lowQualScore : 11 22222 2222 222222 22 1 44444444444444 1 11111 11 111111 111111111 111111 11111111111 111111 111 1 3333333 2222222 111111 55555555555 11111111111111111111 111111 111 4444444444444444444444444 1111 11 22222222222 33333333 11
lowQualScore : 33 00000 2222 4 444444 7 00 3 6 77777777777777 4 4 4 4 2 2 1 4 66666 4 777 66 888 4 4 555 22 4 4 4 55 6 4 4 555555 111111111 111111 4 0 4 99999999999 8 4 000000 4 4 88 1 4 2 555 3 55 6 1 4 4 2 777 3333333 7 4 3333333 4 4 4 111111 4 8 3 3 3 77777777777 3 3 77777777 3 555 77 77 44 3 3 3 3 6666 3 99999999999999999999 0 3 3 44 3 44 6 77 000000 3 5 55 111 4444444444444444444444444 3 555 999999 44 3333 3 3 1 22 3 33333333333 6 999 4 3 3 3 44444444 3 3 1 77 3 3 4 11 3
lowQualScore : .. ..... .... . ...... . .. . . .............. . . . . . . . . ..... . ... .. ... . . ... .. . . . .. . . . ...... ......... ...... . . . ........... . . ...... . . .. . . . ... . .. . . . . . ... ....... . . ....... . . . ...... . . . . . ........... . . ........ . ... .. .. .. . . . . .... . .................... . . . .. . .. . .. ...... . . .. ... ......................... . ... ...... .. .... . . . .. . ........... . ... . . . . ........ . . . .. . . . .. .
lowQualScore : 33 77777 7777 7 333333 3 77 3 7 77777777777777 4 4 4 4 3 0 0 4 22222 4 222 11 666 4 4 999 22 4 0 4 55 0 1 0 777777 333333333 555555 0 7 0 00000000000 6 0 000000 0 0 55 5 0 5 888 6 00 3 8 4 4 6 888 8888888 7 4 1111111 0 0 0 555555 0 2 6 6 6 66666666666 6 6 77777777 6 888 99 99 66 3 3 3 5 8888 3 22222222222222222222 3 3 3 66 3 66 3 55 555555 6 8 00 444 0000000000000000000000000 3 888 666666 66 8888 3 3 4 22 1 77777777777 7 222 8 3 3 3 99999999 5 3 0 99 3 6 0 11 0
consensus : AAATAAAGCAATTCTT-CCAAA--A-AAAGTNTTT-AATG-CAAGAAAGTAA-TACA-ATG-AATA-------------CAAAAACATTTTCTT-AAA-C-TCT-GACTATAGATAA-GACAAGTNA---AATT-AGT--GTG--GTG--ATCT-A-CCTG-T-CG--TAT-CACAAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGG---GAATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAGT-CTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCCGA-AAA-CA--CACGTCCTNAAG-CAACAGAAGTTGCTGG-TATGGCCAC---G----AAGTACTCGGCCA-TACTTGAC-A---GAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAACT-C-ATTG---------GAACG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAACT-ATC-AACCA---CG-TTG--T-AG-ATG--T-------TATT-GT-CCGT--A-CCA--CCTTTCGATTCCG------CCAT-TTTGTA--TCTGT---TTGAAT----C---TC-----G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTATTTT-GT-----ACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TANCGTTTC
Reference ( gi|2 ) : AAATAAAATAATTCTTCCCAAA--A-AAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATA-------------AAAAAACATTTTCTT-AAA-C-TCT-GAATATAGATAA-AACAAGTGA---AATT-AGT--GTG--GTG--GTCT-A-CCTG-T-CG--TAT-CACAAGAGATTTAGGTGTA-AA--GTTCATCCTAGAAGATCA-TCCG---AAATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAGT-CTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTTATTGACGATGT-CTCCTGCTTCCGA-TAA-CA--CACATCCTAAAG-CAACAGAAGTTGCTGG-TATTGCCAC---G----ATCTACTCAGCCA-TACTTGAA-A---AAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAACT-C-ATTGAA------AGAACG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAACT-ATC-AATCA---TG-TTG--T-AG-ATG--T-------TATT-GT-CCGT--A-CCA--CTTTTCAATTCCG------CCAT-TTTGTA--TCTGT---TTGAAT----G---TC-----G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTTGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCAAACCGAAAA-TT-A-AGTATTTT-TC-----ACCGTAACTGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|3 : AAATAAAGCAATTCTTGCCAAACAA-AAAGTTTTT-AATGACAAGAAAGTAA-TACA-ACG-AATG-------------CAAAAACATTTTCTT-AAA-C-TCT-GACTATAGATAA-GACAAGTAA---AATT-GGT--GTG--GAT--ATCT-A-CCTG-T-CG--TAT-CACAAGAGATTTAGGTGTA-AA--GTTCATCCTAAAATATCA-TCAG---GAATTAC-AAT-----GTTACA------CTTAA-AAAA-TATC-----------AATTAGT-CTATC---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTCATTGACGATGT-CTCCTGCTTCCGG-TAA-CA--CTCGTCCTAAAG-CAACGGAAGTTGCTGG-TATGGCCAC---G----AAGTCCTCAGCCA-TACTTGAC-A---GAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAACT-C-ATTG---------GAACG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--TC--CA-GACAACT-ATC-AACCA---CG-TTG--T-AG-ATG--T-------TATT-GT-CCGT--A-CCA--CCTTTTGATTATG------CCAT-TTTGTA--TCTGT---TTGAAT----C---TC-----G---------ATC-GGAA---TA------GG--AAAAT----AGCAAGCAC-TG-TTCGCCAAT-CAA-AAA
gi|19 : tacaattagtactagttttcgatacgatacactcatatatgaaataaactttaAAATAAG-CAATT-TTCTCCAA--A-CAAGTCTTTCAATG-CAAGAAAGTAAATACACATGGAATACCTTACTACATACAAAAAAC-TTTTCTT-AAA-CTTCT-GACTATAGAT-T-GACAAGTTAATTAATTCAGC--GTT--GTG--GT-T-ATCTTA-C-TGATTATCCACAAAAAGATTAGGt
gi|10 : gatatccccatatataataaaaaaactttaAAAATAAATTT----AAA--ATAAAGCATTC-A----CA-GAAAGTA--TACA-ATC-AA-------------------AACATTTTATT-TAA-C-TCT-GACTAAAGATTCTAACAAGTTA---AATT-AGT--GTG--GTG--ATCT-A-CCT----TGATTAT-CACAAAAGATTGGGGTGTA-CA--GTTCATCCAAAAAGATCA-TCTG---GAATTAC-AA------GTTACA------CTTAACAAAG-TA-C-----------AATAAGTTCTACA---TTGTCAGG-TGAGAAAA-T-GCCCTTTG-CGCATTGACGATGTCCTCCTGC-TCCGA-AAA-CA--AACCTTCTGA
gi|7 : tacaatatggtattttcgatcgataacactcatatataTG-AATA-------------CAAAAACATTTTCTT-AAA-C-TTT-GACTATAGATAA-AA------------TT-AGT--TTG--GTG--ATCT-A-CCTG-T-CG--TA------AGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGA---GAATTAC-A----------------------------A-TGTT-----------AAT---------------GTCAGG-TGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTTGA-AAA-CA--CACGTCCTTAAG-CAACAGAAGTTGCTGG-TATGGCCAC---G----AAGTACTCGGCCA-TACTTAAA-ACA-GAATTGTA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAACT-C-ATTGCA------G---CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-TACAACT-ATC-AACCA---CG-TTG--T-AG-ATG--T-------TATT-GT-CCGT--A-CCA--CCTTTTGATTCCG------CCAT-TTTTTA--TCTGT---TTGAAT----C---TC-----GATCTCTGA-ATC-GGAA---TA------AG--AAAATA---AGTGAGCTC-TG-TTCGCCAAT--AA-GAATT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTATTTT-GT-----ACCGTAACCGAAC-CGGTCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG--AACGTTTCnnnnnnnnnnnnnnnnnnnnnnnnncaccgtcattctgtcatccactgttttgcaaagcgatatatatctcttgtcagcagctctttttcgccacca
gi|4 : -AATA-------------CAAAAACATTTTCTT-AAAAT-TCTTGACTATAGATAA-GACAAGTAA---AATT-AAT--TTG--GTG--ATCT-A-CCTG-T-CG--TAT-CACAAGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGG---GAATTAC-AAT-----GTTACACTAAGTCTTAG-ATAA-TATCAATAACATTGAAATTAGT-CTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CT--------CAATTAA-CA--CACCTCCTAACG-CAACAGAAGTTGCTGG-TATTGCCAC---GAAGTACGTACTTGGCCA-TACTTAAC-A---GAAGTGGA-TAAG-AACTGCTC-TTCCCTCGTGATTGCC-ATCATACAATTGG-GGCGAAACT-C-ATTG---------GAACG-GAGTTTTCAAGCTT--------ATT-A----TAC---ATG--TCAC--CC--CA-GACAACT-ATC-AACCA---CG-TT---T--G-AC-----------------T-CTGT--A-CCA--CCTTTCGATTCCG------CCAT-TTTTGA--TCTGT---TTGAATCCCGA---TCATATGG---------ATC-AGAA---TA------GG--AAAAT----ATCGAGCTC-TG-TTCGCCAAT--AA-AAATT--T------AACTT-GTA---TCGAACCGAAAA-TT-A-GGTATATT-GT-----ACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCG
gi|5 : -AATA-------------CAAAAACATTTTCTTTAAA-C-TTT-GACTATAGATAA-A-------------TT-AGTTCG-G--GTG--ATCTTA-CCTG-T-CG---------AAGAGATTAAGGTGTAGAA--GTTCATACTAAAAGATCA-TC-G---AGA------AT-----ATTACA---------------A-TGTT-----------AAT---------------GTCAGGCTGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTTGA-AAA-CA--CACGTCCTTAAG-C-ACAGAAGT--CTGG-TATGGCCAC---G----AAGTACTC-GCCATTACTTAAA-ACAGAAATT-GA-TAAGAAACT-CTCTTTCTCTC------GCC-ACCATACAA-TGG-GGCA-AACT-C-ATT----------CCACG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGGTCCAC--CC--CATTACAACT-ATCAAACCA---CGATTG--T-AGAATGTTT-------TATTGGT-CCGTACA-CCAACCTTTTGTATTCCG------CCAT-TTTTTA--TCTGTGCATTGAAT----C---TC-----GATCTGCTGAATC-GGAA---TA------AG--ACAATA---AGTGAGCTC-TG-TTCGCCAAT-AAGTGAATT--T------AACCT-GTA---GCGAACAAAATA-TTCATAGTATTTT-GT-----ACCGTAACCGAAC-C-GTCA--TTTTAGACCCGCGGAG-AAC--A-TACCGC-GTG-AAACGTTTC
