lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 222222222222 1111 2222 888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 2 1 1 444444444 22222222 2222 33333333333 111111111111111 111 111 1111 1111 1111 11 1111 11 1111 1 22222 111 11 22 1111 44444444444444444 33333333 11 11 11 1111111 11 22 111 2222222222 44444444 33333333 111 111 111 111 22222 111 22 22222 222
lowQualScore : 88 444 5 0 5 99 999999999999 5 5 5 4 777 4 4 2222 4 8 2222 66 4 000000000000000000000000000000000000000000000000000000000000000000000000000000 55 777 888 4 8 4 2 9 4 5 4 4 777 0 5 5 444444444 5 5 55555555 5 4 5555 5 5 22222222222 0 888888888888888 6 6 666 5 888 5 5 000 2222 5 4 77 2222 4 5 0000 5 11 5555 9 11 5 777 5 0 3 77 0000 1 5 88888 000 33 99 77 5 5 888 66 5 8 4 4 5555 66 00000000000000000 55 4 4 1 4 4 4 4 55555555 66 00 4 4 4 66 8 66 66 00 00 7777777 4 8 4 4 00 4 11 8 4 7 66 8 222 4 4 9999 6 1111111111 77777777 99 8 55 4 4 99 8 66666666 222 4 111 4 4 55 44 111 4 000 4 55 4 4 00000 4 99 4 4 4 8 55 4 4 1 111 55 00 4 66666 9999 3 0 7 666
lowQualScore : .. ... . . . .. ............ . . . . ... . . .... . . .... .. . .............................................................................. .. ... ... . . . . . . . . . ... . . . ......... . . ........ . . .... . . ........... . ............... . . ... . ... . . ... .... . . .. .... . . .... . .. .... . .. . ... . . . .. .... . . ..... ... .. .. .. . . ... .. . . . . .... .. ................. .. . . . . . . . ........ .. .. . . . .. . .. .. .. .. ....... . . . . .. . .. . . . .. . ... . . .... . .......... ........ .. . .. . . .. . ........ ... . ... . . .. .. ... . ... . .. . . ..... . .. . . . . .. . . . ... .. .. . ..... .... . . . ...
lowQualScore : 88 666 0 8 7 33 666666666666 0 0 0 4 888 4 0 5555 0 0 8888 11 4 222222222222222222222222222222222222222222222222222222222222222222222222222222 22 888 333 4 9 4 2 1 4 7 4 4 111 0 0 0 000000000 7 7 33333333 7 3 7777 7 7 99999999999 3 333333333333333 7 7 666 7 666 7 7 000 1111 7 3 99 1111 3 0 6666 0 99 5555 4 99 0 444 0 1 6 99 7777 4 7 66666 000 66 44 99 7 7 888 99 0 9 4 4 1111 11 11111111111111111 66 4 4 1 4 4 4 4 33333333 11 66 4 4 4 33 9 11 11 66 66 4444444 4 9 4 4 66 4 11 9 4 3 11 9 222 4 4 4444 3 2222222222 66666666 55 0 55 0 0 55 0 55555555 111 0 000 0 0 55 88 000 0 333 0 55 0 0 55555 0 55 0 0 0 0 55 0 0 6 000 55 33 0 00000 5555 6 5 3 666
consensus : GTCATA-AGGAAAGAATCCCATTTGTAACA-TTNATATGA----TC---TAACTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------TGAA-----------------TA-----------------AT----------------C-CT-AGAA-AA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC---NA--CATTGCTCCGCG-TTC-TTC-G-A----T-CGCTGCTG---CCGT-TGT-CATA--GGA-TC-ATTAT--A-AA-A---TA--T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG---CCTTT---TAG--ACCA-TT--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------CA-G------AGTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTACAATTTGGCCC--TC--AA-AGC-GA-G-AAT-ATCGT--A--C--TTTT--CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAG-GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--------CTCTGCTC--AT-GCTTT--G-TTTA--TCT-GACTTTTG-TTCT--GT-AC---A----TTTTTTTG--NT-AC---A-AATA-AT--CC-TTT---AAAT-ATGCA--AA-AT--A-AC-AAAC--TTCAAA-TA--GG-TACC-AT-C-A--TT-AGC-CGCC---TA--CC-ACT-TATGCTC-C--GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-TACACGGC
Reference ( gi|5 ) : GTCATA-AGGAAAGAATCCCATTTGTAACA-T-AATATGA----TC---AAGCTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------TGA------------------TA-----------------AT----------------C-TA-AGAA-AA---C---TT-TT-GT-TTGGCGTTTAATGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC---CA--C-TTGCTCCGCG-TTC-TTC-G-A----T-CGCTGCT----CCGT-TGT-CATAT-GGA-T--ATTAT--A-AA-A---TA--T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG---C-TTT---TAG--ACCAATT--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C--G------AGTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTACAATTTGCGCC--TC--AA-AGC-GA-G-AAT-ATCGT--A--C--TTTT--CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAA--GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--------CTCTG-TC--A--GCTTT--G-TTTA--TCT-GACTTTTG-TTCT--GT-AC---A----TTTTTTTG--GT-AC---A-AATA-AT--CC-TTT---AAAT-ATGCA--AA-AT--A-AC-AAAC--TT-AAA-TA--GG-TACC-AT-C-A--TT-AGC-CGCC---TA--CA-ACT-TATGCT--C--GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-ATTACACGGC
gi|3 : GTCATA--GGAAAGA-TTCCATTTGTAACA-TTAATATGA----TC---TAACTCT-G-CC-TCGCT-GTTCACAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAAATGAAATAATACAATTGAA-----------------TA-----------------AT----------------C-CT-AGAA-AA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCC-C-ATTT-T-A-A-T-TC---AA--CATTGCTCCGC--TTC-TTC---A----T--GCTGCTG---CCGT-TGT-CATA--GGA-TC-ATTAT--A-AA-A---TAT-T-G-CT--CCATGG-TTA-G-C-GGAC-CGT---AAA----T-TTTCT--C----ACCGGTCA-T----TTGTTA--TTTTT--C--AAGTGGTT-GGACAAAA-TGA-GCAGAGT--T---TGGT-GT-AGC--C-TTT---TAG--ACCA--T--TATC-AAAGACATAATGCAT--G-GG-CTA--A-AA---CTGCCGT--AAA-------CA-G------AGTA-CGAATACT-A-CAAGCCAC-A-TAA-AGTAC-ATTTGGCCC--TC--AA-AGC-GA-G--AT-ATCAT--A--C--TTTT--CC--AAGC-A-AAGTTT-C-AAC-G-ATCGGAAAG-GG-C-TAC-TGAAA--AATTGC---TTTG-TCTATT--T----ACAAAAAAATGT---------CTCTGCTC--AT-GCTTTA-G-TTTA--TTT-GAC-TTTG-TTC---GTCACACAA----TTTTTTTA--AT-AC-----AAT--AT--CC-TTT---AAAT-ATGCA--AA-AT--A-AC-AACT--TC-AAA-TAG-GG-TACC--T-C-A--TT-AG--CGCC---TA--CC-ACT-TATGCT-----GT----GCATC-CGGATCCCTCCGCGGGCGTACGGATCGGGAATAACACGGC
gi|2 : gtGTCATA-AGAAAAGAATCCATTTTGTAACA-TTAATATGA----TTTCTACACTCT-G-C--TCACTTGT---CAACC-ATTT-C----GTC-TTGCA--ATGGAAA--CTTAAGAAA---------------TGA------------------TATAAGTTAGCATGAAATAAT----------------CCTA-AGGACAAGGGC---TT-TT-TTGTTCGCGTTTA-TGA-GTATATTTTATCCACCGTTT-T-GCA-C-TC---CAAACATTGCTCCGCG-TTC-TTCCG-A----T-CGCTGCT----CCGTGTGTTCATAG-GCA-TC-ATCAT--G-AA-AATATA--T-G-CTTACCGTGGATTATG-C-GGAC-CGT---AAGAGTCT-TCTCT--C----ACCGGT-A-T----TTG-TA--TTTTT--CAAA-GTG--TAGGAC-AAA-TGAGGCAG-GT--TTTCGGTT-GT-AG---C-CTT---TAG--ACCA-TT--TATC-AAAGACAT-AT---T--G-GGGCTA-CA-AAA--CTGCCGTTAAAA-------CCAG------AGTA-CGAATACT-A-CAAGC-AC-AAT-A-AGTACA--TTG-GCC--TCCAAA-AGC-GAAG-AATGATCGT--A--C--TTTT--TCCAAA-C-A-AAG-TTTC-AA--GCATCGGAAA--GG-C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T-----CAGAAAAATGTAACTCTTGGCTCTA-T------GATTT--G-TTTAACTCA-GGCTTTTG-TCCCTGGT-ACCA-A----TTTTTTTC--TT-AC---A-AATA-ATAACC-TTTTTAAAAT-ATGCA--AATTT--A-ACGAAACGTTC-AAA-TACCGG-TACC-AT-C-AATTT-AGC-CGCC---TA--CC-ACT-TATGCTC-C--GTGG--GCATC-CGGAATCCTCCGC-GGCGTACGGATCGGA---TACAt
gi|4 : tgGTCATA-AGGAAAGA---TCATT-GCAACA-T-TAGATGAGTGATCGT-AAACTC--G-CCGTCA-T-GT---CACCG-ATTTGT----GTC-TT-CA--TCGGAAA--CT-AAGAAA---------------TGGAAATAATTACAAATGAAGTA-----------------AT----------------C-CT-AGAA-AA---TCT-TT-TT-GT-TTGGCGTT--ATGA-GTT------ATACAC-ATTT-TGA-A-TGTC---AA--CATTGCTCCGCGGTTC-TCG-G-A----TTCGCTGCTGG--CGGT-TGT-CA-ATAGGA-TCAATTAT--A-AA-----TA--T-GGCTC-CGTTGG-TTA-G-G-GAAC-CGT---ACA----T-TTTGT--C----AC-GGTCA-T----GTC-TAA-TTTTT----AAAGTG--T-GGAC-AAAATGAGGCAGAGTGTT---GGG--GT-AG---CCTTT---TAG--A---ATTCTTATC-AAAGACAT-AT---T--G-G--CTA-CA-AA----TG--GT--AAC-------A--G------AGTA--GAATACT-A-CAAGCCAC-A-T-G-AGTAC-ATTTGACCC--TC--AA-AGC-GA-G--AT-AGCGT--A--CTTTTTT--CCA-AA-CAA-AAG-TT-CGAA--G-ATCGGAAAG-GG-C-TACTTG-AA--AA-TGCCTGTTGG-TCTATTAGT----ACAGAAATATGTAAC------TTCTGCTC--ATGGCTTT--G--TAA--TCT-GACTTTTGTTTCT--GT-AC---A----ATTTTTTGCAG--ACAAGA-AATA-AT--CC--TT---AAAT-G---A--AA-AT--AGAC-AAAC--TTCAAA-TA--GGTTACCGAT-C-A---T-AG--CG-C---TA--CGTACTGTACTCT--C--GT----GCATC-CGGATCCTCCTGC-GGCGTACGG
