lowQualScore : 1 111 2222222222 11 11 1 1 1 11 1 3333333333333333333333333 333333 222222 11 1 2222222 11 11 11111 444444444444444444444444444444 11111 1111 222222222 2222222222 555555555555555555 222 11 111 33333333333333 11 1111 11111111111 1 111 111 11 5555555 22222222222222 1
lowQualScore : 2 777 4444444444 5 11 99 3 6 4 3 0 3 6 666 6 0 3 55 44 0 44 6 99 7777777777777777777777777 3 6 1 777777 44 777777 3 3 88 0 88 9 2 1111111 8 4 4 4 11 4 8 4 88 66 88 88888 4 999999999999999999999999999999 11111 1 1111 8 777777777 1 1 0000000000 4 1 1 4 000000000000000000 4 5 333 1 1 3 3 7 3 3 11 55 4 8 4 666 4 55555555555555 4 4 55 3 33 5 2 77 8 77 5 3 5 9999 2 5 33 55 22222222222 2 7 0 2 33 777777 5 0 2 666 5 66 8 5 444 2 66 66 2 4 11 33 4444444 33 44444 4 4 4 77777777 00000000000000 88 2 8888888 2 2 2 0 5
lowQualScore : . ... .......... . .. .. . . . . . . . ... . . . .. .. . .. . .. ......................... . . . ...... .. ...... . . .. . .. . . ....... . . . . .. . . . .. .. .. ..... . .............................. ..... . .... . ......... . . .......... . . . . .................. . . ... . . . . . . . .. .. . . . ... . .............. . . .. . .. . . .. . .. . . . .... . . .. .. ........... . . . . .. ...... . . . ... . .. . . ... . .. .. . . .. .. ....... .. ..... . . . ........ .............. .. . ....... . . . . .
lowQualScore : 8 999 4444444444 7 77 44 3 7 7 3 0 3 7 333 7 0 3 88 66 0 66 7 22 8888888888888888888888888 3 7 7 777777 66 999999 3 3 88 4 66 2 0 8888888 0 0 0 0 00 0 0 0 22 44 00 88888 4 444444444444444444444444444444 11111 0 0000 9 666666666 1 1 4444444444 4 9 9 4 888888888888888888 0 6 555 9 2 0 6 3 6 6 00 55 0 0 0 000 4 22222222222222 4 4 22 2 99 3 7 33 0 33 3 6 3 3333 7 0 44 99 99999999999 5 2 0 5 44 444444 0 9 5 111 0 99 8 0 666 4 55 55 4 7 22 22 5555555 22 99999 7 7 7 22222222 88888888888888 88 4 1111111 5 5 5 0 0
consensus : GCTTCGGCC--AATTT-----C-A-CTT-TCGC-TGCTGTTTCGACA-AAA-CGAA-TTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCGA--GGTCT--T-CTGGT--CC-T--GGGGN----------------------C-G-TT-GCAAA--A---G--CAAC-G---GCGGGT-C-A-NGTGGCTGT--AGCGTCAAA-GCA--TGT--CCGA-AC-CT-C-GTG-AT-C-GA-G-CGGGCTC-TGTTCAGCA-C---G-TG-TTGAGG--G----TC-GT--------CCTCGCC-G-GGTC-----GCCC-TNTAC-C-----N--AAGCTGGGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCTCN--TGTTAGGTCTGAAGACNGGC-GA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAA-GGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CC--------GAA-TGG-ACGAA-TG--TT--GA--G-CCCGAGGC--A-ATTT--GGCCACAAG-ACAGTTGACATG-CCG-ATAC--CT--CACGA-AC-T--T--TTAACCAG--AGGAATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
