lowQualScore : 11111111 22222222222222
lowQualScore : 2222 333333 1111 3333333333333333 1111 1111111 1 1111111 2222 111 444 1111 2222 222222 111 11 11 11 1111 22222222222 11111 1 2222222 11 222222 2 111 111 111 44444444444444444444444444444444 1 1 111 11 22222 2222222 11 33333333 11 222 11 11111111 1111 222222222 1 22222 1111 44444444444444 55555555 1 3333333 1 1 1 11 1 2222 11 4444444444444 11 111 33 22 33333333 1 1 55 1 1 777 33333333333333
lowQualScore : 3 1111 66 777777 5 66 5 5 1 1 5 0000 777 4444444444444444 5 0 0000 1111111 5 0 1111111 8 6 99 7 0 5 99 5555 111 6 6 111 6 9999 3 8 8 8 5555 0 111111 444 0 11 1 11 8 11 2 99 777 99 6 6 99 4444 11111111111 66666 5 77 7 8888888 0 5 33 5 77 222222 2 77 5 5 5 5 5 77 5 5 555 5 5 5 5 5 5 5 5 111 2 777 777 8 5 5 1 5 5 000 77777777777777777777777777777777 5 0 1 1 77 5 1 77 5 3 99 888 44 6 6 33333 8 6666666 11 8 999 3 8 8 77777777 99 3 444 8 8 11 6 6 6 33333333 99 1 0000 3 1 666666666 6 0 1 6 5 88888 6 7777 77777777777777 3 55555555 4 0000000 0 6 0 3 77 3 6 3 9999 66 9999999999999 00 444 00 6 33 6 66666666 6 6 7 6 6 6 5 55 5 5 6 000 55555555555555 6
lowQualScore : . .... .. ...... . .. . . . . . .... ... ................ . . .... ....... . . ....... . . .. . . . .. .... ... . . ... . .... . . . . .... . ...... ... . .. . .. . .. . .. ... .. . . .. .... ........... ..... . .. . ....... . . .. . .. ...... . .. . . . . . .. . . ... . . . . . . . . ... . ... ... . . . . . . ... ................................ . . . . .. . . .. . . .. ... .. . . ..... . ....... .. . ... . . . ........ .. . ... . . .. . . . ........ .. . .... . . ......... . . . . . ..... . .... .............. . ........ . ....... . . . . .. . . . .... .. ............. .. ... .. . .. . ........ . . . . . . . .. . . . ... .............. .
lowQualScore : 2 7777 99 222222 0 99 7 7 4 4 0 6666 666 0000000000000000 0 2 6666 9999999 0 0 0000000 0 7 22 3 1 7 77 5555 777 7 7 777 7 3333 2 0 0 0 0000 8 000000 000 8 00 0 00 0 00 5 22 000 22 7 7 22 2222 22222222222 00000 7 99 0 0000000 1 7 66 7 99 111111 1 99 7 7 7 7 7 99 0 0 999 0 0 9 0 0 0 0 0 111 2 888 222 2 0 7 7 7 7 000 00000000000000000000000000000000 7 6 7 7 99 7 7 99 7 2 22 333 55 7 7 00000 0 0000000 00 0 222 8 0 0 00000000 00 2 000 0 0 00 7 7 7 77777777 22 7 0000 3 0 000000000 0 8 0 7 7 33333 7 0000 00000000000000 0 22222222 2 2222222 0 0 0 3 00 3 7 0 3333 00 5555555555555 00 555 00 0 00 0 00000000 0 0 0 0 0 0 0 00 0 0 0 000 00000000000000 0
consensus : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--TC-AT-TTGTTT--CTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--C-GTCAGG----AGAA--T-AA-CG-A-CATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-ACTN-AGTAT--TTTAC---A-CGG-AAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-T-GG-CTC----TAAGT-----AA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTT--ACA-CAC--AGG-A-CTGGGT--AAAT----AGAAATT------T--ACGGG--A--TG-ACGG--CAAGTG-CTGA-CAAGTTC-TG--A-AC--GC------TTATTC-AA--TG-AAG-AT-TTTT-CGG-GAT--G-GC-AAAT--TA-TAAA-GNATTTCT-C-T-GAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AG-TACGAT-G-A---TGTT--TTT-----CCC---CCAAAA---TTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGTC-C-AT-ATGAA----TTT-GCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAA-TGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAATTGCAC-N------TTTTTTC-----ATCGG-TCTGGGG-CACTTGTTTGATA-GAA-NCG-TTGTGCGAGTCNATCGCA---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATNGGANATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGC
Reference ( gi|1 ) : AAAATTGATGACTAGATGGGTTTC--A-TCACA--AT---TC-AT-TTGTTT--CTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--C-GTCAGG----AGAA--T-AA-TG-A-CATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-ACTT-AATAT--TTTAC---A-CGG-AAAATA---ATTTTA-GTAACTCGTACAATAGTTCAA-T-GG-CTC----TAAGT-----AA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTT--ACA-CAC--AGG-A-CTGGGT--AAAT----AAAAAAT------T--ACGGG--A--TG-ACGG--CATGTGGCTGAATAAGTTC-TG--A-AC--GC------TTATTCCAA--TG-AAG-AT-TTTT-CGG-GAT--G-GC-AAAC--TA-TAAA-GTATTTCT-C-T-GAAA-TA-CATA-AATTGCACTTT---TT--GGAAATGTTCG-AG-TACGAT-G-A---TGTT--TTT-----CCC---CCAAAA---TT-----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTCTATC--TTTTA---ATGTT-C-AT-ATGAA----CTT-GCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAA-TGGG--------TGT--GGTTGGCAT-G-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACCTTTGCCAAATAAAC--AA--TTCCG-TGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAATTGTAC-G------TTTATTC-----AACGG-TCCGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGATGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAACTGGGCGTAGAACGTTTCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCAAGTTTGTTTTTACGTTACTATCATATGGAGG-------GTTGAATCATGTGATGTTGTGCGAACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTTGTTGTATGCTAGCTTGTATT--TAGCCGCTTTCATCGACCGCTTTTTGGTATATGCCAGCAGCTTTGATGAA---TTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGACG
gi|10 : AAATTTGCTGA-TAGATGGATTTC--AATCACACAATA--TC-AT-TAATTT--CTCTAAC-AGC-------G-TAAGG----GGGACAT-TCCCTCCCA-----------C-T--C-GTCAGG----AGAA--T-AATTG-A-CATTCTAT---AATACTGTA-A--CG-AAAAACA-CTACACG-A
gi|2 : cctatatattAAATTGATGAC-AGATGGGT--C--A-ACACA--ATA--TCGAT-TTGTTT--CTCTA-C-AGTCTGTT-CG--AAGA----GG-ATGTATCCCC-TCA-------------T--C-GTCAGG----AGAA----GA-TG-ACCATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACGAACTT-AATAT--TTTAC---A-CGGAAAAATA---ATTTTA--TAACTCGTACAATAG-TCAA-T-GG-CTC----TAATA-----AA---CTCGTAC--ATTC--GTTGTT-GA--CCAT-GTTCAACA-C-C--AGGAA-CTGGGT--AAAT----AAAAATT------T--AC-GG--A--TG-ACGG--CAAGT-GCTG-ATAAGTTC-TG--A-AC--GC-------TATT-CAA--TG-AAG-AT-TTTT-CGG-GATTGG-GC-AAAT--TA-TAAA-GTATTTCTGC-T-GAGATTA-CA-A-AGTTGCATTTT---TT--GGAAATGTTTGAAG-TTAGAT-GTA---TG-T--TTT-----CCC---CCAAAAAATTT-----CCCACCATGATTTT--T-AATTCAA--TATCTTTTATC--TTTT-----TGTC-C-AT-TTGAA----TTT-GCTGAG-------CTCAAGGTGGCG-TTTTTTTTT-G-TGGGA-TACGGAA-TGAA-TGGGT-------TGT--GGTTGG-ATAA-TCTAGATTTG-AACTCGGGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---TCTGTC--CAT--C-ATTGGCTATAA-CTTTGCCAAATAAACCAGA--TTCCGTTGAGCGCGACATTCGCCGTTTAGCGGGCA-TTG-GT-----CATTT----ATT--------------CCGGCAATTGCACTT------TTTTTTC-----ATCGGTTCTGGGG-CACTTactgagtacagagtttcac
gi|4 : ataatttctagagtggctcaacgtgatctcacggagctatatcATTGATGACTAGATGGGTTTC--AATCACA--ATA--TC-AT-TTGTT---CTCTA-C-AGCCTGTTTC--TAAGA----GGGATGTTTCCCCCTCA-----------C----C-GTCAGG----AGAA--T-AT-GG-C-CATC---T---AATAT-ACA-A--CGAAAAAGCACCTGCACG-ACTTTGATAT--TTTAC---ATCGG-AAAATG---ATTTTA-GTAACTCG-ACAATAGTTCAA-T-GGGCTC----TAAGT-----AA---CTCGTAC--ATTG--GTTGTTTGA--CCATGGTT--ACA-TAC--AGG-A-CTGGGT--GAAT----AAAAATT------T--ACGGA--A--TG-ACGG--CAAGTG-CTGA-TAAGTTC-TGG-A-AC--GT------TTATTC-AA--TG-AAG-AT-TTTT-CGG-GAT--G-GC-AAAT--TAATAAA-GTATTTCT-C-TTGAGA-TA-CATA-AGTTGCACTTT---TTTGGAAAATGTTCG-AG-TACGATTG-A---TGTT--TT-------CC---CCAAAA---TTTC---CCCA-CATGATT----G-TAATCAA--TAT-TT-TATCCTTTTTA---ATGTC-CCAT-ATGAA----TTTTGCTAAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAA-TGGG--------TGTG-GGTTGGCAT-ATTCTAGATTTGAAACTC-GGTAGTTTTGCT-AGTCCCA-CATAGCTTTTGTTTCC---T-TGTC--C-T--CAATTGGCTTTAACTTTTG-CAAATAAACA-AA--TTCCGTTGAGCGCGACTTCCGCCGTTAAGCGGGCA-TTGCGT-----C-T
