAACAT-------------ACATACACACACATATG------TATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGGTTTAGGAAGGAAAATTAT---------------------AGGATTTTAA-GCAAAACGCTTTGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-G--ACA-T-TA-AG--TG----TATAA--TTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATTGGA-----ATATC-T-GAT-AAATATTGATA-AAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAATGA--ANGAG-TTC----AT-TTC--------CTTTTTTT---------------------TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATGTTGTT---------------------CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATATTGAN-------GTGAATAGCCATTAATTAT----TTTAAAA--AAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACCC--GT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|19 ): AGGTCATATCATTAGAATAATATGTAGTGGGGAAAAAATCAAAAGTATACATACGTACATACACACATATACATATATATACACAT
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 11 11 1 111111 111 111111111 3333333333333333333 111 11111 444444444444 22222222 1111111 8888888888888888888888888888 222222222 11111 1111 111111111 1111 0000000000000000000000000000000000000000000000000000 111111111 11 11111111 111111 2222222222222 11111 111 11111 1 1111 11111111 44444444444444444444 11 111 1 1 4444444444444444444444444444 1 1111111 333333 11111 1111111 111 000000000000000000000000000000000000000000000000000000000000000000000000000 11111 222222 1 222222 1 1 11 222 222 2222
lowQualScore : 1 777 888888 11 0 1 55 0 6 22 999999 666 4 4 999999999 4 888 66 8888888888888888888 3 222 44444 444444444444 66 11111111 55 666 5 8888888 0000000000000000000000000000 3 0 55 888 0 2 66 111111111 5 5 1 77 5 77 66666 99999 7 5 0000 00 66 66 777777777 5 1 777 66 3333 4 4 2 4 1 4 5 5 0 77 1 5 6666666666666666666666666666666666666666666666666666 999999999 00 33333333 22 5 5 55 0 111111 5 2 5 5 5 0000000000000 22222 0 0 3 7 0 777 88888 1 0 3333 4 66666666 66 00000000000000000000 8 4 4 66 66 66 4 777 4 2 4 66666 4 4 4 00 66 5 777 5 0 66 888 0 5 1 888 66 6666666666666666666666666666 5 0 2 0 1 777 5 1 0 1111111 666 4 77 6 9 000000 6666 55555 3333333 1 222 0 888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 11 0 55555 8 0 0 333333 3 0 1 2 222222 0 0 0 1 0 33 44 888 333 8888 6 7
lowQualScore : . ... ...... .. . . .. . . .. ...... ... . . ......... . ... .. ................... . ... ..... ............ .. ........ .. ... . ....... ............................ . . .. ... . . .. ......... . . . .. . .. ..... ..... . . .... .. .. .. ......... . . ... .. .... . . . . . . . . . .. . . .................................................... ......... .. ........ .. . . .. . ...... . . . . . ............. ..... . . . . . ... ..... . . .... . ........ .. .................... . . . .. .. .. . ... . . . ..... . . . .. .. . ... . . .. ... . . . ... .. ............................ . . . . . ... . . . ....... ... . .. . . ...... .... ..... ....... . ... . ........................................................................... . . .. . ..... . . . ...... . . . . ...... . . . . . .. .. ... ... .... . .