Reference ( gi|14 ) : GCTTCAGCC--AATTT-----C-A-CTT-TCGT-TGCTATTTCGACA-AAA-CGTA-TTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCGA--GGTCT--T-CTGGT--CC-T--GGGGC----------------------C-G-TT-GCAAA--A---G--CAAC-A---ACGGGT-C-A-TGTGGCTGT--AGCGTCTAA-GCA--T-T--CCGA-AC-CT-C-GTG-GT-C-GA-G-TGGGCTC-TGTTCAGCA-C---A-TG-TTGAGG--G----TC-CT--------CCTCGCC-GTGGTC-----GTCC-TCTAC-C-----G--AAGCTGGGC--A-C-TTG-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCTCA--TGTTAGGTCTAAAGGCTGGC-GA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CC--------GAA-TCG-ACGAA-TG--TT--GA--G-CCCGAGGG--A-ATTT--GGCCACCAG-ACAGTTGACATC-CCG-ATAC--CT--CACAA-AC-T--T--TTAACCAGCTAGAAATTA--GG---TACGCAG-TAAATCGA-TGT-CAGT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|13 : GCTTC-GCC--AATTT-----C---CAT-TCGC-TGCTGTT--GACA-AAA-CGAA-TTCG--A-T-ACAGC--TCCT-GAATGGG-CG---GTCGA--G-TCT--T--TGG---------GGAGT--------------------------TT-GCATT--ATGTG--CAAT-G---GCGGGT-C-A-AGTGGCTGT--AGCGTCAAA-GCA--TGT--CGGG-ATTCT-CTGTG-ATTC-GG-A-TGGGCTC-C-TTCAGCA-CG--A-TG-TTGAGG--G----TC-GC--------CC--ACC-G-GGTC-----GCCCGTACAC-C--------AAGCTGGGC--A-C-T-A-T-CACAT-CCGC-TATTCC--------ACTGC-TTTGACCGTCTCGCCTGTT--TTCTGAAGACGGGCCGA-C-ATCGCT-GATGAGAA--T--TGAT-GCA-TAA-TAA-GAGTG-TCACT--CA--------TC-AGAA-TGTTTA-AAGC-T--TT--------ATAA---AA--C-TGGGT-C---------AATGTAAGT--GAA-C--TGCGCAT---TA-CCCAAAAGTGGGA-TCA-GCG-G-TGACTT--TA--G--CCGAGGC--A-ATTT--GGCCACAAG-ACAGTT-ACATCGCCG-ATAC--CT--CACGA-AC-T--T--TTAACC----AGGAATTA--GG---TACCCAG---AATCGA-TGT-CAAT------TAA------------A-GG--GAT-TATT-------T-A-GATTATGGAAAT-TAAATA-ATC
gi|3 : tgaaagttgactgtcattgcctcgtaagcttgtgcactcttaggcaaataGCTTCGGCC--ACTTT-----C-AACTTGTCGCATGCTGTT--GACA-AAA-CGTAATTCGCTG-TCACCGCTAACCT-GA-TGGGCGGTAGGTCGA--GGTCTGTTGTTGGTTCCC-T--GGGGG----------------------GAG-TT-GCATA--T---GTGCAAT-G---GCGG---T-A-AGTGGCTGTCGGGCGTCAAAAGCA--T-TGTCAGG-AT-CT-C-GTG-TT-C-GA-GGTGGGCTC--GTCCAGCAAC---G-TG-TTGAGGTCG----TC-CTACACTGGGTCTCGCCCGTGTACCAAAAGCCC-CCCGC-CCTGGGG--AGG--GGGCCAA-C-TTA-TACACATTCCG--TATTCT----ACTCAATGC-TTG-ACCGTCTCC--TGTTAGGTCTGAAGACGGGC-GA-CAATCGCTGGATGAGAA--T--TGCTAGCA-TAA-ATAAAGCTG-TCACTC-CA--GACCGTTCAAGAATTGTTTATAAGCATGGGTG-GCAA--GTAAT-GAA--C-TGCGC-CTT-------AAAGGAAGT--GAATTAATGCGCATAAGCGACA--------GAG-TGG-ACAAA-TG--TT--TGCCG-CCAGA-GG--C-ATTT--GGCC-CAAG-ACAGTTGACAT--GCG-ATAC--CT--CACGATAC-TG-T--TTAACC----AGGAATTA--AGGTATACGCAG-TAAATCGA-TGT-CAAT------TAA------------AGGG--AATATATT-------TGA-GA-TATGGAAAT-TAAATA-ATCctca
gi|6 : ttatatcataatttaaatacatgttgttgtgtaacatacaagaggtacaacacatgataaatgaaattatgagaatattaccgcgttttaaaaggaaagaagacgtacaaaatttgaacaggtgcgatattggtcccctgacagcagtcaccgcagctttccagtttcgaaagtctgactgtcatgcctcgaaagcttgtgcacacttagcagaaaaaaataGCTTCGGCCTAGATTTTCCGAC-A-CTT-TCGC-TGCTGTT-CGACAGAAA-CGGA-ATCG-TGGTGACGAC--GCC--GA-TGGG-GGTAGGTCGA--GGTCT--T-CTGGT--CT-T--GGGGCGAGGTCGTGCTGGTCTTTGGGGC-G-TTGGCACA--AT--G--CGTC-ACGGGCGGGT-CAA-TGTGGCTGT--Actcat