gi|13 : ATTGATGGCTAGATGGG--TCA-A-TCACA--AT------AT-ATGTTTTCCTCT--C-ATCC---TTCG-TAAGA----GGATTG----CCCCTCA-----------CGT--C-GTCTAG----A-AA--T--A-TGAA-CATC---T---AATA
gi|20 : ATTGATGACTGGATGGGTTTCA-A-TCACA--ATA--TC-AT-TTGTTT--
gi|15 : tTTAATGACTAGATGGGTTTCCAA-TCACA--AT---AT-GTATTGTTT--CTCTA-C-AGCCTGTTTCGTTAAGA----GGGATGTA-CCCCCTCA-----------C-T--C-GTCAAG----GAAA--T-
gi|5 : --A-TCACA--ATAAGTC-AT-TTGTTT--CTCTA-CGAGCCTGTTTCG-TAAGATCGAGAGATGTACCCCCTTCAAGAGTTTTTCAC-TAGC-GTAAGGGTGGAGAA--TCAA-CG-AACATC---TTATAACAC-ACA-AAACAAAGAAAGAC-TGCACG-ACTT-AATAT--TCTACTACA-CAG-AAAATAC--ATTTTACGTAAGTCG-ACAATAGTTCAACT-GG-CTCG---TAAGT-----AAACTTTCGTAC--ATTG--GTTGTT-GG--C-ATG-TT--ACAACAC--AGG-A-CTAGGT--AAATTTGTAAAAAACCAATTAT--ACGGG--AAATG-ACGG--CAAGTG--TGACTAAGT-C-TAGAA-AC--GCG-----TTATTTCAAAGTGTAAGTAT-TTTA-TTG-GAT--GCGCTAAATG-TA-TAAAAGTATTTCT-C-T-GAGA-TA-CATA-AGTTG-GCTTT---TT--GGAAATGTTTG-AGTTACGAT-G-A---TGTTTATTT-----CTCCTTCCAAAAT--TT-----CCCA-C-TG-TTTT--G-T----AA--TA--------C--TTTTAG--ATGTCGC-ATAATGAATAGTTCT-GCTGAGGCAAAAACTC--GATGGCGTTTCTTTTAT-GTTGGGATTACGGAATTGAATTGGC--------TGTTGGGTTGGCAT-
gi|17 : gaaatgataaggatgttcttacaACA--ATA--GC-AT-TTATTT--CTCTA-C-AGACTGTTTTG-TAAGA----GGGATAAATCCCCCTAA-----------T-T--C-GTAAGG----AGAA--A-AA-TG-A-CATC---T---AA
gi|10 : G-TGGGA----GGGA-ATGTCCCCCTTA-----------C-G--CTGTTA-G----AGAAATT-AA-TG-A-TAT
gi|16 : cctatatattaaatttgctgatagatggatttcaatcacacaAA--T-GG-CG-A-CATC---T---AATAC-ATGCA--CG-AAAAACACCTACACG-ACTG-AGTACAGGTTAC---A-CAG-AAAATACTGATTGTG-GTAAC----ACAATAGTtcgtcaggagaataattgacattctataatactgtaacgaaaaacactacacgaactgagtacagagtttcac
gi|19 : -A--CGAAACA-CACCAACACG-ACTG-AGTACAGGTTAC---A-CAA-AAAATACAGGTTCTA-GTAAC
gi|7 : AAAAATACCTACACG-ATTG-AGTA-------C---A-CGA-AACATACTGGTTCTA-GTAAC----ATAATAGTTac
gi|8 : tacatcaccccgCTCGT-TAACA---CAA-TAGG-CTCCCGTTAAGGGGGCAAA---CTCGTACCAAGCGTAGTTGGT-GAGCCCATGGTT--ACA-AAC--AGG-AACTGAGTCTAAAT----AGAAAAT------TTTACGGGGAA--TGGACAGGTCAAGTAGCTGACTAATTCCCTG--ATATCAGCCCCATTTTATTC-AA--TG-AAG-GCCTTTT-CGGCGAT--G-GC-AAACATTA-TAAA-GAATTTCT-CTT-GAAA-TA-AATA-AGTTAC-CTTTCTGTT--GAAAGTGGT-G-AA----GAT-G-AGATTGTT--TTTTACTACCC---CCACGA---TTTCATCCCCA-C-TGTTTTTTAGTTAGTCAAGCTAT-TTgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|7 : -T-GG-TTC----TA-GT-----AA---C----AT--AATA--GTTGCT-AA--GCATTGTT--ACA-CACATATG-A-ATGTGT--AACT----AGAAATT------T--GCGGGA-A--TG-GCGG--TAAGT-ACCG-ACAAGTTC-TG--A-AC--GC------TTATTCAAA---G-ATG-AT-TTTT-CAG-GAT--G-AC-AAAT--TA-TAAA-GAATTTCT-C-T-AGAA-TG-CATAGGGTTTTTTTTT---TT--GGtg
gi|11 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatacCATGGTT--ACA-CTC--AGG-A-CTGGGT--AAAT----AGAATTT------T--ACGGG--A--AT-ACGG--CGAGTG-CTGA-CAAAATC-TG--A-AA--GC------TTATTC-AA--TG-AAG-GT-TTTTTCGG-GAT--G-GC-AAAT--CA-TAAA-GAATTTCT-C-T-GCAA-TA-CATA-AGTTACATTTG---TT--TGAAATGTTTG-tttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|6 : aag-ACGG--CAAGTG-CTGA-CAAGTTC-TG--A-GC--GC------TTATTC-AA--TG-AAG-AT-TTTT-CGG-GAT--G-GC-AAAT--TA-TGAA-GAATTTCT-C-T-AAAA-AAACATG---TTACACTTT---TG--TGAAATGTTTG-AG-TATGAT-G-A---TGTT----------------------------------------GATAAT--G-TAGTCAG--TAT-TTTTATC--TTCTA---ATGTC-C-AT-ATGGA----TTT-GCTTAG-------CTC--GGTGGCT-TTCTTTTTTTG-TGGGATTACGGAA-TGAA-TGGG--------TGT--AGTTGGTAT-A-TCTAGATTTG-AACTT-GGTG--TCTGCT-AGACCCA-CATAGC-TTTGTT--C---C-TGTC--CGT--C-ATTGGCTATAACTTTTGCTAAATA------------------GTGCGACATTCACCGTTAAGCGGGCC-TTG-AT-----C-TTT----ATT--------------CCGGCAATTGCA
gi|3 : t-GC-AAAT--TA-TAAA-GCATTTCT-C-T-GAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AG-TACGAT-G-A---TGTT--TT-------CC---CCAAAA---TTT----CCCT-CATGATTTT--G-TAATCAA--TAT-TTTTATC--TTTTA---ATGTC-C-AT-ATGAA----TTT-GCTGAG-------CTC--GGTGGCG-TTCTTTTTT-A-TGGGACTACGGAA-TGAA-TGGGTGTGGAACTGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCA
gi|7 : TTT---TT----ACATATTTG-AG-TATGAT-G-A---CATT--TTT-----CTT-----AAAA---TTT----CCCA-CGTGATTTT--G-TAGTCAA--TAT-CTTTATT--ACTGAACTATGTA-C-AT-ATttccggcaattgcactttttttcatcggtctgagacacttgtttgatagaagcgttgtgcgagtccatcgcattttgcatagatggcatactttaatggtgtttctgttgataattggacatagaacgtggcccatcgggaaacactcatctatgatcttaaggaactgtttgccttagtttgtttttacgttactatcatatggggatgggggtgttgaaccatgtgatgttgcgcgtacgatttcgtctgctgtttgtcctagtttttgccgattcgtcgtatgttagcttctatttatagccgctttcctcgagcgctttttggtatatgccagcagctttgacgaattcttctttgtccgatgaagttgatgacaatcggtggttaagctttaattatggaaggc
gi|9 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatactggttctagtaacataatagttgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgtttttttttttTTG-AACTC-G-TG--TTTGCTTAGTCCCTTCAT-GC-TTTGTT--TCTTT-TGTCAGCATTTC-AT-GGCTATAACTTTTGC-AAATAA-C--AAATTTCCG-TGAGCGTG----TCGCCGTTAAGACGGCATTTG-GTTAC--C-TTT----ATTATTATTGTATCTGCTCGGCAATTGTGCAG------CTTGTTTTCATAAGCGG-TCTGGGGAGACTTGTTTGATACGAATTCGTTTGTGCGAGataccacttggctgtg
gi|14 : T-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--G-ATTGACTATAACTTTTGCCAAATAAAC--AA--TTCCG-TGGGCGCGACATTCGCCTTTAAGCGGGCA-TTG-
gi|3 : CA-TTG-GCTATAAC-TTTTGCCATT--------------CCGGCAATTGCAC-T------TTTTTTC-----ATCGG-TCTGAGA-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCCATCGCA---TTTTGCATAGATGGCATAC-------------TTTAATGGTGTTTCTGTTGATAATTGGACATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGG
gi|12 : gcaaattataaagcatttctctgaaatacataagttgcactttttggaaatgtttgagtacgatgatgttttccccaaaatttccctcatgattttgtaatcaatatttttatcttttaatgtccatatgaatttgctgagctcggtggcgttcttttttatgggactacggaatgaatgggtgtggaactgtggttggcatatctagatttgaactcggtgtctgctagtcccacatagctttgttcttgtccat-GT-----C-TTT----ATT--------------CCGGCAATTGCAC-ACGATTTTTTTTTC-----ATCGG-TCTGGGG-CACTTGTTTGATA-GAA-ACG-TTGTGC-AGTCAATCGCAAATTTTTGCATAAGTG
gi|18 : tt---TTTGGCATG--TGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATAAGAAATAGAAC
gi|21 : TCTTTGTCCGATGAAATTGATGACAATCGa
Alignments
lowQualScore : 11111111111111
lowQualScore : 1111 1111 3333333333333333 1111 1111 111 222 1111 111 1 1111111 11 111111 2222222222222222 11111 1111 2222 2222222 333333333 11 111111 111111 11 22222 1111 33333333333333 33333333 111 1 11 1 111 3333333 11 222 11111111111111
lowQualScore : 1 7777 66 66 666 5 5 0 0 5 0000 555 1111111111111111 0000 4 99 5 5 888 888 6 5 77 5 5 5 1 5 9999 000 5 333 5 7777 0 8 8 8 111 99 99 6 99 4 4 5 5 1 1 77 8888888 77 77 5 77 33 5 66 5 5 666 66 5 66 5 66 999999 5 5 66 5 5 5 5 5 66 4 4 66 4 4 4 1 4 8 4 4 4 1 777 55 4 5 0 5 5 888 66 1111111111111111 55555 5 8 0 66 5 0 66 5 77 0000 777 5 0000 1111111 99 6 6 6 1 6 000000000 55 1 888 6 6 99 5 5 5 000000 5 77 0 77 5 0 4 7 777777 44 5 5 44444 5 4444 99999999999999 99 6 22222222 444 8 8 0 11 0 2 1 777 33 7 1 1 55 4 1111111 4 2 88 2 2 111 0 77777777777777
lowQualScore : . .... .. .. ... . . . . . .... ... ................ .... . .. . . ... ... . . .. . . . . . .... ... . ... . .... . . . . ... .. .. . .. . . . . . . .. ....... .. .. . .. .. . .. . . ... .. . .. . .. ...... . . .. . . . . . .. . . .. . . . . . . . . . . ... .. . . . . . ... .. ................ ..... . . . .. . . .. . .. .... ... . .... ....... .. . . . . . ......... .. . ... . . .. . . . ...... . .. . .. . . . . ...... .. . . ..... . .... .............. .. . ........ ... . . . .. . . . ... .. . . . .. . ....... . . .. . . ... . ..............