gi|6 : AAAAACATTTTCTT-AAA-C-TCT-GACTATAGATAA-GACGAGTAA---AATT-TGT--TTG--GTG--ATCT-A-CCTG-T-CG--TAT-CAC--GAGATTTGAGTGTA-AA--GTTCATCGTGAAAAGTCA-TCGG---GAATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAGT-CTATAATAGTGTCA---TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CACCTGCTTCCGC-AAA-CA--CGCGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC---G----AAGTACTCTGTCA-TAGTTGAC-A---GAATTGGATTAAG-AACTGCTC-CTCTCTC------GCC-ACCATACAAGTGG-GGCAGAACT-C-ATTG---------GAATG-GAG--------------------TT-GATGCTAC---ATG--TTGC--TC--GA-GACCACT-ATC-AACCA---CG-TTG--T-AG-ATG--A-------TATT-TT-CCAT--A-CCA--CCCTTCGATTCCG------CCAT-TTTGTA--TCTGT---TTGAAT----C---TC-----G---------ATT-GGAA---TA------GG--AAAAT----AGCGAGTTC-TG-TTTGCCAATAAAA-AAAATAAT------AACCT-CTA---TCGAACCAAAGATTT-A-AGTTTTTT-GT-----ACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACTTCGATG-TATCGCT
gi|8 : -AAA-C-TCT-GACCA--GATGA-GACAAGTTA---AATT-AGT--GGG--GTG--ATCT-G-CCTGAT-TA--TCT-CACAAGA--TTTAGATATA-AA--GTTCATCCTAAAAGATCA-TCCG---GAATTAC-AAT-----GTCACA------TTTAA-GAAA-AATC-----------AATAAGT-CTGCA---ATGTCAGA-AGAGAAAA-CGACCCTTGG-CGTATTGATGATAT-CTCCTGCTTCCAA-AAA-CA--CATGTTCTGAAG-CAACAGAAGTTGCTGG-TATGGCTAG---G----AAGTACTTGGCCA-TACTTGAC-A---GAATTGGA-TAAG-AAATGCTC-TTCCCTC------ACC-ACCATACAAGT-G-GGCAGAACT-C-ATTGGA------TG---G-GAATTTTCAACCTTAAAAT---ATT-GATGATAC---ATG--TCAC--CC--CA-GCCCACT-ATC-AATCA---TG-TTG--T-CG-TTG--TTGTTATATATT-GT-CCGT--A-CCA--CCTGTTAA
gi|1 : -AAG-C-CCT-GGAT-----TAA-AACAAATGT---AATT-AGT--TTGCCGTGAAGTCT-A-CCTG-CGCG--TAT-CACA-GAGATTCAG-TGTA-AACAGTTC-TCCTAAAA-ATCA-TCGGGCCACATTACCAATTGTACGTTA-A------CATAG-AA---TATC-----------AATTAGT-TTA-A---GTG-CAGG-TGAGAAAA-CGACC--TTGACTCATTGACGCTGT-CTACTGCTTCCTG-TAAACAAACACATCCTAAAGACCACAGAAGTTG-TGACTATAGGCGCTTAG----AG--ACTCGGC-A-TACTTGGC-A---GAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCAT-CAAGTGG-GG-AGAACTTC-TTTG---------GAACGCGAGTTTTCAAGCTT---AC---ATTAGATGA-AC---ATG--TC----CC--CA-GACAACTTATC-AACCA---CG-CTGGTT-AG-ATG--T-------T--T-GT-CCGA--A-CCA--CTTTC--ATTCC--------C-T-TTTG-G--TTTCT---TTGA-T----C---CT-----G---------ATT-G-AA---TA------GG--AAAAT----AGCGAGCTCATGTTTTGCC-AT--AA-AAAAT--TCCGA--AACCTGGTATCCTCGAACCG-CAA-TT-A-AGTATTTTGT-------CCGTAACCAAAC-CGGCCAT-TTTTAAA-TCGCTGTG-AA-CGA-Taaaaaaaaccccaaaaaacctgtatcaaactgaaaattgagtattttgtaacgtaactgaaccggccattatagaccgcagagaaccgatatcgtggtatactgtttccc
gi|20 : aatgtggactggaccatttttgtagtcccattcgaccttgcctcaatccacctttatgtcccggacctttgacactactcataccaaaattttatatagGGTGTC-AA--ATTCATCCTAAAAGATCA-TCGG---GAATTAC----------TTACA------CTTAG-AAAAATATC-----------AATTAGT-CTACA---GTGTCCGG-TGAGAAAA-CTGCCCTTTG-CTCATT---GATGT-CTCCTGCTTCCG---AA-CA--C
gi|9 : --GTTCATCTTAAAA-ATCAATCGG---GAATTCC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AGTAAGT-CTACA---TTGTCAGG-TGAGAAAAACGGCCCTCTG-CGCATTGGCGATGT-CT---GCTTCTGA--AA--A--CACGTCCTTGAG-CAACAGAAGTTGCTGG-TATGGCCAG---G----AAGTACTCGGCCA-TACTTGAC-A---GAATTGGA-TAAG-AATTGCTC-CTCTCTT------GCC-ACCATACA--------------T-C-ATTG---------GAACG-GAGTTTTCAACCTT---AC---ACT-GATGCTAC---ATG--TCAC--CC--CA-GACAACT-ATC-AACCACTTTG-TTG----AT-ATA--T-------TGTT-GT-CCGT--A-CCA--C-CTTCGATTCCG------CCAT-TTTGTAGGTCTGT---TTGAAT----C---TC-----G---------ATC-GGAA---TA------GG--AAAATTATAAGCGAGCTC-TG-TTCACCATT-AAA-AAAA---T------AACCT-GTA---TTGAACTGAAAA-TT-A-Agtgcggcatccgtccgttaagaatag
gi|18 : TGCTTCCGA-AAA-CA--CACGTCATAAAG-CAACAGA-GTTGCTGG-TATGGCCAC---G----AAGTACTCAGCCA-TA-------------ATTGGA-TAAG-AAATGCTC-TTCTCTC------GCC-ACCATACAA--GG-GGCAGAACT-C-ATTGGATTGATTGGAACG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGT-TCAT--CC--CA-GACAACT-ATC-AACCA---CG-TTG--TAAG-AT
gi|11 : CTTGAACA---GAATTAGA-TAAG-GACTG-TC-TTGCTTC------ACCGACCACACAAGTGGCAGAAAAACT-C-TCTGGA------A--ACG-GAGTTTTCAACCTT---GCGAAATT--ATGCTACGTCATG---CACA-TC--CA-GACAACT-AT--AACCA---TG-TTG-------ATG--T-------TATT-GT-CCGT--AACCA--CCTTTCGATT--GAATAGACCACGTTTGTA--TCTGTGG-TTGAAT----C---TT-----G---------ATCAGGAAAATTA----------AAAAC----A-CGAGCTC--G-TTCACAAAT-AAA-AA-----T------AACCTTGTAA--TCGAACGGAAAA-TT-A-TGTATTTT-GA-----ACTGTAACCGAACACGGCCAATTTTCAGA-CCGTGGAG-AA
gi|12 : ACAA-TGG-GACAGAACT-CGATTG---------GAGCG-GAGTTATCGA-CTT---AC---ACT-GCT-CTAT---ATG--CAAC--CC-----GA----T-AT--AATCA---TG-TTA--T-------------------CT-GTGCCGT--A-CCA--TCTTTCGATTCCG-------CAT-TTCG----TTTG----TTGAAT--------CC-----G---------ATC-GGAA---TA------GG---AAAT----AG-GCGCTC-TG-TTCACAAAT-GAT-GAAA---T------AACTT-GTA---TCGA--CAAAAA-TG-A-TATATTTTGTCTTTGTACTGTAACC-AAG-CGG--A--TTTTAG--CCG-AGAG-AACCGAGTACCG-GTTGTTACTGTTTC
gi|21 : TGCTAC---CTA--TCGCTGCCTTCA-GTCCACT-ACC-AACCA---CG-TTG--T-----TG--T-------TACT-AT-CGGT--G-CCA--ACTTCCGTTTCGG------CCAT-TTTGAA--TTTAA---TTGAAT----C---TC-----G---------ATC-GGAA---TA------GG---TAAT----AGCGAGCTT-TG-TTTACAAAT-AAA-Aa
gi|14 : ttac-------TATT-GT-CCGT--A-CCA--CCTTTGAAT-CCG------CCAT-TT-GCA--TACGC---TTGAATCGC-GATCTC-----G---------ATC-AGAA---TA------GGGGAAAAT----AGCGAGCAA-TG-TTCACCAAT--AA-AAAAT--T------AAACT-GTA---TCGAACCGAAAA-TT-A-AGTATTTTGTT-----ACCGTATCCGAAC-CGGACA--TTTTAGA-CCACGGAGAAACCAA-TACCGCAGTG-AAGCGTTTCc
gi|23 : tg---TC-----G---------ATC-GGAA---TACTTATAGG--AAAAT----GGTGAGCTC-TG-TTCGCCAAT-AAG-AAT-T--T------AACCT-GCA---TCGAACTGAAAA-TT-A-AGCATTTT-GT-----ACCATAACCAAAC-CGGCCA--TTTTAGA-CCGCAGAaccc
gi|8 : aTGTTAAA-AAA-AAAAC--CCCAAAAAACCT-GTA---TCAAACTGAAAA-TT-G-AGTATTTT-GT-----AACGTAACTGAAC-CGGCCA--TTATAGA-CCGCAGAG-AACCGA-TATCGTGGTA-TACTGTTTC
gi|26 : aaactctgaccagatgagacaagttaaattagtggggtgatctgcctgattatctcacaagatttagatataaagttcatcctaaaagatcatccggaattacaatgtcacatttaagaaaaatcaataagtctgcaatgtcagaagagaaaacgacccttggcgtattgatgatatctcctgcttccaaaaacacatgttctgaagcaacagaagttgctggtatggctaggaagtacttggccatacttgacagaattggataagaaatgctcttccctcaccaccatacaagtgggcagaactcattggatgggaattttcaaccttaaaatattgatgatacatgtcaccccagcccactatcaatcatgttgtcgttgttgttatatattgtccgtaccacc-GCA---TCGAACTAAAAA-TT-A-AGCATTTT-GT-----ACCATAACcc
gi|24 : TTTT-GT-----ACTGTAACTGAAG-CAGACA--TTTTGTA-CTGTGGAG-AACCGA-TACCACGGTA-TACCGcagagc
gi|25 : -----ACCGTAACCGAAC-CTGCCA--TTTTAGA-CTGCAGAG-AACTGA-TACCGCGGTcctt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAGTGAATTAAAAATGTGACAGTTTAATACATAACTTTTATTTTATTCATTCAAAACAAATAAGATATACTGTATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGACTATCATAAAAAAAATGTTGAACCCCTG
Unaligned ( gi|15 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTATTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCT
Unaligned ( gi|16 ): TAAGTGAATTAAAAATTTGACAGTTTAATACATAAGTTTTATTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCTG
Unaligned ( gi|17 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTAGTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCC
Unaligned ( gi|22 ): CTTCTCCATACGTTACCTATATTCAAGGGTAGATATTCAGGTATTAATTTGGTACAGGATACTTTGTAGCAATTCATATTGACATTTCAATTTTTTTAAGGCAATAATCAAATTTAAGCTATATATCAA
Alignments
lowQualScore : 111 1111 11 1 2 11 1 2222222222222 111111111 111111 11111111111 111111 111111111 11111111 1111111 111 2222222222222222222 1111 11 11111111111
lowQualScore : 000 0 4444 33 1 0 3 0 3 33 0 5 4444444444444 4 4 99 4 4 777 8 99999 4 777 55 55 55 4 8 4 55 4 4 4 4 55 2 3 55 3 222222222 000000 3 3 77777777777 7 3 2 6666 3 3 3 3 3 44 44 1 4 4 55 8888 2 4 55 88 3 3 3 000000 3 2 3 3 3 999999999 3 3 2 555 555 3 555 77 77 44 3 3 3 3 33333333 44 0000000 3 3 3 3 3 44 3 999999 3 4 44 000 888888 5555555555555555555 3 555 888888 44 2222 2 2 00 2 99999999999 6 888 3 3 3 888888 2 3 0 77 3 3 3 88 1
lowQualScore : ... . .... .. . . . . . .. . . ............. . . .. . . ... . ..... . ... .. .. .. . . . .. . . . . .. . . .. . ......... ...... . . ........... . . . .... . . . . . .. .. . . . .. .... . . .. .. . . . ...... . . . . . ......... . . . ... ... . ... .. .. .. . . . . ........ .. ....... . . . . . .. . ...... . . .. ... ...... ................... . ... ...... .. .... . . .. . ........... . ... . . . ...... . . . .. . . . .. .