gi|12 : acttagctggtgctttaaagcatacttcgtacgtggaaaagaactataaattgtatggattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaacgagtatagcagaggtaatgaaagggtgaccgatgaggacgtctccaggactgggtacttcttgcggccaaatatcaggagctggccttaggttcctgaggatttggcaaaatggaaggcaaactcagcaagaaattaaatgatgctgatatgggtttttaaaatataaaattgagttgtatattattttgttatagtagtttaattatagtagggtaacatacccaaaaggtttactgaacaacttgagtaaagaatttgaaatgtgtgtatggaagaaggaaagaaacgtaccagaagattgaaacaggtcgatatcgatggccatgaacaagcatcacccagtttccccagttgaaagtactgtcgttgcctcggaagctcgtgcactcttagTTCGGC---AATT------C-A-CTT-TCGC-TGCTAGTT-GACA-A---CGAA-TTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCGAAAGGTCG--TACTGGT--CTGT--GGGGG----------------------A-G-TT-TCATAT-G---G--CAAT-G---GCGGGT-C-AACGTGGCTGT--AGC-TCAAAAGCA--T-G--TCGAGAT-CC-T-GTGTAT-CCGA-G-GGGACTC--GATCAGC--C---AGTG-TTGAGG--G----TC-G---------CCTCACC-GGAGTC-----GCCC-TGTACAC-----C--AAGCTGGGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCTCGC-TGTTAGGTCTGAAGACGGCC-GAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA--AGCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-----------GAA-TGG-ACAAA-TG--TT---A--G-CCCGA-GC--A-ATTTTCGGCCACAAG-ACATATGACATC-GCG-ATACAGAT--CACGA-ACTT--T--TTAACCA---AG-AATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------TAA--------------GG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-t
gi|11 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagTTCGGC---AATT------C-A-CTT-TCGC-TGCTAGTT-GACA-A---CGAA-TTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCGAAAGGTCG--TACTGGT--CTGT--GGGGG----------------------A-G-TT-TCATAT-G---G--CAAT-G---GCGGGT-C-AACGTGGCTGT--AGC-TCAAAAGCA--T-G--TCGAGAT-CC-T-GTGTAT-CCGA-G-GGGACTC--GATCAGC--C---AGTG-TTGAGG--G----TC-G---------CCTCACC-GGAGTC-----GCCC-TGTACAC-----C--AAGCTGGGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCTCGC-TGTTAGGTCTGAAGACGGCC-GAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA--AGCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-----------GAA-TGG-ACAAA-TG--TT---A--G-CCCGA-GC--A-ATTTTCGGCCACAAG-ACATATGACATC-GCG-ATACAGAT--CACGA-ACTT--T--TTAACCA---AG-AATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------TAA--------------GG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-atctc
gi|9 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatag--AATTT-----CCA-CTT-TCGC-TGCTGTT--GACA-AAAATGAA-TTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCGAA-GGTCT--T-CTGGT--TC-TTGGAGGT----------------------C-G-TTTGCAAA--ATGCG--CAAC-TT--GCGGAT-C-A-AGTGGCCGTT-AGCGTCAAA-GCC--TGT--CGGA-AC-CTTC-GTA-GT-C-GACG-TCGAGTC-T---CAGCA-CGCCA-TG-TTGACG--GCGGCTCGTT--------CCTCGCC-GGGATC-----GCCC-TTTAC-C-----CCCAAGCTGGGC--AAC-TTA-T-CA-AT-CCGCCTATT-TCGGTAC--ACCGCGTTGGACCGTCTC-----CTAGGT-TGAAGACTTGC-GA-C-ATTGCT-GATGAGGA--TATTGAT-GCA-TAA-AAA-AACTGGTCACT--CACAG-----TC-AGCA-GATTTA--AGCCT--GTG-GC-A--GTAAAAGAA--C-GGCGA-CAT----AATAAAGGAAGT-AGAATT--TGTGCATT-GGG-CC--------GAAATGG-ACGAAATG--TT--G---G-CCCGAGGC--A-ATTT--GGCCACAAG-ACAGTTGACATG-CCGTATAC--CT--CACAA-AC-T--T--TTAATCAG---GAAATTATGAG---TACGCAG-TAAATCGA-TGT-CAATAAAAAATAAAAAAAAAAAAATAAGGT-AAT-TATTTTAGATAT-A-GA-TATGGAAAT-TAAATA-ATCatctc