gi|1 : gtGTCATACAGGAAAGAATCC-ATTTTTAACA-TTAATATGAA---TC---TAACTCT-G-CC-TCACT-GT---CAACCCATTT-CA---GTC-TT-CA--T-GGAAAGTCT-AAAAAA---------------TAAAA----------------TA-----------------ATAACAAATGACAAAATCC-TA--GAA-GA---C---TTGTT-GT-TTTGCGTTTA-TGACGTGTATTT-ATCCAC-ATTTGT-ATA-T-TC---AA--CATTGCTCCGCG-TCT-TTC-GGA----T-CGCTGTCGTACCTGC-TTT-CA-AC-AGAGT--ATCATTCATAA-A---TGATT-G-CTC-C-GTGG-TTA-GTC-GGACTCGT---AAA----T-TTT-T--CTTCGACCGGGCT-C----TTG-TA--TTTTCAACAAGAGTG--T-GCAC-AAA-TGAGTCCGAGT--T---GAGTTGTCAGATCC-TATCCATAGGAACCAGGT--TATC-AAA-ACAT-AT---TCCA-GG-CTA-CA-AAGACTTGCCGT--AAAAGCTAAGC--GGAAGTTAGTAGCGAAGACTTA-CAAGCCAC-A-T-ATAG-GCGATTTTGACCCATC--AACAAT-GA-G-AATTATCTTTAA--C--TTTT--CC--AA-G-C-AAG-TT-C-AA--G-ATCGGAAAGGGG-C-TACTTGAAAGCAACTGCG--TTTG--CCATTA-T----ACAGAAAAATG-A--------CTCTGCTC--A--GCTTT--G-TTTA--TCT-GA--TTTG-TTCTG-GTAAT---ATTTTTTTTTTTT--GT-ACA--A-AATA-AT--CCTTTT---AAGT-ATGCATGAA-ATTAG-AC-AAAC--TTCAAA-TA--GG-TACC-AT-C-A--TT-AGCTCGTCGATTC--CC-AC--TAGGCC--C--TT-GGAGCATCGCGGATCCCTCCGC-GGCGTA-GGA-CGGG-ATTACACGGgcg
gi|15 : GTCATA-AGGAAATAAT-CCATTTGTAACATT-AATATGA----CC---TAACTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-g
gi|6 : gtAACA-T-TATA-GA----TC---TAACTCT-GGCC-TCACT-GT---CAACC-ATTT-C----GTC-TTTCA--T-GGAAA--C--AAGAAA---------------TGAACATAATACAATATGAA-TA-----------------AT----------------C-CCTAGAA-AA---C---TT-TT-GT-TTG-CGTTTA-TG-----TATTT-ATC-AC-ATTT---A-A-T-TCAAACA----TTGCTCCGCG-TTC-TTC-GGA----T-CGCT-CT----CCGT-TGT-CA-ATAGGA-TC-ATAAT--ACGA-A---TA--T-G-CTC-C-GTGG-TTA-G-C-GGAC-CGT---AAC----T-TTTGT--C----ACCGGTCA-T----TGT-TA--TTTTC----AAAGTG--T-G-AC-ATA-TGAGGCAGGGT--T---TGGT-GT-AG---CCTTT---TAG--ACCA-TT--TATC-AAAAACA--AT---T--GCGG-CTA-CA-AA----TGCCGT--AAA-------CA-G------AGTA-CGAATACT-A-CAAGCCACAA-T-A-AGTAC-ATTTGGCCC--TCA-AA-AGC-GA-GAAAT-ATCGT--AACT--TTTT--CC--AA-A-ACAAG-TT-C-AAAGG-ATCGGAAA--GG-G-CA-TTG-AA--AA-TGC---TTTG-TCTATTA-T----ACAG-AATATGTA--------TTCTGCTC--GATGCTTT--GTTTTT--TCTGGACTTTTG-TTCT--GT-ACA--A----TTTTTTTG--CT-AC---A-AATAGAT--CC--TT---AAAT--TGCAT-AA-AT--A-AC-AAAC--TTCAAA-TA--GG-TACC-AT-C-A--TT-AGC-TG-C---TA--CT-ACT-TATGCT--CCGGT-G--G-ATC-CGGATCCCTCCGC--GC-TAACGATCGGA---TACACGGC
gi|7 : AACA-T-TATATGA----TT---AA-CTCT-G-CC-TCACT-GT---CAACC-ATTT-CTGTCATC-TT-CA--ATGGAAA--CT-AAGAAA---------------TGAA-----------------TA-----------------AT----------------C-CT-AGAA------C---TT-TT-GT-TCGG--TTTA-TGA-GTT-AT---ATCCAT-TATT-T-A-A-T-TCAA-CA--T-TGGGGCCGCG-TTCATTC-G-GAATGT-CGCT-CA----CCGT-TGT-CATA--GAA-T--ATT-T--A-AATA---TA--TTG-CTC---GTGG-TTA---C-GGAC--GT---AAA----TATTTGTTGC----AC--GTCAGT----TTG-TA--TTTTT--CAAA-GTG--T-GGAT-G----GAGGT----T--T---GGGT-GT-AG---CCTTT---TAGG-ACCA--T--TATC-AAAGA-AT-AT---T--G-GGGCTATCACAA---CTGCCGT--AA--------C--A------AGTA-CGAATACT-AACAAGC-AC-A-T-A-AGT-C--TTTGGGCC--CT--AA-AGC-GA-G-AAT-ATCGT--A--CT-TTTT--CC--A----A-AAGTTT-C-AA--G-AT-GGAAAAGGG-CGTACTTG-AA--AA-TGC---TTTGTTCTATTA-CATTAACAGAAATATA-A--------CCTTC-TC--ATTGCTTTTGG-TT----TTT-GACTTTGG-TTCT--GT-AC---AATTTTTTTTTTG--CT-AC---ATAATA-AT--CC-TTT---AAAT-ATGC---AA-AT--A-AC-AAAC--CT-CAA-TA--GG-TACT-AT-CAA--TT-AGC-CGCC---TA--T--ACT-TATGCTTCC--GT-G--GCAT--CGGAT--CTCTGCTGGCGTACGGAT--GG-GTTACACGg
gi|12 : ATGA----TC---TAACTCTTG-CC-TCATT-AT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAA---------------TGAAATAATACAAATGAA---TA-----------------AT----------------C-CT-AGAC-AA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCCAC-ATTT-T-A-ACT-TC---AA--CATTGCTCCGCG-TTC-TTCGG-A----T-TGCTGCT----TCGT-TGT-CATA--GGA-T--
gi|8 : ACT-GT---CAACC-ATTT-C----GTC-TT-CA---TGGAAA--CT-GA---------------------A------------------TA-----------------AT----------------C-CT-AGAC-AA---CT--TT-TT-GT-TTTGCGCAT-ATGA-TGTTATTT-ATCCAC-ATTT-T-A-A-C-TT---CA--
gi|13 : -C----GTCCTT-CACCTTGGAA---CT-AAGAAA---------------TGAATAATACAAATGAAA---TA-----------------AT----------------C-CT-AGAG-CA---CCCATT-TT-GT-TTG-CGTTTA-TGA-GTTAATTT-ACCCTC-Aacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggctacaaactgccgtaaacagagtagaatactacaagccacataagtacaccaaagcgtgaaattcgtactttttccaagcaaagttcaagatcggaaaggctacttgaataatgctttgtctattatacagaaaaatgcactctgttcaagcattgttttatctgacttttgttctgtaaattttttttagtacaaataatcctttaaaatgatgcaaataacaaactgtcagactaggtaacatgcaattaagccaccgtatctgacttatgctccgtggcatccggatccctccgcggcgtgcggatcgggatacacggcgt
gi|14 : acccccattctccccaccC-TCGTG--TTA-G-CTGGAC-CGCGTAAAA----T-TTTGT--C----A-CGGTCA-TTTACTTG-TAATTTTTT--CCAAAATGT-T-GGAC---A-TGAGGCAcaa
gi|9 : ggA-T----TTG-TA--TTTTT--CAAT-GTA--T-GGAC-AAA-TGAGGCAGATT--T---TTGTTGT-AGT--C-GTT---TAG--ACCA-TT--TATCCAAAGACAT-AG---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------CA-G------AGTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTACA-TTTGGCCC--TC--AA-AGCTGT-G-AAT-ATCGT--A--C--TTTTTTCG--AG-C-A-AAG-T--C-AA--G-ATCGGAAA--GGGC-TACTTGAAT--AA-T-----CTTG-TCTAT-A-T----ACAATAA-ATGCG--------CTCTG-TTCAA--GCTTT--A-TTTA--TCT-GACTTTTG-TTCT--GT-AC---A----ATTTTTTG--TTTAC---A-AATG-AA--CC-TTT---AGAT-ATGCA--AA-AT--A-AC-AAAC--TTCAAA-TA--GG-TA-C-AT-C-A--TT-ATC-CGCC---TA--CC-ATC-T-TGCTC-C--GT-G--GCACC-CGGAT-CCTCCGC-GGCGTTCGGAT-GGG-A-TACACGGC
gi|8 : ---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------CA-G------AGTA--GAATACT-A-CAAGCCAC-A-T-A-AGTACA-----------CC--AA-AGC-GT-G-AAA-TTCGT--A--C--TTTTT-CC--AAGC-A-AAG-TT-C-AA--G-ATCGGAAA--GG-C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T----ACAGAAAAATGCA--------CTCTG-TTCAA--GCATT--GTTTTA--TCT-GACTTTTG-TTCT--GT-AA---AT---TTTTTTTA--GT-AC---A-AATA-AT--CC-TTTA--AAATGATGC---AA-AT--A-AC-AAACTGTC-AGACTA--GG-TAAC-ATGCAA--TTAAGC-CACCG--TATCTG-ACT-TATGCTC-C--GT-G--GCATC-CGGATCCCTCCGC-GGCGTGCGGATCGGG-A-TACACGGC
gi|10 : actgtcaaccatttcgtcttcatggaaactgaataatcctagacaactttttgttttgcgcatatgatgttatttatccacattttaacttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG-CTA-CA-AA---CTGCCGT--AAA-------CA-G------AGTA-CGAATACT-A-TAAGCCAC-A-T-A--GTACA-TTTGGCCC--TC--AA-AGC-GA-G-AAT-ATCGT--A--C--TTTT--TCCAAA-C-A-ATG-TT-C-AA--G-ATCAGAAA--GGGC-TTCTTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--------CTCTGCTC--AT-GCTTT--G-TATA--TCT-GACTTTTT-TTCT--GT-AC---AT---TTTTTTTG--CT-AC---A-AATA-AT--CC-TTT----AAT-ATGCA--AA-AT--A-AC-AACT--TC-AAA-TA--GG-TACC-AT-C-A--TT-AGC-CGCC---TA--CT-ACT-TATGCTC-C--GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-TACACGGCgt
gi|11 : cAATATGTA--------CTCTGCTC--AT-GCTTT--G-TTTA--TCA-GACTTTTG-TTCT--GT-AC---AA---TTTTTTCG--CT-AC---A-AATA-AT--CC-TTT---AAAT-ATGCA--AA-AT--A-AC-AAAC--TTCCAA-TA--GG-TACC-AT-C-A--TT-AGC-CGCC---TA--CT-ACT-TATGCTC-C--GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-TACACGGCg
gi|16 : -CGGATCCCTCCGC-GGCGTACGGATCGGG-A-TAAACGGCg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1111 1111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 11111111 1111111111 1 222222 111 1111 1111 11 1111 11 1 11 1111 1111111 11111 22 11 11 111 111 11111111 111111111 111 111
lowQualScore : 6 7 0 55 66 4 66 4 4 4 4 4 4 4 777 4 3 1111 3 7 8888 55 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 55 777 666 4 8 4 77 4 4 0 8 4 4 555 8 8 4 1 00 5 5 5 99999999 5 9999999999 5 5 5 0 5 5 4 5 5 5 111111 5 5 5 222 5 666 5 5 888 0000 5 2 66 0000 2 4 9999 4 00 1111 7 00 4 444 4 2 66 888 0 5 66 888 11 5 55 66 5 5 777 7777 8 4 4 2222 55 3333333 4 00000 4 4 4 4 4 4 4 55 4 4 4 8 4 4 0 4 8 55 55 55 4 55 999 4 8 4 4 99 4 4 4 0 55 88 111 4 4 8888 1 2 88 55 7 111 88 3 3 55 3 3 55 3 3 3 77777777 333333333 666 3 3 3 55 000 3 3 88 88 3 3 3 3 3 88 3 3 3 3 88 3 3 0 000 8888 1 3 3 3 55 3 3 6 3 7 3
lowQualScore : . . . .. .. . .. . . . . . . . ... . . .... . . .... .. . ....................................................................................... . .. ... ... . . . .. . . . . . . ... . . . . .. . . . ........ . .......... . . . . . . . . . . ...... . . . ... . ... . . ... .... . . .. .... . . .... . .. .... . .. . ... . . .. ... . . .. ... .. . .. .. . . ... .... . . . .... .. ....... . ..... . . . . . . . .. . . . . . . . . . .. .. .. . .. ... . . . . .. . . . . .. .. ... . . .... . . .. .. . ... .. . . .. . . .. . . . ........ ......... ... . . . .. ... . . .. .. . . . . . .. . . . . .. . . . ... .... . . . . .. . . . . . .