lowQualScore : 000 2 2222 88 0 0 2 0 2 22 0 7 4444444444444 4 0 55 0 0 000 2 22222 0 000 55 55 55 0 0 0 55 0 0 9 0 00 8 6 00 6 222222222 555555 6 6 33333333333 0 6 0 9999 6 6 6 6 3 66 66 0 0 0 55 5555 3 0 00 66 6 6 6 555555 6 5 3 3 3 222222222 3 3 5 888 888 3 444 33 33 22 1 1 1 1 00000000 66 0000000 1 1 1 1 1 22 3 666666 3 6 66 444 888888 8888888888888888888 1 444 888888 22 7777 9 9 66 9 55555555555 2 555 1 1 1 888888 9 1 2 33 1 3 6 66 0
consensus : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
Reference ( family-1376 ) : AAATAAAGCAATTCTT-CC-AAA--AAAAGTNTTT-AATG-CAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTNAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TANCGTTTC
gi|1 : ATAC-------------CAAAA--TTTTATAT-AGAAGCC-CT-GG--AT---T---AAAACAAATGT---AATT-AG---T--TTGCCGTGAAGTCT-ACCTG-CGCG--TAT-CAC-A-GAGATTCAG-TGTA-AACAGTTC-TCCTAAAA-ATCA-TCGGGCCACATTACCAATTGTACGTTA-A------CATAG-AA---TATC-----------AATTAG-TTTA-A---GTG-CAGG-TGAGAAAA-CGACC--TTGACTCATTGACGCTGT-CTACTGCTTCCTGTA--AACAAACACATCCTAAAGACCACAGAAGTTG-TGACTATAGGCGCTTAGA----G-ACTCGGC-A-TACTT--GG--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCAT-CAAGTGG-GG-AGAACTTC-TTTG---------GAA-CGCGAGTTTTCAAGCTT---AC---ATTAGATGA-AC---ATG--T--C--CC--CA-GACAACTTATC-AACCACG-CTGGTT--AG-ATG--T---------T-T-GT-CCGAA-C-C--A-CTTTC--ATTCC-------C--T-TTTG-G--TTTCT---TTG-ATC------CT---------G---------ATT--GAA---TA------GG--AAAAT----AGCGAGCTCATGTTTTGCC-AT--AA-AAAAT--TCCGA--AACCTGGTATCCTCGAACCG-CAA-TT-A-AGTAT------TTTG-T-CCGTAACCAAAC-CGGCCAT-TTTTAAA-TCGCTGTG-AA-CGA-T
gi|10 : aatgtggactggaccatttttgtagtcccattcgaccttgcctcaatccacctttatgtcccggacctttgacactactcAAATAAA-------TT-TA-AAA--TAAAGCATTC-A----CA-GAAAGTA--TACA-AT------C-------------AAAA-CATTTTAT-T-TAA--CT-CT-GACTAAAGATTCTAA--CAAGTTA---AATT-AG---T--GTG--GTGA--TCT-ACC---T-TGATTAT-CAC-AAAAGATTGGGGTGTA-CA--GTTCATCCAAAAAGATCA-TCTGG--A-ATTAC-AA------GTTACA------CTTAACAAAG-TA-C-----------AATAAGTTCTACA---TTGTCAGG-TGAGAAAA-T-GCCCTTTG-CGCATTGACGATGTCCTCCTGC-TCC-GAA--AACA--AACCTTCTGA
gi|11 : tacaatatggtattttcgatcgataacactcatatataaCTT--GAA-CAGAATTAGA-TAAG-GACTG-TC-TTGCTTC------ACCGACCACACAAGTGGCAGAAAAAC-TC-TCTG---------GAAACG-GAGTTTTCAACCTT---GCGAAATT--ATGCTACGTCATG---CACA-TC--CA-GACAAC-TAT--AACCATG-TTG--------ATG--T-------TAT-T-GT-CCGTAAC-C--ACCTTTCG-ATT--GAATAGACCACGTTTGTA--TCTGTGG-TTGAATC------TT---------G---------ATCAGGAAAATTA----------AAAAC----A-CGAGCTC--G-TTCACAAAT-AAA-AA-----T------AACCTTGTAA--TCGAACGGAAAA-TT-A-TGTAT------TTTG-AACTGTAACCGAACACGGCCAATTTTCAGA-CCGTGGAG-AAnnnnnnnnnnnnnnnnnnnnnnnnncaccgtcattctgtcatccactgttttgcaaagcgatatatatctcttgtcagcagctctttttcgccacca
gi|12 : ACAA-TGG-GACAGAAC-TCGATTG---------GAG-CG-GAGTTATCGA-CTT---AC---ACT-GCT-CTAT---ATG--CAAC--CC-----GA-----TAT--AATC---------------ATG--T-------TATCT-GTGCCGTA-C-C--ATCTTTCG-ATTCCG-------CAT-TTCG----TTTG----TTGAATC-------C---------G---------ATC-GGAA---TA------GG---AAAT----AG-GCGCTC-TG-TTCACAAAT-GAT-GAAA---T------AACTT-GTA---TCGA--CAAAAA-TG-A-TATATTTTGTCTTTG-TACTGTAACC-AAG-CGG--A--TTTTAG--CCG-AGAG-AACCGAGTACCG-GTTGTTACTGTTTC
gi|14 : -------TAT-T-GT-CCGTA-C-C--ACCTTT-G-AATCCG------CCAT-TT-GCA--TACGC---TTGAATCGCGATCTC---------G---------ATC-AGAA---TA------GGGGAAAAT----AGCGAGCAA-TG-TTCACCAAT--AA-AAAAT--T------AAACT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTGTTACCGTATCCGAAC-CGGACA--TTTTAGA-CCACGGAGAAACCAA-TACCGCAGTG-AAGCGTTTCa
gi|18 : tgTGCTTCC-GAA--AACA--CACGTCATAAAG-CAACAGA-GTTGCTGG-TATGGCCAC--GAA----GTACTCAGCCA-TA-------------ATTGGA-TAAG-AAATGCTC-TTCTCTC------GCC-ACCATACAAG--G-GGCAGAAC-TC-ATTGGATTGATTGGAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGT-TCAT--CC--CA-GACAAC-TATC-AACCACG-TTG--TA-AG-ATaccc
gi|19 : AAATAA-GCAATTTTC-TC-CAA--ACAAGTCTTTCAATG-CAAGAAAGTAAATACACATGGAATACCTTACTACATACAAAAAAC-TTTTCT-T-AAA--CTTCT-GACTATAGAT----TGACAAGTTAATTAATTCAGCGTT--GTG--GTTA--TCT-TACTGAT-----TATCCACAAAAAGATT-AGG
gi|2 : gatatccccatatataataaaaaaactttaAAATAAAATAATTCTT-CCCAAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAA-------------AAAAACATTTTCT-T-AAA--CT-CT-GAATATAGAT---AAAACAAGTGA---AATT-AG---T--GTG--GTGG--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAGAAGATCA-TCCGA--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTTATTGACGATGT-CTCCTGCTTCC-GAT--AACA--CACATCCTAAAG-CAACAGAAGTTGCTGG-TATTGCCAC--GAT----CTACTCAGCCA-TACTT--GA--AAAAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTGAAA------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AATCATG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACTTTTCA-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATG------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTTGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCAAACCGAAAA-TT-A-AGTAT------TTTT-CACCGTAACTGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|20 : GGTGTC-AA--ATTCATCCTAAAAGATCA-TCGGG--A-ATTAC----------TTACA------CTTAG-AAAAATATC-----------AATTAG-TCTACA---GTGTCCGG-TGAGAAAA-CTGCCCTTTG-CTCATT---GATGT-CTCCTGCTTCC-GA------A--CACGT
gi|21 : TGCTAC---CTA--TCGCTGCCTTCA-GTCCAC-TACC-AACCACG-TTG--T------TG--T-------TAC-T-AT-CGGTG-C-C--AACTTCCG-TTTCGG------CCAT-TTTGAA--TTTAA---TTGAATC------TC---------G---------ATC-GGAA---TA------GG---TAAT----AGCGAGCTT-TG-TTTACAAAT-AAA-Agcggcatccgtccgttaagaatag
gi|23 : ttac------TC---------G---------ATC-GGAA---TACTTATAGG--AAAAT----GGTGAGCTC-TG-TTCGCCAAT-AAG-AAT-T--T------AACCT-GCA---TCGAACTGAAAA-TT-A-AGCAT------TTTG-TACCATAACCAAAC-CGGCCA--TTTTAGA-CCGCAGAc
gi|24 : aT------TTTG-TACTGTAACTGAAG-CAGACA--TTTTGTA-CTGTGGAG-AACCGA-TACCACGGTA-TACCG
gi|25 : G-TACCGTAACCGAAC-CTGCCA--TTTTAGA-CTGCAGAG-AACTGA-TACCGCGGTcctt
gi|26 : -GCA---TCGAACTAAAAA-TT-A-AGCAT------TTTG-TACCATAACC
gi|3 : AAATAAAGCAATTCTTGCC-AAACAAAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ACG-AATGC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTAA---AATT-GG---T--GTG--GATA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAAAATATCA-TCAGG--A-ATTAC-AAT-----GTTACA------CTTAA-AAAA-TATC-----------AATTAG-TCTATC---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTCATTGACGATGT-CTCCTGCTTCC-GGT--AACA--CTCGTCCTAAAG-CAACGGAAGTTGCTGG-TATGGCCAC--GAA----GTCCTCAGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--TC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTATG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCAAGCAC-TG-TTCGCCAAT-CAA-AAAagagc