gi|17 : aaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaatagctttgggcccag--AATTT-----CCA-CTT-TCGC-TGCTGTT--GACA-AAAATGAA-TTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCGAA-GGTCT--T-CTGGT--TC-TTGGAGGT----------------------C-GTTT-GCAAA--ATGCG--CAACTT---GCGGAT-C-A-AGTGGCCGctca
gi|20 : ccacaatggaaggcactacaagcaaaattagatgcaatatgggtttttaaaaatacagagatatatagttcatctatttttttttttttaaattatagttctgaatatataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagttgaaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaatagctttgggcccagGCTATTTCGACA-AAA-CGAA-TTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCAA--GATCT--C-CCGGT--CC-T--GGGGG----------------------C-G-TT-GCAAA--AAC-G--CAAC-G---GCAGGT-A-A--GTGGCTGT--AGCGTCAAA-GCA--TGT--CCAA-AC-CT-C-GTG-GT-C-GA-G-CGGGCTC-TGT
gi|4 : aaagaaacgtaccaaaattgaacaggtgcgatatcggtccccggacagcatcacccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTCGACA-AAA-CGAA-TTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCAA--GGTCT--T-CTGGT--CC-T--GGGAC----------------------C-G-CT-GCAAA--A---G--CAAC-G---GCGGGT-C-A-CTTTGCTGT--AGCGTCTAA-GAAT-T-T--CCGA-AC-CT-C-GTG-GT-C-GA-G-CGGGCTC-TGTTCAGCA-C---A-TG-TTGAGG--G----TC-GT--------CCTCGCC-GTGGTC-----GTCC-TCTCC-C-----C--AAGCTGGGG--A-C-CTA-A-CACA-----------------GTT-ACTGC-TTGGACCGTCTCC--TGTTAGGTCTAAAAGCTGGT-GG-C-ATTGCT-GGTGAGGA--T--TGAT-GCA-TAA-AAACGGCT-------------G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGT-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-TC--------GAA-TCG-ACGAA-AG--TT--GA--G-CCCGAGGC--A-ATTT--GGCCACCAG-ACAGTTGACATA-CCG-ATAC--CT--CACAA-AC-T--T--TTAACC----AGGAATTA--GA--------AT-TAGATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|15 : tgcccatcatggaagtgactcaagcaaatcaaattagatgctatatgggttttaattaatatagtcttttattatatttatataatagtttaattataattaagtatagtttacatcaccaagagtacaaacacttgaaaaatggagattagttgtgtataaagcaaagagaaacgttaccaaaattgtgacaaggtacgaatactcagtcccggacgcatcaccccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacTCGACA-AAA-CGAA-TTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCGA--AGTCT--T-CTGGT--AC-T--GGAGC----------------------C-G-CT-GCAAA--A---G--CAAC-G---GCGGGT-C-A-CGTTGCTGT--AGCGTCTAA-GTA--TGT--CCGA-AC-CT-C-GTG-AT-C-GA-G-CGGGCTC-AGTTCAGCA-C---G-TG-TTGAGG-------------------------------GTC-----GTCC-AC-GC-C-----G------TGG--------TCG-T-C-C-T-CCAC-C-----C---A---A--GC-TGGG--CACCTAA--TGTTAGGTCTAAAGGCTGGC-GG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CC--------GAA-TCG-GCGAA-TG--GT--GA--G-CCCGAGGC--A-ATTT--GGCCACCAG-ACAGTTGACATA-CCG-ATAC--CT--CACAA-AC-T--T--TTAA----CTGGGAATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|16 : TCGACA-AAA-CGAA-TTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCGA--AGTCT--T-CTGGT--CC-T--GGAGC----------------------C-G-CT-GCAAA--AA--G--CAAC-G---GCGGGT-C-A-CGTTGCTGT--AGCGTCTAA-GTA--TGT--CCGA-AC-CT-C-GTG-AT-C-GA-G-CGGGCTC-AGTTCAGCG-C---G-TG-TTGAGG-------------------------------GTC-----GTCC-AC-GC-C-----G------TGG--------TCG-T-C-C-T-CCAC-C-----C---A---A--GC-TGGG--CACCTAA--TGTTAGGTCTAAAGGCTGGC-GG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CC--------GAA-TCG-GCGAA-TG--AT--GA--G-CCCAAGGC--A-ATTT--GGCCACCAG-ACAGTTGACATA-CCG-ATAC--CT--CACAA-AC-T--T--TTAA----CTGGGAATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|21 : TTGAGA-AAG-CGAA-TTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTA-GTCGA---GTCT--T-CT-GT--CT-T--GGGGG----------------------C-G-TT-GCAAATGC---G--CAAC-----GCGGGTCC-A-AGT-GCT-T--AGCGTCAAA-GCATGT-T--CGGA-AC-CT-C-GTG-TT-C-GA-G-GCGGCTCTTGTTCAGCA-C---G-TGTTTGAGG--G----TC-GT--------CCTCGCC-G-GGTC-----GCCC-TGTAC-C-----A--AAGCTGGGC--A-C-TTA-T-CACAT-TCGC-TATTCGC-------ACTGC-TTGGACCGTCTCC--TGTTAGGTCTGActca
gi|35 : ctgC-TTGGACCGTCTCC--TGTTAGGTCTGAAGACGGGC-GA-C-ATCGCT-GATGAG
gi|22 : TGAAGACTGGC-GA-C-ATCGCT-GATGAGGA--T--TGA--GCA-TAATAAA--GCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CC--------GAA-TGG-ACGAA-TG--TAAAGA--G-CCCGAGGC--A-ATTT--GGCCACAAG-ACAGTTGACATG-CTG-ATAC--CT--CACAA-AC-T--T--TTAACC----AGGAATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------CAA------------AAGG--GAT-T
gi|36 : GGC-GA-C-ATTGCT-GATGAGGA--T--TGAT-GCA-TAA-AA
gi|23 : TTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-GATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--TCG-CC--------GAA-TGG-ACGAA-TG--TT--GA--G-CCCAAGGC--A-ATTT--GGCCACAAG-ACAGTTGACGTG-CCG-ATAT--CT--CACAA-AC-T--T--TTAACC----AGGAATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-AT
gi|28 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CC--------G---TGGGACGAA-TG--TT--G---G-CC---GGGTCATATTT--GGC-ACAAGTACA-TTGACATG-C-G-ATAC--TTATCACGA-AC-T--T--TTAACCAG--AGGAATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCtct
gi|27 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CC--------G---TGGGACGAA-TG--TT--G---G-CC---GGGTCATATTT--GGC-ACAAGTACA-TTGACATG-C-G-ATAC--TTATCACGA-AC-T--T--TTAACCAG--AGGAATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCcta
gi|25 : AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG-----------GAA-TGGAACGAG------T--GA--GACCGGACAA--G-ATTT--GG-GGCAAG-AGAGT--GCA---GCG-ATA---CT--CA-GA-AC-TTGT--TTAACAGGCT----GTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-cta
gi|24 : aaagAT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG-----------GAA-TGGAACGAG------T--GA--GACCGGACAA--G-ATTT--GG-GGCAAG-AGAGT--GCA---GCG-ATA---CT--CA-GA-AC-TTGT--TTAACAGGCT----GTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tcctc