lowQualScore : 0 555 888888 00 2 0 77 6 7 77 222222 777 4 4 888888888 4 333 11 2222222222222222222 4 222 77777 666666666666 11 22222222 44 444 0 4444444 6666666666666666666666666666 4 1 88 888 1 5 99 000000000 7 7 0 99 7 11 44444 99999 6 0 8888 44 99 99 111111111 0 0 888 11 1111 4 4 6 4 9 4 0 0 4 99 4 7 1111111111111111111111111111111111111111111111111111 555555555 99 11111111 11 0 0 11 1 666666 0 5 0 0 0 9999999999999 00000 9 8 4 4 5 555 00000 0 0 9999 4 11111111 11 88888888888888888888 9 4 4 11 11 11 4 111 4 0 4 66666 4 4 4 66 11 3 000 4 0 99 888 0 1 0 888 99 4444444444444444444444444444 0 0 2 1 1 222 0 7 1 0000000 111 0 99 7 3 777777 9999 11111 1111111 8 333 3 333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 66 8 66666 0 8 6 222222 8 0 2 5 888888 2 0 0 0 2 88 55 888 333 3333 7 3
consensus : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAAC--AT------A---A-CA--T--ACATACACACACA---TAT---A-TATACATGTAC-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGG---TTTA--GGAAG-GAAAATT-----A------TAGGATTTTAAGCAA---AACGCTT--TGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-GACATTA-AGTG----TATAATTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATG-------------------TTGTTTT--CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-AN-GTGAATAGCCA-TTAATT----AT-TTTAAAAAAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACCC--GT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
Reference ( family-1438 ) : ACGTNAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTN-AACAATAGAATANGCCGAGAAAGAAAAATCAACCGGAAACAATA-AACA------AGAGA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAAC--AT------A---A-CA--T--ACATACACACACA---TAT---G-TATACATGTAT-TG----T-AC-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTACCGG---TTTA--GGAAG-GAAAATT-----A------TAGGATTTTAAGCAA---AACGCTT--TGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTNA--ATGTT-GACATTA-AGTG----TATAATTAGGATNTC-CATAT---AACAA--TAAC--TCAAGT-------T-CAGG-TTGATANTCATTACTA---GTAATATTCTGTATAG--ATTGAA---NA-AG-TGTANTTC-TAGAAGCTGCATA-TTTAGAACAGA-TAAAAAA-GTAATGATACGCA--TCTTCGA-TAAAATCA----------------G-TA--------------------CA-AAC--GG--TTC--------CCACA-NATT--GG--A-ATATC-T-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-A-TTGC-TAGCAT--CATTT----C-TTAT----CTGACAATGTATTATATTATACCGACGTTC---TCCAAAA-TGA-ANGAG-TTC----AT-TTC--------CTTTT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTN--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TNAAT-A-TAGTCCGGCA-AGTTGTTCCATT--GTTC---GACAGTG-GAGGGAAAAAAAGCTTTCCANGTA---T--GATG-------------------TTGTT----CT-AATA-TGAGGGATTTTGAACTG-T-AAAGTA-CCAGTTCGAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGGTTTCA--TCAAAA-TCGTACAAATA------TTG-AN-GTGAATAGCCA-TTAATT----AT-TTTAAAAAAC-AACAATAAC------------TTGT---TTTCCTTG--TTTGTA--A-GATCCCATCCTA--A-TA----TT-------T-G-AGCG-AGA-AGAATTACATCTTAAACCC--GT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTGGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCANACAACATCCGAGTA--TTCAAGTACAAGTC-TTAACAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|1 : ACGTAAAGGTC---ATGTA------AGTCATATCATAGAAAGACTTCAACAATAGAATATGCCGAGAGAAAAAAATCATCC--AAACAATA-AACA------AGACA---A-AAGA-ATAA----A--CAAAAGAA-AATCTAAAC--AT------A---AACA--TT-ACACACACACACAC--TATTAGA-TATACATGTAT-TG----TTAT-TACATACAT--AT---A--CAAATT-ATATT-T-A-GTATCGG---TTTA--GAAC---AAAATTTTAC-AGC----TAGGATTTTAAGCAA---AATGCTT--TTTTA------T--TGCAATGCAAGCATGTACTG-CTTCAAATA-TCTTA--ATGTT-GACATTA-AGTG----TATAATTAAGATATC-CATAT---AACA---TAAC--TTAAGT-------T-CAGG-TTGATGTTTATTACTA---GTAATACTCTGTATAG--ATTGAA---TA-AG-TGTACTTC-TAAAAGCTGCTTA-TTTAGAACAGA-TAAAAAA-GTAATGATACACA--TCTTCAA-TAAAATCA----------------G-TACCAAGCTAATTAGATTGAATCAGAAT--GG--TTC--------ACACA-CATA--GG--A-ATATC-T-GAT-AAATATTGATTAAAA-AGATCTGAATTAAG-A-TTGC-CAGCAT--CATTT----T-ATAT----CTGACAATGTATTTTATTATACAAATGTTC---TCCAAAA-T---ATGAG-TTC----AT-TTC--------CTTTT--TT---------------------ACAAAA-AT-AA-GAATTT--AG--GA--CTC-TTT--AA-AGATGA-ATT--T--CCTGAAG-C-A-TT--T--TTAAT-A-TAGTCCGGAA-AGTTGTTCCATT--GTTT---GACAGTG-GAGGGAAAAAAAGTTTTCCAAGTA---T--GATG-------------------TTGTTTT--CC-AATA-TGAGGGATTTTGAATTG-T-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---T---TGGTGGACGG-T-AGGATTTCA--TCAAAA-TTGTACAAATACCAACTTTG-AAAGTGAATAGCTA-T-AATTCATAAT-TTTAAAAAAC-AGCAACAAG------------TTGT---TCTCCTTG--TTTGTA--ACGATCCCATCCTA-----------T-------T-G-AGCG-AGA-GGAATTACATCTTAAACCT--GT-TATTATTATGG-----CTGCTTCAACTTGAATGCCTTCTA-ATAATTTAGAGTCTACTGTCTTTTTCTGAGCAA-TTAT-CCCACACAACATCCGAGTA--TTCAAGTACAAGTC--TAATAAATGCCTCATTTATCTTA---AGTGTTTCAC----AGTTCACCTTATACTTCAGCATTCAAAGAATATTT
gi|10 : TTT----C-TTAG----TTGACAAAG-A--ATATTATAATGA---TT---TCCAAAG-TGA-TAAAG-TCCC---ATACTT--------TTTTT--TT------------------T-TACCGAA-AT-AG-GAATGTAAAA--GA--CTC-TTG--AATAGG-GA-TAT--C--CCATAAG-C-A-CT--T--TAAgtgcttgatagttgtgacagtgttttca
gi|11 : ctgtatttaaaaactcttgACGTAAAGGTCCTAGTATACTAGTAAGTCATGGTATAAAAAGAGTA-AATAATAGAATATGCCGAGAAAGAAAAATAAACCGGAAAC-AT--AACG------AGGGG---A-AAGATAT-----------AGAGAA-AATCAAAAC--AT------A---A-T---T--ATATACA-AGACA----AG---A-TATAGACGTATGTG----A-AC-TATACATAT--AT---A--TTAA-C-ATATT-tgaaaatttctatataggttaaagttcaaatttgaggaagtttgaattgaacgttagtaat