gi|4 : tacaattagtactagttttcgatacgatacactcatatatgaaataaacttta-AATAC-------------AAAAACATTTTCT-T-AAAA-TT-CTTGACTATAGAT---AAGACAAGTAA---AATT-AA---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACACTAAGTCTTAG-ATAA-TATCAATAACATTGAAATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CTC----------AATTAACA--CACCTCCTAACG-CAACAGAAGTTGCTGG-TATTGCCAC--GAAGTACGTACTTGGCCA-TACTT--AA--CAGAAGTGGA-TAAG-AACTGCTC-TTCCCTCGTGATTGCC-ATCATACAATTGG-GGCGAAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT--------ATT-A----TAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TT---T---G-AC------------------T-CTGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTTGA--TCTGT---TTGAATC------CCGATCATATGG---------ATC-AGAA---TA------GG--AAAAT----ATCGAGCTC-TG-TTCGCCAAT--AA-AAATT--T------AACTT-GTA---TCGAACCGAAAA-TT-A-GGTAT------ATTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGt
gi|5 : -AATAC-------------AAAAACATTTTCT-TTAAA--CT-TT-GACTATAGAT---AA-------------ATT-AG---TTCG-G--GTGA--TCTTACCTG-T-CG----------AAGAGATTAAGGTGTAGAA--GTTCATACTAAAAGATCA-TCGAG--A-AT------------ATTACA---------------A-TGTT-----------AAT---------------GTCAGGCTGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-C-ACAGAAGT--CTGG-TATGGCCAC--GAA----GTACTC-GCCATTACTTAAAA--CAGAAATTGA-TAAGAAACT-CTCTTTCTCTC------GCC-ACCATACAA-TGG-GGCA-AAC-TC-ATT----------CCA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGGTCCAC--CC--CATTACAAC-TATCAAACCACGATTG--T--AGAATGTTT-------TAT-TGGT-CCGTA-CACCAACCTTTTGTATTCCG------CCAT-TTTTTA--TCTGTGCATTGAATC------TC---------GATCTGCTGAATC-GGAA---TA------AG--ACAATA---AGTGAGCTC-TG-TTCGCCAAT-AAGTGAATT--T------AACCT-GTA---GCGAACAAAATA-TTCATAGTAT------TTTG-TACCGTAACCGAAC-C-GTCA--TTTTAGACCCGCGGAG-AAC--A-TACCGC-GTG-AAACGTTTC
gi|6 : -------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACGAGTAA---AATT-TG---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC---GAGATTTGAGTGTA-AA--GTTCATCGTGAAAAGTCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTATAATAGTGTCA---TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CACCTGCTTCC-GCA--AACA--CGCGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCTGTCA-TAGTT--GA--CAGAATTGGATTAAG-AACTGCTC-CTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-TG-GAG--------------------TT-GATGCTAC---ATG--TTGC--TC--GA-GACCAC-TATC-AACCACG-TTG--T--AG-ATG--A-------TAT-T-TT-CCATA-C-C--ACCCTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATT-GGAA---TA------GG--AAAAT----AGCGAGTTC-TG-TTTGCCAATAAAA-AAAATAAT------AACCT-CTA---TCGAACCAAAGATTT-A-AGTTT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACTTCGATG-TATCGCT
gi|7 : TG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-TT-GACTATAGAT---AA------------AATT-AG---T--TTG--GTGA--TCT-ACCTG-T-CG--TA-------AGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGAG--A-ATTAC-A----------------------------A-TGTT-----------AAT---------------GTCAGG-TGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--AAAACAGAATTGTA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------CAG-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-TACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTCCG------CCAT-TTTTTA--TCTGT---TTGAATC------TC---------GATCTCTGA-ATC-GGAA---TA------AG--AAAATA---AGTGAGCTC-TG-TTCGCCAAT--AA-GAATT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGTCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG--AACGTTTC
gi|8 : -AAA--CT-CT-GACCA--GAT---GAGACAAGTTA---AATT-AG---T--GGG--GTGA--TCT-GCCTGAT-TA--TCT-CAC-AAGA--TTTAGATATA-AA--GTTCATCCTAAAAGATCA-TCCGG--A-ATTAC-AAT-----GTCACA------TTTAA-GAAA-AATC-----------AATAAG-TCTGCA---ATGTCAGA-AGAGAAAA-CGACCCTTGG-CGTATTGATGATAT-CTCCTGCTTCC-AAA--AACA--CATGTTCTGAAG-CAACAGAAGTTGCTGG-TATGGCTAG--GAA----GTACTTGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AAATGCTC-TTCCCTC------ACC-ACCATACAAGT-G-GGCAGAAC-TC-ATTG---------GAT-GG-GAATTTTCAACCTTAAAAT---ATT-GATGATAC---ATG--TCAC--CC--CA-GCCCAC-TATC-AATCATG-TTG--T--CG-TTG--TTGTTATATAT-T-GT-CCGTA-C-C--ACCT
gi|8 : C-TG-TT----AAA-AAA-AAAAC--CCCAAAAAACCT-GTA---TCAAACTGAAAA-TT-G-AGTAT------TTTG-TAACGTAACTGAAC-CGGCCA--TTATAGA-CCGCAGAG-AACCGA-TATCGTGGTA-TACTGTTTCgttaaaaaaaaaaccccaaaaaacctgtatcaaactgaaaattgagtattttgtaacgtaactgaaccggccattatagaccgcagagaaccgatatcgtggtatactgtttccc
gi|9 : aaactctgaccagatgagacaagttaaattagtggggtgatctgcctgattatctcacaagatttagatataaagttcatcctaaaagatcatccggaattacaatgtcacatttaagaaaaatcaataagtctgcaatgtcagaagagaaaacgacccttggcgtattgatgatatctcctgcttccaaaaacacatgttctgaagcaacagaagttgctggtatggctaggaagtacttggccatacttgacagaattggataagaaatgctcttccctcaccaccatacaagtgggcagaactcattggatgggaattttcaaccttaaaatattgatgatacatgtcaccccagcccactatcaatcatgttgtcgttgttgttatatattgtccgtaccac--GTTCATCTTAAAA-ATCAATCGGG--A-ATTCC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AGTAAG-TCTACA---TTGTCAGG-TGAGAAAAACGGCCCTCTG-CGCATTGGCGATGT-CT---GCTTCT-GAA--AACA--C--GTCCTTGAG-CAACAGAAGTTGCTGG-TATGGCCAG--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AATTGCTC-CTCTCTT------GCC-ACCATACA---------------TC-ATTG---------GAA-CG-GAGTTTTCAACCTT---AC---ACT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACT-TTG--TTGAT-ATA--T-------TGT-T-GT-CCGTA-C-C--ACC-TTCG-ATTCCG------CCAT-TTTGTAGGTCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAATTATAAGCGAGCTC-TG-TTCACCATT-AAA-AAAA---T------AACCT-GTA---TTGAACTGAAAA-TT-A-Acc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGTGAATTAAAAATGTGACAGTTTAATACATAACTTTTATTTTATTCATTCAAAACAAATAAGATATACTGTATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGACTATCATAAAAAAAATGTTGAACCCCTG
Unaligned ( gi|15 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTATTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCT
Unaligned ( gi|16 ): TAAGTGAATTAAAAATTTGACAGTTTAATACATAAGTTTTATTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCTG
Unaligned ( gi|17 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTAGTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCC
Unaligned ( gi|22 ): CTTCTCCATACGTTACCTATATTCAAGGGTAGATATTCAGGTATTAATTTGGTACAGGATACTTTGTAGCAATTCATATTGACATTTCAATTTTTTTAAGGCAATAATCAAATTTAAGCTATATATCAA
Alignments
lowQualScore : 1 1 11 1 11 1 2222222222222 111111111 111111 11111111111 111111 111111111 11111111 1111111 111 2222222222222222222 1111 11 11111111111
lowQualScore : 7 3 3 88 3 7 33 0 5 4444444444444 4 4 99 4 4 777 8 99999 4 777 55 55 55 4 8 4 55 4 4 4 4 55 2 3 55 3 222222222 000000 3 3 77777777777 7 3 2 6666 3 3 3 3 3 44 44 0 4 4 55 8888 2 4 55 88 3 3 3 000000 3 2 3 3 3 999999999 3 3 2 555 555 3 555 77 77 44 3 3 3 3 33333333 44 0000000 3 3 3 3 3 44 3 999999 3 4 44 000 888888 5555555555555555555 3 555 888888 44 2222 2 2 00 2 99999999999 6 888 3 3 3 888888 2 3 0 77 3 3 3 88 1
lowQualScore : . . . .. . . .. . . ............. . . .. . . ... . ..... . ... .. .. .. . . . .. . . . . .. . . .. . ......... ...... . . ........... . . . .... . . . . . .. .. . . . .. .... . . .. .. . . . ...... . . . . . ......... . . . ... ... . ... .. .. .. . . . . ........ .. ....... . . . . . .. . ...... . . .. ... ...... ................... . ... ...... .. .... . . .. . ........... . ... . . . ...... . . . .. . . . .. .