lowQualScore : 7 3 8 88 11 4 11 4 4 4 4 4 4 0 000 0 6 4444 6 3 7777 55 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 55 000 555 0 0 0 55 0 0 7 3 0 0 333 9 9 4 0 66 0 0 0 88888888 0 9999999999 0 0 0 0 0 0 3 7 7 7 666666 7 7 7 000 0 222 0 0 888 6666 0 5 99 6666 5 4 4444 4 66 7777 3 66 4 666 4 0 99 888 0 0 99 888 99 0 11 99 0 0 888 9999 0 0 0 6666 55 0000000 0 00000 0 0 0 0 0 0 0 11 0 0 0 0 0 0 8 0 0 55 55 00 0 00 555 0 0 0 0 55 0 0 0 8 55 88 000 0 0 5555 0 6 66 00 3 999 66 6 6 00 6 6 00 6 6 6 44444444 999999999 444 6 6 6 00 000 6 6 66 66 6 6 6 6 6 66 6 6 6 6 66 6 6 5 000 2222 3 6 6 6 00 6 3 7 6 3 6
consensus : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TCAA--CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-CA-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACA-T-A-AGTACAATTT-GGCCC-TCAA-A-GC-GA-GAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--GTTT-AT-CT--G-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
Reference ( family-1436 ) : GTCATA-AGGAAAGAATCCCATTTGTAACATTN-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TCNA--CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-CA-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACA-T-A-AGTACAATTT-GGCCC-TCAA-A-GC-GA-GAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--GTTT-AT-CT--G-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
gi|1 : GTCATACAGGAAAGAATCC-ATTTTTAACATTA-ATA--TGAAT--C-TA-A-CTCT-G-CC-TCACT-GT---CAACCCATTT-CA---GTC-TT-CA--T-GGAAAGTCT-AAAAAA---------------T--------------AA----------------AATAATAACAAA------TGACAAA--------------ATCC-TA--GAAGA---C---TTGTT-GT-TTTGCGTTTA-TGACGTGTATTT-ATCCAC-ATTTGT-ATA-T-TCAA--CATTGCT-CCGCG-TCT-TTC-GGA----T-CGCTGTCGTACCTGCTT-T-CAA-CA-GA-GT-ATCA-TTCATA-AATGA---T--T-G-CTC-C-GTGG-TTA-GTC-GGACTCGT---AAA----T-TTT-T--CTTCGACCGGGCT-C----TTG-TA--TTTTCAACAAGAGTG--T-GCAC-AAA-TGAGTCCGAGT--T---GAGTTGTCAGATCCTATCCATAGGAACC-AGGT--TATC-AAA-ACAT-AT---TCCA-GG-CTA-CA-AAGACTTGCCGT--AAAAGCTAAGC-GGAAGTTAGTAGCGAAGACTTA-CAAGC-CACA-T-ATAG-GCGATTTTGACCCATCAACA-AT-GA-GAA-TTATCTTTAA--C--TTTT-CC--AA-G-C-AAG-TT-C-AA--G-ATCGGAAAGGGGC-TACTTGAAAGCAACTGCG--TTTG-CC-ATTA-T----ACAGAAAAATG-A--CTCT--GCTC-A---GCTTT--GTTT-AT-CT--G-A--TTTG-TTCT--GGT-AAT---A----TTTTTTT-T-TTTTGTAC---A-AAATA-AT--CCTTTT--AAG-T-ATGCATGAAATTAG-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GCTCGTCGATTCC-C--AC-TAGGC--C-C-TTGGAG-CATCGCGGATCCCTCCGC-GGCGTA-GGA-CGGG-ATT-ACACGG
gi|10 : G-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-TAAGC-CACA-T-A--GTACA-TTT-GGCCC-TCAA-A-GC-GA-GAA-T-ATCGT--A--C--TTTT-TCCAAA-C-A-ATG-TT-C-AA--G-ATCAGAAAGGG-C-TTCTTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--GCTC-A-T-GCTTT--GTAT-AT-CT--G-ACTTTTT-TTCT--G-T-A-C---A----TTTTTTTTG-CT----AC---A-AA-TA-AT--CCTTT---AA--T-ATGCA--AAAT--A-AC-AA-C-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|11 : cAATATGTA--CTCT--GCTC-A-T-GCTTT--GTTT-AT-CA--G-ACTTTTG-TTCT--G-T-A-C---AA---TTTTTTC-G-CT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCCAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|12 : A--TGA-T--C-TA-A-CTCTTG-CC-TCATT-AT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAA---------------TGAAATAATACAAATGA----------------A-----------------T-----A--------------ATCC-TA--GACAA---CT--TT-TT-GT-TT-GCGTTTA-TGA-G-TTATTT-ATCCAC-ATTT-T-A-ACT-TCAA--CATTGCT-CCGCG-TTC-TTCGG-A----T-TGCTG------CT-TCG-T-TGT-CA-TA-GG-ATg
gi|13 : -C----GTCCTT-CACCTTGGAA---CT-AAGAAA---------------T--------------GA----------------A-----------------T-----AATACAAATGAAATAATCC-TA--GAGCA---CCCATT-TT-GT-TTG-CGTTTA-TGA-GTTAATTT-ACCCTC-A
gi|14 : acccccattctccccaccC-TCGTG--TTA-G-CTGGAC-CGCGTAAAA----T-TTTGT--C----A-CGGTCA-TTTACTTG-TAATTTTTT--CCAAAATGT-T-GGAC---A-TGAGGCAcaa
gi|15 : ggGTCATA-AGGAAATAATCC-ATTTGTAACATTA-ATA--TGA-C--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-
gi|16 : gt-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-AAACGGC
gi|2 : GTCATA-AGAAAAGAATCCATTTTGTAACATTA-ATA--TGA-TTTC-TACA-CTCT-G-C--TCACTTGT---CAACC-ATTT-C----GTC-TTGCA--ATGGAAA--CTTAAGAAA---------------T--------------GATATAAGTTAGCATGAAA-----------------T-----A--------------ATCC-TAAGGACAAGGGC---TT-TT-TTGTTCGCGTTTA-TGA-GTATATTTTATCCACCGTTT-T-GCA-C-TCCAAACATTGCT-CCGCG-TTC-TTCCG-A----T-CGCTG------CT-CCG-TGTGTTCA-TA-GGCATCA-TC-ATG-AA--AATATA-T-G-CTTACCGTGGATTATG-C-GGAC-CGT---AAGAGTCT-TCTCT--C----ACCGGT-A-T----TTG-TA--TTTTT--CAAA-GTG--TAGGAC-AAA-TGAGGCAG-GT--TTTCGGTT-GT-AG--CCTTT----AG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GGGCTA-CA-AAA--CTGCCGTTAAAA-------CCAGA-----GTA-CGAATACT-A-CAAGCACA-A-T-A-AGTACA--TT-GGCCT-CCAA-AAGC-GAAGAA-TGATCGT--A--C--TTTT-TCCAAA-C-A-AAG-TTTC-AA--GCATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T-----CAGAAAAATGTAA-CTCTTGGCTCTA-T-GATTT--GTTT-AA-CTCAG-GCTTTTG-TCCCTGG-T-A-CCA-A----TTTTTTT-C-TT----AC---A-AA-TA-ATAACCTTTTTAAAA-T-ATGCA--AATTT-A-ACGAAACGT-TCAAA-TACCGG-TACC-AT-C-AATTTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--GGCATC-CGGAATCCTCCGC-GGCGTACGGATC-GG-A-T-ACAgt
gi|3 : tgGTCATA--GGAAAGA-TTCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCGCT-GTTCACAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAAATGAAATAATACAATT--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCC-C-ATTT-T-A-A-T-TCAA--CATTGCT-CCGC--TTC-TTC---A----T--GCTG------CTGCCG-T-TGT-CA-TA-GG-ATCA-TT-ATA-AA--A---TATT-G-CT--CCATGG-TTA-G-C-GGAC-CGT---AAA----T-TTTCT--C----ACCGGTCA-T----TTGTTA--TTTTT--C--AAGTGGTT-GGACAAAA-TGA-GCAGAGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-A--T--TATC-AAAGACATAATGCAT--G-GG-CTA--A-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACA-TAA-AGTAC-ATTT-GGCCC-TCAA-A-GC-GA-G-A-T-ATCAT--A--C--TTTT-CC--AAGC-A-AAGTTT-C-AAC-G-ATCGGAAAGGG-C-TAC-TGAAA--AATTGC---TTTG-TCTATT--T----ACAAAAAAATGT---CTCT--GCTC-A-T-GCTTTA-GTTT-AT-TT--G-AC-TTTG-TTC---G-TCA-CACAA----TTTTTTT-A-AT----AC-----AA-T--AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC--AAC-T-TCAAA-TAG-GG-TACC--T-C-A--TTA-G--CGCC---TAC-C--ACTTATGC-T----GT---G-CATC-CGGATCCCTCCGCGGGCGTACGGATCGGGAA-TAACACGGC
gi|4 : gtGTCATA-AGGAAAGA---TCATT-GCAACATTAGATGAGTGA-T--CGTA-AACTC--G-CCGTCA-T-GT---CACCG-ATTTGT----GTC-TT-CA--TCGGAAA--CT-AAGAAA---------------T--------------GG----------------AAATAATTACAAATGAAGT-----A--------------ATCC-TA--GAAAA---TCT-TT-TT-GT-TTGGCGTT-A-TGA-GTT------ATACAC-ATTT-TGA-A-TGTCAA--CATTGCT-CCGCGGTTC-TCG-G-A----TTCGCTG------CTGGCGGT-TGT-CAATA-GG-ATCAATT-ATA-AA------TA-T-GGCTC-CGTTGG-TTA-G-G-GAAC-CGT---ACA----T-TTTGT--C----AC-GGTCA-T----GTC-TAA-TTTTT----AAAGTG--T-GGAC-AAAATGAGGCAGAGTGTT---GGG--GT-AG--CCTTT---TAG--A---AT-TCTTATC-AAAGACAT-AT---T----GG-CTA-CA-AA----TG--GT---AA-------C-AGA-----GTA--GAATACT-A-CAAGC-CACA-T-G-AGTAC-ATTT-GACCC-TCAA-A-GC-GA-G-A-T-AGCGT--A--CTTTTTT-CCA-AA-CAA-AAG-TT-CGAA--G-ATCGGAAAGGG-C-TACTTG-AA--AA-TGCCTGTTGG-TCTATTAGT----ACAGAAATATGTAACTTCT--GCTC-A-TGGCTTT--G-TA-AT-CT--G-ACTTTTGTTTCT--G-T-A-C---A----ATTTTTT-GCAG----ACAAGA-AA-TA-AT--CC-TT---AAA-T-G---A--AAAT--AGAC-AAAC-T-TCAAA-TA--GGTTACCGAT-C-A---TA-G--CG-C---TACGT--AC-TGTAC-TCTC-GT---G-CATC-CGGATCCTCCTGC-GGCGTACGGt
gi|5 : gtGTCATA-AGGAAAGAATCCCATTTGTAACAT-A-ATA--TGA-T--C-AA-G-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------------------------T-----A--------------ATCT-AA--GAAAA---C---TT-TT-GT-TTGGCGTTTAATGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TCCA--C-TTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CT-CCG-T-TGT-CA-TATGG-AT-A-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG---CTTT---TAG--ACCAAT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C--GA-----GTA-CGAATACT-A-CAAGC-CACA-T-A-AGTACAATTT-GCGCC-TCAA-A-GC-GA-GAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAA-GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--G-TC-A---GCTTT--GTTT-AT-CT--G-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-GT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-T-AAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-A--ACTTATGC-T--C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-ATT-ACACGGCgcg
gi|6 : AACATT--ATA---GA-T--C-TA-A-CTCT-GGCC-TCACT-GT---CAACC-ATTT-C----GTC-TTTCA--T-GGAAA--C--AAGAAA---------------T--------------GA----------------ACATAATACAATATGAA-T-----A--------------ATCCCTA--GAAAA---C---TT-TT-GT-TTG-CGTTTA-TG-----TATTT-ATC-AC-ATTT---A-A-T-TCAAA-CATTGCT-CCGCG-TTC-TTC-GGA----T-CGCT-------CT-CCG-T-TGT-CAATA-GG-ATCA-TA-ATACGA--A---TA-T-G-CTC-C-GTGG-TTA-G-C-GGAC-CGT---AAC----T-TTTGT--C----ACCGGTCA-T----TGT-TA--TTTTC----AAAGTG--T-G-AC-ATA-TGAGGCAGGGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAAACA--AT---T--GCGG-CTA-CA-AA----TGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACAAT-A-AGTACA-TTT-GGCCC-TCAA-AAGC-GA-GAAAT-ATCGT--AACT--TTTT-CC--AA-A-ACAAG-TT-C-AAAGG-ATCGGAAAGGG-C--A-TTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAA-TATGTA--TTCT--GCTCGA-T-GCTTT--GTTT-TTTCT--GGACTTTTG-TTCT--G-T-A-C---AA---TTTTTTT-G-CT----AC---A-AA-TAGAT--CCTT----AAA-T--TGCAT-AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-TG-C---TAC-T--ACTTATGC-TC-CGGTG--G--ATC-CGGATCCCTCCGC--GC-TAACGATC-GG-A-T-ACACGGC
gi|7 : AACATT--ATA--TGA-T----TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-CTGTCATC-TT-CA--ATGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAA-----C---TT-TT-GT-TCGG--TTTA-TGA-GTT-AT---ATCCAT-TATT-T-A-A-T-TCAA--CATTGGGGCCGCG-TTCATTC-G-GAATGT-CGCT--------CACCG-T-TGT-CA-TA-GA-AT-A-TT--TA-AAT-A---TA-TTG-CTC---GTGG-TTA---C-GGAC--GT---AAA----TATTTGTTGC----AC--GTCAGT----TTG-TA--TTTTT--CAAA-GTG--T-GGAT-G----GAGGT----T--T---GGGT-GT-AG--CCTTT---TAGG-ACC-AT-T---ATC-AAAGA-AT-AT---T--G-GGGCTATCACAA---CTGCCGT--AA--------C-A-A-----GTA-CGAATACT-AACAAGC--ACA-T-A-AGT-C--TTT-GGGCC-CTAA-A-GC-GA-GAA-T-ATCGT--A--CT-TTTT-CC--A----A-AAGTTT-C-AA--G-ATGGAAAAGGG-CGTACTTG-AA--AA-TGC---TTTGTTCTATTA-CATTAACAGAAATATA-A--C-CT--TCTC-ATT-GCTTTTGGTT---T-TT--G-ACTTTGG-TTCT--G-T-A-C---AATTTTTTTTTT-G-CT----AC---ATAA-TA-AT--CCTTT---AAA-T-ATGC---AAAT--A-AC-AAAC-C-TC-AA-TA--GG-TACT-AT-CAA--TTA-GC-CGCC---TA--T--ACTTATGCTTC-C-GTG--G-CAT--CGGAT--CTCTGCTGGCGTACGGAT-GGG-T-T-ACACGg
gi|8 : ACT-GT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-------------------------------------GA----------------A-----------------T-----A--------------ATCC-TA--GACAA---C---TT-TTTGT-TTTGCGCATA-TGA-TGTTATTT-ATCCAC-ATTT-T-A-ACT-TCAA--CA
gi|8 : ---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA--GAATACT-A-CAAGC-CACA-T-A-AGTACA-----------CCAA-A-GC-GT-GAA-A-TTCGT--A--C--TTTTTCC--AAGC-A-AAG-TT-C-AA--G-ATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T----ACAGAAAAATGCA--CTCT--GTTC-A-A-GCATT--GTTTTAT-CT--G-ACTTTTG-TTCT--G-T-A-A---A----TTTTTTTTA-GT----AC---A-AA-TA-AT--CCTTT---AAAATGATGCA--AA-T--A-AC-AAAC-TGTCAGACTA--GG-TAAC-ATGC-AA-TTAAGC-CACCG--TAT-CTGACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTGCGGATCGGG-A-T-ACACGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggctacaaactgccgtaaacagagtagaatactacaagccacataagtacaccaaagcgtgaaattcgtactttttccaagcaaagttcaagatcggaaaggctacttgaataatgctttgtctattatacagaaaaatgcactctgttcaagcattgttttatctgacttttgttctgtaaattttttttagtacaaataatcctttaaaatgatgcaaataacaaactgtcagactaggtaacatgcaattaagccaccgtatctgacttatgctccgtggcatccggatccctccgcggcgtgcggatcgggatacacggcgt
gi|9 : actgtcaaccatttcgtcttcatggaaactgaataatcctagacaactttttgttttgcgcatatgatgttatttatccacattttaacttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-T----TTG-TA--TTTTT--CAAT-GTA--T-GGAC-AAA-TGAGGCAGATT--T---TTGTTGT-AG--TCGTT---TAG--ACC-AT-T--TATCCAAAGACAT-AG---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACA-T-A-AGTAC-ATTT-GGCCC-TCAA-A-GCTGT-GAA-T-ATCGT--A--CTTTTTT-CG--AG-C-A-AAG--T-C-AA--G-ATCGGAAAGGG-C-TACTTGAAT--AA-T-----CTTG-TCTA-TA-T----ACA-ATAAATGCG--CTCT--GTTC-A-A-GCTTT--ATTT-AT-CT--G-ACTTTTG-TTCT--G-T-A-C---A----ATTTTTT-GTTT----AC---A-AA-TG-AA--CCTTT---AGA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TA-C-AT-C-A--TTA-TC-CGCC---TAC-C--ATCT-TGC-TC-C-GTG--G-CACC-CGGAT-CCTCCGC-GGCGTTCGGAT-GGG-A-T-ACACGGCgt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 1111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11111111 1111111111 222222 1111 1111 1111 11 1111 11 1 11 1111 1111111 11111 22 11 11 111 111 11111111 111111111 111 111
lowQualScore : 6 7 0 88 66 4 66 4 4 4 4 4 4 4 777 4 3 1111 3 7 8888 55 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 55 777 666 4 8 4 77 4 4 0 8 4 4 555 8 8 4 66 4 5 5 5 99999999 5 9999999999 5 5 5 5 5 5 5 4 5 5 5 111111 5 5 5 0000 5 666 5 5 888 0000 5 2 66 0000 2 4 9999 4 00 1111 7 00 4 444 4 2 66 888 0 5 66 888 11 5 55 66 5 5 777 7777 8 4 4 2222 55 3333333 4 00000 4 4 4 4 4 4 4 55 4 4 4 4 4 4 4 44 8 55 55 55 4 55 999 4 8 4 4 99 4 4 4 5 55 8 111 4 4 8888 1 2 88 55 7 111 88 3 3 88 3 55 3 3 3 77777777 333333333 666 3 3 3 55 000 3 3 88 88 3 3 3 3 3 88 3 3 3 3 88 3 3 0 000 8888 1 3 3 3 55 3 3 6 3 7 3
lowQualScore : . . . .. .. . .. . . . . . . . ... . . .... . . .... .. . ....................................................................................... . .. ... ... . . . .. . . . . . . ... . . . .. . . . . ........ . .......... . . . . . . . . . . . ...... . . . .... . ... . . ... .... . . .. .... . . .... . .. .... . .. . ... . . .. ... . . .. ... .. . .. .. . . ... .... . . . .... .. ....... . ..... . . . . . . . .. . . . . . . . .. . .. .. .. . .. ... . . . . .. . . . . .. . ... . . .... . . .. .. . ... .. . . .. . .. . . . ........ ......... ... . . . .. ... . . .. .. . . . . . .. . . . . .. . . . ... .... . . . . .. . . . . . .