gi|12 : aAGA---A-AGAA-ATAA----A--CAAATGAA-AAT--------AT------G---A------------ACACACACA---TAT---G-TATACATGTAC---------AC-T---TACAT--A---------AAT----------A-GTACCGG---TTTA--GGAAT-GAAAA---------------AAAA--TTAAACAA---AAA----------G------T--TGCAATGTA
gi|14 : cataaaggtcatatacaataaaatatgatgtgcacACAATAGAATATGATGTAGAGAG--A-AAGA-AAAA----AATCAAAAGAA-AATATGAACTTAT------ACATA-CA--TGTACATACATACACA---TGT---A-TATACATGTACACA----T-ACATACATACATAGAT---A--TAAATT-ATGTT-T-A-GTA
gi|15 : tgaaggttatatTA------TTG-AT-GCGAGTGGCCAATTTATT----AT-TTTCACGAAC-AATAACTAC------------TT----------TTGAATTTG-A--A-GAT-CCATTCTA--A-TA----TTATAGACAT-G-AACGTAGA-AGAA-TACTTCTTAAG-CC--GTATATTAGCCTAA-----CAGCTTCTACTTGAACGTC
gi|16 : GGACTAC-CGTAT---AATAAGTTAACATTCATGT-------G-TAGG-TTGTTGATCATAGCCATTTGTAATTTCCAGTATGG--CTTGTA---TC-AA-TGTATTTC-TACAATATGTATA-CTTTGGACAAA-CAAAAAA-GTAATGATAAGCA--TTTCCAA-
gi|17 : ACATCAAGGTC---ATATA------GGTCGTGGTATAGAAAGAGTA-AACAATAGAATAAGCTGAGAAAGAAAAATCAACCAAAAAC--TA-A--A------AGAAAG--A-AAGA-A-----------AAAAAAA-AATCCAAAA--AA------A---ACCA--T--ACATa
gi|19 : GGGG---A-AAAA-AT---------CAAAAG-------TATAC--AT------ACGTA-CA--T--ACACACATATACA---TAT---A-TATACAg
gi|2 : aggtcatatcattagaataatatgtagtATA-AACA------AAAGATCAACAAGA-ATAA----A--CAAAAGAACAATCTAAAC--AT------A---AACAGTT--ACACACACACACACTATAT---AATATACATGTAT-TG----T-AT-TACATACAT--ATATAA--CAAATTAATATT-TCA-GTATTCGTCTTTTATTGATAGCGAAAATTTTACAG------TAGGATTTTAAGCAA---AATGCTT--TTTTAC-----T--TGCAATGCAAGCATGTACTGCCTTCAAATATTCTTA--ATGTT-GACATTACAGTG----TATAATTAAGATATCGCATA----AAC-A--TAAC--TTAAGT-------T-CAGGCTTGATGTTTATTACTA---GTAATACTCTGTATAGATATTGAATTGTATAG-TGTACTTCTTAAAAGCTGCTTATTTTAGAACAGATTAAAAAA-GTAATGATACACA--TCTTCAATTAAAATCAAGTTACCAAGGACTATA-TA--------------------TA-GACTTGGAATTCAGAATGGTTCACACAATTAGGA--A-ATATCTT-GAT-AAATATTGAT-AAAA-AGATCTGAATTAAGAA-TTGC-CAGCATGCCATTTTTTAT-TTAT----CTGAC-ATGTATTTTATTATACAAATGTTCATTTCCAAAA---ATATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACATAAA-GAACTT--AG--GA--CTC-TTT--AA-AGATGG-AATTGT--CCTGAAGCC-A-TTTAT--TCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATG-------------------TTGTTTTTCCC-AATACTGAGGGATTTTGAATTGTT-AAAGTA-CCAGTTCAAAGATTGCAAGAATGAGTGCT---TAGTGGACGGTT-AGGATTTCA--TCAAAA-T-GTACAAATACCAAC-TTGAAA-GTGAATAGCTA--TAATT----cat
gi|2 : c-AAT--GG--TTC--------ACACA--ATT--AGGAA-ATATC-TTGAT-AAATATTGAT-AAAA-AGATCTGAATTAAG-AATTGC-CAGCATGCCATTT----T-TTATTTATCTGACA-TGTATTTTATTATACAAATGTTCATTTCCAAAAAT---ATGAGCTTC----AT-TTC--------CCTTT--TT------------------TACACAAAACAT-AAAGAACTT--AG--GA--CTC-TTT--AA-AGATGG-AAT--TGTCCTGAAG-CCA-TT--TATTCAAT---TAGTCCGGAACAGTTGTTCCATT--GTTC---GACAGTGCGAGGGAAAAAAAGTTTCCCAAGTA---T--GATG-------------------