lowQualScore : 4 9999 11 11 222 0 0 1 1 0 6666 888 0000000000000000 6666 4 22 0 0 888 888 7 7 99 0 0 0 0 0 3333 000 7 111 7 3333 8 0 0 0 777 22 22 7 22 3 3 7 7 7 4 99 6666666 99 99 7 99 66 0 99 0 0 000 99 0 99 0 99 444444 0 0 99 0 0 0 0 0 99 4 4 11 4 4 4 0 4 9 4 4 4 0 000 55 4 0 2 0 0 888 99 6666666666666666 88888 0 1 4 99 0 2 99 0 99 1111 333 7 8888 7777777 22 7 7 7 7 7 777777777 88 0 777 7 7 22 7 7 7 111111 7 99 1 99 7 1 3 3 555555 55 7 0 33333 7 2222 22222222222222 22 7 00000000 000 0 0 0 00 0 5 0 555 55 3 0 0 00 0 0000000 0 5 55 5 5 000 7 55555555555555
consensus : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C-T------TTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
Reference ( family-1319 ) : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C-N------TTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-NCG-TTGTGCGAGTCNATCGCA---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATNGGANATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGC
gi|1 : AAAATTGATGACTAGATGGGTTTC--A-TCACA--AT---T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-TGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTTAA-TAT--TTTAC---A-CGGAAAATA---ATTTTA-GTAACTCGTACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AAA--AA--AT-TACGGG--A--TG-ACGG--CATGT-GGCTGAAT-AAGTTC--T-G--A-AC--GC------TTATT-CCAA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--C-T-ATAAA-GTATTTCT-C-TGAAA-TA-CATA-AATTGCACTTT---TT--GGAAATGTTCG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATT-----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTCTATC--TTTTA---ATGT-T-CAT-ATGAA----CTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT--------GT--GGTTGGCAT-G-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACCTTTGCCAAATAAAC--AA--TTCCGT-GAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGTA-C-G------TTTATTCAA---CGG-TCCGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGATGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAACTGGGCGTAGAACGTTTCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCAAGTTTGTTTTTACGTTACTATCATATGGAGG-------GTTGAATCATGTGATGTTGTGCGAACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTTGTTGTATGCTAGCTTGTATT--TAGCCGCTTTCATCGACCGCTTTTTGGTATATGCCAGCAGCTTTGATGAA---TTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGAC
gi|10 : AAATTTGCTGA-TAGATGGATTTC--AATCACACAATA--T-C-ATTAATTTCTCTAAC-AGC-------G-TAAGG----GGGACAT-TCCCTCCCA-----------C-T--CGTCAGG----AGAAT-AATTGA-C-ATTCTAT---AATACTGTA-A--CG-AAAAACA-CTACACGAA-CTGAG-TAg
gi|11 : cctatatattCATGGTTA-CA-CTCAGGA-CTGGGT--AAAT-------AGA--AT--TT-TACGGG--A--AT-ACGG--CGAGT-G-CTGA-C-AAAATC--T-G--A-AA--GC------TTATT-C-AA--TG-AAG-GTT-TTTTCGG-GAT--G-GC-AAA--T-C-ATAAA-GAATTTCT-C-TGCAA-TA-CATA-AGTTACATTTG---TT--TGAAATGTTTG-cagagtttcac
gi|12 : aag-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C-ACGATTTTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-ACG-TTGTGC-AGTCAATCGCAAATTTTTGCATAAGTG
gi|13 : ttATTGATGGCTAGATGGG--TCA-A-TCACA--ATA--T---ATGTTTTCCTCT--C-ATCC---TTCG-TAAGA----GGATTG----CCCCTCA-----------CGT--CGTCTAG----A-AAT-AT-GAA-C-ATC---T---AATA
gi|14 : T-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--G-ATTGACTATAACTTTTGCCAAATAAAC--AA--TTCCG-TGGGCGCGACATTCGCCTTTAAGCGGGCA-TTG-
gi|15 : TTAATGACTAGATGGGTTTCCAA-TCACA--ATA--TGT-ATT-GTTTCTCTA-C-AGCCTGTTTCGTTAAGA----GGGATGTA-CCCCCTCA-----------C-T--CGTCAAG----GAAAT-
gi|16 : AAT-GG-CGA-C-ATC---T---AATAC-ATGCA--CG-AAAAACACCTACACG-A-CTGAG-TACAGGTTAC---A-CAGAAAATACTGATTGTG-GTAAC----ACAATAGT
gi|17 : ACA--ATA--G-C-ATTTATTTCTCTA-C-AGACTGTTTTG-TAAGA----GGGATAAATCCCCCTAA-----------T-T--CGTAAGG----AGAAA-AA-TGA-C-ATC---T---AA
gi|18 : ---TTTGGCAT--GTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATAAGAAATAGAAC
gi|19 : -A--CGAAACA-CACCAACACG-A-CTGAG-TACAGGTTAC---A-CAAAAAATACAGGTTCTA-GTAACa
gi|2 : AAATTGATGAC-AGATGGGT--C--A-ACACA--ATA--T-CGATTTGTTTCTCTA-C-AGTCTGTT-CG--AAGA----GG-ATGTATCCCC-TCA-------------T--CGTCAGG----AGAA--GA-TGA-CCATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-AACTTAA-TAT--TTTAC---A-CGGAAAA-AT-AATTTTA--TAACTCGTACAATAGT-CAA-TGG-CTC-TAATAAA---CTCGTAC--ATTC--GTTGTT-GA--CCATGTTCAACA-C-CAGGAACTGGGT--AAAT-------AAA--AA--TT-TACGG---A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--T-G--A-AC--GC-------TATT-C-AA--TG-AAG-A-T-TTTTCGG-GATTGG-GC-AAA--T-T-ATAAA-GTATTTCTGC-TGAGATTA-CA-A-AGTTGCATTTT---TT--GGAAATGTTTGAAGT-TAGA-TGTA---TG-T--TTT-----CCC---CCAAAAAATTT----CCCACCATGATTTT--T-AATTCAA--TATCTTTTATC--TTTT-----TGT-C-CAT-TTGAA----TTTGCTGAG-------CTCAAGGTGGCG-TTTTTTTTT-G-TGGGA-TACGGAA-TGAATGGGT-------TGT--GGTTGG-ATAA-TCTAGATTTG-AACTCGGGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---TCTGTC--CAT--C-ATTGGCTATAAC-TTTGCCAAATAAACCAGA--TTCCGTTGAGCGCGACATTCGCCGTTTAGCGGGCA-TTG-GT-----CATTT----ATT--------------CCGGCAAT--TGCA-CTT------TTTTTTCAT---CGGTTCTGGGG-CACTTac
gi|20 : ataatttctagagtggctcaacgtgatctcacggagctatatcATTGATGACTGGATGGGTTTCA-A-TCACA--ATA--T-C-ATTTGTTT
gi|21 : tTCTTTGTCCGATGAAATTGATGACAATCG
gi|3 : -GC-AAA--T-T-ATAAA-GCATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TT-------CC---CC--AAAATTT----CCCT-CATGATTTT--G-TAATCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-A-TGGGACTACGGAA-TGAATGGGTGTGGAACTGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCA
gi|3 : CA-TTG-GCTATAAC-TTTTGCCATT--------------CCGGCAAT--TGCA-C-T------TTTTTTCAT---CGG-TCTGAGA-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCCATCGCA---TTTTGCATAGATGGCATAC-------------TTTAATGGTGTTTCTGTTGATAATTGGACATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGCttccggcaattgcactttttttcatcggtctgagacacttgtttgatagaagcgttgtgcgagtccatcgcattttgcatagatggcatactttaatggtgtttctgttgataattggacatagaacgtggcccatcgggaaacactcatctatgatcttaaggaactgtttgccttagtttgtttttacgttactatcatatggggatgggggtgttgaaccatgtgatgttgcgcgtacgatttcgtctgctgtttgtcctagtttttgccgattcgtcgtatgttagcttctatttatagccgctttcctcgagcgctttttggtatatgccagcagctttgacgaattcttctttgtccgatgaagttgatgacaatcggtggttaagctttaattatggaaggc
gi|4 : gcaaattataaagcatttctctgaaatacataagttgcactttttggaaatgtttgagtacgatgatgttttccccaaaatttccctcatgattttgtaatcaatatttttatcttttaatgtccatatgaatttgctgagctcggtggcgttcttttttatgggactacggaatgaatgggtgtggaactgtggttggcatatctagatttgaactcggtgtctgctagtcccacatagctttgttcttgtccatATTGATGACTAGATGGGTTTC--AATCACA--ATA--T-C-ATTTGTT-CTCTA-C-AGCCTGTTTC--TAAGA----GGGATGTTTCCCCCTCA-----------C----CGTCAGG----AGAAT-AT-GGC-C-ATC---T---AATAT-ACA-A--CGAAAAAGCACCTGCACG-A-CTTTGATAT--TTTAC---ATCGGAAAAT---GATTTTA-GTAACTCG-ACAATAGTTCAA-TGGGCTC-TAAGTAA---CTCGTAC--ATTG--GTTGTTTGA--CCATGGTTA-CA-TACAGGA-CTGGGT--GAAT-------AAA--AA--TT-TACGGA--A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--TGG--A-AC--GT------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-TAATAAA-GTATTTCT-CTTGAGA-TA-CATA-AGTTGCACTTT---TTTGGAAAATGTTCG-AGT-ACGATTG-A---TGTT--TT-------CC---CC--AAAATTTC---CCCA-CATGA--TT--G-TAATCAA--TA--TTTTATCCTTTTTA---ATGTCC-CAT-ATGAAT---TTTGCTAAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGG--------TGTG-GGTTGGCAT-ATTCTAGATTTGAAACTC-GGTAGTTTTGCT-AGTCCCA-CATAGCTTTTGTTTCC---T-TGTC--C-T--CAATTGGCTTTAACTTTTG-CAAATAAACA-AA--TTCCGTTGAGCGCGACTTCCGCCGTTAAGCGGGCA-TTGCGT-----C-T
gi|5 : --A-TCACA--ATAAGT-C-ATTTGTTTCTCTA-CGAGCCTGTTTCG-TAAGATCGAGAGATGTACCCCCTTCAAGAGTTTTTCAC-TAGCGTAAGGGTGGAGAATCAA-CGAAC-ATC---TTATAACAC-ACA-AAACAAAGAAAGAC-TGCACG-A-CTTAA-TAT--TCTACTACA-CAGAAAATAC--ATTTTACGTAAGTCG-ACAATAGTTCAACTGG-CTCGTAAGTAAACTTTCGTAC--ATTG--GTTGTT-GG--C-ATG-TTA-CAACACAGGA-CTAGGT--AAATTTGTAAAAAACCAA--TTATACGGG--AAATG-ACGG--CAAGT-G--TGA-CTAAGT-C--T-AGAA-AC--GCG-----TTATTTC-AAAGTGTAAGTA-T-TTTATTG-GAT--GCGCTAAA--TGT-ATAAAAGTATTTCT-C-TGAGA-TA-CATA-AGTTG-GCTTT---TT--GGAAATGTTTG-AGTTACGA-TG-A---TGTTTATTT-----CTCCTTCC--AAAATTT----CCCA-C-TG-TTTT--G-T----AA--TAC-TTTTA--------G---ATGT-CGCATAATGAATAGTTCTGCTGAGGCAAAAACTC--GATGGCGTTTCTTTTAT-GTTGGGATTACGGAATTGAATTGGC-------TGTTGGGTTGGCAT-
gi|6 : gaaatgataaggatgttcttaca-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-GC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATGAA-GAATTTCT-C-TAAAA-AAACAT---GTTACACTTT---TG--TGAAATGTTTG-AGT-ATGA-TG-A---TGTT---------------------------------------GATAAT--G-TAGTCAG--TAT-TTTTATC--TTCTA---ATGT-C-CAT-ATGGA----TTTGCTTAG-------CTC--GGTGGCT-TTCTTTTTTTG-TGGGATTACGGAA-TGAATGGGT--------GT--AGTTGGTAT-A-TCTAGATTTG-AACTT-GGTG--TCTGCT-AGACCCA-CATAGC-TTTGTT--C---C-TGTC--CGT--C-ATTGGCTATAACTTTTGCTAAAT------------------AGTGCGACATTCACCGTTAAGCGGGCC-TTG-AT-----C-TTT----ATT--------------CCGGCAAT--TGCA-
gi|7 : tAAAAATACCTACACG-A-TTGAG-TA-------C---A-CGAAACATACTGGTTCTA-GTAAC----ATAATAGTT------G-CT---AAGCA--------------------TTGTT--A--C-------A-CA-CATATGA-ATGTGT--AACT-------AGA--AA--TT-TGCGGG--AA-TG-GCGG--TAAGT-A-CCGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--AG-ATG-A-T-TTTTCAG-GAT--G-AC-AAA--T-T-ATAAA-GAATTTCT-C-TAGAA-TG-CATAGGGTTTTTTTTT---TT--GG
gi|7 : tacatcaccccgTTT---TT----ACATATTTG-AGT-ATGA-TG-A---CATT--TTT-----CTT-------AAAATTT----CCCA-CGTGATTTT--G-TAGTCAA--TAT-CTTTATT--ACTGAACTATGT-A-CAT-ATtttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|8 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatactggttctagtaacataatagttgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgtttttttttttAA---CTCGTACCAAGCGTAGTTGGT-GAGCCCATGGTTA-CA-AACAGGAACTGAGTCTAAAT-------AGA--AAATTT-TACGGGGAA--TGGACAGGTCAAGTAG-CTGA-C-TAATTCCCT-G--ATATCAGCCCCATTTTATT-C-AA--TG-AAG-G-CCTTTTCGGCGAT--G-GC-AAACAT-T-ATAAA-GAATTTCT-CTTGAAA-TA-AATA-AGTTAC-CTTTCTGTT--GAAAGTG-GTG-AA----GA-TG-AGATTGTT--TTTTACTACCC---CC--ACGATTTCATCCCCA-C-TGTTTTTTAGTTAGTCAAGCTAT-TTTataccacttggctgtg
gi|9 : ctcgttaacacaataggctcccgttaagggggcaTTG-AACTC-G-TG--TTTGCTTAGTCCCTTCAT-GC-TTTGTT--TCTTT-TGTCAGCATTTC-AT-GGCTATAACTTTTG-CAAAT-AAC--AAATTTCCG-TGAGCGTG----TCGCCGTTAAGACGGCATTTG-GTTAC--C-TTT----ATTATTATTGTATCTGCTCGGCAATTGTGCAGC-T------TGTTTTCATAAGCGG-TCTGGGGAGACTTGTTTGATACGAATTCGTTTGTGCGAGg
Alignments
lowQualScore : 1111 1111 3333333333333333 1111 1111 111 222 1111 111 1 1111111 11 111111 2222222222222222 11111 1111 2222 2222222 333333333 11 111111 111111 11 22222 1111 33333333333333 333333 111 1 11 1 1111 3333333 11 222 55555555555555
lowQualScore : 1 7777 66 66 666 5 5 0 0 5 0000 555 1111111111111111 0000 4 99 5 5 888 888 6 5 77 5 5 5 1 5 9999 000 5 333 5 7777 0 8 8 8 111 99 99 6 99 4 4 5 5 1 1 77 8888888 77 77 5 77 33 5 66 5 5 666 66 5 66 5 66 999999 5 5 66 5 5 5 5 5 66 4 4 66 4 4 4 1 4 8 4 4 4 1 777 55 4 5 0 5 5 888 66 1111111111111111 55555 5 8 0 66 5 0 66 5 77 0000 777 5 0000 1111111 99 6 6 6 1 6 000000000 55 1 888 6 6 99 5 5 5 000000 5 77 0 77 5 0 4 7 777777 44 5 5 44444 5 4444 99999999999999 99 6 111111 444 8 8 0 00 0 2 8888 33 7 0 22 1 1111111 1 1 88 1 1 111 11111111111111
lowQualScore : . .... .. .. ... . . . . . .... ... ................ .... . .. . . ... ... . . .. . . . . . .... ... . ... . .... . . . . ... .. .. . .. . . . . . . .. ....... .. .. . .. .. . .. . . ... .. . .. . .. ...... . . .. . . . . . .. . . .. . . . . . . . . . . ... .. . . . . . ... .. ................ ..... . . . .. . . .. . .. .... ... . .... ....... .. . . . . . ......... .. . ... . . .. . . . ...... . .. . .. . . . . ...... .. . . ..... . .... .............. .. . ...... ... . . . .. . . .... .. . . .. . ....... . . .. . . ... ..............