gi|26 : aaagTG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCGT--GCG-CC--------GAA-TGG-ACGAA-TG--TT--GA--G-CCCGAGGC--A-ATTT--GGCCACAAG-AC-GTTG-CA-G-CCG-ATAT--CT--TTCAC-AC-C--TTGTTAACC----AGGAATTA--GG---T-CGGAG-TATATCGA-TGT-CACT------TAA------------AAGG--GAT-TATT-------T-AGGA-TATGGAAAT-TAAATA-ATCtcctc
gi|29 : ttAGGAAGT-GGAATT--TGCGCAT--GCG-CC--------GAA-TCG-GCGAA-TG--TC--GA--G-CCCGAGGT--A-ATTC--GGCCACCAG-ATAGTTGACATA-CCG-ATAC--CT--CACAA-AC--------TGCCCAACCGTGAATTA--GG---TACACAG-TAAATCGA-TGT-CAA-----------------------------------T-------T-A-GA-TATGGAAAT-TAAATA-ATCctcat
gi|32 : CA-ATAC--CT--CACAA-AT-TG-C--CTAACC-GT---GAATTA--GG---TACACAG-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGGAAT-TAAATA-ATCctc
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|2 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|5 ): CACAACACCCCCACCCCATCACTCTGGTTGCGGGGGGTTATAAGATGCAATCGCAGAATATGATGTGCTAGCATGAACCGAGGGTCCTGACAAAGTGCAAATGATACGTATGACCTATAAATGAGACGAAATGTATAGCGATAGCACCCGTTATAATTACTGGTATAAGAAACTCGGGCGTATGTAAATTTGTTGAGTGAGCTTGCCCGGTAAGAAAAGTGCACCAAATTGCACCCCCCTTATGCAGGACAGGGGCCAGAACCCGTGACTCGAAGAATAATATTGGAGACACAGAAGGGCAAGGACATATATTATAAAGGGACAATATGCTCTGCCATCAGGCCAATGTGACATTCAGTGAAGAGGAGAGAGAGGAGGAGATAGGAGAGAGGACTTATCTGGTATTGGCCTTAAAGCATCCTGTATCGCGTACGTGGAAAAAGGACTATAAATGATAGGTTTAAGAAGAACTGCATTAGATATCAATTATGTAGAAACATAACACTGATGTTCAAGTTTACTGGAATTAAAGGGCACGAGTAAATCAGATAGAGACTAAGCCAAATGTTGTTTCCGTGAGAGGAAAAATGTACATAAAAAGGGAACAACAGTAAGCAGATTCGGAAAATGGTACAACAAACAGATTCTCAGATGGTACTATACTGCACACCAAATATCAGGCCTTTAGGTTCCTGGGGAAATTGGCAAATGGCAGGCACTCAAGCAATACAAGATAATTATATCAATAATTTGAGGTTTTTAAAATATAATATAGTT
Unaligned ( gi|7 ): GCAATCGACAGAATGACTGTGCTGTACGTTCATGACTCCGAGGTGCCTGACAATATGCACCTCAATATGATACTGTATTGAACTAGTAATAATGAGAAATTGTATTAGACATTACGCAACCCGAAACTTGGTATAATATGAGGTTGGGGCGATTGTTTTGTTGAGTTGATAGCTTGCCTCGCCGAAGAAAAGGCACATACCAAGTGCTACTTTTGTCCTCCTATGTCCGCTTATGCACGTGATGTCCGCGCCGAGAGAAAAATAATTTGAAGAACAAAGCAAGGAGCATTAATATATTCAACATTGGCCTCTCTCTGTCTAAGCGGCCGATGTGATTCTGTGCTGTTGAAGAGAGAGAGAGAGAGAGAAGAGATGGACTGGTACTGGTGCTAAAGCATACTTCGTGGATTACGTGGAATTACAGCACTATAACATATATGGTTTTTTTATAGACAACTGGCCACATTATGATACTAAAAGTCTAAAACGCAACTGAGTTCAGCACCGGAGTAGTCCACGTATAAGCTGCCAAGTGGTGTTCCTGAGGGAATAATGTGACAGAACAAAAAAACAACAGTATAGCAGAGATAAATAATGTCGTAAACATCACTTCTCCAGATTGGTACTCTGCACCAAATTTCAGGCCTTTAGGTTCCTGGGGAATTGTCCAAAGTGAGAGCCTAGTGTATAGCGGAGTTTTTAAAAT
Unaligned ( gi|8 ): GATGCAAGCATGACTGAGGTCTGACAAAGGGACAATGATACGTATGATAATGAGAAATGTCATGCGTAGCAACCGATACTGGTATAAAACCTCGGGCGATTTGTAAATTTGTTTAGTGAGCTTGCCTCGCGAAGAAGTGCACCAAATGCGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTTATGCACGGCATGGCCCTGAGAAGAAAAAAATTAAGAACAAAGCAGGACATATTAATATACAATGTGCCTCTGCCATCAGCCCATGTGCAGTGATGAGAGAGAGAGAGGACCTTAGCTGCTGGGCTAAGCATACTTCGTACGTGAAAAGACTATTAAATTGTATGGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTATAGCAGATTGTGAAATCGGTAAACTGTACCAGCGCCAAAATATCAGCTGAGTGCTTTACGATCCTCCTGAGGACAATTGGCCAACATGGAAGGCCACCTCAAAACAACCATTAGAGCAAATGGGCCTCAAGAATATGCAATTAGTTTTTATATATATTAAATATATATATATTTATATATATTTTTTTTGATATAGTTTAATATATAGGG