TTGTTTTTCCC-AATACTGAGGGATTTTGAATTG-TTAAAGTA-CCAGTTCAAAGATTGCAAGAATGAG---TGCTTAGTGGACGG-TTAGGATTTCA--TCAAAA-T-GTACAAATA------CCA-AC-TTGAA-AG----TGAAT-------------------AGCTATAA--------------------TTTC-----------A--A-TATCCCAT---A--ACTA----TT-------TTGTAGCG-AGAGAGAATTACATCTTAAATCCTTGT-TATTATTATG------CTGCTTCAACTTGAATGCCTTCTA-ATAATTAGGAGTCTACTGTCTTTTTCTGAGCAATTTATCCCCACACAACATCCGAGTATTTTCAAGTACAAGTCTTTAATAAATGCCTCATTTATCTTA---AGTTTTTCAC----AGTTCACCTATTAC-TCAGCATTCAAAGAATATTtcaatatcccataactattttgtagcgagagagaattacatcttaaatccttgttattattatgctgcttcaacttgaatgccttctaataattaggagtctactgtctttttctgagcaatttatccccacacaacatccgagtattttcaagtacaagtctttaataaatgcctcatttatcttaagtttttcacagttcacctattactcagcattcaaagaatatt
gi|20 : cataaacaaaagatcaacaagaataaacaaaagaacaatctaaacataaacagttacacacacacacactatataatatacatgtattgtattacatacatatataacaaattaatatttcagtattcgtcttttattgatagcgaaaattttacagtaggattttaagcaaaatgcttttttacttgcaatgcaagcatgtactgccttcaaatattcttaatgttgacattacagtgtataattaagatatcgcataaacataacttaagttcaggcttgatgtttattactagtaatactctgtatagatattgaattgtatagtgtacttcttaaaagctgcttattttagaacagattaaaaaagtaatgatacacatcttcaattaaaatcaagttaccaaggactatatatagacttggaattcagTACTCATTACTA---GTAATATTCTATATAT--ATTGAA----A-AG-TGTATTTC-TAGAAACTGCATG-TGCAGAA
gi|21 : gtACATTAAGGTC---GTATA------GGTCATGGTATAGAAAGAGTT-TAGAAAAGAATGGGTTGAAAAAGAAAAa
gi|3 : aA---A-AAGA-ATAGGTTGA--GAAAGGAA-AA---ATAC--ATTGTACAG---A-CA--T--GCATACAGACAGA---CAG---A-CAGACATTTAT-TAAATTT-AG-TAC-TAAAT--AG---G--CAAAAT-ATTTT-T-ATGTA--------TTA-------------TC-----T------TAATATTTTA----------CGTTT--TGTTG------C--TGCAATGTAATCATGCACTG-ATTCAAATT-TCTGA--ATATT-GATATTT-AGTT----CATAGCTAGGACTTC-CATATTTAAATAA--TAAC--CCAAGTGTACAAATGTAGG-TTGAAAGTAATTGCTA---ATGATATTTTGTATA--------A---CA-TG-TGT--TTA-TAGAAG-TGAATT-TTAAGAACAGA-TTAAAAATGTAATGACATGCA--TCTCCGA-TAAAATCA----------------G-TA--------------------CA-A--------TTC--------CCACA-CATT--GG--A-GTA-----------AT-TT--T-AAAA-A-AT-TGAATTATG-A-TTGC-TAGCAT-----------------------GACAATGTATCATA-----CCGACGTTC---TCCAAAA-TGA-AAGAC-TTT----AT-TTC--------CTTTT--TTTTTTTTTTTTTTTCTTCTT-TACAAAA-AT-GA-GAATTT--TG--GA--CTC-TTTTGAA-TGAAGA-AAT--T--CTAAAAG-T-A-TT--T--TTATT-A-TATTCTGGCA-AGTTGTTCCATT--GTTT---GAGAGTG-GAGGGAAAAA--GCTTTCCATATA---T--GATG-------------------TT-------CT-AATA-TGAGGAATTTTAAACTG-T-AAAGTA-CCAGTTTGAGGATCGAAATAATGAG---T---TGGTGGACGA-T-ATGGTTCTA--TCAAA--TCGTATAAATG------TTG-AG-GTGAATAGTCA-TTAATT----AT-TCTAAATA-----CAATAAC------------TTATGAATTTTTCTA--CTTGT--------------CT-------------------------GTA-AGA-AGA-TCCCATCCTA-------GT-T--TACCACAGAGAAATTGCATCATCTTAAA--CCTGTTATCCAATTTGAAGT---------TTTTCTGAGCAA-ATAT-CCCAAACAACATGAGAGTA--TTCCAGTACAGGTC--TAACAAATGCCAAATATATCTCAATCAGTGTTTTCCTATTATTTTAC--TATACTTTAACATTCCAAGAATATTT