lowQualScore : 4 9999 11 11 222 0 0 1 1 0 6666 888 0000000000000000 6666 4 22 0 0 888 888 7 7 99 0 0 0 0 0 3333 000 7 111 7 3333 8 0 0 0 777 22 22 7 22 3 3 7 7 7 4 99 6666666 99 99 7 99 66 0 99 0 0 000 99 0 99 0 99 444444 0 0 99 0 0 0 0 0 99 4 4 11 4 4 4 0 4 9 4 4 4 0 000 55 4 0 2 0 0 888 99 6666666666666666 88888 0 1 4 99 0 2 99 0 99 1111 333 7 8888 7777777 22 7 7 7 7 7 777777777 88 0 777 7 7 22 7 7 7 111111 7 99 1 99 7 1 3 3 555555 55 7 0 33333 7 2222 22222222222222 22 7 000000 000 0 0 0 22 0 5 2222 55 3 7 00 0 0000000 0 0 55 0 0 000 55555555555555
consensus : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
Reference ( family-1319 ) : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
gi|1 : AAAATTGATGACTAGATGGGTTTC--A-TCACA--AT---T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-TGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTTAA-TAT--TTTAC---A-CGGAAAATA---ATTTTA-GTAACTCGTACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AAA--AA--AT-TACGGG--A--TG-ACGG--CATGT-GGCTGAAT-AAGTTC--T-G--A-AC--GC------TTATT-CCAA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--C-T-ATAAA-GTATTTCT-C-TGAAA-TA-CATA-AATTGCACTTT---TT--GGAAATGTTCG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATT-----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTCTATC--TTTTA---ATGT-T-CAT-ATGAA----CTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT--------GT--GGTTGGCAT-G-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACCTTTGCCAAATAAAC--AA--TTCCGT-GAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGTA-C------GTTTATTCAA---CGG-TCCGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGATGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAACTGGGCGTAGAACGTTTCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCAAGTTTGTTTTTACGTTACTATCATATGGAGG-------GTTGAATCATGTGATGTTGTGCGAACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTTGTTGTATGCTAGCTTGTATT--TAGCCGCTTTCATCGACCGCTTTTTGGTATATGCCAGCAGCTTTGATGAA---TTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGAC
gi|10 : AAATTTGCTGA-TAGATGGATTTC--AATCACACAATA--T-C-ATTAATTTCTCTAAC-AGC-------G-TAAGG----GGGACAT-TCCCTCCCA-----------C-T--CGTCAGG----AGAAT-AATTGA-C-ATTCTAT---AATACTGTA-A--CG-AAAAACA-CTACACGAA-CTGAG-TAg
gi|11 : cctatatattCATGGTTA-CA-CTCAGGA-CTGGGT--AAAT-------AGA--AT--TT-TACGGG--A--AT-ACGG--CGAGT-G-CTGA-C-AAAATC--T-G--A-AA--GC------TTATT-C-AA--TG-AAG-GTT-TTTTCGG-GAT--G-GC-AAA--T-C-ATAAA-GAATTTCT-C-TGCAA-TA-CATA-AGTTACATTTG---TT--TGAAATGTTTG-cagagtttcac
gi|12 : aag-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-CACGATTTTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-ACG-TTGTGC-AGTCAATCGCAAATTTTTGCATAAGTG
gi|13 : ttATTGATGGCTAGATGGG--TCA-A-TCACA--ATA--T---ATGTTTTCCTCT--C-ATCC---TTCG-TAAGA----GGATTG----CCCCTCA-----------CGT--CGTCTAG----A-AAT-AT-GAA-C-ATC---T---AATA
gi|14 : T-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--G-ATTGACTATAACTTTTGCCAAATAAAC--AA--TTCCG-TGGGCGCGACATTCGCCTTTAAGCGGGCA-TTG-
gi|15 : TTAATGACTAGATGGGTTTCCAA-TCACA--ATA--TGT-ATT-GTTTCTCTA-C-AGCCTGTTTCGTTAAGA----GGGATGTA-CCCCCTCA-----------C-T--CGTCAAG----GAAAT-
gi|16 : AAT-GG-CGA-C-ATC---T---AATAC-ATGCA--CG-AAAAACACCTACACG-A-CTGAG-TACAGGTTAC---A-CAGAAAATACTGATTGTG-GTAAC----ACAATAGT
gi|17 : ACA--ATA--G-C-ATTTATTTCTCTA-C-AGACTGTTTTG-TAAGA----GGGATAAATCCCCCTAA-----------T-T--CGTAAGG----AGAAA-AA-TGA-C-ATC---T---AA
gi|18 : ---TTTGGCAT--GTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATAAGAAATAGAAC
gi|19 : -A--CGAAACA-CACCAACACG-A-CTGAG-TACAGGTTAC---A-CAAAAAATACAGGTTCTA-GTAACa
gi|2 : AAATTGATGAC-AGATGGGT--C--A-ACACA--ATA--T-CGATTTGTTTCTCTA-C-AGTCTGTT-CG--AAGA----GG-ATGTATCCCC-TCA-------------T--CGTCAGG----AGAA--GA-TGA-CCATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-AACTTAA-TAT--TTTAC---A-CGGAAAA-AT-AATTTTA--TAACTCGTACAATAGT-CAA-TGG-CTC-TAATAAA---CTCGTAC--ATTC--GTTGTT-GA--CCATGTTCAACA-C-CAGGAACTGGGT--AAAT-------AAA--AA--TT-TACGG---A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--T-G--A-AC--GC-------TATT-C-AA--TG-AAG-A-T-TTTTCGG-GATTGG-GC-AAA--T-T-ATAAA-GTATTTCTGC-TGAGATTA-CA-A-AGTTGCATTTT---TT--GGAAATGTTTGAAGT-TAGA-TGTA---TG-T--TTT-----CCC---CCAAAAAATTT----CCCACCATGATTTT--T-AATTCAA--TATCTTTTATC--TTTT-----TGT-C-CAT-TTGAA----TTTGCTGAG-------CTCAAGGTGGCG-TTTTTTTTT-G-TGGGA-TACGGAA-TGAATGGGT-------TGT--GGTTGG-ATAA-TCTAGATTTG-AACTCGGGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---TCTGTC--CAT--C-ATTGGCTATAAC-TTTGCCAAATAAACCAGA--TTCCGTTGAGCGCGACATTCGCCGTTTAGCGGGCA-TTG-GT-----CATTT----ATT--------------CCGGCAAT--TGCA-CT-----TTTTTTTCAT---CGGTTCTGGGG-CACTTac
gi|20 : ataatttctagagtggctcaacgtgatctcacggagctatatcATTGATGACTGGATGGGTTTCA-A-TCACA--ATA--T-C-ATTTGTTT
gi|21 : tTCTTTGTCCGATGAAATTGATGACAATCG
gi|3 : -GC-AAA--T-T-ATAAA-GCATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TT-------CC---CC--AAAATTT----CCCT-CATGATTTT--G-TAATCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-A-TGGGACTACGGAA-TGAATGGGTGTGGAACTGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCA
gi|3 : CA-TTG-GCTATAAC-TTTTGCCATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGAGA-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCCATCGCA---TTTTGCATAGATGGCATAC-------------TTTAATGGTGTTTCTGTTGATAATTGGACATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGCttccggcaattgcactttttttcatcggtctgagacacttgtttgatagaagcgttgtgcgagtccatcgcattttgcatagatggcatactttaatggtgtttctgttgataattggacatagaacgtggcccatcgggaaacactcatctatgatcttaaggaactgtttgccttagtttgtttttacgttactatcatatggggatgggggtgttgaaccatgtgatgttgcgcgtacgatttcgtctgctgtttgtcctagtttttgccgattcgtcgtatgttagcttctatttatagccgctttcctcgagcgctttttggtatatgccagcagctttgacgaattcttctttgtccgatgaagttgatgacaatcggtggttaagctttaattatggaaggc
gi|4 : gcaaattataaagcatttctctgaaatacataagttgcactttttggaaatgtttgagtacgatgatgttttccccaaaatttccctcatgattttgtaatcaatatttttatcttttaatgtccatatgaatttgctgagctcggtggcgttcttttttatgggactacggaatgaatgggtgtggaactgtggttggcatatctagatttgaactcggtgtctgctagtcccacatagctttgttcttgtccatATTGATGACTAGATGGGTTTC--AATCACA--ATA--T-C-ATTTGTT-CTCTA-C-AGCCTGTTTC--TAAGA----GGGATGTTTCCCCCTCA-----------C----CGTCAGG----AGAAT-AT-GGC-C-ATC---T---AATAT-ACA-A--CGAAAAAGCACCTGCACG-A-CTTTGATAT--TTTAC---ATCGGAAAAT---GATTTTA-GTAACTCG-ACAATAGTTCAA-TGGGCTC-TAAGTAA---CTCGTAC--ATTG--GTTGTTTGA--CCATGGTTA-CA-TACAGGA-CTGGGT--GAAT-------AAA--AA--TT-TACGGA--A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--TGG--A-AC--GT------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-TAATAAA-GTATTTCT-CTTGAGA-TA-CATA-AGTTGCACTTT---TTTGGAAAATGTTCG-AGT-ACGATTG-A---TGTT--TT-------CC---CC--AAAATTTC---CCCA-CATGA--TT--G-TAATCAA--TA--TTTTATCCTTTTTA---ATGTCC-CAT-ATGAAT---TTTGCTAAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGG--------TGTG-GGTTGGCAT-ATTCTAGATTTGAAACTC-GGTAGTTTTGCT-AGTCCCA-CATAGCTTTTGTTTCC---T-TGTC--C-T--CAATTGGCTTTAACTTTTG-CAAATAAACA-AA--TTCCGTTGAGCGCGACTTCCGCCGTTAAGCGGGCA-TTGCGT-----C-T