Unaligned ( gi|10 ): GCAATCGCAGAAATATGTCTATCTAGTGACCGAGGTCTACAAAGTGCACAATGATAACGTAAACCTATAAATGAGAAATGTATGCATAAGCAACCCGGATACTGTATAAAACTTCGGGCATGAAATGTGTTTTATGACTGCCTCGCCGAAGAAGAAATGCACAACAAAGCACCCCCCCCCCTTATGCACGCTATGCCCCGAGAAAAAAATTGAAACAAATATCGAGTGTCAGTGATAGTGAAGTTAACAATGTGCCTCTGCAAATCACCCATTTGCATGTGTGAAGAGAAGAGAGAAGATAGACCTTAACTTTGCTAAAGCATACTTAACGTTGTTGAAAAAGACTAAAATTATATGAAACTGCGTTTACAAACATTCACCATACTGATGTTCAGCCGAGTATCAGTAACTGGCCAATTTCCTGAGAATAATGTACAAAAAAACAGTATAGTCGATTTGAAATTAACCACTGAACACGTCTCCAGACTGTTACCTGCCATAATATCAGGGACTGGCCTTTAGGTTCCTGAGGAAATTGGCCAATGGAAGGCACTCAAGCAAAAAATTAGATGTAATATGGGTTTTTAAAATATATTATATAGTTTGATCTATTTTTTTTATATATATATATATATATATA
Unaligned ( gi|18 ): TATAAATGAGAAATGTATGCATAGCAACCCAATATTGGTATGAAACTCGGGGCGACTATAAATTTGTTTAGTGAGCTTGCCTCGCGAAAGAAAGTGCACCAAATGCACACACACCCCTTATGCACAGCATGGCCCCGAGAAGAAAAAATTGAGAACAAAGGCAGGGACATATAAATATACAATGTGCCTCTGCCATCAGCCCATGTGCATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGACTTACTGGTGGCTAAAGCATACTTCGTACATGGAAAAAGACTATAAATTGTATGGTTTAAGAAACTGCGTTATACAATACGGTTCACCATACTGA
Unaligned ( gi|19 ): GTGAGCATGATCCGAGGGTGCGGTCTTGACAAAGTGCACACATTGATGACCGATATGACCTATAAATGAGAAATGTACTATAGTACTGCTTTAGTCACCCCGATACTTCGCGTATGATACAATCGGGGGTCGATTGTTAATCTTGATTTAGTTGAGCTTTGCCTCGCTAAGCATAATCCGTGACAAGACCCCCCCTTATGCCATCCGGCATGACCCCGAGATAAGAAAGCAAAGAAAAATATTTGCAGAACAAAGCAGACATATAAATATACCAATGTGCCTCTCTGCCATCAGCCATTGCTATGTGAAGAGAGATACGAGA
Unaligned ( gi|30 ): ACCCCCTCCCACTTATGTAGGGCATGGCCCGAGAAGTAAAAATCAAATGAGAACAAAGGCAGGAAATATAGATACACAATGTGCCCCTGCCATCATTGCCCATGTG
Unaligned ( gi|31 ): TGGAAACTGCGTTACACGTATCAGTTGTCCATACTGATGCTCTGTGCCAATTATCAGGAGCTGGCCTGTGTGGTTCCTGAGAAAAAATGTGACAGAAAT
Unaligned ( gi|33 ): TGCGATATCGGTACCCGGACAGCATCACCCAACTTTCCAGTTGAAAGTCGACTGTCGTTGCCTCTGAAAG
Unaligned ( gi|34 ): ACTTTGGCTAAATGCATACTTTCTTACGTGGACAAAAGTACTATTAAATTGTCATGGTTT
Alignments
lowQualScore : 111111111 1111111111 22 11 2222222222222222222222 333333 1 111 11 111 11 111 222222222222222 111111111 222222222222 222222222222222 11 1 22222222222222 1111 11111 11 11 3333 111111111111
lowQualScore : 999999999 7777777777 5 5 8 44 3 3 3 3 9 3 6 555 6 9 3 3 11 44 9 44 6 88 7777777777777777777777 1 3 3 6 0 444444 44 44 6 3 6 77 77 0 0 3 1 3 3 3 3 222 7 3 88 44 4 111 4 2 8888 44 4 1 8 8 4 55 333 777777777777777 666666666 8 333333333333 4 4 888888888888888 3 4 55 88 1 3 6 3 3 00 55 3 7 7 3 6 3 4 66666666666666 4 4 2 0 2 33 5 2 66 7 66 5 5 2 5555 2 4 33 55 55 55 55555 2 33 33 33 11 66 4 2 1 2 66 33 66 0 2 4 22 2 8888 4 4 33 333 0 4 4 4 666666 0 111111111111 88 2 7777777 2 2 2 9 4