gi|4 : cACATACAT--AC---A--TAAATA-ATATCAT-G-GTACCAG---TTTA--GGGGG-GAAAATT-----ACAGTTGTAGGATCTTAAACAA---AACGCTT--TGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTCA--ATGTT-GACATTA-AGT------------AGGATATC-CATAT---AACAA--TAAT--TCGAGT-------T-CAGG-TTGATATCTATTATTA---GTAATATTCTGTATAG--ACTGAA---AA-AG-TGTAGTTC-TAGAAGTTGCGTA-TTTAGAATAGA-CAAAAAA-GTAATGATATGCA--TCTTCAA-TAAAACCA----------------G-TG--------------------CA-------G--TTC--------CCGCA-ACTT--------------T-GAT----------T-AAAA-AGACCTGAATTAAG-A-TTGC-TAGCAT--TATTG----C-TTAC----CTGGCAATGTATTATATTATACCGAAGTTC---CCCAAAT-TGA-AAGAG-TTA----AT-TTC--------CTTTT--TT------------------T-T-CAAAA-AT-AA-GAATTT--AGGAGA--CTCTTTA--AA-AGATGA-AAT--T--CCAGAAG-A-ATTT--T--TAAAT-ATTAGTCTGGCA-AGGTGTTCCATT--GTTT---GACATTG-GAGGG--AAAAAGCTTTCCAAGTA---T--AATG-------------------TTGTT----CT-AATA-TGAGG----------------AAGTA-CCAGTTCGAAAATTGTAAGAATGAC---T---TGATGGAGGA-T--GGGTTCTA--TC-AAA-TCATACAACTA------TTG-AG-GTGAGTAGCCA-TTAA-T----AA-TTAAAAAAACAAACAATAACGACTTATATGAATTGT---TTTCCTTG--TTTGTAAGA-GATCCCATCCTATCA-TACAACTT-------T-G-AGCG-AGA-AGAATTGCATCTTAAACCT--GT-TATTATTCTGG-----CTGCTTCAACTTGAATGTCTTCTA-AAAATTTAGA--------TTTTTTTCTGAGCAA-TTGT-CCCAAACAACATCTGAGTA--TTCAAGTAT-TGTC-T--ACAACTGCtttaaaacttattgtagccttttc
gi|5 : cGGATTT-AAGCAA---A-C-CTT--TGTTGGCAACTTCGTGCAATGTAAGCAT-TA--G-CTTCAAATA-CGTGA--ATGCCCAACGTTA---TG----TAT---T-GGAT-TC-CATAC---AA--A--TAAT--TCAAAT-------C-CAGG-TTAATAGTCTTTACTA---GTAATATTATGTATAG--ATTGAA---AA-GGTTGTATTTC-TAAATGC-GCATA-TTTAGAAC-GA-TAAAAAA-TT-ATGATATGCGATTCTTCGA-TAAAATCA----------------GTTA--------------------CA-A--------TTC--------CCACT-CTTT--GG--ATATATC-T-GAT-AAACATTGAT--AAA-AGATCTTAA--AAG-A--TGA-TAGTA----AATC----C-TTAatata
gi|5 : C----AT-TTT--------GTTTT--T---------------------------A-AT-AA-GAGTT---AG--GA--CTC-TTG--AA-AGATGACAAT--T--CCAG-AG-C-A-TTA-T--TGAATAA-TAGCC--GCA-AGCTGTTTCATTGGGTTCTCGGACAGTG-AAGAAAAATAAAGCTTTCTACATAAAGC--AATGTAACATTACAATATAATTATTGAT----CTCAATA-TTA-GGATCTTG-GCTG-T-AAAGTCTCCAGTTCGAAGATTTAAAGA--------T---TGGTGGATCA-A-AAGATCT-ATTTTAAAATTCATACAAATA------TT---T-GTGAATGGC------ATT----ATATTTAAAAGAA-AACAAAAAC------------gcacattttgtttttaataagagttaggactcttgaaagatgacaattccagagcattattgaataatagccgcaagctgtttcattgggttctcggacagtgaagaaaaataaagctttctacataaagcaatgtaacattacaatataattattgatctcaatattaggatcttggctgtaaagtctccagttcgaagatttaaagattggtggatcaaaagatctattttaaaattcatacaaatatttgtgaatggcattatatttaaaagaaaacaaaaaccaa