gi|5 : --A-TCACA--ATAAGT-C-ATTTGTTTCTCTA-CGAGCCTGTTTCG-TAAGATCGAGAGATGTACCCCCTTCAAGAGTTTTTCAC-TAGCGTAAGGGTGGAGAATCAA-CGAAC-ATC---TTATAACAC-ACA-AAACAAAGAAAGAC-TGCACG-A-CTTAA-TAT--TCTACTACA-CAGAAAATAC--ATTTTACGTAAGTCG-ACAATAGTTCAACTGG-CTCGTAAGTAAACTTTCGTAC--ATTG--GTTGTT-GG--C-ATG-TTA-CAACACAGGA-CTAGGT--AAATTTGTAAAAAACCAA--TTATACGGG--AAATG-ACGG--CAAGT-G--TGA-CTAAGT-C--T-AGAA-AC--GCG-----TTATTTC-AAAGTGTAAGTA-T-TTTATTG-GAT--GCGCTAAA--TGT-ATAAAAGTATTTCT-C-TGAGA-TA-CATA-AGTTG-GCTTT---TT--GGAAATGTTTG-AGTTACGA-TG-A---TGTTTATTT-----CTCCTTCC--AAAATTT----CCCA-C-TG-TTTT--G-T----AA--TAC-TTTTA--------G---ATGT-CGCATAATGAATAGTTCTGCTGAGGCAAAAACTC--GATGGCGTTTCTTTTAT-GTTGGGATTACGGAATTGAATTGGC-------TGTTGGGTTGGCAT-
gi|6 : gaaatgataaggatgttcttaca-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-GC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATGAA-GAATTTCT-C-TAAAA-AAACAT---GTTACACTTT---TG--TGAAATGTTTG-AGT-ATGA-TG-A---TGTT---------------------------------------GATAAT--G-TAGTCAG--TAT-TTTTATC--TTCTA---ATGT-C-CAT-ATGGA----TTTGCTTAG-------CTC--GGTGGCT-TTCTTTTTTTG-TGGGATTACGGAA-TGAATGGGT--------GT--AGTTGGTAT-A-TCTAGATTTG-AACTT-GGTG--TCTGCT-AGACCCA-CATAGC-TTTGTT--C---C-TGTC--CGT--C-ATTGGCTATAACTTTTGCTAAAT------------------AGTGCGACATTCACCGTTAAGCGGGCC-TTG-AT-----C-TTT----ATT--------------CCGGCAAT--TGCA-
gi|7 : tAAAAATACCTACACG-A-TTGAG-TA-------C---A-CGAAACATACTGGTTCTA-GTAAC----ATAATAGTT------G-CT---AAGCA--------------------TTGTT--A--C-------A-CA-CATATGA-ATGTGT--AACT-------AGA--AA--TT-TGCGGG--AA-TG-GCGG--TAAGT-A-CCGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--AG-ATG-A-T-TTTTCAG-GAT--G-AC-AAA--T-T-ATAAA-GAATTTCT-C-TAGAA-TG-CATAGGGTTTTTTTTT---TT--GG
gi|7 : tacatcaccccgTTT---TT----ACATATTTG-AGT-ATGA-TG-A---CATT--TTT-----CTT-------AAAATTT----CCCA-CGTGATTTT--G-TAGTCAA--TAT-CTTTATT--ACTGAACTATGT-A-CAT-ATtttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|8 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatactggttctagtaacataatagttgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgtttttttttttAA---CTCGTACCAAGCGTAGTTGGT-GAGCCCATGGTTA-CA-AACAGGAACTGAGTCTAAAT-------AGA--AAATTT-TACGGGGAA--TGGACAGGTCAAGTAG-CTGA-C-TAATTCCCT-G--ATATCAGCCCCATTTTATT-C-AA--TG-AAG-G-CCTTTTCGGCGAT--G-GC-AAACAT-T-ATAAA-GAATTTCT-CTTGAAA-TA-AATA-AGTTAC-CTTTCTGTT--GAAAGTG-GTG-AA----GA-TG-AGATTGTT--TTTTACTACCC---CC--ACGATTTCATCCCCA-C-TGTTTTTTAGTTAGTCAAGCTAT-TTTataccacttggctgtg
gi|9 : ctcgttaacacaataggctcccgttaagggggcaTTG-AACTC-G-TG--TTTGCTTAGTCCCTTCAT-GC-TTTGTT--TCTTT-TGTCAGCATTTC-AT-GGCTATAACTTTTG-CAAAT-AAC--AAATTTCCG-TGAGCGTG----TCGCCGTTAAGACGGCATTTG-GTTAC--C-TTT----ATTATTATTGTATCTGCTCGGCAATTGTGCAGC------TTGTTTTCATAAGCGG-TCTGGGGAGACTTGTTTGATACGAATTCGTTTGTGCGAGg
Alignments
lowQualScore : 1111 1111 3333333333333333 1111 1111 111 222 1111 111 1 1111111 11 111111 2222222222222222 11111 1111 2222 2222222 333333333 11 111111 111111 11 22222 1111 33333333333333 333333 111 1 11 1 1111 3333333 11 222 55555555555555
lowQualScore : 1 7777 66 66 666 5 5 0 0 5 0000 555 1111111111111111 0000 4 99 5 5 888 888 6 5 77 5 5 5 1 5 9999 000 5 333 5 7777 0 8 8 8 111 99 99 6 99 4 4 5 5 1 1 77 8888888 77 77 5 77 33 5 66 5 5 666 66 5 66 5 66 999999 5 5 66 5 5 5 5 5 66 4 4 66 4 4 4 1 4 8 4 4 4 1 777 55 4 5 0 5 5 888 66 1111111111111111 55555 5 8 0 66 5 0 66 5 77 0000 777 5 0000 1111111 99 6 6 6 1 6 000000000 55 1 888 6 6 99 5 5 5 000000 5 77 0 77 5 0 4 7 777777 44 5 5 44444 5 4444 99999999999999 99 6 111111 444 8 8 0 00 0 2 8888 33 7 0 22 1 1111111 1 1 88 1 1 111 11111111111111
lowQualScore : . .... .. .. ... . . . . . .... ... ................ .... . .. . . ... ... . . .. . . . . . .... ... . ... . .... . . . . ... .. .. . .. . . . . . . .. ....... .. .. . .. .. . .. . . ... .. . .. . .. ...... . . .. . . . . . .. . . .. . . . . . . . . . . ... .. . . . . . ... .. ................ ..... . . . .. . . .. . .. .... ... . .... ....... .. . . . . . ......... .. . ... . . .. . . . ...... . .. . .. . . . . ...... .. . . ..... . .... .............. .. . ...... ... . . . .. . . .... .. . . .. . ....... . . .. . . ... ..............
lowQualScore : 4 9999 11 11 222 0 0 1 1 0 6666 888 0000000000000000 6666 4 22 0 0 888 888 7 7 99 0 0 0 0 0 3333 000 7 111 7 3333 8 0 0 0 777 22 22 7 22 3 3 7 7 7 4 99 6666666 99 99 7 99 66 0 99 0 0 000 99 0 99 0 99 444444 0 0 99 0 0 0 0 0 99 4 4 11 4 4 4 0 4 9 4 4 4 0 000 55 4 0 2 0 0 888 99 6666666666666666 88888 0 1 4 99 0 2 99 0 99 1111 333 7 8888 7777777 22 7 7 7 7 7 777777777 88 0 777 7 7 22 7 7 7 111111 7 99 1 99 7 1 3 3 555555 55 7 0 33333 7 2222 22222222222222 22 7 000000 000 0 0 0 22 0 5 2222 55 3 7 00 0 0000000 0 0 55 0 0 000 55555555555555
consensus : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
Reference ( family-1319 ) : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
gi|1 : AAAATTGATGACTAGATGGGTTTC--A-TCACA--AT---T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-TGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTTAA-TAT--TTTAC---A-CGGAAAATA---ATTTTA-GTAACTCGTACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AAA--AA--AT-TACGGG--A--TG-ACGG--CATGT-GGCTGAAT-AAGTTC--T-G--A-AC--GC------TTATT-CCAA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--C-T-ATAAA-GTATTTCT-C-TGAAA-TA-CATA-AATTGCACTTT---TT--GGAAATGTTCG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATT-----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTCTATC--TTTTA---ATGT-T-CAT-ATGAA----CTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT--------GT--GGTTGGCAT-G-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACCTTTGCCAAATAAAC--AA--TTCCGT-GAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGTA-C------GTTTATTCAA---CGG-TCCGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGATGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAACTGGGCGTAGAACGTTTCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCAAGTTTGTTTTTACGTTACTATCATATGGAGG-------GTTGAATCATGTGATGTTGTGCGAACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTTGTTGTATGCTAGCTTGTATT--TAGCCGCTTTCATCGACCGCTTTTTGGTATATGCCAGCAGCTTTGATGAA---TTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGAC
gi|10 : AAATTTGCTGA-TAGATGGATTTC--AATCACACAATA--T-C-ATTAATTTCTCTAAC-AGC-------G-TAAGG----GGGACAT-TCCCTCCCA-----------C-T--CGTCAGG----AGAAT-AATTGA-C-ATTCTAT---AATACTGTA-A--CG-AAAAACA-CTACACGAA-CTGAG-TAg
gi|11 : cctatatattCATGGTTA-CA-CTCAGGA-CTGGGT--AAAT-------AGA--AT--TT-TACGGG--A--AT-ACGG--CGAGT-G-CTGA-C-AAAATC--T-G--A-AA--GC------TTATT-C-AA--TG-AAG-GTT-TTTTCGG-GAT--G-GC-AAA--T-C-ATAAA-GAATTTCT-C-TGCAA-TA-CATA-AGTTACATTTG---TT--TGAAATGTTTG-cagagtttcac
gi|12 : aag-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-CACGATTTTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-ACG-TTGTGC-AGTCAATCGCAAATTTTTGCATAAGTG
gi|13 : ttATTGATGGCTAGATGGG--TCA-A-TCACA--ATA--T---ATGTTTTCCTCT--C-ATCC---TTCG-TAAGA----GGATTG----CCCCTCA-----------CGT--CGTCTAG----A-AAT-AT-GAA-C-ATC---T---AATA
gi|14 : T-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--G-ATTGACTATAACTTTTGCCAAATAAAC--AA--TTCCG-TGGGCGCGACATTCGCCTTTAAGCGGGCA-TTG-
gi|15 : TTAATGACTAGATGGGTTTCCAA-TCACA--ATA--TGT-ATT-GTTTCTCTA-C-AGCCTGTTTCGTTAAGA----GGGATGTA-CCCCCTCA-----------C-T--CGTCAAG----GAAAT-
gi|16 : AAT-GG-CGA-C-ATC---T---AATAC-ATGCA--CG-AAAAACACCTACACG-A-CTGAG-TACAGGTTAC---A-CAGAAAATACTGATTGTG-GTAAC----ACAATAGT
gi|17 : ACA--ATA--G-C-ATTTATTTCTCTA-C-AGACTGTTTTG-TAAGA----GGGATAAATCCCCCTAA-----------T-T--CGTAAGG----AGAAA-AA-TGA-C-ATC---T---AA