lowQualScore : 7 3 8 22 11 4 11 4 4 4 4 4 4 0 000 0 6 4444 6 3 7777 55 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 55 000 555 0 0 0 55 0 0 7 3 0 0 333 9 9 4 11 4 0 0 0 88888888 0 9999999999 0 0 0 0 0 0 0 3 7 7 7 666666 7 7 7 2222 0 222 0 0 888 6666 0 5 99 6666 5 4 4444 4 66 7777 3 66 4 666 4 0 99 888 0 0 99 888 99 0 11 99 0 0 888 9999 0 0 0 6666 55 0000000 0 00000 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 88 0 55 55 00 0 00 555 0 0 0 0 55 0 0 0 7 55 0 000 0 0 5555 0 6 66 00 3 999 66 6 6 66 6 00 6 6 6 44444444 999999999 444 6 6 6 00 000 6 6 66 66 6 6 6 6 6 66 6 6 6 6 66 6 6 5 000 2222 3 6 6 6 00 6 3 7 6 3 6
consensus : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
Reference ( family-1436 ) : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
gi|1 : GTCATACAGGAAAGAATCC-ATTTTTAACATTA-ATA--TGAAT--C-TA-A-CTCT-G-CC-TCACT-GT---CAACCCATTT-CA---GTC-TT-CA--T-GGAAAGTCT-AAAAAA---------------T--------------AA----------------AATAATAACAAA------TGACAAA--------------ATCC-TA--GAAGA---C---TTGTT-GT-TTTGCGTTTA-TGACGTGTATTT-ATCCAC-ATTTGT-ATA-T-TC--AA-CATTGCT-CCGCG-TCT-TTC-GGA----T-CGCTGTCGTACCTGCTT-T-CAA-C-A-GA-GT-ATCA-TTCATA-AATGA---T--T-G-CTC-C-GTGG-TTA-GTC-GGACTCGT---AAA----T-TTT-T--CTTCGACCGGGCT-C----TTG-TA--TTTTCAACAAGAGTG--T-GCAC-AAA-TGAGTCCGAGT--T---GAGTTGTCAGATCCTATCCATAGGAACC-AGGT--TATC-AAA-ACAT-AT---TCCA-GG-CTA-CA-AAGACTTGCCGT--AAAAGCTAAGC-GGAAGTTAGTAGCGAAGACTTA-CAAGC-CAC-AT-ATAG-GCGATTTTGACCCATC-AACA-AT-GA-G-AATTATCTTTAA--C--TTTT-CC--AA-G-C-AAG-TT-C-AA--G-ATCGGAAAGGGGC-TACTTGAAAGCAACTGCG--TTTG-CC-ATTA-T----ACAGAAAAATG-A--CTCT--GCTC-A---GCTTT--G-TTT-ATCT--GA--TTTG-TTCT--GGT-AAT---A----TTTTTTT-T-TTTTGTAC---A-AAATA-AT--CCTTTT--AAG-T-ATGCATGAAATTAG-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GCTCGTCGATTCC-C--AC-TAGGC--C-C-TTGGAG-CATCGCGGATCCCTCCGC-GGCGTA-GGA-CGGG-ATT-ACACGG
gi|10 : G-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-TAAGC-CAC-AT-A--GTACA-TTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-TCCAAA-C-A-ATG-TT-C-AA--G-ATCAGAAAGGG-C-TTCTTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--GCTC-A-T-GCTTT--G-TAT-ATCT--GACTTTTT-TTCT--G-T-A-C---A----TTTTTTTTG-CT----AC---A-AA-TA-AT--CCTTT---AA--T-ATGCA--AAAT--A-AC-AA-C-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|11 : cAATATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCA--GACTTTTG-TTCT--G-T-A-C---AA---TTTTTTC-G-CT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCCAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|12 : A--TGA-T--C-TA-A-CTCTTG-CC-TCATT-AT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAA---------------TGAAATAATACAAATGA----------------A-----------------T-----A--------------ATCC-TA--GACAA---CT--TT-TT-GT-TT-GCGTTTA-TGA-G-TTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CATTGCT-CCGCG-TTC-TTCGG-A----T-TGCTG------CT-TCG-T-TGT-C-A-TA-GG-ATg
gi|13 : -C----GTCCTT-CACCTTGGAA---CT-AAGAAA---------------T--------------GA----------------A-----------------T-----AATACAAATGAAATAATCC-TA--GAGCA---CCCATT-TT-GT-TTG-CGTTTA-TGA-GTTAATTT-ACCCTC-A
gi|14 : acccccattctccccaccC-TCGTG--TTA-G-CTGGAC-CGCGTAAAA----T-TTTGT--C----A-CGGTCA-TTTACTTG-TAATTTTTT--CCAAAATGT-T-GGAC---A-TGAGGCAcaa
gi|15 : ggGTCATA-AGGAAATAATCC-ATTTGTAACATTA-ATA--TGA-C--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-
gi|16 : gt-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-AAACGGC
gi|2 : GTCATA-AGAAAAGAATCCATTTTGTAACATTA-ATA--TGA-TTTC-TACA-CTCT-G-C--TCACTTGT---CAACC-ATTT-C----GTC-TTGCA--ATGGAAA--CTTAAGAAA---------------T--------------GATATAAGTTAGCATGAAA-----------------T-----A--------------ATCC-TAAGGACAAGGGC---TT-TT-TTGTTCGCGTTTA-TGA-GTATATTTTATCCACCGTTT-T-GCA-C-TCCAAA-CATTGCT-CCGCG-TTC-TTCCG-A----T-CGCTG------CT-CCG-TGTGTTC-A-TA-GGCATCA-TC-ATG-AA--AATATA-T-G-CTTACCGTGGATTATG-C-GGAC-CGT---AAGAGTCT-TCTCT--C----ACCGGT-A-T----TTG-TA--TTTTT--CAAA-GTG--TAGGAC-AAA-TGAGGCAG-GT--TTTCGGTT-GT-AG--CCTTT----AG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GGGCTA-CA-AAA--CTGCCGTTAAAA-------CCAGA-----GTA-CGAATACT-A-CAAGCACA--AT-A-AGTACA--TT-GGCCT-CC-AA-AAGC-GAAG-AATGATCGT--A--C--TTTT-TCCAAA-C-A-AAG-TTTC-AA--GCATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T-----CAGAAAAATGTAA-CTCTTGGCTCTA-T-GATTT--G-TTT-AACTCAGGCTTTTG-TCCCTGG-T-A-CCA-A----TTTTTTT-C-TT----AC---A-AA-TA-ATAACCTTTTTAAAA-T-ATGCA--AATTT-A-ACGAAACGT-TCAAA-TACCGG-TACC-AT-C-AATTTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--GGCATC-CGGAATCCTCCGC-GGCGTACGGATC-GG-A-T-ACAgt
gi|3 : tgGTCATA--GGAAAGA-TTCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCGCT-GTTCACAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAAATGAAATAATACAATT--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCC-C-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGC--TTC-TTC---A----T--GCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TATT-G-CT--CCATGG-TTA-G-C-GGAC-CGT---AAA----T-TTTCT--C----ACCGGTCA-T----TTGTTA--TTTTT--C--AAGTGGTT-GGACAAAA-TGA-GCAGAGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-A--T--TATC-AAAGACATAATGCAT--G-GG-CTA--A-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-ATAA-AGTAC-ATTT-GGCCC-TC-AA-A-GC-GA-G--AT-ATCAT--A--C--TTTT-CC--AAGC-A-AAGTTT-C-AAC-G-ATCGGAAAGGG-C-TAC-TGAAA--AATTGC---TTTG-TCTATT--T----ACAAAAAAATGT---CTCT--GCTC-A-T-GCTTTA-G-TTT-ATTT--GAC-TTTG-TTC---G-TCA-CACAA----TTTTTTT-A-AT----AC-----AA-T--AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC--AAC-T-TCAAA-TAG-GG-TACC--T-C-A--TTA-G--CGCC---TAC-C--ACTTATGC-T----GT---G-CATC-CGGATCCCTCCGCGGGCGTACGGATCGGGAA-TAACACGGC
gi|4 : gtGTCATA-AGGAAAGA---TCATT-GCAACATTAGATGAGTGA-T--CGTA-AACTC--G-CCGTCA-T-GT---CACCG-ATTTGT----GTC-TT-CA--TCGGAAA--CT-AAGAAA---------------T--------------GG----------------AAATAATTACAAATGAAGT-----A--------------ATCC-TA--GAAAA---TCT-TT-TT-GT-TTGGCGTT-A-TGA-GTT------ATACAC-ATTT-TGA-A-TGTC--AA-CATTGCT-CCGCGGTTC-TCG-G-A----TTCGCTG------CTGGCGGT-TGT-C-AATA-GG-ATCAATT-ATA-AA------TA-T-GGCTC-CGTTGG-TTA-G-G-GAAC-CGT---ACA----T-TTTGT--C----AC-GGTCA-T----GTC-TAA-TTTTT----AAAGTG--T-GGAC-AAAATGAGGCAGAGTGTT---GGG--GT-AG--CCTTT---TAG--A---AT-TCTTATC-AAAGACAT-AT---T----GG-CTA-CA-AA----TG--GT---AA-------C-AGA-----GTA--GAATACT-A-CAAGC-CAC-AT-G-AGTAC-ATTT-GACCC-TC-AA-A-GC-GA-G--AT-AGCGT--A--CTTTTTT-CCA-AA-CAA-AAG-TT-CGAA--G-ATCGGAAAGGG-C-TACTTG-AA--AA-TGCCTGTTGG-TCTATTAGT----ACAGAAATATGTAACTTCT--GCTC-A-TGGCTTT--G--TA-ATCT--GACTTTTGTTTCT--G-T-A-C---A----ATTTTTT-GCAG----ACAAGA-AA-TA-AT--CC-TT---AAA-T-G---A--AAAT--AGAC-AAAC-T-TCAAA-TA--GGTTACCGAT-C-A---TA-G--CG-C---TACGT--AC-TGTAC-TCTC-GT---G-CATC-CGGATCCTCCTGC-GGCGTACGGt
gi|5 : gtGTCATA-AGGAAAGAATCCCATTTGTAACAT-A-ATA--TGA-T--C-AA-G-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------------------------T-----A--------------ATCT-AA--GAAAA---C---TT-TT-GT-TTGGCGTTTAATGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--CA-C-TTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CT-CCG-T-TGT-C-A-TATGG-AT-A-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG---CTTT---TAG--ACCAAT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C--GA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GCGCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAA-GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--G-TC-A---GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-GT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-T-AAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-A--ACTTATGC-T--C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-ATT-ACACGGCgcg
gi|6 : AACATTA--TA---GA-T--C-TA-A-CTCT-GGCC-TCACT-GT---CAACC-ATTT-C----GTC-TTTCA--T-GGAAA--C--AAGAAA---------------T--------------GA----------------ACATAATACAATATGAA-T-----A--------------ATCCCTA--GAAAA---C---TT-TT-GT-TTG-CGTTTA-TG-----TATTT-ATC-AC-ATTT---A-A-T-TC--AAACATTGCT-CCGCG-TTC-TTCGG-A----T-CGCT-------CT-CCG-T-TGT-CAA-TA-GG-ATCA-TA-ATACGA--A---TA-T-G-CT--CCGTGG-TTA-G-C-GGAC-CGT---AAC----T-TTTGT--C----ACCGGTCA-T----TGT-TA--TTTTC----AAAGTG--T--GAC-ATA-TGAGGCAGGGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAAACA--AT---T--GCGG-CTA-CA-AA----TGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACAAT-A-AGTAC-ATTT-GGCCC-TCAAA-A-GC-GA-GAAAT-ATCGT--AACT--TTTT-CC--AA-A-ACAAG-TT-C-AAAGG-ATCGGAAAGGG-C--A-TTG-AA--AA-TGC---TTTG-TCTATTA-T----ACAG-AATATGTA--TTCT--GCTCGA-T-GCTTT--GTTTT-TTCTG-GACTTTTG-TTCT--G-T-A-CA--A----TTTTTTT-G-CT----AC---A-AA-TAGAT--CC-TT---AAA-T--TGCAT-AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-TG-C---TAC-T--ACTTATGC-TC-CGGTG--G--ATC-CGGATCCCTCCGC--GC-TAACGATC-GG-A-T-ACACGGC