lowQualScore : 3 3 3 33 3 3 22 0 7 4444444444444 4 0 55 0 0 000 2 22222 0 000 55 55 55 0 0 0 55 0 0 9 0 00 8 6 00 6 222222222 555555 6 6 33333333333 0 6 0 9999 6 6 6 6 3 66 66 8 0 0 55 5555 3 0 00 66 6 6 6 555555 6 5 3 3 3 222222222 3 3 5 888 888 3 444 33 33 22 1 1 1 1 00000000 66 0000000 1 1 1 1 1 22 3 666666 3 6 66 444 888888 8888888888888888888 1 444 888888 22 7777 9 9 66 9 55555555555 2 555 1 1 1 888888 9 1 2 33 1 3 6 66 4
consensus : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
Reference ( family-1376 ) : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|1 : ATAC-------------CAAAA--TTTTATAT-AGAAGCC-CT-GG--AT---T---AAAACAAATGT---AATT-AG---T--TTGCCGTGAAGTCT-ACCTG-CGCG--TAT-CAC-A-GAGATTCAG-TGTA-AACAGTTC-TCCTAAAA-ATCA-TCGGGCCACATTACCAATTGTACGTTA-A------CATAG-AA---TATC-----------AATTAG-TTTA-A---GTG-CAGG-TGAGAAAA-CGACC--TTGACTCATTGACGCTGT-CTACTGCTTCCTGTA--AACAAACACATCCTAAAGACCACAGAAGTTG-TGACTATAGGCGCTTAGA----G-ACTCGGC-A-TACTT--GG--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCAT-CAAGTGG-GG-AGAACTTC-TTTG---------GAA-CGCGAGTTTTCAAGCTT---AC---ATTAGATGA-AC---ATG--T--C--CC--CA-GACAACTTATC-AACCACG-CTGGTT--AG-ATG--T---------T-T-GT-CCGAA-C-C--A-CTTTC--ATTCC-------C--T-TTTG-G--TTTCT---TTG-ATC------CT---------G---------ATT--GAA---TA------GG--AAAAT----AGCGAGCTCATGTTTTGCC-AT--AA-AAAAT--TCCGA--AACCTGGTATCCTCGAACCG-CAA-TT-A-AGTAT------TTTG-T-CCGTAACCAAAC-CGGCCAT-TTTTAAA-TCGCTGTG-AA-CGA-T
gi|10 : aatgtggactggaccatttttgtagtcccattcgaccttgcctcaatccacctttatgtcccggacctttgacactactcAGAAAGTA--TACA-AT------C-------------AAAA-CATTTTAT-T-TAA--CT-CT-GACTAAAGATTCTAA--CAAGTTA---AATT-AG---T--GTG--GTGA--TCT-ACC---T-TGATTAT-CAC-AAAAGATTGGGGTGTA-CA--GTTCATCCAAAAAGATCA-TCTGG--A-ATTAC-AA------GTTACA------CTTAACAAAG-TA-C-----------AATAAGTTCTACA---TTGTCAGG-TGAGAAAA-T-GCCCTTTG-CGCATTGACGATGTCCTCCTGC-TCC-GAA--AACA--AACCTTCTGA
gi|11 : tacaatatggtattttcgatcgataacactcatatataaaaataaatttaaaataaagcattcacCTT--GAA-CAGAATTAGA-TAAG-GACTG-TC-TTGCTTC------ACCGACCACACAAGTGGCAGAAAAAC-TC-TCTG---------GAAACG-GAGTTTTCAACCTT---GCGAAATT--ATGCTACGTCATG---CACA-TC--CA-GACAAC-TAT--AACCATG-TTG--------ATG--T-------TAT-T-GT-CCGTAAC-C--ACCTTTCG-ATT--GAATAGACCACGTTTGTA--TCTGTGG-TTGAATC------TT---------G---------ATCAGGAAAATTA----------AAAAC----A-CGAGCTC--G-TTCACAAAT-AAA-AA-----T------AACCTTGTAA--TCGAACGGAAAA-TT-A-TGTAT------TTTG-AACTGTAACCGAACACGGCCAATTTTCAGA-CCGTGGAG-AAnnnnnnnnnnnnnnnnnnnnnnnnncaccgtcattctgtcatccactgttttgcaaagcgatatatatctcttgtcagcagctctttttcgccacca
gi|12 : ACAA-TGG-GACAGAAC-TCGATTG---------GAG-CG-GAGTTATCGA-CTT---AC---ACT-GCT-CTAT---ATG--CAAC--CC-----GA-----TAT--AATC---------------ATG--T-------TATCT-GTGCCGTA-C-C--ATCTTTCG-ATTCCG-------CAT-TTCG----TTTG----TTGAATC-------C---------G---------ATC-GGAA---TA------GG---AAAT----AG-GCGCTC-TG-TTCACAAAT-GAT-GAAA---T------AACTT-GTA---TCGA--CAAAAA-TG-A-TATATTTTGTCTTTG-TACTGTAACC-AAG-CGG--A--TTTTAG--CCG-AGAG-AACCGAGTACCG-GTTGTTACTGTTTC
gi|14 : -------TAT-T-GT-CCGTA-C-C--ACCTTT-G-AATCCG------CCAT-TT-GCA--TACGC---TTGAATCGCGATCTC---------G---------ATC-AGAA---TA------GGGGAAAAT----AGCGAGCAA-TG-TTCACCAAT--AA-AAAAT--T------AAACT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTGTTACCGTATCCGAAC-CGGACA--TTTTAGA-CCACGGAGAAACCAA-TACCGCAGTG-AAGCGTTTCa
gi|18 : tgTGCTTCC-GAA--AACA--CACGTCATAAAG-CAACAGA-GTTGCTGG-TATGGCCAC--GAA----GTACTCAGCCA-TA-------------ATTGGA-TAAG-AAATGCTC-TTCTCTC------GCC-ACCATACAAG--G-GGCAGAAC-TC-ATTGGATTGATTGGAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGT-TCAT--CC--CA-GACAAC-TATC-AACCACG-TTG--TA-AG-ATaccc
gi|19 : AAATAA-GCAATTTTC-TC-CAA--ACAAGTCTTTCAATG-CAAGAAAGTAAATACACATGGAATACCTTACTACATACAAAAAAC-TTTTCT-T-AAA--CTTCT-GACTATAGAT----TGACAAGTTAATTAATTCAGCGTT--GTG--GTTA--TCT-TACTGAT-----TATCCACAAAAAGATT-AGG
gi|2 : gatatccccatatataataaaaaaactttaAAATAAAATAATTCTT-CCCAAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAA-------------AAAAACATTTTCT-T-AAA--CT-CT-GAATATAGAT---AAAACAAGTGA---AATT-AG---T--GTG--GTGG--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAGAAGATCA-TCCGA--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTTATTGACGATGT-CTCCTGCTTCC-GAT--AACA--CACATCCTAAAG-CAACAGAAGTTGCTGG-TATTGCCAC--GAT----CTACTCAGCCA-TACTT--GA--AAAAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTGAAA------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AATCATG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACTTTTCA-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATG------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTTGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCAAACCGAAAA-TT-A-AGTAT------TTTT-CACCGTAACTGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|20 : GGTGTC-AA--ATTCATCCTAAAAGATCA-TCGGG--A-ATTAC----------TTACA------CTTAG-AAAAATATC-----------AATTAG-TCTACA---GTGTCCGG-TGAGAAAA-CTGCCCTTTG-CTCATT---GATGT-CTCCTGCTTCC-GA------A--CACGT
gi|21 : TGCTAC---CTA--TCGCTGCCTTCA-GTCCAC-TACC-AACCACG-TTG--T------TG--T-------TAC-T-AT-CGGTG-C-C--AACTTCCG-TTTCGG------CCAT-TTTGAA--TTTAA---TTGAATC------TC---------G---------ATC-GGAA---TA------GG---TAAT----AGCGAGCTT-TG-TTTACAAAT-AAA-Agcggcatccgtccgttaagaatag
gi|23 : ttac------TC---------G---------ATC-GGAA---TACTTATAGG--AAAAT----GGTGAGCTC-TG-TTCGCCAAT-AAG-AAT-T--T------AACCT-GCA---TCGAACTGAAAA-TT-A-AGCAT------TTTG-TACCATAACCAAAC-CGGCCA--TTTTAGA-CCGCAGAc
gi|24 : aT------TTTG-TACTGTAACTGAAG-CAGACA--TTTTGTA-CTGTGGAG-AACCGA-TACCACGGTA-TACCG
gi|25 : G-TACCGTAACCGAAC-CTGCCA--TTTTAGA-CTGCAGAG-AACTGA-TACCGCGGTcctt
gi|26 : -GCA---TCGAACTAAAAA-TT-A-AGCAT------TTTG-TACCATAACC
gi|3 : AAATAAAGCAATTCTTGCC-AAACAAAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ACG-AATGC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTAA---AATT-GG---T--GTG--GATA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAAAATATCA-TCAGG--A-ATTAC-AAT-----GTTACA------CTTAA-AAAA-TATC-----------AATTAG-TCTATC---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTCATTGACGATGT-CTCCTGCTTCC-GGT--AACA--CTCGTCCTAAAG-CAACGGAAGTTGCTGG-TATGGCCAC--GAA----GTCCTCAGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--TC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTATG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCAAGCAC-TG-TTCGCCAAT-CAA-AAAagagc
gi|4 : tacaattagtactagttttcgatacgatacactcatatatgaaataaacttta-AATAC-------------AAAAACATTTTCT-T-AAAA-TT-CTTGACTATAGAT---AAGACAAGTAA---AATT-AA---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACACTAAGTCTTAG-ATAA-TATCAATAACATTGAAATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CTC----------AATTAACA--CACCTCCTAACG-CAACAGAAGTTGCTGG-TATTGCCAC--GAAGTACGTACTTGGCCA-TACTT--AA--CAGAAGTGGA-TAAG-AACTGCTC-TTCCCTCGTGATTGCC-ATCATACAATTGG-GGCGAAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT--------ATT-A----TAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TT---T---G-AC------------------T-CTGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTTGA--TCTGT---TTGAATC------CCGATCATATGG---------ATC-AGAA---TA------GG--AAAAT----ATCGAGCTC-TG-TTCGCCAAT--AA-AAATT--T------AACTT-GTA---TCGAACCGAAAA-TT-A-GGTAT------ATTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGt
gi|5 : -AATAC-------------AAAAACATTTTCT-TTAAA--CT-TT-GACTATAGAT---AA-------------ATT-AG---TTCG-G--GTGA--TCTTACCTG-T-CG----------AAGAGATTAAGGTGTAGAA--GTTCATACTAAAAGATCA-TCGAG--A-AT------------ATTACA---------------A-TGTT-----------AAT---------------GTCAGGCTGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-C-ACAGAAGT--CTGG-TATGGCCAC--GAA----GTACTC-GCCATTACTTAAAA--CAGAAATTGA-TAAGAAACT-CTCTTTCTCTC------GCC-ACCATACAA-TGG-GGCA-AAC-TC-ATT----------CCA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGGTCCAC--CC--CATTACAAC-TATCAAACCACGATTG--T--AGAATGTTT-------TAT-TGGT-CCGTA-CACCAACCTTTTGTATTCCG------CCAT-TTTTTA--TCTGTGCATTGAATC------TC---------GATCTGCTGAATC-GGAA---TA------AG--ACAATA---AGTGAGCTC-TG-TTCGCCAAT-AAGTGAATT--T------AACCT-GTA---GCGAACAAAATA-TTCATAGTAT------TTTG-TACCGTAACCGAAC-C-GTCA--TTTTAGACCCGCGGAG-AAC--A-TACCGC-GTG-AAACGTTTC