gi|18 : ---TTTGGCAT--GTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATAAGAAATAGAAC
gi|19 : -A--CGAAACA-CACCAACACG-A-CTGAG-TACAGGTTAC---A-CAAAAAATACAGGTTCTA-GTAACa
gi|2 : AAATTGATGAC-AGATGGGT--C--A-ACACA--ATA--T-CGATTTGTTTCTCTA-C-AGTCTGTT-CG--AAGA----GG-ATGTATCCCC-TCA-------------T--CGTCAGG----AGAA--GA-TGA-CCATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-AACTTAA-TAT--TTTAC---A-CGGAAAA-AT-AATTTTA--TAACTCGTACAATAGT-CAA-TGG-CTC-TAATAAA---CTCGTAC--ATTC--GTTGTT-GA--CCATGTTCAACA-C-CAGGAACTGGGT--AAAT-------AAA--AA--TT-TACGG---A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--T-G--A-AC--GC-------TATT-C-AA--TG-AAG-A-T-TTTTCGG-GATTGG-GC-AAA--T-T-ATAAA-GTATTTCTGC-TGAGATTA-CA-A-AGTTGCATTTT---TT--GGAAATGTTTGAAGT-TAGA-TGTA---TG-T--TTT-----CCC---CCAAAAAATTT----CCCACCATGATTTT--T-AATTCAA--TATCTTTTATC--TTTT-----TGT-C-CAT-TTGAA----TTTGCTGAG-------CTCAAGGTGGCG-TTTTTTTTT-G-TGGGA-TACGGAA-TGAATGGGT-------TGT--GGTTGG-ATAA-TCTAGATTTG-AACTCGGGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---TCTGTC--CAT--C-ATTGGCTATAAC-TTTGCCAAATAAACCAGA--TTCCGTTGAGCGCGACATTCGCCGTTTAGCGGGCA-TTG-GT-----CATTT----ATT--------------CCGGCAAT--TGCA-CT-----TTTTTTTCAT---CGGTTCTGGGG-CACTTac
gi|20 : ataatttctagagtggctcaacgtgatctcacggagctatatcATTGATGACTGGATGGGTTTCA-A-TCACA--ATA--T-C-ATTTGTTT
gi|21 : tTCTTTGTCCGATGAAATTGATGACAATCG
gi|3 : -GC-AAA--T-T-ATAAA-GCATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TT-------CC---CC--AAAATTT----CCCT-CATGATTTT--G-TAATCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-A-TGGGACTACGGAA-TGAATGGGTGTGGAACTGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCA
gi|3 : CA-TTG-GCTATAAC-TTTTGCCATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGAGA-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCCATCGCA---TTTTGCATAGATGGCATAC-------------TTTAATGGTGTTTCTGTTGATAATTGGACATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGCttccggcaattgcactttttttcatcggtctgagacacttgtttgatagaagcgttgtgcgagtccatcgcattttgcatagatggcatactttaatggtgtttctgttgataattggacatagaacgtggcccatcgggaaacactcatctatgatcttaaggaactgtttgccttagtttgtttttacgttactatcatatggggatgggggtgttgaaccatgtgatgttgcgcgtacgatttcgtctgctgtttgtcctagtttttgccgattcgtcgtatgttagcttctatttatagccgctttcctcgagcgctttttggtatatgccagcagctttgacgaattcttctttgtccgatgaagttgatgacaatcggtggttaagctttaattatggaaggc
gi|4 : gcaaattataaagcatttctctgaaatacataagttgcactttttggaaatgtttgagtacgatgatgttttccccaaaatttccctcatgattttgtaatcaatatttttatcttttaatgtccatatgaatttgctgagctcggtggcgttcttttttatgggactacggaatgaatgggtgtggaactgtggttggcatatctagatttgaactcggtgtctgctagtcccacatagctttgttcttgtccatATTGATGACTAGATGGGTTTC--AATCACA--ATA--T-C-ATTTGTT-CTCTA-C-AGCCTGTTTC--TAAGA----GGGATGTTTCCCCCTCA-----------C----CGTCAGG----AGAAT-AT-GGC-C-ATC---T---AATAT-ACA-A--CGAAAAAGCACCTGCACG-A-CTTTGATAT--TTTAC---ATCGGAAAAT---GATTTTA-GTAACTCG-ACAATAGTTCAA-TGGGCTC-TAAGTAA---CTCGTAC--ATTG--GTTGTTTGA--CCATGGTTA-CA-TACAGGA-CTGGGT--GAAT-------AAA--AA--TT-TACGGA--A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--TGG--A-AC--GT------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-TAATAAA-GTATTTCT-CTTGAGA-TA-CATA-AGTTGCACTTT---TTTGGAAAATGTTCG-AGT-ACGATTG-A---TGTT--TT-------CC---CC--AAAATTTC---CCCA-CATGA--TT--G-TAATCAA--TA--TTTTATCCTTTTTA---ATGTCC-CAT-ATGAAT---TTTGCTAAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGG--------TGTG-GGTTGGCAT-ATTCTAGATTTGAAACTC-GGTAGTTTTGCT-AGTCCCA-CATAGCTTTTGTTTCC---T-TGTC--C-T--CAATTGGCTTTAACTTTTG-CAAATAAACA-AA--TTCCGTTGAGCGCGACTTCCGCCGTTAAGCGGGCA-TTGCGT-----C-T
gi|5 : --A-TCACA--ATAAGT-C-ATTTGTTTCTCTA-CGAGCCTGTTTCG-TAAGATCGAGAGATGTACCCCCTTCAAGAGTTTTTCAC-TAGCGTAAGGGTGGAGAATCAA-CGAAC-ATC---TTATAACAC-ACA-AAACAAAGAAAGAC-TGCACG-A-CTTAA-TAT--TCTACTACA-CAGAAAATAC--ATTTTACGTAAGTCG-ACAATAGTTCAACTGG-CTCGTAAGTAAACTTTCGTAC--ATTG--GTTGTT-GG--C-ATG-TTA-CAACACAGGA-CTAGGT--AAATTTGTAAAAAACCAA--TTATACGGG--AAATG-ACGG--CAAGT-G--TGA-CTAAGT-C--T-AGAA-AC--GCG-----TTATTTC-AAAGTGTAAGTA-T-TTTATTG-GAT--GCGCTAAA--TGT-ATAAAAGTATTTCT-C-TGAGA-TA-CATA-AGTTG-GCTTT---TT--GGAAATGTTTG-AGTTACGA-TG-A---TGTTTATTT-----CTCCTTCC--AAAATTT----CCCA-C-TG-TTTT--G-T----AA--TAC-TTTTA--------G---ATGT-CGCATAATGAATAGTTCTGCTGAGGCAAAAACTC--GATGGCGTTTCTTTTAT-GTTGGGATTACGGAATTGAATTGGC-------TGTTGGGTTGGCAT-
gi|6 : gaaatgataaggatgttcttaca-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-GC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATGAA-GAATTTCT-C-TAAAA-AAACAT---GTTACACTTT---TG--TGAAATGTTTG-AGT-ATGA-TG-A---TGTT---------------------------------------GATAAT--G-TAGTCAG--TAT-TTTTATC--TTCTA---ATGT-C-CAT-ATGGA----TTTGCTTAG-------CTC--GGTGGCT-TTCTTTTTTTG-TGGGATTACGGAA-TGAATGGGT--------GT--AGTTGGTAT-A-TCTAGATTTG-AACTT-GGTG--TCTGCT-AGACCCA-CATAGC-TTTGTT--C---C-TGTC--CGT--C-ATTGGCTATAACTTTTGCTAAAT------------------AGTGCGACATTCACCGTTAAGCGGGCC-TTG-AT-----C-TTT----ATT--------------CCGGCAAT--TGCA-
gi|7 : tAAAAATACCTACACG-A-TTGAG-TA-------C---A-CGAAACATACTGGTTCTA-GTAAC----ATAATAGTT------G-CT---AAGCA--------------------TTGTT--A--C-------A-CA-CATATGA-ATGTGT--AACT-------AGA--AA--TT-TGCGGG--AA-TG-GCGG--TAAGT-A-CCGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--AG-ATG-A-T-TTTTCAG-GAT--G-AC-AAA--T-T-ATAAA-GAATTTCT-C-TAGAA-TG-CATAGGGTTTTTTTTT---TT--GG
gi|7 : tacatcaccccgTTT---TT----ACATATTTG-AGT-ATGA-TG-A---CATT--TTT-----CTT-------AAAATTT----CCCA-CGTGATTTT--G-TAGTCAA--TAT-CTTTATT--ACTGAACTATGT-A-CAT-ATtttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|8 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatactggttctagtaacataatagttgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgtttttttttttAA---CTCGTACCAAGCGTAGTTGGT-GAGCCCATGGTTA-CA-AACAGGAACTGAGTCTAAAT-------AGA--AAATTT-TACGGGGAA--TGGACAGGTCAAGTAG-CTGA-C-TAATTCCCT-G--ATATCAGCCCCATTTTATT-C-AA--TG-AAG-G-CCTTTTCGGCGAT--G-GC-AAACAT-T-ATAAA-GAATTTCT-CTTGAAA-TA-AATA-AGTTAC-CTTTCTGTT--GAAAGTG-GTG-AA----GA-TG-AGATTGTT--TTTTACTACCC---CC--ACGATTTCATCCCCA-C-TGTTTTTTAGTTAGTCAAGCTAT-TTTataccacttggctgtg
gi|9 : ctcgttaacacaataggctcccgttaagggggcaTTG-AACTC-G-TG--TTTGCTTAGTCCCTTCAT-GC-TTTGTT--TCTTT-TGTCAGCATTTC-AT-GGCTATAACTTTTG-CAAAT-AAC--AAATTTCCG-TGAGCGTG----TCGCCGTTAAGACGGCATTTG-GTTAC--C-TTT----ATTATTATTGTATCTGCTCGGCAATTGTGCAGC------TTGTTTTCATAAGCGG-TCTGGGGAGACTTGTTTGATACGAATTCGTTTGTGCGAGg
blockSeqs : T CAA CA AG GT A G T TCGA AAT AGAGTTTTTCACTAG GTGG C TT A C CTA TAT T C AA A A A G A CAGG TAC T CTG C TCGT C G G ACT CA TA T GC C G A A T A CT TTGTAAA CC AT A GA AA G GT A . CT CC G GA T CA CCCATT T . AG T T T C C TG C T CA G A A A G T T A G A CTG TG A T T T GAT TA TTACTACCCCC TCATC C A TA T GC C CT AACT CC A TAGT GCAAAAA AA T T T C T TGTGGAACT TG C AA A G GT T T T TCTT C AG TT A C A CAGA TT T C TATAA A TGCC ATTATTGTATCTGC TG G ACGATT AAG T A C TT T G AAAT AA A GG T TGGGGGT T C TA C G TTC .
blockSeqs : T AA . . CG . . . . TAT CGT . . G . . . . . . . A . . G . CAGG . . CAG . TCG . . . . . . . . C T . . A A . . . . . . A . . . . C . . . . . G . . . . . . . . . . . . . . . T . T . . . A . . . . . . . . TCTCCTTCC TC . A . . . . . A CG . T . . . . . T . TT G C AT . . . . . . TCC . . . . C A AAAT TT . . TAC . . . . . T . . . . A . G A AG .