gi|7 : AACATTA--TA--TGA-T----TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-CTGTCATC-TT-CA--ATGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAA-----C---TT-TT-GT-TCGG--TTTA-TGA-GTT-AT---ATCCAT-TATT-T-A-A-T-TC--AA-CATTGGGGCCGCG-TTCATTC-G-GAATGT-CGCT--------CACCG-T-TGT-C-A-TA-GA-AT-A-TT--TA-AAT-A---TA-TTG-CTC---GTGG-TTA---C-GGAC--GT---AAA----TATTTGTTGC----AC--GTCAGT----TTG-TA--TTTTT--CAAA-GTG--T-GGAT-G----GAGGT----T--T---GGGT-GT-AG--CCTTT---TAGG-ACC-AT-T---ATC-AAAGA-AT-AT---T--G-GGGCTATCACAA---CTGCCGT--AA--------C-A-A-----GTA-CGAATACT-AACAAGC--AC-AT-A-AGT-C--TTT-GGGCC-CT-AA-A-GC-GA-G-AAT-ATCGT--A--CT-TTTT-CC--A----A-AAGTTT-C-AA--G-ATGGAAAAGGG-CGTACTTG-AA--AA-TGC---TTTGTTCTATTA-CATTAACAGAAATATA-A--C-CT--TCTC-ATT-GCTTTTGG-TT---TTT--GACTTTGG-TTCT--G-T-A-C---AATTTTTTTTTT-G-CT----AC---ATAA-TA-AT--CCTTT---AAA-T-ATGC---AAAT--A-AC-AAAC-C-TC-AA-TA--GG-TACT-AT-CAA--TTA-GC-CGCC---TA--T--ACTTATGCTTC-C-GTG--G-CAT--CGGAT--CTCTGCTGGCGTACGGAT-GGG-T-T-ACACGg
gi|8 : ACT-GT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-------------------------------------GA----------------A-----------------T-----A--------------ATCC-TA--GACAA---C---TT-TTTGT-TTTGCGCATA-TGA-TGTTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CA
gi|8 : ---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA--GAATACT-A-CAAGC-CAC-AT-A-AGTACA-----------CC-AA-A-GC-GT-G-AAA-TTCGT--A--C--TTTTTCC--AAGC-A-AAG-TT-C-AA--G-ATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T----ACAGAAAAATGCA--CTCT--GTTC-A-A-GCATT--G-TTTTATCT--GACTTTTG-TTCT--G-T-A-A---A----TTTTTTTTA-GT----AC---A-AA-TA-AT--CCTTT---AAAATGATGCA--AA-T--A-AC-AAAC-TGTCAGACTA--GG-TAAC-ATGC-AA-TTAAGC-CACCG--TAT-CTGACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTGCGGATCGGG-A-T-ACACGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggctacaaactgccgtaaacagagtagaatactacaagccacataagtacaccaaagcgtgaaattcgtactttttccaagcaaagttcaagatcggaaaggctacttgaataatgctttgtctattatacagaaaaatgcactctgttcaagcattgttttatctgacttttgttctgtaaattttttttagtacaaataatcctttaaaatgatgcaaataacaaactgtcagactaggtaacatgcaattaagccaccgtatctgacttatgctccgtggcatccggatccctccgcggcgtgcggatcgggatacacggcgt
gi|9 : actgtcaaccatttcgtcttcatggaaactgaataatcctagacaactttttgttttgcgcatatgatgttatttatccacattttaacttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-T----TTG-TA--TTTTT--CAAT-GTA--T-GGAC-AAA-TGAGGCAGATT--T---TTGTTGT-AG--TCGTT---TAG--ACC-AT-T--TATCCAAAGACAT-AG---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTAC-ATTT-GGCCC-TC-AA-A-GCTGT-G-AAT-ATCGT--A--CTTTTTT-CG--AG-C-A-AAG--T-C-AA--G-ATCGGAAAGGG-C-TACTTGAAT--AA-T-----CTTG-TCTA-TA-T----ACA-ATAAATGCG--CTCT--GTTC-A-A-GCTTT--A-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----ATTTTTT-GTTT----AC---A-AA-TG-AA--CCTTT---AGA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TA-C-AT-C-A--TTA-TC-CGCC---TAC-C--ATCT-TGC-TC-C-GTG--G-CACC-CGGAT-CCTCCGC-GGCGTTCGGAT-GGG-A-T-ACACGGCgt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 1111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11111111 1111111111 222222 1111 1111 1111 11 1111 11 1 11 1111 1111111 11111 22 11 11 111 111 11111111 111111111 111 111
lowQualScore : 6 7 0 88 66 4 66 4 4 4 4 4 4 4 777 4 3 1111 3 7 8888 55 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 55 777 666 4 8 4 77 4 4 0 8 4 4 555 8 8 4 66 4 5 5 5 99999999 5 9999999999 5 5 5 5 5 5 5 4 5 5 5 111111 5 5 5 0000 5 666 5 5 888 0000 5 2 66 0000 2 4 9999 4 00 1111 7 00 4 444 4 2 66 888 0 5 66 888 11 5 55 66 5 5 777 7777 8 4 4 2222 55 3333333 4 00000 4 4 4 4 4 4 4 55 4 4 4 4 4 4 4 44 8 55 55 55 4 55 999 4 8 4 4 99 4 4 4 5 55 8 111 4 4 8888 1 2 88 55 7 111 88 3 3 88 3 55 3 3 3 77777777 333333333 666 3 3 3 55 000 3 3 88 88 3 3 3 3 3 88 3 3 3 3 88 3 3 0 000 8888 1 3 3 3 55 3 3 6 3 7 3
lowQualScore : . . . .. .. . .. . . . . . . . ... . . .... . . .... .. . ....................................................................................... . .. ... ... . . . .. . . . . . . ... . . . .. . . . . ........ . .......... . . . . . . . . . . . ...... . . . .... . ... . . ... .... . . .. .... . . .... . .. .... . .. . ... . . .. ... . . .. ... .. . .. .. . . ... .... . . . .... .. ....... . ..... . . . . . . . .. . . . . . . . .. . .. .. .. . .. ... . . . . .. . . . . .. . ... . . .... . . .. .. . ... .. . . .. . .. . . . ........ ......... ... . . . .. ... . . .. .. . . . . . .. . . . . .. . . . ... .... . . . . .. . . . . . .
lowQualScore : 7 3 8 22 11 4 11 4 4 4 4 4 4 0 000 0 6 4444 6 3 7777 55 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 55 000 555 0 0 0 55 0 0 7 3 0 0 333 9 9 4 11 4 0 0 0 88888888 0 9999999999 0 0 0 0 0 0 0 3 7 7 7 666666 7 7 7 2222 0 222 0 0 888 6666 0 5 99 6666 5 4 4444 4 66 7777 3 66 4 666 4 0 99 888 0 0 99 888 99 0 11 99 0 0 888 9999 0 0 0 6666 55 0000000 0 00000 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 88 0 55 55 00 0 00 555 0 0 0 0 55 0 0 0 7 55 0 000 0 0 5555 0 6 66 00 3 999 66 6 6 66 6 00 6 6 6 44444444 999999999 444 6 6 6 00 000 6 6 66 66 6 6 6 6 6 66 6 6 6 6 66 6 6 5 000 2222 3 6 6 6 00 6 3 7 6 3 6
consensus : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
Reference ( family-1436 ) : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
gi|1 : GTCATACAGGAAAGAATCC-ATTTTTAACATTA-ATA--TGAAT--C-TA-A-CTCT-G-CC-TCACT-GT---CAACCCATTT-CA---GTC-TT-CA--T-GGAAAGTCT-AAAAAA---------------T--------------AA----------------AATAATAACAAA------TGACAAA--------------ATCC-TA--GAAGA---C---TTGTT-GT-TTTGCGTTTA-TGACGTGTATTT-ATCCAC-ATTTGT-ATA-T-TC--AA-CATTGCT-CCGCG-TCT-TTC-GGA----T-CGCTGTCGTACCTGCTT-T-CAA-C-A-GA-GT-ATCA-TTCATA-AATGA---T--T-G-CTC-C-GTGG-TTA-GTC-GGACTCGT---AAA----T-TTT-T--CTTCGACCGGGCT-C----TTG-TA--TTTTCAACAAGAGTG--T-GCAC-AAA-TGAGTCCGAGT--T---GAGTTGTCAGATCCTATCCATAGGAACC-AGGT--TATC-AAA-ACAT-AT---TCCA-GG-CTA-CA-AAGACTTGCCGT--AAAAGCTAAGC-GGAAGTTAGTAGCGAAGACTTA-CAAGC-CAC-AT-ATAG-GCGATTTTGACCCATC-AACA-AT-GA-G-AATTATCTTTAA--C--TTTT-CC--AA-G-C-AAG-TT-C-AA--G-ATCGGAAAGGGGC-TACTTGAAAGCAACTGCG--TTTG-CC-ATTA-T----ACAGAAAAATG-A--CTCT--GCTC-A---GCTTT--G-TTT-ATCT--GA--TTTG-TTCT--GGT-AAT---A----TTTTTTT-T-TTTTGTAC---A-AAATA-AT--CCTTTT--AAG-T-ATGCATGAAATTAG-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GCTCGTCGATTCC-C--AC-TAGGC--C-C-TTGGAG-CATCGCGGATCCCTCCGC-GGCGTA-GGA-CGGG-ATT-ACACGG
gi|10 : G-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-TAAGC-CAC-AT-A--GTACA-TTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-TCCAAA-C-A-ATG-TT-C-AA--G-ATCAGAAAGGG-C-TTCTTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--GCTC-A-T-GCTTT--G-TAT-ATCT--GACTTTTT-TTCT--G-T-A-C---A----TTTTTTTTG-CT----AC---A-AA-TA-AT--CCTTT---AA--T-ATGCA--AAAT--A-AC-AA-C-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|11 : cAATATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCA--GACTTTTG-TTCT--G-T-A-C---AA---TTTTTTC-G-CT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCCAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|12 : A--TGA-T--C-TA-A-CTCTTG-CC-TCATT-AT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAA---------------TGAAATAATACAAATGA----------------A-----------------T-----A--------------ATCC-TA--GACAA---CT--TT-TT-GT-TT-GCGTTTA-TGA-G-TTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CATTGCT-CCGCG-TTC-TTCGG-A----T-TGCTG------CT-TCG-T-TGT-C-A-TA-GG-ATg
gi|13 : -C----GTCCTT-CACCTTGGAA---CT-AAGAAA---------------T--------------GA----------------A-----------------T-----AATACAAATGAAATAATCC-TA--GAGCA---CCCATT-TT-GT-TTG-CGTTTA-TGA-GTTAATTT-ACCCTC-A
gi|14 : acccccattctccccaccC-TCGTG--TTA-G-CTGGAC-CGCGTAAAA----T-TTTGT--C----A-CGGTCA-TTTACTTG-TAATTTTTT--CCAAAATGT-T-GGAC---A-TGAGGCAcaa
gi|15 : ggGTCATA-AGGAAATAATCC-ATTTGTAACATTA-ATA--TGA-C--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-
gi|16 : gt-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-AAACGGC
gi|2 : GTCATA-AGAAAAGAATCCATTTTGTAACATTA-ATA--TGA-TTTC-TACA-CTCT-G-C--TCACTTGT---CAACC-ATTT-C----GTC-TTGCA--ATGGAAA--CTTAAGAAA---------------T--------------GATATAAGTTAGCATGAAA-----------------T-----A--------------ATCC-TAAGGACAAGGGC---TT-TT-TTGTTCGCGTTTA-TGA-GTATATTTTATCCACCGTTT-T-GCA-C-TCCAAA-CATTGCT-CCGCG-TTC-TTCCG-A----T-CGCTG------CT-CCG-TGTGTTC-A-TA-GGCATCA-TC-ATG-AA--AATATA-T-G-CTTACCGTGGATTATG-C-GGAC-CGT---AAGAGTCT-TCTCT--C----ACCGGT-A-T----TTG-TA--TTTTT--CAAA-GTG--TAGGAC-AAA-TGAGGCAG-GT--TTTCGGTT-GT-AG--CCTTT----AG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GGGCTA-CA-AAA--CTGCCGTTAAAA-------CCAGA-----GTA-CGAATACT-A-CAAGCACA--AT-A-AGTACA--TT-GGCCT-CC-AA-AAGC-GAAG-AATGATCGT--A--C--TTTT-TCCAAA-C-A-AAG-TTTC-AA--GCATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T-----CAGAAAAATGTAA-CTCTTGGCTCTA-T-GATTT--G-TTT-AACTCAGGCTTTTG-TCCCTGG-T-A-CCA-A----TTTTTTT-C-TT----AC---A-AA-TA-ATAACCTTTTTAAAA-T-ATGCA--AATTT-A-ACGAAACGT-TCAAA-TACCGG-TACC-AT-C-AATTTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--GGCATC-CGGAATCCTCCGC-GGCGTACGGATC-GG-A-T-ACAgt