gi|6 : ggatttaagcaaacctttgttggcaacttcgtgcaatgtaagcattagcttcaaatacgtgaatgcccaacgttatgtattggattccatacaaataattcaaatccaggttaatagtctttactagtaatattatgtatagattgaaaaggttgtatttctaaatgcgcatatttagaacgataaaaaattatgatatgcgattcttcgataaaatcagttacaattcccactctttggatatatctgataaacattgataaaagatcttaaaagatgatagtaaatccttagcaACAGAA-AGAA------AGAAA---A-ATAA-ATAA----A--CAAAAGAA-AACATGAAC--AT------AT--A-CA--T--ACATACACACACA---TAT---G-TATACAT-----------------ACATAGAT--AT---T----AATT-ACATA-T-A-GTACCGG---TTTA--GGAAG-GAAA---------------TAA---TTTATACAA---AACGCTT--TGTTG------T--TGCAATGTAAGCATGTACTG-CTTCAAATA-TCTAATCATGTT-AACATTA-AGTGCATGTATAATTGGGATGTC-CATAT---AACAA--TAAT--TCTAGT-------T-TAGG-TTGATATTTATTACCA---GTAATAATCTGTATAG--ATTGGA---AA-AG-TGTAAATC-TAAAAGTTGCATA-TCTAGAACAGA-CAAA-----TAATGATACGCA--TCTTCAA-TAAAATCA----------------G-TA------------------------AC--AG--TTC--------CCACA-AACT--GA--AGAT-TC-T-GAT-AAACAT--------------CTGAATTAAG-G-TTGC-TGGCAT--TATcaa
gi|7 : cataaaggtaatatacaatagagcataatgtgcTCA----------------A-TA--------------------CA-A--------TTT--------GTACA-TATT--GG--A-GTACC-T-GATCAAATAT-GAC-GATATATATCTGCTTTCAA-G-TTACGTGACCT--C-TTT----CGTTGT-----TGGCAATGCATTATATTAAATCGATAATT---TC---AA-T-A-ATTAC-TTC----TT-TTT--------TTTTTTTTT------------------T-TACAGAA-AT-AG-GAATAT--A---AA--CTC-TTA--CA-TGAGGA-TAT--C--CAAGAAG-C-A-TT--T--T-AAG-G-TCATCAGGCA-GGCTGTCCCATT--GCTT---AACAGTG-GA---AAGAAGGGATCTTTATATA---TGGGATG-------------------ACGTT----CT-AATT-CGAGGAAGTTTGAATTG-A-ATGGTA-TTAGT
gi|8 : tgattacggccttgg-TTAT----CTGACAATGCATTATATTATTCTGACGATC---TACAAAA-TAA-AAGAT-TTTTCCTAT-TTTAAAAAAAATTATT--TT------------------T-TACAAAA-AT-AA-GAATTT--AG--GAGACTC-TTA--AA-AGATGA-AAT--T--CCAGAAG-C-A-TT--T--TAAAT-G-TAGTATAGCA-AGTTGTTCTATT--GTTT---GACAGTG-GAGGGATAAA--GCTTTCCATATA---T--GATG-------------------TTGGC----CT-AATA-TGAGGAATTTTAAACTG-T-AAGGTA-CCAGTTCAAAGATTGTATATGTAAG---T---TGGTGGACGA-T-AGGGTTTTA--TCA
gi|9 : gA---TAT---A-TATACATGTAC---------ACATACATACAT--AA---AAATAAATT-ATATT-G-A-GTA-------TTTA--GTACC-----ATT-----A-------AAAATATTAA--AAGGTAACGCTAAATGTTG------C--TGCAATGTAAGCATGT-CT-------AAGA-TTGGA--AT-TT-G-CA------------TATAA---------------------CAA--TAAT--TCAAGT-------T-CAGG-TTGATAGTCGTTACTG---GTAGTATTTTGTATAG--TTTGAA---AA-AG-TGTAATTC-TAGAAGCTGCATA-TTTAGAACAGT-TGAAAAA-GTAATCATAt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCCAATACATTTGGTCATACTGGGTGTATCTATATAACTGTGATGATACAAATCTGCATTTAATTTACTTGTGACTGTGGTTCTTAGTTGACAGTGTATAACATTATATCGTCGACTTCCAAAGTGAAAATCTTTATTTTTT
Unaligned ( gi|18 ): TTTTATACAAACAACCAGGAATTCAAAAGACCTCCTGTTTGAAAAAAGACCAAGTAGGCATTTCATTGTCATCAGGCAGCCCATTTGTTTAATAGTGGAAGGA
Unaligned ( gi|22 ): AGACATGCATACAGACAGCAGACAAATATTTATCAAA