gi|6 : -------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACGAGTAA---AATT-TG---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC---GAGATTTGAGTGTA-AA--GTTCATCGTGAAAAGTCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTATAATAGTGTCA---TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CACCTGCTTCC-GCA--AACA--CGCGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCTGTCA-TAGTT--GA--CAGAATTGGATTAAG-AACTGCTC-CTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-TG-GAG--------------------TT-GATGCTAC---ATG--TTGC--TC--GA-GACCAC-TATC-AACCACG-TTG--T--AG-ATG--A-------TAT-T-TT-CCATA-C-C--ACCCTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATT-GGAA---TA------GG--AAAAT----AGCGAGTTC-TG-TTTGCCAATAAAA-AAAATAAT------AACCT-CTA---TCGAACCAAAGATTT-A-AGTTT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACTTCGATG-TATCGCT
gi|7 : TG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-TT-GACTATAGAT---AA------------AATT-AG---T--TTG--GTGA--TCT-ACCTG-T-CG--TA-------AGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGAG--A-ATTAC-A----------------------------A-TGTT-----------AAT---------------GTCAGG-TGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--AAAACAGAATTGTA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------CAG-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-TACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTCCG------CCAT-TTTTTA--TCTGT---TTGAATC------TC---------GATCTCTGA-ATC-GGAA---TA------AG--AAAATA---AGTGAGCTC-TG-TTCGCCAAT--AA-GAATT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGTCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG--AACGTTTC
gi|8 : -AAA--CT-CT-GACCA--GAT---GAGACAAGTTA---AATT-AG---T--GGG--GTGA--TCT-GCCTGAT-TA--TCT-CAC-AAGA--TTTAGATATA-AA--GTTCATCCTAAAAGATCA-TCCGG--A-ATTAC-AAT-----GTCACA------TTTAA-GAAA-AATC-----------AATAAG-TCTGCA---ATGTCAGA-AGAGAAAA-CGACCCTTGG-CGTATTGATGATAT-CTCCTGCTTCC-AAA--AACA--CATGTTCTGAAG-CAACAGAAGTTGCTGG-TATGGCTAG--GAA----GTACTTGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AAATGCTC-TTCCCTC------ACC-ACCATACAAGT-G-GGCAGAAC-TC-ATTG---------GAT-GG-GAATTTTCAACCTTAAAAT---ATT-GATGATAC---ATG--TCAC--CC--CA-GCCCAC-TATC-AATCATG-TTG--T--CG-TTG--TTGTTATATAT-T-GT-CCGTA-C-C--ACCT
gi|8 : C-TG-TT----AAA-AAA-AAAAC--CCCAAAAAACCT-GTA---TCAAACTGAAAA-TT-G-AGTAT------TTTG-TAACGTAACTGAAC-CGGCCA--TTATAGA-CCGCAGAG-AACCGA-TATCGTGGTA-TACTGTTTCgttaaaaaaaaaaccccaaaaaacctgtatcaaactgaaaattgagtattttgtaacgtaactgaaccggccattatagaccgcagagaaccgatatcgtggtatactgtttccc
gi|9 : aaactctgaccagatgagacaagttaaattagtggggtgatctgcctgattatctcacaagatttagatataaagttcatcctaaaagatcatccggaattacaatgtcacatttaagaaaaatcaataagtctgcaatgtcagaagagaaaacgacccttggcgtattgatgatatctcctgcttccaaaaacacatgttctgaagcaacagaagttgctggtatggctaggaagtacttggccatacttgacagaattggataagaaatgctcttccctcaccaccatacaagtgggcagaactcattggatgggaattttcaaccttaaaatattgatgatacatgtcaccccagcccactatcaatcatgttgtcgttgttgttatatattgtccgtaccac--GTTCATCTTAAAA-ATCAATCGGG--A-ATTCC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AGTAAG-TCTACA---TTGTCAGG-TGAGAAAAACGGCCCTCTG-CGCATTGGCGATGT-CT---GCTTCT-GAA--AACA--C--GTCCTTGAG-CAACAGAAGTTGCTGG-TATGGCCAG--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AATTGCTC-CTCTCTT------GCC-ACCATACA---------------TC-ATTG---------GAA-CG-GAGTTTTCAACCTT---AC---ACT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACT-TTG--TTGAT-ATA--T-------TGT-T-GT-CCGTA-C-C--ACC-TTCG-ATTCCG------CCAT-TTTGTAGGTCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAATTATAAGCGAGCTC-TG-TTCACCATT-AAA-AAAA---T------AACCT-GTA---TTGAACTGAAAA-TT-A-Acc
blockSeqs : A G C CA . A AA C G CTTACTACATACA . T A T T TCT G TAATT C CGT TC . . T A . AT C A G G . G A . . AAT CTAAGT C A AATAACATTGA A T C ATAG C A . C . TT . . . . GTAC A T AA AA T A T GTGATT G G C . G GATTGATTG A . C AAA GAA . GTC GT TG TT T . A A TTGAT TT TGTTATA C G G A A CA T AATAGA G T GG GCA GCGATC GATCATATGG A AAT CTTATA GG TATA . . AA T ACCCCAAAA T A T C T TTTGTC T A AT C A G A G
blockSeqs : A . . . . A A . . . . . . . . . A TA . . . . . . A . . . . T . . G . . . AAT . . . . T . C T . . . . . . . . . . . A . . A . . . . . G . . . AAA . . G . . . . T A . . . . . TAAG . . . . . . . . . . . C . GG . GATCTGCTGA . . . . A . . A . ATAAT . . . . . . . . . . . . T C
blockSeqs : A . . . . . . . . . G GA . . . . . . . . . . . T . . G . . . AAT . . . . T . C G . . . . . . . . . . . A . . . . . . . . G . . . . . . G . . . . . . . . . . . TAGA . . . . . . . . . . . T . . . GATCTCTGA . . . . A . . G . ATT . . . . . . . . . . . . T C
blockSeqs : . . . . . . . . G AA . . . . . . . . . . . A . . T . . . AAT . . . . T . T G . . . . . . . . . . . G . . . . . . . . G . . . . . . G . . . . . . . . . . . TAG . . . . . . . . . . . A . . . G . . . . . . . A . ATT . . . . . . . . . . . . A A
blockSeqs : . . . . . . . . G AA . . . . . . . . . . . A . . G . . . AAT . . . . T . C G . . . . . . . . . . . T . . . . . . . . T . . . . . . G . . . . . . . . . . . TAG . . . . . . . . . . . T . . . G . . . . . . . A . TTT . . . . . . . . . . . . T T
blockSeqs : . . . . . . . . G AA . . . . . . . . . . . T . . G . . . AAT . . . . T . T G . . . . . . . . . . . G . . . . . . . . G . . . . . . G . . . . . . . . . . . TAG . . . . . . . . . . . G . . . G . . . . . . . A . TTT . . . . . . . . . . . . T A
blockSeqs : . . . . . . . . TA . . . . . . . . . . . A . . A . . . AA . . . . A . C A . . . . . . . . . . . G . . . . . . . . G . . . . . . G . . . . . . . . . . . TAG . . . . . . . . . . . T . . . G . . . . . . . C . TTT . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . G . . . A . . . . A . C T . . . . . . . . . . . G . . . . . . . . G . . . . . . C . . . . . . . . . . . TCG . . . . . . . . . . . T . . . G . . . . . . . A . AT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . TG . . . . . . . . . . . T . . . G . . . . . . . A . TT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . T . . . G . . . . . . . A . AT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** ** ** ** ** AAT****** ** ** TAG***** A* ATT******** *** ** T*
originalCons : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
finalCons : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTACAAT------GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTGTAG-----ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAATA-AA-AAAATT--------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTGT-ACCGTTTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGTGAATTAAAAATGTGACAGTTTAATACATAACTTTTATTTTATTCATTCAAAACAAATAAGATATACTGTATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGACTATCATAAAAAAAATGTTGAACCCCTG
Unaligned ( gi|15 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTATTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCT
Unaligned ( gi|16 ): TAAGTGAATTAAAAATTTGACAGTTTAATACATAAGTTTTATTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCTG
Unaligned ( gi|17 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTAGTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCC
Unaligned ( gi|22 ): CTTCTCCATACGTTACCTATATTCAAGGGTAGATATTCAGGTATTAATTTGGTACAGGATACTTTGTAGCAATTCATATTGACATTTCAATTTTTTTAAGGCAATAATCAAATTTAAGCTATATATCAA
Alignments
lowQualScore : 1 1 11 1 11 1 2222222222222 111111111 111111 11111111111 111111 111111111 11111111 1111111 111 2222222222222222222 1111 11 11111111111
lowQualScore : 7 3 3 88 3 7 33 0 5 4444444444444 4 4 99 4 4 777 8 99999 4 777 55 55 55 4 8 4 55 4 4 4 4 55 2 3 55 3 222222222 000000 3 3 77777777777 7 3 2 6666 3 3 3 3 3 44 44 0 4 4 55 8888 2 4 55 88 3 3 3 000000 3 2 3 3 3 999999999 3 3 2 555 555 3 555 77 77 44 3 3 3 3 33333333 44 0000000 3 3 3 3 3 44 3 999999 3 4 44 000 888888 5555555555555555555 3 555 888888 44 2222 2 2 00 2 99999999999 6 888 3 3 3 888888 2 3 0 77 3 3 3 88 1
lowQualScore : . . . .. . . .. . . ............. . . .. . . ... . ..... . ... .. .. .. . . . .. . . . . .. . . .. . ......... ...... . . ........... . . . .... . . . . . .. .. . . . .. .... . . .. .. . . . ...... . . . . . ......... . . . ... ... . ... .. .. .. . . . . ........ .. ....... . . . . . .. . ...... . . .. ... ...... ................... . ... ...... .. .... . . .. . ........... . ... . . . ...... . . . .. . . . .. .