blockSeqs : T AA . . C . . . . TTT CT . . C . . . . . . . A . . G . TT . . CTG . TCG . . . . . . . . C G . . A . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . C . . . . . A . . . . . . . . TCCCCCAA T . A . . . . . A C . . . . . . . T . CT . C A . . . . . . C . . . . C A AAA T . . . . . . . . . . . . . G . . .
blockSeqs : T AA . . C . . . . TAC CT . . T . . . . . . . A . . T . TT . . TA . . . . . . . . . . C G . . A . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . T . . . . . A . . . . . . . . CCCC T . G . . . . . G C . . . . . . . T . T . T A . . . . . . C . . . . C . AA T . . . . . . . . . . . .
blockSeqs : . AA . . C . . . . TT TT . . T . . . . . . . . . . T . TT . . G . . . . . . . . . . . A . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . T . . . . . G . . . . . . . . CCCC T . . . . . . . A C . . . . . . . . . T . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . A . . C . . . . TA T . . G . . . . . . . . . T . . . . C . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . A . . . . . A . . . . . . . . TCTT T . . . . . . . . A . . . . C . . . . . . . . .
blockSeqs : A . . C . . . . . C . . C . . . . . . G . . . . . C . . . . . . . . . . . . . . . . . . . . . A . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . .
blockSeqs : . .
blockSeqCons : AA** CTG TCG* C** TCCC************ T**** AGA***
originalCons : AAAATTGATGACTAGATGGGTTTC--A-TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATAC-GATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTT-----CCC---CC--AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAAC--AA--TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
finalCons : AAAATTGATGACTAGATGGGTTTCAA--TCACA--ATA--T-C-ATTTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATACTGATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGAC--AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAA-TA-CATA-AGTTGCACTTT---TT--GGAAATGTTTG-AGT-ACGA-TG-A---TGTT--TTTCCC------------AAAATTT----CCCA-CATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCAT-A-TCTAGATTTG-AACTC-GGTG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAACAGA---TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
Alignments
lowQualScore : 1111 3333333333333333 1111 1111 111 11 1111 111 1 1111111 11 111111 222222222222222222 11111 11 1111 2222 2222222 333333333 11 1 111111 111 11 22222 1111 33333333333333 333333 111 1 11 1 1111 3333333 11 222 55555555555555
lowQualScore : 0 5 66 66 55 4 5 5 0 0 5 0000 555 1111111111111111 0000 4 99 5 5 888 888 6 5 77 5 5 5 1 5 9999 000 5 66 5 7777 0 8 8 8 111 99 99 6 99 4 4 5 5 1 1 77 8888888 77 77 5 77 33 5 66 5 5 666 66 5 66 5 66 999999 5 5 66 5 5 5 5 5 66 4 4 66 4 4 4 1 4 8 4 4 4 1 777 55 5 5 0 5 5 888 66 777777777777777777 55555 33 0 66 5 0 66 5 77 0000 777 5 0000 1111111 99 6 6 6 6 000000000 55 1 6 6 6 99 5 5 5 000000 5 77 0 77 5 0 4 7 6 777 44 5 5 44444 5 4444 99999999999999 99 6 111111 444 8 8 0 00 0 2 8888 33 7 0 22 1 1111111 1 1 88 1 1 111 11111111111111
lowQualScore : . . .. .. .. . . . . . . .... ... ................ .... . .. . . ... ... . . .. . . . . . .... ... . .. . .... . . . . ... .. .. . .. . . . . . . .. ....... .. .. . .. .. . .. . . ... .. . .. . .. ...... . . .. . . . . . .. . . .. . . . . . . . . . . ... .. . . . . . ... .. .................. ..... .. . .. . . .. . .. .... ... . .... ....... .. . . . . ......... .. . . . . .. . . . ...... . .. . .. . . . . . ... .. . . ..... . .... .............. .. . ...... ... . . . .. . . .... .. . . .. . ....... . . .. . . ... ..............
lowQualScore : 1 0 11 11 66 4 0 0 1 1 0 6666 888 0000000000000000 6666 4 22 0 0 888 888 7 7 99 0 0 0 0 0 3333 000 7 44 7 3333 8 0 0 0 777 22 22 7 22 3 3 7 7 7 4 99 6666666 99 99 7 99 66 0 99 0 0 000 99 0 99 0 99 444444 0 0 99 0 0 0 0 0 99 4 4 11 4 4 4 0 4 9 4 4 4 0 000 55 0 0 2 0 0 888 99 888888888888888888 88888 11 4 99 0 2 99 0 99 1111 333 7 8888 7777777 22 7 7 7 7 777777777 88 0 0 7 7 22 7 7 7 111111 7 99 1 99 7 1 3 3 7 888 55 7 0 33333 7 2222 22222222222222 22 7 000000 000 0 0 0 22 0 5 2222 55 3 7 00 0 0000000 0 0 55 0 0 000 55555555555555
consensus : AAAATTGATGACTAGATGGGTTTC-AATCACA--ATA--TC-AT-TTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATACTGATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAAT-A-CATA-AGTTGCACTTT---TT--GGAAATGTTTGA-GT-ACGA-TG-A---TGTT--TTC-------C-----CC---AAAATTT----CCCAC-ATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCATA-TCTAGATTTG-AACTCGG-TG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAA-CAAA-TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
Reference ( family-1319 ) : AAAATTGATGACTAGATGGGTTTC-AATCACA--ATA--TC-AT-TTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-CGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTNAG-TAT--TTTAC---A-CGGAAAATACTGATTTTA-GTAACTCG-ACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AGA--AA--TT-TACGGG--A--TG-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATAAA-GNATTTCT-C-TGAAAT-A-CATA-AGTTGCACTTT---TT--GGAAATGTTTGA-GT-ACGA-TG-A---TGTT--TTT-------C-----CC---AAAATTT----CCCAC-ATGATTTT--G-TAGTCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT-------TGT--GGTTGGCATA-TCTAGATTTG-AACTCGG-TG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCAAATAAA-CAGA-TTCCGTTGAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGGTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATTGGACGTAGAACGTNNCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCNAGTTTGTTTTTACGTTACTATCATATGGGGGTGGGGGTGTTGAACCATGTGATGTTGCGCGNACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGCTAGCTTNTATTTATAGCCGCTTTCNTCGANCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGGC
gi|1 : AAAATTGATGACTAGATGGGTTTC-A-TCACA--AT---TC-AT-TTGTTTCTCTA-C-AGCCTGTTTCG-TAAGA----GGGATGTATCCCCCTCA-----------C-T--CGTCAGG----AGAAT-AA-TGA-C-ATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-A-CTTAA-TAT--TTTAC---A-CGGAAAATA---ATTTTA-GTAACTCGTACAATAGTTCAA-TGG-CTC-TAAGTAA---CTCGTAC--ATTG--GTTGTT-GA--CCATGGTTA-CA-CACAGGA-CTGGGT--AAAT-------AAA--AA--AT-TACGGG--A--TG-ACGG--CATGT-GGCTGAAT-AAGTTC--T-G--A-AC--GC------TTATT-CCAA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--C-T-ATAAA-GTATTTCT-C-TGAAAT-A-CATA-AATTGCACTTT---TT--GGAAATGTTCGA-GT-ACGA-TG-A---TGTT--TTT-------C-----CCCC-AAAATT-----CCCAC-ATGATTTT--G-TAGTCAA--TAT-TTCTATC--TTTTA---ATGT-T-CAT-ATGAA----CTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGGT--------GT--GGTTGGCATG-TCTAGATTTG-AACTCGG-TG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACCTTTGCCAAATAAA-CA-A-TTCCGT-GAGCGCGACATTCGCCGTTAAGCGGGCA-TTG-GT-----C-TTT----ATT--------------CCGGCAAT--TGTA-C------GTTTATTCAA---CGG-TCCGGGG-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCAATCGCG---TTTTGCATAGATGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAACTGGGCGTAGAACGTTTCCCATCGGGAAACACTCATCTATGATCTTGAGGAACTGTTTGCCCAAGTTTGTTTTTACGTTACTATCATATGGAGG-------GTTGAATCATGTGATGTTGTGCGAACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTTGTTGTATGCTAGCTTGTATT--TAGCCGCTTTCATCGACCGCTTTTTGGTATATGCCAGCAGCTTTGATGAA---TTCTTTGTCCGATGAAATTGATGACAATCGGTGGTTAATGCCTGATGGTATAGCTTTAATTATGGAAGAC
gi|10 : AAATTTGCTGA-TAGATGGATTTC-AATCACACAATA--TC-AT-TAATTTCTCTAAC-AGC-------G-TAAGG----GGGACAT-TCCCTCCCA-----------C-T--CGTCAGG----AGAAT-AATTGA-C-ATTCTAT---AATACTGTA-A--CG-AAAAACA-CTACACGAA-CTGAG-TAg
gi|11 : cctatatattCATGGTTA-CA-CTCAGGA-CTGGGT--AAAT-------AGA--AT--TT-TACGGG--A--AT-ACGG--CGAGT-G-CTGA-C-AAAATC--T-G--A-AA--GC------TTATT-C-AA--TG-AAG-GTT-TTTTCGG-GAT--G-GC-AAA--T-C-ATAAA-GAATTTCT-C-TGCAAT-A-CATA-AGTTACATTTG---TT--TGAAATGTTTGcagagtttcac