gi|3 : tgGTCATA--GGAAAGA-TTCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCGCT-GTTCACAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-AAGAAAATGAAATAATACAATT--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCC-C-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGC--TTC-TTC---A----T--GCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TATT-G-CT--CCATGG-TTA-G-C-GGAC-CGT---AAA----T-TTTCT--C----ACCGGTCA-T----TTGTTA--TTTTT--C--AAGTGGTT-GGACAAAA-TGA-GCAGAGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-A--T--TATC-AAAGACATAATGCAT--G-GG-CTA--A-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-ATAA-AGTAC-ATTT-GGCCC-TC-AA-A-GC-GA-G--AT-ATCAT--A--C--TTTT-CC--AAGC-A-AAGTTT-C-AAC-G-ATCGGAAAGGG-C-TAC-TGAAA--AATTGC---TTTG-TCTATT--T----ACAAAAAAATGT---CTCT--GCTC-A-T-GCTTTA-G-TTT-ATTT--GAC-TTTG-TTC---G-TCA-CACAA----TTTTTTT-A-AT----AC-----AA-T--AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC--AAC-T-TCAAA-TAG-GG-TACC--T-C-A--TTA-G--CGCC---TAC-C--ACTTATGC-T----GT---G-CATC-CGGATCCCTCCGCGGGCGTACGGATCGGGAA-TAACACGGC
gi|4 : gtGTCATA-AGGAAAGA---TCATT-GCAACATTAGATGAGTGA-T--CGTA-AACTC--G-CCGTCA-T-GT---CACCG-ATTTGT----GTC-TT-CA--TCGGAAA--CT-AAGAAA---------------T--------------GG----------------AAATAATTACAAATGAAGT-----A--------------ATCC-TA--GAAAA---TCT-TT-TT-GT-TTGGCGTT-A-TGA-GTT------ATACAC-ATTT-TGA-A-TGTC--AA-CATTGCT-CCGCGGTTC-TCG-G-A----TTCGCTG------CTGGCGGT-TGT-C-AATA-GG-ATCAATT-ATA-AA------TA-T-GGCTC-CGTTGG-TTA-G-G-GAAC-CGT---ACA----T-TTTGT--C----AC-GGTCA-T----GTC-TAA-TTTTT----AAAGTG--T-GGAC-AAAATGAGGCAGAGTGTT---GGG--GT-AG--CCTTT---TAG--A---AT-TCTTATC-AAAGACAT-AT---T----GG-CTA-CA-AA----TG--GT---AA-------C-AGA-----GTA--GAATACT-A-CAAGC-CAC-AT-G-AGTAC-ATTT-GACCC-TC-AA-A-GC-GA-G--AT-AGCGT--A--CTTTTTT-CCA-AA-CAA-AAG-TT-CGAA--G-ATCGGAAAGGG-C-TACTTG-AA--AA-TGCCTGTTGG-TCTATTAGT----ACAGAAATATGTAACTTCT--GCTC-A-TGGCTTT--G--TA-ATCT--GACTTTTGTTTCT--G-T-A-C---A----ATTTTTT-GCAG----ACAAGA-AA-TA-AT--CC-TT---AAA-T-G---A--AAAT--AGAC-AAAC-T-TCAAA-TA--GGTTACCGAT-C-A---TA-G--CG-C---TACGT--AC-TGTAC-TCTC-GT---G-CATC-CGGATCCTCCTGC-GGCGTACGGt
gi|5 : gtGTCATA-AGGAAAGAATCCCATTTGTAACAT-A-ATA--TGA-T--C-AA-G-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------------------------T-----A--------------ATCT-AA--GAAAA---C---TT-TT-GT-TTGGCGTTTAATGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--CA-C-TTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CT-CCG-T-TGT-C-A-TATGG-AT-A-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG---CTTT---TAG--ACCAAT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C--GA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GCGCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAA-GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAATATGTA--CTCT--G-TC-A---GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-GT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-T-AAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-A--ACTTATGC-T--C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-ATT-ACACGGCgcg
gi|6 : AACATTA--TA---GA-T--C-TA-A-CTCT-GGCC-TCACT-GT---CAACC-ATTT-C----GTC-TTTCA--T-GGAAA--C--AAGAAA---------------T--------------GA----------------ACATAATACAATATGAA-T-----A--------------ATCCCTA--GAAAA---C---TT-TT-GT-TTG-CGTTTA-TG-----TATTT-ATC-AC-ATTT---A-A-T-TC--AAACATTGCT-CCGCG-TTC-TTCGG-A----T-CGCT-------CT-CCG-T-TGT-CAA-TA-GG-ATCA-TA-ATACGA--A---TA-T-G-CT--CCGTGG-TTA-G-C-GGAC-CGT---AAC----T-TTTGT--C----ACCGGTCA-T----TGT-TA--TTTTC----AAAGTG--T--GAC-ATA-TGAGGCAGGGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAAACA--AT---T--GCGG-CTA-CA-AA----TGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CACAAT-A-AGTAC-ATTT-GGCCC-TCAAA-A-GC-GA-GAAAT-ATCGT--AACT--TTTT-CC--AA-A-ACAAG-TT-C-AAAGG-ATCGGAAAGGG-C--A-TTG-AA--AA-TGC---TTTG-TCTATTA-T----ACAG-AATATGTA--TTCT--GCTCGA-T-GCTTT--GTTTT-TTCTG-GACTTTTG-TTCT--G-T-A-CA--A----TTTTTTT-G-CT----AC---A-AA-TAGAT--CC-TT---AAA-T--TGCAT-AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-TG-C---TAC-T--ACTTATGC-TC-CGGTG--G--ATC-CGGATCCCTCCGC--GC-TAACGATC-GG-A-T-ACACGGC
gi|7 : AACATTA--TA--TGA-T----TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-CTGTCATC-TT-CA--ATGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAA-----C---TT-TT-GT-TCGG--TTTA-TGA-GTT-AT---ATCCAT-TATT-T-A-A-T-TC--AA-CATTGGGGCCGCG-TTCATTC-G-GAATGT-CGCT--------CACCG-T-TGT-C-A-TA-GA-AT-A-TT--TA-AAT-A---TA-TTG-CTC---GTGG-TTA---C-GGAC--GT---AAA----TATTTGTTGC----AC--GTCAGT----TTG-TA--TTTTT--CAAA-GTG--T-GGAT-G----GAGGT----T--T---GGGT-GT-AG--CCTTT---TAGG-ACC-AT-T---ATC-AAAGA-AT-AT---T--G-GGGCTATCACAA---CTGCCGT--AA--------C-A-A-----GTA-CGAATACT-AACAAGC--AC-AT-A-AGT-C--TTT-GGGCC-CT-AA-A-GC-GA-G-AAT-ATCGT--A--CT-TTTT-CC--A----A-AAGTTT-C-AA--G-ATGGAAAAGGG-CGTACTTG-AA--AA-TGC---TTTGTTCTATTA-CATTAACAGAAATATA-A--C-CT--TCTC-ATT-GCTTTTGG-TT---TTT--GACTTTGG-TTCT--G-T-A-C---AATTTTTTTTTT-G-CT----AC---ATAA-TA-AT--CCTTT---AAA-T-ATGC---AAAT--A-AC-AAAC-C-TC-AA-TA--GG-TACT-AT-CAA--TTA-GC-CGCC---TA--T--ACTTATGCTTC-C-GTG--G-CAT--CGGAT--CTCTGCTGGCGTACGGAT-GGG-T-T-ACACGg
gi|8 : ACT-GT---CAACC-ATTT-C----GTC-TT-CA--T-GGAAA--CT-------------------------------------GA----------------A-----------------T-----A--------------ATCC-TA--GACAA---C---TT-TTTGT-TTTGCGCATA-TGA-TGTTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CA
gi|8 : ---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA--GAATACT-A-CAAGC-CAC-AT-A-AGTACA-----------CC-AA-A-GC-GT-G-AAA-TTCGT--A--C--TTTTTCC--AAGC-A-AAG-TT-C-AA--G-ATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T----ACAGAAAAATGCA--CTCT--GTTC-A-A-GCATT--G-TTTTATCT--GACTTTTG-TTCT--G-T-A-A---A----TTTTTTTTA-GT----AC---A-AA-TA-AT--CCTTT---AAAATGATGCA--AA-T--A-AC-AAAC-TGTCAGACTA--GG-TAAC-ATGC-AA-TTAAGC-CACCG--TAT-CTGACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTGCGGATCGGG-A-T-ACACGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggctacaaactgccgtaaacagagtagaatactacaagccacataagtacaccaaagcgtgaaattcgtactttttccaagcaaagttcaagatcggaaaggctacttgaataatgctttgtctattatacagaaaaatgcactctgttcaagcattgttttatctgacttttgttctgtaaattttttttagtacaaataatcctttaaaatgatgcaaataacaaactgtcagactaggtaacatgcaattaagccaccgtatctgacttatgctccgtggcatccggatccctccgcggcgtgcggatcgggatacacggcgt
gi|9 : actgtcaaccatttcgtcttcatggaaactgaataatcctagacaactttttgttttgcgcatatgatgttatttatccacattttaacttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-T----TTG-TA--TTTTT--CAAT-GTA--T-GGAC-AAA-TGAGGCAGATT--T---TTGTTGT-AG--TCGTT---TAG--ACC-AT-T--TATCCAAAGACAT-AG---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTAC-ATTT-GGCCC-TC-AA-A-GCTGT-G-AAT-ATCGT--A--CTTTTTT-CG--AG-C-A-AAG--T-C-AA--G-ATCGGAAAGGG-C-TACTTGAAT--AA-T-----CTTG-TCTA-TA-T----ACA-ATAAATGCG--CTCT--GTTC-A-A-GCTTT--A-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----ATTTTTT-GTTT----AC---A-AA-TG-AA--CCTTT---AGA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TA-C-AT-C-A--TTA-TC-CGCC---TAC-C--ATCT-TGC-TC-C-GTG--G-CACC-CGGAT-CCTCCGC-GGCGTTCGGAT-GGG-A-T-ACACGGCgt
blockSeqs : . A A GA AG . TT G C A T G G T TCA . G TGTC C G CCTT . T TGGAAATAATTACAAATGAAGTA C AG GGG CCA . T G CG A . T T C TG C C G CA A G G A GGAATG T GCTG G G T A A T C C A . C AATA T T G TACC A TG T . GTA AGTC A G TG . C G TTAC T AT CC A GT A AAA A A GT TTC T . . . G A T CT C A GCA GC G T C AC TA . C . . . A A A A . AA . . A . A T A AA G . AC TT T CA GC C T T G AG C . G A . T CTG T G ATTA T T AC TG T TG TG T T CA T TG . C . AATTT TGCT AAG T . G AA TTA A G T T G G G G C CC T G G A AT A . G CTG T T T G . G . G A T A
blockSeqs : . A C A . . . . . . . . . . . . . . . T AT . . TGATATAAGTTAGCATGAAATA . . . CT . T . GG . . A . . T . C . . . . . . GGA . GCTG . . . . . . . C . . . TA . . . CTC . G . . . . . C . . C . . . A CA A T . AA . A . . . . . . . . T . . . . G G . . C . . . . . . . . . . . A . . . . . . . A . . . TT . CA CA . T . . C . . . A . . . . . . T T A . G TT A . . G . . . . . ACAA GCAG . . . . . . . . . . . . . . . G . . . . A . . . GT T . . . . . . T . . .