lowQualScore : 3 3 3 33 3 3 22 0 7 4444444444444 4 0 55 0 0 000 2 22222 0 000 55 55 55 0 0 0 55 0 0 9 0 00 8 6 00 6 222222222 555555 6 6 33333333333 0 6 0 9999 6 6 6 6 3 66 66 8 0 0 55 5555 3 0 00 66 6 6 6 555555 6 5 3 3 3 222222222 3 3 5 888 888 3 444 33 33 22 1 1 1 1 00000000 66 0000000 1 1 1 1 1 22 3 666666 3 6 66 444 888888 8888888888888888888 1 444 888888 22 7777 9 9 66 9 55555555555 2 555 1 1 1 888888 9 1 2 33 1 3 6 66 4
consensus : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
Reference ( family-1376 ) : AAATAAAGCAATTCTT-CC-AAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTNA---AATT-AG---T--GTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTNAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCATTGACGATGT-CTCCTGCTTCC-GAA--AACA--CACGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTCGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|1 : ATAC-------------CAAAA--TTTTATAT-AGAAGCC-CT-GG--AT---T---AAAACAAATGT---AATT-AG---T--TTGCCGTGAAGTCT-ACCTG-CGCG--TAT-CAC-A-GAGATTCAG-TGTA-AACAGTTC-TCCTAAAA-ATCA-TCGGGCCACATTACCAATTGTACGTTA-A------CATAG-AA---TATC-----------AATTAG-TTTA-A---GTG-CAGG-TGAGAAAA-CGACC--TTGACTCATTGACGCTGT-CTACTGCTTCCTGTA--AACAAACACATCCTAAAGACCACAGAAGTTG-TGACTATAGGCGCTTAGA----G-ACTCGGC-A-TACTT--GG--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCAT-CAAGTGG-GG-AGAACTTC-TTTG---------GAA-CGCGAGTTTTCAAGCTT---AC---ATTAGATGA-AC---ATG--T--C--CC--CA-GACAACTTATC-AACCACG-CTGGTT--AG-ATG--T---------T-T-GT-CCGAA-C-C--A-CTTTC--ATTCC-------C--T-TTTG-G--TTTCT---TTG-ATC------CT---------G---------ATT--GAA---TA------GG--AAAAT----AGCGAGCTCATGTTTTGCC-AT--AA-AAAAT--TCCGA--AACCTGGTATCCTCGAACCG-CAA-TT-A-AGTAT------TTTG-T-CCGTAACCAAAC-CGGCCAT-TTTTAAA-TCGCTGTG-AA-CGA-T
gi|10 : aatgtggactggaccatttttgtagtcccattcgaccttgcctcaatccacctttatgtcccggacctttgacactactcAGAAAGTA--TACA-AT------C-------------AAAA-CATTTTAT-T-TAA--CT-CT-GACTAAAGATTCTAA--CAAGTTA---AATT-AG---T--GTG--GTGA--TCT-ACC---T-TGATTAT-CAC-AAAAGATTGGGGTGTA-CA--GTTCATCCAAAAAGATCA-TCTGG--A-ATTAC-AA------GTTACA------CTTAACAAAG-TA-C-----------AATAAGTTCTACA---TTGTCAGG-TGAGAAAA-T-GCCCTTTG-CGCATTGACGATGTCCTCCTGC-TCC-GAA--AACA--AACCTTCTGA
gi|11 : tacaatatggtattttcgatcgataacactcatatataaaaataaatttaaaataaagcattcacCTT--GAA-CAGAATTAGA-TAAG-GACTG-TC-TTGCTTC------ACCGACCACACAAGTGGCAGAAAAAC-TC-TCTG---------GAAACG-GAGTTTTCAACCTT---GCGAAATT--ATGCTACGTCATG---CACA-TC--CA-GACAAC-TAT--AACCATG-TTG--------ATG--T-------TAT-T-GT-CCGTAAC-C--ACCTTTCG-ATT--GAATAGACCACGTTTGTA--TCTGTGG-TTGAATC------TT---------G---------ATCAGGAAAATTA----------AAAAC----A-CGAGCTC--G-TTCACAAAT-AAA-AA-----T------AACCTTGTAA--TCGAACGGAAAA-TT-A-TGTAT------TTTG-AACTGTAACCGAACACGGCCAATTTTCAGA-CCGTGGAG-AAnnnnnnnnnnnnnnnnnnnnnnnnncaccgtcattctgtcatccactgttttgcaaagcgatatatatctcttgtcagcagctctttttcgccacca
gi|12 : ACAA-TGG-GACAGAAC-TCGATTG---------GAG-CG-GAGTTATCGA-CTT---AC---ACT-GCT-CTAT---ATG--CAAC--CC-----GA-----TAT--AATC---------------ATG--T-------TATCT-GTGCCGTA-C-C--ATCTTTCG-ATTCCG-------CAT-TTCG----TTTG----TTGAATC-------C---------G---------ATC-GGAA---TA------GG---AAAT----AG-GCGCTC-TG-TTCACAAAT-GAT-GAAA---T------AACTT-GTA---TCGA--CAAAAA-TG-A-TATATTTTGTCTTTG-TACTGTAACC-AAG-CGG--A--TTTTAG--CCG-AGAG-AACCGAGTACCG-GTTGTTACTGTTTC
gi|14 : -------TAT-T-GT-CCGTA-C-C--ACCTTT-G-AATCCG------CCAT-TT-GCA--TACGC---TTGAATCGCGATCTC---------G---------ATC-AGAA---TA------GGGGAAAAT----AGCGAGCAA-TG-TTCACCAAT--AA-AAAAT--T------AAACT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTGTTACCGTATCCGAAC-CGGACA--TTTTAGA-CCACGGAGAAACCAA-TACCGCAGTG-AAGCGTTTCa
gi|18 : tgTGCTTCC-GAA--AACA--CACGTCATAAAG-CAACAGA-GTTGCTGG-TATGGCCAC--GAA----GTACTCAGCCA-TA-------------ATTGGA-TAAG-AAATGCTC-TTCTCTC------GCC-ACCATACAAG--G-GGCAGAAC-TC-ATTGGATTGATTGGAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGT-TCAT--CC--CA-GACAAC-TATC-AACCACG-TTG--TA-AG-ATaccc
gi|19 : AAATAA-GCAATTTTC-TC-CAA--ACAAGTCTTTCAATG-CAAGAAAGTAAATACACATGGAATACCTTACTACATACAAAAAAC-TTTTCT-T-AAA--CTTCT-GACTATAGAT----TGACAAGTTAATTAATTCAGCGTT--GTG--GTTA--TCT-TACTGAT-----TATCCACAAAAAGATT-AGG
gi|2 : gatatccccatatataataaaaaaactttaAAATAAAATAATTCTT-CCCAAA--AAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ATG-AATAA-------------AAAAACATTTTCT-T-AAA--CT-CT-GAATATAGAT---AAAACAAGTGA---AATT-AG---T--GTG--GTGG--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAGAAGATCA-TCCGA--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTTATTGACGATGT-CTCCTGCTTCC-GAT--AACA--CACATCCTAAAG-CAACAGAAGTTGCTGG-TATTGCCAC--GAT----CTACTCAGCCA-TACTT--GA--AAAAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTGAAA------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AATCATG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACTTTTCA-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATG------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCGAGCTC-TG-TTTGCCAAT-AAA-AAAAT--T------AACCT-GTA---TCAAACCGAAAA-TT-A-AGTAT------TTTT-CACCGTAACTGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG-TACCGTTTC
gi|20 : GGTGTC-AA--ATTCATCCTAAAAGATCA-TCGGG--A-ATTAC----------TTACA------CTTAG-AAAAATATC-----------AATTAG-TCTACA---GTGTCCGG-TGAGAAAA-CTGCCCTTTG-CTCATT---GATGT-CTCCTGCTTCC-GA------A--CACGT
gi|21 : TGCTAC---CTA--TCGCTGCCTTCA-GTCCAC-TACC-AACCACG-TTG--T------TG--T-------TAC-T-AT-CGGTG-C-C--AACTTCCG-TTTCGG------CCAT-TTTGAA--TTTAA---TTGAATC------TC---------G---------ATC-GGAA---TA------GG---TAAT----AGCGAGCTT-TG-TTTACAAAT-AAA-Agcggcatccgtccgttaagaatag
gi|23 : ttac------TC---------G---------ATC-GGAA---TACTTATAGG--AAAAT----GGTGAGCTC-TG-TTCGCCAAT-AAG-AAT-T--T------AACCT-GCA---TCGAACTGAAAA-TT-A-AGCAT------TTTG-TACCATAACCAAAC-CGGCCA--TTTTAGA-CCGCAGAc
gi|24 : aT------TTTG-TACTGTAACTGAAG-CAGACA--TTTTGTA-CTGTGGAG-AACCGA-TACCACGGTA-TACCG
gi|25 : G-TACCGTAACCGAAC-CTGCCA--TTTTAGA-CTGCAGAG-AACTGA-TACCGCGGTcctt
gi|26 : -GCA---TCGAACTAAAAA-TT-A-AGCAT------TTTG-TACCATAACC
gi|3 : AAATAAAGCAATTCTTGCC-AAACAAAAAGTTTTT-AATGACAAGAAAGTAA-TACA-ACG-AATGC-------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACAAGTAA---AATT-GG---T--GTG--GATA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTTAGGTGTA-AA--GTTCATCCTAAAATATCA-TCAGG--A-ATTAC-AAT-----GTTACA------CTTAA-AAAA-TATC-----------AATTAG-TCTATC---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-TTCATTGACGATGT-CTCCTGCTTCC-GGT--AACA--CTCGTCCTAAAG-CAACGGAAGTTGCTGG-TATGGCCAC--GAA----GTCCTCAGCCA-TACTT--GA--CAGAATTGGA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--TC--CA-GACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTATG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAAT----AGCAAGCAC-TG-TTCGCCAAT-CAA-AAAagagc