gi|12 : aag-GT-----C-TTT----ATT--------------CCGGCAAT--TGCA-CACGATTTTTTTTTCAT---CGG-TCTGGGG-CACTTGTTTGATA-GAA-ACG-TTGTGC-AGTCAATCGCAAATTTTTGCATAAGTG
gi|13 : ttATTGATGGCTAGATGGG--TC-AATCACA--ATA--T--AT-GTTTTCCTCT--C-ATCC---TTCG-TAAGA----GGATTG----CCCCTCA-----------CGT--CGTCTAG----A-AAT-AT-GAA-C-ATC---T---AATA
gi|14 : T-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--G-ATTGACTATAACTTTTGCCAAATAAA-CA-A-TTCCG-TGGGCGCGACATTCGCCTTTAAGCGGGCA-TTG-
gi|15 : TTAATGACTAGATGGGTTTCCAATCACA--ATA--T--GTATTGTTTCTCTA-C-AGCCTGTTTCGTTAAGA----GGGATGTA-CCCCCTCA-----------C-T--CGTCAAG----GAAAT-
gi|16 : AAT-GG-CGA-C-ATC---T---AATAC-ATGCA--CG-AAAAACACCTACACG-A-CTGAG-TACAGGTTAC---A-CAGAAAATACTGATTGTG-GTAAC----ACAATAGT
gi|17 : ACA--ATA--GC-AT-TTATTTCTCTA-C-AGACTGTTTTG-TAAGA----GGGATAAATCCCCCTAA-----------T-T--CGTAAGG----AGAAA-AA-TGA-C-ATC---T---AA
gi|18 : ---TTTGGCAT--GTGGCATACAACTGTAAGATACTTTAATGGTGTTTCTGTTGATAATAAGAAATAGAAC
gi|19 : -A--CGAAACA-CACCAACACG-A-CTGAG-TACAGGTTAC---A-CAAAAAATACAGGTTCTA-GTAACa
gi|2 : AAATTGATGAC-AGATGGGT--C-AA-CACA--ATA--TCGAT-TTGTTTCTCTA-C-AGTCTGTT-CG--AAGA----GG-ATGTATCCCC-TCA-------------T--CGTCAGG----AGAA--GA-TGA-CCATC---T---AATAC-ACA-A--CGAAAAAACACCTGCACG-AACTTAA-TAT--TTTAC---A-CGGAAAA-A-TAATTTTA--TAACTCGTACAATAGT-CAA-TGG-CTC-TAATAAA---CTCGTAC--ATTC--GTTGTT-GA--CCATGTTCAACA-C-CAGGAACTGGGT--AAAT-------AAA--AA--TT-TACGG---A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--T-G--A-AC--GC------T-ATT-C-AA--TG-AAG-A-T-TTTTCGG-GATTGG-GC-AAA--T-T-ATAAA-GTATTTCTGC-TGAGATTA-CA-A-AGTTGCATTTT---TT--GGAAATGTTTGAAGT-TAGA-TGTA---TGTT--TTC-------C-----CCCAAAAAATTT----CCCACCATGATTTT--T-AATTCAA--TATCTTTTATC--TTTT-----TGT-C-CAT-TTGAA----TTTGCTGAG-------CTCAAGGTGGCG-TTTTTTTTT-G-TGGGAT-ACGGAA-TGAATGGGT-------TGT--GGTTGG-ATAATCTAGATTTG-AACTCGGGTG--TTTGCT-AGTCCCA-CATAGC-TTTGTT--C---TCTGTC--CAT--C-ATTGGCTATAAC-TTTGCCAAATAAACCAGA-TTCCGTTGAGCGCGACATTCGCCGTTTAGCGGGCA-TTG-GT-----CATTT----ATT--------------CCGGCAAT--TGCA-CT-----TTTTTTTCAT---CGGTTCTGGGG-CACTTac
gi|20 : ataatttctagagtggctcaacgtgatctcacggagctatatcATTGATGACTGGATGGGTTTC-AATCACA--ATA--TC-AT-TTGTTT
gi|21 : tTCTTTGTCCGATGAAATTGATGACAATCG
gi|3 : -GC-AAA--T-T-ATAAA-GCATTTCT-C-TGAAAT-A-CATA-AGTTGCACTTT---TT--GGAAATGTTTGA-GT-ACGA-TG-A---TGTT--TTC-------C-----CC---AAAATTT----CCCTC-ATGATTTT--G-TAATCAA--TAT-TTTTATC--TTTTA---ATGT-C-CAT-ATGAA----TTTGCTGAG-------CTC--GGTGGCG-TTCTTTTTT-A-TGGGACTACGGAA-TGAATGGGTGTGGAACTGT--GGTTGGCATA-TCTAGATTTG-AACTCGG-TG--TCTGCT-AGTCCCA-CATAGC-TTTGTT--C---T-TGTC--CAT--C-ATTGGCTATAACTTTTGCCA
gi|3 : CA-TTG-GCTATAAC-TTTTGCCATT--------------CCGGCAAT--TGCA-C------TTTTTTTCAT---CGG-TCTGAGA-CACTTGTTTGATA-GAA-GCG-TTGTGCGAGTCCATCGCA---TTTTGCATAGATGGCATAC-------------TTTAATGGTGTTTCTGTTGATAATTGGACATAGAACGTGGCCCATCGGGAAACACTCATCTATGATCTTAAGGAACTGTTTGCCTTAGTTTGTTTTTACGTTACTATCATATGGGGATGGGGGTGTTGAACCATGTGATGTTGCGCGTACGATTTCGTCTGCTGTTTGTCCTAGTTTTTGCCGATTCGTCGTATGTTAGCTTCTATTTATAGCCGCTTTCCTCGAGCGCTTTTTGGTATATGCCAGCAGCTTTGACGAATTCTTCTTTGTCCGATGAAGTTGATGACAATCGGTGGTTA--------------AGCTTTAATTATGGAAGGCttccggcaattgcactttttttcatcggtctgagacacttgtttgatagaagcgttgtgcgagtccatcgcattttgcatagatggcatactttaatggtgtttctgttgataattggacatagaacgtggcccatcgggaaacactcatctatgatcttaaggaactgtttgccttagtttgtttttacgttactatcatatggggatgggggtgttgaaccatgtgatgttgcgcgtacgatttcgtctgctgtttgtcctagtttttgccgattcgtcgtatgttagcttctatttatagccgctttcctcgagcgctttttggtatatgccagcagctttgacgaattcttctttgtccgatgaagttgatgacaatcggtggttaagctttaattatggaaggc
gi|4 : gcaaattataaagcatttctctgaaatacataagttgcactttttggaaatgtttgagtacgatgatgttttccccaaaatttccctcatgattttgtaatcaatatttttatcttttaatgtccatatgaatttgctgagctcggtggcgttcttttttatgggactacggaatgaatgggtgtggaactgtggttggcatatctagatttgaactcggtgtctgctagtcccacatagctttgttcttgtccatATTGATGACTAGATGGGTTTC-AATCACA--ATA--TC-AT-TTGTT-CTCTA-C-AGCCTGTTTC--TAAGA----GGGATGTTTCCCCCTCA-----------C----CGTCAGG----AGAAT-AT-GGC-C-ATC---T---AATAT-ACA-A--CGAAAAAGCACCTGCACG-A-CTTTGATAT--TTTAC---ATCGGAAAAT---GATTTTA-GTAACTCG-ACAATAGTTCAA-TGGGCTC-TAAGTAA---CTCGTAC--ATTG--GTTGTTTGA--CCATGGTTA-CA-TACAGGA-CTGGGT--GAAT-------AAA--AA--TT-TACGGA--A--TG-ACGG--CAAGT-G-CTGA-T-AAGTTC--TGG--A-AC--GT------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-TAATAAA-GTATTTCT-CTTGAGAT-A-CATA-AGTTGCACTTT---TTTGGAAAATGTTCGA-GT-ACGATTG-A---TGTT--TTC-------C-----CC---AAAATTTC---CCCAC-ATGA--TT--G-TAATCAA--TA--TTTTATCCTTTTTA---ATGTCC-CAT-ATGAAT---TTTGCTAAG-------CTC--GGTGGCG-TTCTTTTTT-G-TGGGATTACGGAA-TGAATGGG--------TGTG-GGTTGGCATATTCTAGATTTGAAACTCGG-TAGTTTTGCT-AGTCCCA-CATAGCTTTTGTTTCC---T-TGTC--C-T--CAATTGGCTTTAACTTTTG-CAAATAAA-CAAA-TTCCGTTGAGCGCGACTTCCGCCGTTAAGCGGGCA-TTGCGT-----C-T
gi|5 : TTAC-AATCACA--ATAAGTC-AT-TTGTTTCTCTA-CGAGCCTGTTTCG-TAAGATCGAGAGATGTACCCCCTTCAAGAGTTTTTCAC-TAGCGTAAGGGTGGAGAATCAA-CGAAC-ATC---TTATAACAC-ACA-AAACAAAGAAAGAC-TGCACG-A-CTTAA-TAT--TCTACTACA-CAGAAAATAC--ATTTTACGTAAGTCG-ACAATAGTTCAACTGG-CTCGTAAGTAAACTTTCGTAC--ATTG--GTTGTT-GG--C-ATG-TTA-CAACACAGGA-CTAGGT--AAATTTGTAAAAAACCAA--TTATACGGG--AAATG-ACGG--CAAGT-G--TGA-CTAAGT-C--T-AGAA-AC--GCG-----TTATTTC-AAAGTGTAAGTA-T-TTTATTG-GAT--GCGCTAAA--TGT-ATAAAAGTATTTCT-C-TGAGAT-A-CATA-AGTTG-GCTTT---TT--GGAAATGTTTGA-GTTACGA-TG-A---TGTTTATTT-------CTCCTTCC---AAAATTT----CCCAC--TG-TTTT--G-T----AA--TAC-TTTTA--------G---ATGT-CGCATAATGAATAGTTCTGCTGAGGCAAAAACTC--GATGGCGTTTCTTTTAT-GTTGGGATTACGGAATTGAATTGGC-------TGTTGGGTTGGCAT
gi|6 : gaaatgataaggatgttc-ACGG--CAAGT-G-CTGA-C-AAGTTC--T-G--A-GC--GC------TTATT-C-AA--TG-AAG-A-T-TTTTCGG-GAT--G-GC-AAA--T-T-ATGAA-GAATTTCT-C-TAAAAA-AACAT---GTTACACTTT---TG--TGAAATGTTTGA-GT-ATGA-TG-A---TGTT------------------------------------------GATAAT--G-TAGTCAG--TAT-TTTTATC--TTCTA---ATGT-C-CAT-ATGGA----TTTGCTTAG-------CTC--GGTGGCT-TTCTTTTTTTG-TGGGATTACGGAA-TGAATGGGT--------GT--AGTTGGTATA-TCTAGATTTG-AACTTGG-TG--TCTGCT-AGACCCA-CATAGC-TTTGTT--C---C-TGTC--CGT--C-ATTGGCTATAACTTTTGCTAAAT-----------------AGTGCGACATTCACCGTTAAGCGGGCC-TTG-AT-----C-TTT----ATT--------------CCGGCAAT--TGCA-
gi|7 : tAAAAATACCTACACG-A-TTGAG-TA-------C---A-CGAAACATACTGGTTCTA-GTAAC----ATAATAGTT------G-CT---AAGCA--------------------TTGTT--A--C-------A-CA-CATATGA-ATGTGT--AACT-------AGA--AA--TT-TGCGGG--AA-TG-GCGG--TAAGT-A-CCGA-C-AAGTTC--T-G--A-AC--GC------TTATT-C-AA--AG-ATG-A-T-TTTTCAG-GAT--G-AC-AAA--T-T-ATAAA-GAATTTCT-C-TAGAAT-G-CATAGGGTTTTTTTTT---TT--GG
gi|7 : tacatcaccccgTTT---TT----ACATATTTGA-GT-ATGA-TG-A---CATT--TTT-------C-----TT---AAAATTT----CCCAC-GTGATTTT--G-TAGTCAA--TAT-CTTTATT--ACTGAACTATGT-A-CAT-ATtttttttgttgttttttttttttttttacatatttgagtatgatgacatttttcttaaaatttcccacgtgattttgtagtcaatatctttattactgaactatgtacatatataccacttggctgtg
gi|8 : tacatcaccccgaaaaatacctacacgattgagtacacgaaacatactggttctagtaacataatagttgctaagcattgttacacacatatgaatgtgtaactagaaatttgcgggaatggcggtaagtaccgacaagttctgaacgcttattcaaagatgatttttcaggatgacaaattataaagaatttctctagaatgcatagggtttttttttttggtttttttgttgtttttttttttAA---CTCGTACCAAGCGTAGTTGGT-GAGCCCATGGTTA-CA-AACAGGAACTGAGTCTAAAT-------AGA--AAATTT-TACGGGGAA--TGGACAGGTCAAGTAG-CTGA-C-TAATTCCCT-G--ATATCAGCCCCATTTTATT-C-AA--TG-AAG-G-CCTTTTCGGCGAT--G-GC-AAACAT-T-ATAAA-GAATTTCT-CTTGAAAT-A-AATA-AGTTAC-CTTTCTGTT--GAAAGTG-GTGA-A----GA-TG-AGATTGTT--TTTTACTACCC-----CC---ACGATTTCATCCCCAC--TGTTTTTTAGTTAGTCAAGCTAT-TTTataccacttggctgtg
gi|9 : ctcgttaacacaataggctcccgttaagggggcaTTG-AACTCG--TG--TTTGCTTAGTCCCTTCAT-GC-TTTGTT--TCTTT-TGTCAGCATTTC-AT-GGCTATAACTTTTG-CAAAT-AA-CAAATTTCCG-TGAGCGTG----TCGCCGTTAAGACGGCATTTG-GTTAC--C-TTT----ATTATTATTGTATCTGCTCGGCAATTGTGCAGC------TTGTTTTCATAAGCGG-TCTGGGGAGACTTGTTTGATACGAATTCGTTTGTGCGAGg