blockSeqs : . A C A . . . . . . . . . . . . . . . . TC . . TGAACATAATACAATATGAATA . . . T . . . GG . . T . . T . . . . . . . . CGA . GCT . . . . . . . C . . . A . . . CCG . G . . . . . C . . C . . . . CA A . . AA . A . . . . . . . . T . . . . G . . . C . . . . . . . . . . . A . . . . . . . A . . . T . A GC . . . . . . . . A . . . . . . A T . . . T . . . . . . . . . CAA TAGT . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . .
blockSeqs : . . C A . . . . . . . . . . . . . . . . TT . . ATGAAATAATACAATTGAATA . . . . . . . GG . . T . . T . . . . . . . . GGA . GCT . . . . . . . C . . . A . . . CCC . G . . . . . G . . C . . . . CA A . . AA . G . . . . . . . . T . . . . G . . . C . . . . . . . . . . . A . . . . . . . A . . . . . . C . . . . . . . . A . . . . . . A T . . . T . . . . . . . . . AA GTTT . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . AT . . TGAAATAATACAAATGAATA . . . . . . . TG . . T . . T . . . . . . . . GA . GCT . . . . . . . . . . . A . . . CC . G . . . . . G . . C . . . . CA A . . AT . A . . . . . . . . T . . . . G . . . C . . . . . . . . . . . A . . . . . . . A . . . . . . C . . . . . . . . A . . . . . . T T . . . T . . . . . . . . . AA GCT . . . . . . . . . . . . . . . . . . . . . . . . C T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . TGAATAATACAAATGAAATA . . . . . . . G . . T . . T . . . . . . . . GA . CT . . . . . . . . . . . . . . . CC . G . . . . . G . . . . . . . C . . . AA . . . . . . . . . . T . . . . G . . . C . . . . . . . . . . . A . . . . . . . A . . . . . . C . . . . . . . . A . . . . . . T T . . . T . . . . . . . . . A CTT . . . . . . . . . . . . . . . . . . . . . . . . C T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . TGAATA . . . . . . . G . . . . . T . . . . . . . . A . CA . . . . . . . C . . . . . . . G . . . . . . . . . . . G . . . . . . . . . . . . . . . G . . . C . . . . . . . . . . . A . . . . . . . A . . . . . . A . . . . . . . . . . . . . . . T T . . . T . . . . . . . . . A AAT . . . . . . . . . . . . . . . . . . . . . . . . A T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . . TGATA . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . T C . . . A . . . . . . . . . A GGT . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . .
blockSeqs : . . . . . . . T . . GAATA . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A C . . . A . . . . . . . . . A GCT . . . . . . . . . . . . . . . . . . . . . . . . T C . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . A GCT . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : **** T*** ** T** GCT******* A***** CC** G** **** CA** ** *** ** T* G*** C*** ******* ***** A* ** ** *** T** GCT****** *** ** ** *** **
originalCons : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA--TTGGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTG------CTGCCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AA--A---TA-T-G-CTC-CCGTGG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTT--CAAAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACAATTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-A-T-GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-G-NT----AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
finalCons : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CAT---GGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTTT--A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTGCT-------CCG-T-TGT-C-A-TA-GG-ATCA-TT-ATA-AAA-----TA-T-G-CTCC--GTGG-TTAG--C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTG-TA--TTTTTCA--AAAGTG--T-GGAC-AAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACAT-AT---TG---GG-CTA-CA-AAC---TGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGC-CAC-AT-A-AGTACA-TTT-GGCCC-TC-AA-A-GC-GA-G-AAT-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TT-C-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGTA--CTCT--GCTC-AT--GCTTT--G-TTT-ATCT--GACTTTTG-TTCT--G-T-A-C---A----TTTTTTTGCT------AC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AAAT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTG--G-CATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222 11111111 2222 111 222222 1 1111 1111 11 11 11 1 11 111 1111 11111111 11111 11 11 1 111 111 11111111 222222222 111 111
lowQualScore : 6 7 0 88 66 4 66 4 4 4 4 4 4 4 777 4 3 1111 3 7 555 8 55 44 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 55 777 000 4 4 4 77 4 4 0 8 4 4 555 8 8 4 66 4 5 5 5 99999999 5 2 2222 5 5 888 5 5 4 5 5 5 111111 0 5 66 77 5 5 666 5 5 888 0000 5 2 66 0000 2 4 9999 4 00 777 11 00 4 2 8 2 66 888 0 5 66 888 11 5 5 000 5 5 777 66 4 8 4 4 2222 55 33333333 4 00000 4 4 4 4 4 4 4 4 55 4 4 4 4 4 4 0 4 8 55 55 55 4 55 999 4 2 4 99 4 4 4 0 55 88 111 4 4 8888 1 88888 55 7 111 88 3 55 3 3 3 55 3 3 3 77777777 555555555 666 3 3 3 55 000 3 3 88 3 55 3 3 3 3 3 88 3 3 3 3 88 3 3 0 000 8888 1 3 3 3 7777 3 6 3 7 3
lowQualScore : . . . .. .. . .. . . . . . . . ... . . .... . . ... . .. .. ....................................................................................... . .. ... ... . . . .. . . . . . . ... . . . .. . . . . ........ . . .... . . ... . . . . . . ...... . . .. .. . . ... . . ... .... . . .. .... . . .... . .. ... .. .. . . . . .. ... . . .. ... .. . . ... . . ... .. . . . . .... .. ........ . ..... . . . . . . . . .. . . . . . . . . . .. .. .. . .. ... . . . .. . . . . .. .. ... . . .... . ..... .. . ... .. . .. . . . .. . . . ........ ......... ... . . . .. ... . . .. . .. . . . . . .. . . . . .. . . . ... .... . . . . .... . . . . .
lowQualScore : 7 3 8 22 11 4 11 4 4 4 4 4 4 0 000 0 6 4444 6 3 000 0 55 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 000 555 0 0 0 55 0 0 7 3 0 0 333 9 9 4 11 4 0 0 0 88888888 0 5 5555 0 0 888 0 0 3 7 7 7 666666 0 0 99 55 0 0 222 0 0 888 6666 0 5 99 6666 5 4 4444 4 66 222 00 66 4 0 9 0 99 888 0 0 99 888 99 0 0 111 0 0 888 11 4 0 0 0 6666 55 88888888 0 00000 0 0 0 0 0 0 0 0 55 0 0 0 0 0 0 8 0 0 55 55 00 0 00 555 0 0 0 55 0 0 0 8 55 88 000 0 0 5555 0 11111 00 3 999 66 6 00 6 6 6 00 6 6 6 44444444 333333333 444 6 6 6 00 000 6 6 66 6 00 6 6 6 6 6 66 6 6 6 6 66 6 6 5 000 2222 3 6 6 6 7777 3 7 6 3 6
consensus : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA---T-GGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTGCTG---CCGT-TGT-CAA--TA-GG-ATCA-TT-ATA-AA--A---TAT-G-CT--CC-GT-GG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTGT-A--TTTTT--CAAAAGTG--T-GGACAAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACATA-T---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTAC-A--TTTGGCCC-TC-AA-A-GC-G-AGAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TTC-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGT-A--CTCT--GCTC-A-T-GCTTT--GTTT-A--T-CTG-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-----G-C-TAC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AA-AT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
Reference ( family-1436 ) : GTCATA-AGGAAAGAATCCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA---T-GGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TT-GT-TTGGCGTTTA-TGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGCG-TTC-TTC-G-A----T-CGCTGCT----CCGT-TGT-CA---TA-GG-ATCA-TT-ATA-AA--A---TAT-G-CT--CC-GT-GG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTGT-A--TTTTT--CAAAAGTG--T-GGACAAA-TGAGGCAGAGT--T---GGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAGACATA-T---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTAC-A--TTTGGCCC-TC-AA-A-GC-G-AGAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TTC-AA--G-ATCGGAAAGGG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAANATGT-A--CTCT--GCTC-A-T-GCTTT--GTTT-A--T-CTG-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-----G-C-TAC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AA-AT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGC
gi|1 : GTCATACAGGAAAGAATCC-ATTTTTAACATTA-ATA--TGAAT--C-TA-A-CTCT-G-CC-TCACT-GT---CAACCCATTT-CA---GTC-TT-CA---T-GGAAAGTCT-AAAAAA---------------T--------------AA----------------AATAATAACAAA------TGACAAA--------------ATCC-TA--GAAGA---C---TTGTT-GT-TTTGCGTTTA-TGACGTGTATTT-ATCCAC-ATTTGT-ATA-T-TC--AA-CATTGCT-CCGCG-TCT-TTC-GGA----T-CGCTGTCGTACCTGC-TTT-CAACAGA-GT-ATCA-TTCATA-AATGA---T-T-G-CT--CC-GT-GG-TTA-GTC-GGACTCGT---AAA----T-TTT-T--CTTCGACCGGGCT-C----TTGT-A--TTTTCAACAAGAGTG--T-GCACAAA-TGAGTCCGAGT--T---GAGTTGTCAGATCCTATCCATAGGAACC-AGGT--TATC-AAA-ACATA-T---TCCA-GG-CTA-CA-AAGACTTGCCGT--AAAAGCTAAGC-GGAAGTTAGTAGCGAAGACTTA-CAAGCCAC-A-T-ATAG-GC-GATTTTGACCCATC-AACA-AT-G-AGAA-TTATCTTTAA--C--TTTT-CC--AA-G-C-AAG-TTC-AA--G-ATCGGAAAGGGGC-TACTTGAAAGCAACTGCG--TTTG-CC-ATTA-T----ACAGAAAAATG--A--CTCT--GCTC-A---GCTTT--GTTT-A--T-CTG-A--TTTG-TTCT--GGT-AAT---A----TTTTTTTTTTTTG---TAC---A-AAATA-AT--CCTTTT--AAG-T-ATGCATGAA-ATTAG-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GCTCGTCGATTCC-C--AC-TAGGC--C-C-TT-GGAGCATCGCGGATCCCTCCGC-GGCGTA-GGA-CGGG-ATT-ACACGG
gi|10 : G-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-TAAGCCAC-A-T-A--GTAC-A--TTTGGCCC-TC-AA-A-GC-G-AGAA-T-ATCGT--A--C--TTTT-TCCAAA-C-A-ATG-TTC-AA--G-ATCAGAAAGGG-C-TTCTTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAAATATGT-A--CTCT--GCTC-A-T-GCTTT--GTAT-A--T-CTG-ACTTTTT-TTCT--G-T-A-C---A----TTTTTTTT----G-C-TAC---A-AA-TA-AT--CCTTT---AA--T-ATGCA--AA-AT--A-AC-AA-C-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|11 : cAATATGT-A--CTCT--GCTC-A-T-GCTTT--GTTT-A--T-CAG-ACTTTTG-TTCT--G-T-A-C---AA---TTTTTTC-----G-C-TAC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AA-AT--A-AC-AAAC-T-TCCAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-T--ACTTATGC-TC-C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-ACACGGCg