gi|4 : tacaattagtactagttttcgatacgatacactcatatatgaaataaacttta-AATAC-------------AAAAACATTTTCT-T-AAAA-TT-CTTGACTATAGAT---AAGACAAGTAA---AATT-AA---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC-AAGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGGG--A-ATTAC-AAT-----GTTACACTAAGTCTTAG-ATAA-TATCAATAACATTGAAATTAG-TCTACA---GTGTCAGG-TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CTC----------AATTAACA--CACCTCCTAACG-CAACAGAAGTTGCTGG-TATTGCCAC--GAAGTACGTACTTGGCCA-TACTT--AA--CAGAAGTGGA-TAAG-AACTGCTC-TTCCCTCGTGATTGCC-ATCATACAATTGG-GGCGAAAC-TC-ATTG---------GAA-CG-GAGTTTTCAAGCTT--------ATT-A----TAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACG-TT---T---G-AC------------------T-CTGTA-C-C--ACCTTTCG-ATTCCG------CCAT-TTTTGA--TCTGT---TTGAATC------CCGATCATATGG---------ATC-AGAA---TA------GG--AAAAT----ATCGAGCTC-TG-TTCGCCAAT--AA-AAATT--T------AACTT-GTA---TCGAACCGAAAA-TT-A-GGTAT------ATTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGt
gi|5 : -AATAC-------------AAAAACATTTTCT-TTAAA--CT-TT-GACTATAGAT---AA-------------ATT-AG---TTCG-G--GTGA--TCTTACCTG-T-CG----------AAGAGATTAAGGTGTAGAA--GTTCATACTAAAAGATCA-TCGAG--A-AT------------ATTACA---------------A-TGTT-----------AAT---------------GTCAGGCTGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-C-ACAGAAGT--CTGG-TATGGCCAC--GAA----GTACTC-GCCATTACTTAAAA--CAGAAATTGA-TAAGAAACT-CTCTTTCTCTC------GCC-ACCATACAA-TGG-GGCA-AAC-TC-ATT----------CCA-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATGGTCCAC--CC--CATTACAAC-TATCAAACCACGATTG--T--AGAATGTTT-------TAT-TGGT-CCGTA-CACCAACCTTTTGTATTCCG------CCAT-TTTTTA--TCTGTGCATTGAATC------TC---------GATCTGCTGAATC-GGAA---TA------AG--ACAATA---AGTGAGCTC-TG-TTCGCCAAT-AAGTGAATT--T------AACCT-GTA---GCGAACAAAATA-TTCATAGTAT------TTTG-TACCGTAACCGAAC-C-GTCA--TTTTAGACCCGCGGAG-AAC--A-TACCGC-GTG-AAACGTTTC
gi|6 : -------------AAAAACATTTTCT-T-AAA--CT-CT-GACTATAGAT---AAGACGAGTAA---AATT-TG---T--TTG--GTGA--TCT-ACCTG-T-CG--TAT-CAC---GAGATTTGAGTGTA-AA--GTTCATCGTGAAAAGTCA-TCGGG--A-ATTAC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AATTAG-TCTATAATAGTGTCA---TGAGAAAA-CGGCCCTTTG-CTCGTTGACGATGT-CACCTGCTTCC-GCA--AACA--CGCGTCCTAAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCTGTCA-TAGTT--GA--CAGAATTGGATTAAG-AACTGCTC-CTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------GAA-TG-GAG--------------------TT-GATGCTAC---ATG--TTGC--TC--GA-GACCAC-TATC-AACCACG-TTG--T--AG-ATG--A-------TAT-T-TT-CCATA-C-C--ACCCTTCG-ATTCCG------CCAT-TTTGTA--TCTGT---TTGAATC------TC---------G---------ATT-GGAA---TA------GG--AAAAT----AGCGAGTTC-TG-TTTGCCAATAAAA-AAAATAAT------AACCT-CTA---TCGAACCAAAGATTT-A-AGTTT------TTTG-TACCGTAACCGAAC-CGGCCA--TTTTAGA-CCGCGGAG-AACCGA-TACTTCGATG-TATCGCT
gi|7 : TG-AATAC-------------AAAAACATTTTCT-T-AAA--CT-TT-GACTATAGAT---AA------------AATT-AG---T--TTG--GTGA--TCT-ACCTG-T-CG--TA-------AGAGATTAAGGTGTA-AA--GTTCATCCTAAAAGATCA-TCGAG--A-ATTAC-A----------------------------A-TGTT-----------AAT---------------GTCAGG-TGAGAAAA-CGGCCCTTTC-CTTATTGACGATGT-CTCCTGCTTTT-GAA--AACA--CACGTCCTTAAG-CAACAGAAGTTGCTGG-TATGGCCAC--GAA----GTACTCGGCCA-TACTT--AAAACAGAATTGTA-TAAG-AACTGCTC-TTCTCTC------GCC-ACCATACAAGTGG-GGCAGAAC-TC-ATTG---------CAG-CG-GAGTTTTCAAGCTT---AC---ATT-GATGCTAC---ATG--TCAC--CC--CA-TACAAC-TATC-AACCACG-TTG--T--AG-ATG--T-------TAT-T-GT-CCGTA-C-C--ACCTTTTG-ATTCCG------CCAT-TTTTTA--TCTGT---TTGAATC------TC---------GATCTCTGA-ATC-GGAA---TA------AG--AAAATA---AGTGAGCTC-TG-TTCGCCAAT--AA-GAATT--T------AACCT-GTA---TCGAACCGAAAA-TT-A-AGTAT------TTTG-TACCGTAACCGAAC-CGGTCA--TTTTAGA-CCGCGGAG-AACCGA-TACCGCGGTG--AACGTTTC
gi|8 : -AAA--CT-CT-GACCA--GAT---GAGACAAGTTA---AATT-AG---T--GGG--GTGA--TCT-GCCTGAT-TA--TCT-CAC-AAGA--TTTAGATATA-AA--GTTCATCCTAAAAGATCA-TCCGG--A-ATTAC-AAT-----GTCACA------TTTAA-GAAA-AATC-----------AATAAG-TCTGCA---ATGTCAGA-AGAGAAAA-CGACCCTTGG-CGTATTGATGATAT-CTCCTGCTTCC-AAA--AACA--CATGTTCTGAAG-CAACAGAAGTTGCTGG-TATGGCTAG--GAA----GTACTTGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AAATGCTC-TTCCCTC------ACC-ACCATACAAGT-G-GGCAGAAC-TC-ATTG---------GAT-GG-GAATTTTCAACCTTAAAAT---ATT-GATGATAC---ATG--TCAC--CC--CA-GCCCAC-TATC-AATCATG-TTG--T--CG-TTG--TTGTTATATAT-T-GT-CCGTA-C-C--ACCT
gi|8 : C-TG-TT----AAA-AAA-AAAAC--CCCAAAAAACCT-GTA---TCAAACTGAAAA-TT-G-AGTAT------TTTG-TAACGTAACTGAAC-CGGCCA--TTATAGA-CCGCAGAG-AACCGA-TATCGTGGTA-TACTGTTTCgttaaaaaaaaaaccccaaaaaacctgtatcaaactgaaaattgagtattttgtaacgtaactgaaccggccattatagaccgcagagaaccgatatcgtggtatactgtttccc
gi|9 : aaactctgaccagatgagacaagttaaattagtggggtgatctgcctgattatctcacaagatttagatataaagttcatcctaaaagatcatccggaattacaatgtcacatttaagaaaaatcaataagtctgcaatgtcagaagagaaaacgacccttggcgtattgatgatatctcctgcttccaaaaacacatgttctgaagcaacagaagttgctggtatggctaggaagtacttggccatacttgacagaattggataagaaatgctcttccctcaccaccatacaagtgggcagaactcattggatgggaattttcaaccttaaaatattgatgatacatgtcaccccagcccactatcaatcatgttgtcgttgttgttatatattgtccgtaccac--GTTCATCTTAAAA-ATCAATCGGG--A-ATTCC-AAT-----GTTACA------CTTAG-AAAA-TATC-----------AGTAAG-TCTACA---TTGTCAGG-TGAGAAAAACGGCCCTCTG-CGCATTGGCGATGT-CT---GCTTCT-GAA--AACA--C--GTCCTTGAG-CAACAGAAGTTGCTGG-TATGGCCAG--GAA----GTACTCGGCCA-TACTT--GA--CAGAATTGGA-TAAG-AATTGCTC-CTCTCTT------GCC-ACCATACA---------------TC-ATTG---------GAA-CG-GAGTTTTCAACCTT---AC---ACT-GATGCTAC---ATG--TCAC--CC--CA-GACAAC-TATC-AACCACT-TTG--TTGAT-ATA--T-------TGT-T-GT-CCGTA-C-C--ACC-TTCG-ATTCCG------CCAT-TTTGTAGGTCTGT---TTGAATC------TC---------G---------ATC-GGAA---TA------GG--AAAATTATAAGCGAGCTC-TG-TTCACCATT-AAA-AAAA---T------AACCT-GTA---TTGAACTGAAAA-TT-A-Acc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAGTGAATTAAAAATGTGACAGTTTAATACATAACTTTTATTTTATTCATTCAAAACAAATAAGATATACTGTATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGACTATCATAAAAAAAATGTTGAACCCCTG
Unaligned ( gi|15 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTATTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCT
Unaligned ( gi|16 ): TAAGTGAATTAAAAATTTGACAGTTTAATACATAAGTTTTATTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATTAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCCTG
Unaligned ( gi|17 ): TTAAGTGAATTAAAAATTTGACAGTTTAATACATAAATTTTAGTTTTATTCATTCAAAACAAATAAGATATATTATACTTTATAATAAAGTGTAATATAAGTATAATCAATGTGGACTTGGACAATTTTTTCCTTGGACTTGCCTAGAATCCACCCTTTATGTCCCGGACTTGATCATCATAAAAAAAATTTTGAACCCC
Unaligned ( gi|22 ): CTTCTCCATACGTTACCTATATTCAAGGGTAGATATTCAGGTATTAATTTGGTACAGGATACTTTGTAGCAATTCATATTGACATTTCAATTTTTTTAAGGCAATAATCAAATTTAAGCTATATATCAA