gi|12 : A--TGA-T--C-TA-A-CTCTTG-CC-TCATT-AT---CAACC-ATTT-C----GTC-TT-CA---T-GGAAA--CT-AAGAAA---------------TGAAATAATACAAATGA----------------A-----------------T-----A--------------ATCC-TA--GACAA---CT--TT-TT-GT-TT-GCGTTTA-TGA-G-TTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CATTGCT-CCGCG-TTC-TTCGG-A----T-TGCTGCT----TCGT-TGT-CA---TA-GG-ATg
gi|13 : -C----GTCCTT-CACCTT-GGAA---CT-AAGAAA---------------T--------------GA----------------A-----------------T-----AATACAAATGAAATAATCC-TA--GAGCA---CCCATT-TT-GT-TTG-CGTTTA-TGA-GTTAATTT-ACCCTC-A
gi|14 : acccccattctccccacc-G-CT--C--GT-G--TTA-G-CTGGAC-CGCGTAAAA----T-TTTGT--C----A-CGGTCA-TTTACTTGT-AATTTTTT--CCAAAATGT-T-GGAC--A-TGAGGCAcaa
gi|15 : gGTCATA-AGGAAATAATCC-ATTTGTAACATTA-ATA--TGA-C--C-TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-
gi|16 : gt-CGGATCCCTCCGC-GGCGTACGGATCGGG-A-T-AAACGGC
gi|2 : GTCATA-AGAAAAGAATCCATTTTGTAACATTA-ATA--TGA-TTTC-TACA-CTCT-G-C--TCACTTGT---CAACC-ATTT-C----GTC-TTGCAA--T-GGAAA--CTTAAGAAA---------------T--------------GATATAAGTTAGCATGAAA-----------------T-----A--------------ATCC-TAAGGACAAGGGC---TT-TT-TTGTTCGCGTTTA-TGA-GTATATTTTATCCACCGTTT-T-GCA-C-TCCAAA-CATTGCT-CCGCG-TTC-TTCCG-A----T-CGCTGCT----CCGTGTGTTCA---TA-GGCATCA-TC-ATG-AA--AATATAT-G-CTTACC-GT-GGATTATG-C-GGAC-CGT---AAGAGTCT-TCTCT--C----ACCGGT-A-T----TTGT-A--TTTTT--CAAA-GTG--TAGGACAAA-TGAGGCAG-GT--TTTCGGTT-GT-AG--CCTTT----AG--ACC-AT-T--TATC-AAAGACATA-T---T--G-GGGCTA-CA-AAA--CTGCCGTTAAAA-------CCAGA-----GTA-CGAATACT-A-CAAG-CACAA-T-A-AGTAC-A---TTGGCCT-CCAAA-A-GC-GAAGAA-TGATCGT--A--C--TTTT-TCCAAA-C-A-AAGTTTC-AA--GCATCGGAAA-GG-C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T-----CAGAAAAATGTAA--CTCTTGGCTCTA-T-GATTT--GTTT-AACT-CAG-GCTTTTG-TCCCTGG-T-A-CCA-A----TTTTTTT-----C-T-TAC---A-AA-TA-ATAACCTTTTTAAAA-T-ATGCA--AATTT--A-ACGAAACGT-TCAAA-TACCGG-TACC-AT-C-AATTTA-GC-CGCC---TAC-C--ACTTATGC-TC-C-GTGG--GCATC-CGGAATCCTCCGC-GGCGTACGGATC-GG-A-T-ACAgt
gi|3 : tgGTCATA--GGAAAGA-TTCCATTTGTAACATTA-ATA--TGA-T--C-TA-A-CTCT-G-CC-TCGCT-GTTCACAACC-ATTT-C----GTC-TT-CA---T-GGAAA--CT-AAGAAAATGAAATAATACAATT--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAAAA---C---TT-TTTGT-TTG-CGTTTA-TGA-GTT-ATTT-ATCC-C-ATTT-T-A-A-T-TC--AA-CATTGCT-CCGC--TTC-TTC---A----T--GCTGCTG---CCGT-TGT-CA---TA-GG-ATCA-TT-ATA-AA--A---TATTG-CT--CC-AT-GG-TTA-G-C-GGAC-CGT---AAA----T-TTTCT--C----ACCGGTCA-T----TTGTTA--TTTTT--CAA--GTGGTT-GGACAAAATGAG-CAGAGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-AT-T---ATC-AAAGACATAATGCAT--G-GG-CTA--A-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGCCAC-A-TAA-AGTAC-A--TTTGGCCC-TC-AA-A-GC-G-AG-A-T-ATCAT--A--C--TTTT-CC--AAGC-A-AAGTTTC-AAC-G-ATCGGAAAGGG-C-TAC-TGAAA--AATTGC---TTTG-TCTATT--T----ACAAAAAAATGT----CTCT--GCTC-A-T-GCTTTA-GTTT-A--T-TTG-AC-TTTG-TTC---G-TCA-CACAA----TTTTTTT-----A-A-TAC-----AA-T--AT--CCTTT---AAA-T-ATGCA--AA-AT--A-AC--AAC-T-TCAAA-TAG-GG-TACC--T-C-A--TTA-G--CGCC---TAC-C--ACTTATGC-T----GT----GCATC-CGGATCCCTCCGCGGGCGTACGGATCGGGAA-TAACACGGC
gi|4 : gtGTCATA-AGGAAAGA---TCATT-GCAACATTAGATGAGTGA-T--CGTA-AACTC--G-CCGTCA-T-GT---CACCG-ATTTGT----GTC-TT-CA---TCGGAAA--CT-AAGAAA---------------T--------------GG----------------AAATAATTACAAATGAAGT-----A--------------ATCC-TA--GAAAA---TCT-TT-TT-GT-TTGGCGTT-A-TGA-GTT------ATACAC-ATTT-TGA-A-TGTC--AA-CATTGCT-CCGCGGTTC-TCG-G-A----TTCGCTGCTGG--CGGT-TGT-CAA--TA-GG-ATCAATT-ATA-AA------TAT-GGCT--CC-GTTGG-TTA-G-G-GAAC-CGT---ACA----T-TTTGT--C----AC-GGTCA-T----GTCT-AA-TTTTT----AAAGTG--T-GGACAAAATGAGGCAGAGTGTT---GGG--GT-AG--CCTTT---TAG--A---AT-TCTTATC-AAAGACATA-T---T--G-G--CTA-CA-AA----TG--GT--AA--------C-AGA-----GTA--GAATACT-A-CAAGCCAC-A-T-G-AGTAC-A--TTTGACCC-TC-AA-A-GC-G-AG-A-T-AGCGT--A--CTTTTTT-CCA-AA-CAA-AAG-TTCGAA--G-ATCGGAAAGGG-C-TACTTG-AA--AA-TGCCTGTTGG-TCTATTAGT----ACAGAAATATGT-AACTTCT--GCTC-A-TGGCTTT--G-TA-A--T-CTG-ACTTTTGTTTCT--G-T-A-C---A----ATTTTTT-----G-CAGACAAGA-AA-TA-AT--CC-TT---AAA-T-G---A--AA-AT--AGAC-AAAC-T-TCAAA-TA--GGTTACCGAT-C-A---TA-G--CG-C---TACGT--AC-TGTAC-TCTC-GT----GCATC-CGGATCCTCCTGC-GGCGTACGGt
gi|5 : gtGTCATA-AGGAAAGAATCCCATTTGTAACAT-A-ATA--TGA-T--C-AA-G-CTCT-G-CC-TCACT-GT---CAACC-ATTT-C----GTC-TT-CA---TTGGAAA--CT-AAGAAA---------------T--------------GA----------------------------------T-----A--------------ATCT-AA--GAAAA---C---TT-TT-GT-TTGGCGTTTAATGA-GTTTATTT-ATCCAC-ATTT-T-A-A-T-TC--CA-C-TTGCT-CCGCG-TTC-TTC-G-A----T-CGCTGCT----CCGT-TGT-CA---TATGG-AT-A-TT-ATA-AA--A---TAT-G-CT--CCCGT-GG-TTA-G-C-GGAC-CGT---AAA----T-TTTGT--C----ACCGGTCA-T----TTGT-A--TTTTT--CAAAAGTG--T-GGACAAA-TGAGGCAGAGT--T---GGGT-GT-AG---CTTT---TAG--ACCAAT-T--TATC-AAAGACATA-T---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C--GA-----GTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTACAA--TTTGCGCC-TC-AA-A-GC-G-AGAA-T-ATCGT--A--C--TTTT-CC--AA-C-A-AAG-TTC-AA--G-ATCGGAAA-GG-C-TACTTGAAA--AA-TGC---TTTG-TCTATTA-T----ACAGAAATATGT-A--CTCT--G-TC-A---GCTTT--GTTT-A--T-CTG-ACTTTTG-TTCT--G-T-A-C---A----TTTTTTT-----G-G-TAC---A-AA-TA-AT--CCTTT---AAA-T-ATGCA--AA-AT--A-AC-AAAC-T-T-AAA-TA--GG-TACC-AT-C-A--TTA-GC-CGCC---TAC-A--ACTTATGC-T--C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTACGGATCGGG-ATT-ACACGGCgcg
gi|6 : AACATTA--TA---GA-T--C-TA-A-CTCT-GGCC-TCACT-GT---CAACC-ATTT-C----GTC-TTTCA---T-GGAAA--C--AAGAAA---------------T--------------GA----------------ACATAATACAATATGAA-T-----A--------------ATCCCTA--GAAAA---C---TT-TT-GT-TTG-CGTTTA-TG-----TATTT-ATC-AC-ATTT---A-A-T-TC--AAACATTGCT-CCGCG-TTC-TTC-GGA----T-CGCT-CT----CCGT-TGT-CAA--TA-GG-ATCA-TA-ATACGA--A---TAT-G-CT--CC-GT-GG-TTA-G-C-GGAC-CGT---AAC----T-TTTGT--C----ACCGGTCA-T----TGTT-A--TTTTC----AAAGTG--T-G-ACATA-TGAGGCAGGGT--T---TGGT-GT-AG--CCTTT---TAG--ACC-AT-T--TATC-AAAAACA-A-T---T--GCGG-CTA-CA-AA----TGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGCCAC-AAT-A-AGTAC-A--TTTGGCCC-TC-AA-AAGC-G-AGAAAT-ATCGT--AACT--TTTT-CC--AA-A-ACAAG-TTC-AAAGG-ATCGGAAAGGG-C--A-TTGAAA--A--TGC---TTTG-TCTATTA-T----ACAGAA-TATGT-A--TTCT--GCTCGA-T-GCTTT--GTTT-T--TTCTGGACTTTTG-TTCT--G-T-A-C---AA---TTTTTTT-----G-C-TAC---A-AA-TAGAT--CC-TT---AAA-T--TGCAT-AA-AT--A-AC-AAAC-T-TCAAA-TA--GG-TACC-AT-C-A--TTA-GC-TG-C---TAC-T--ACTTATGC-TC-CGGT-G--G-ATC-CGGATCCCTCCGC--GC-TAACGATC-GG-A-T-ACACGGC
gi|7 : AACATTA--TA--TGA-T----TA-A-CTCT-G-CC-TCACT-GT---CAACC-ATTT-CTGTCATC-TT-CAA--T-GGAAA--CT-AAGAAA---------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GAA-----C---TT-TT-GT-TCGG--TTTA-TGA-GTT-AT---ATCCAT-TATT-T-A-A-T-TC--AA-CATTGGGGCCGCG-TTCATTC-G-GAATGT-CGCT-CA----CCGT-TGT-CA---TA-GA-AT-A-TT--TA-AAT-A---TATTG-CT--C--GT-GG-TTA---C-GGAC--GT---AAA----TATTTGTTGC----AC--GTCAGT----TTGT-A--TTTTT--CAAA-GTG--T-GGATG----GAGGT----T--T---GGGT-GT-AG--CCTTT---TAGG-ACC-AT-T---ATC-AAAGA-ATA-T---T--G-GGGCTATCACAA---CTGCCGT--AA--------C-A-A-----GTA-CGAATACT-AACAAGC-AC-A-T-A-AGT-C-T--TTGGGCCC-T--AA-A-GC-G-AGAA-T-ATCGT--A--CT-TTTT-CC--A----A-AAGTTTC-AA--G-ATGGAAAAGGG-CGTACTTG-AA--AA-TGC---TTTGTTCTATTA-CATTAACAGAAATATA--A--C-CT--TCTC-ATT-GCTTTTGGTT-----T-TTG-ACTTTGG-TTCT--G-T-A-C---AATTTTTTTTTT-----G-C-TAC---ATAA-TA-AT--CCTTT---AAA-T-ATGC---AA-AT--A-AC-AAAC-C-TC-AA-TA--GG-TACT-AT-CAA--TTA-GC-CGCC---TA--T--ACTTATGCTTC-C-GT-G--GCAT--CGGAT--CTCTGCTGGCGTACGGAT-GGG-T-T-ACACGg
gi|8 : ACT-GT---CAACC-ATTT-C----GTC-TT-CA---T-GGAAA--C-----------------------T--------------GA----------------A-----------------T-----A--------------ATCC-TA--GACAA---CT--TT-TT-GT-TTTGCGCATA-TGA-TGTTATTT-ATCCAC-ATTT-T-A-ACT-TC--AA-CA
gi|8 : ---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA--GAATACT-A-CAAGCCAC-A-T-A-AGTAC-A--C---------C-AA-A-GC-G-TGAA-A-TTCGT--A--C--TTTTTCC--AAGC-A-AAG-TTC-AA--G-ATCGGAAAGG--C-TACTTGAAT--AA-TGC---TTTG-TCTATTA-T----ACAGAAAAATGC-A--CTCT--GTTC-A-A-GCATT--GTTTTA--T-CTG-ACTTTTG-TTCT--G-T-A-A---A----TTTTTTTTA---G---TAC---A-AA-TA-AT--CCTTT---AAAATGATGCA--AA--T--A-AC-AAAC-TGTCAGACTA--GG-TAAC-ATGC-AA-TTAAGC-CACCG--TAT-CTGACTTATGC-TC-C-GT-G--GCATC-CGGATCCCTCCGC-GGCGTGCGGATCGGG-A-T-ACACGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggctacaaactgccgtaaacagagtagaatactacaagccacataagtacaccaaagcgtgaaattcgtactttttccaagcaaagttcaagatcggaaaggctacttgaataatgctttgtctattatacagaaaaatgcactctgttcaagcattgttttatctgacttttgttctgtaaattttttttagtacaaataatcctttaaaatgatgcaaataacaaactgtcagactaggtaacatgcaattaagccaccgtatctgacttatgctccgtggcatccggatccctccgcggcgtgcggatcgggatacacggcgt
gi|9 : actgtcaaccatttcgtcttcatggaaactgaataatcctagacaactttttgttttgcgcatatgatgttatttatccacattttaacttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-T----TTGT-A--TTTTT--CAAT-GTA--T-GGACAAA-TGAGGCAGATT--T---TTGTTGT-AG--TCGTT---TAG--ACC-AT-T--TATCCAAAGACATA-G---T--G-GG-CTA-CA-AA---CTGCCGT--AAA-------C-AGA-----GTA-CGAATACT-A-CAAGCCAC-A-T-A-AGTAC-A--TTTGGCCC-TC-AA-A-GCTG-TGAA-T-ATCGT--A--CTTTTTT-CG--AG-C-A-AAG--TC-AA--G-ATCGGAAAGGG-C-TACTTGAAT--AA-T-----CTTG-TCTA-TA-T----ACA-ATAAATGC-G--CTCT--GTTC-A-A-GCTTT--ATTT-A--T-CTG-ACTTTTG-TTCT--G-T-A-C---A----ATTTTTT-----GTT-TAC---A-AA-TG-AA--CCTTT---AGA-T-ATGCA--AA-AT--A-AC-AAAC-T-TCAAA-TA--GG-TA-C-AT-C-A--TTA-TC-CGCC---TAC-C--ATCT-TGC-TC-C-GT-G--GCACC-CGGAT-CCTCCGC-GGCGTTCGGAT-GGG-A-T-ACACGGCgt