lowQualScore : ......... .......... . . . .. . . . . . . . ... . . . . .. .. . .. . .. ...................... . . . . . ...... .. .. . . . .. .. . . . . . . . . ... . . .. .. . ... . . .... .. . . . . . .. ... ............... ......... . ............ . . ............... . . .. .. . . . . . .. .. . . . . . . . .............. . . . . . .. . . .. . .. . . . .... . . .. .. .. .. ..... . .. .. .. .. .. . . . . .. .. .. . . . .. . .... . . .. ... . . . . ...... . ............ .. . ....... . . . . .
lowQualScore : 888888888 9999999999 0 0 0 66 1 1 1 1 2 1 2 111 2 2 1 1 55 22 2 22 2 55 3333333333333333333333 0 1 1 2 8 111111 22 22 2 1 2 22 99 5 9 6 4 6 6 6 6 111 3 6 55 11 0 000 0 5 5555 55 0 4 0 0 0 55 555 444444444444444 000000000 0 888888888888 0 0 222222222222222 6 3 00 33 0 3 7 3 3 00 00 6 3 3 6 0 2 0 99999999999999 0 0 7 8 4 77 0 5 99 5 99 0 0 5 6666 5 7 22 66 11 66 33333 4 22 22 22 22 55 7 4 8 2 11 11 11 8 2 4 88 2 8888 4 4 11 999 6 4 4 4 444444 5 444444444444 33 2 6666666 4 4 4 4 7
consensus : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--CC-TGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-A-AACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--T--TGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG-GA-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
Reference ( family-1263 ) : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AN-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TNTAC-CN--AA--------GCT---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--CN-TGTTAGGTCTGAAGACNGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-A-AA-GGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--T--TGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACCAG--AG-GA-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|11 : TTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAATA-AA-G--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-AT-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--T--T-A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA-GA-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-
gi|12 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagTTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAATA-AA-G--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-AT-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--T--T-A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA-GA-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-atctc
gi|13 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagGCTTCG---CC--A--ATTT-----C---CAT-TCGC-TGCT-GTT--GAC-A-AAA-CG-AATTCG--A-T-ACAGC--TCCT-GAATGGG-CG---GTCG-A--G-TCT--T-----------T--GG----------------------GGAG-T-TT-GCATT--ATGTG--CA--AT-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCGG-GATTCT-CTGTG-ATTC-GG-A-TGGGCTCC--TTCAGCA-CGA--TGTT-GAGGG----TCG---CC-CACCG-G-G-TC--GCCC--GTACACC--AA--------GCT---------G-GGC--A-C--TA-T-CACAT-CCGC-TATT-------CC-ACTGC-TTTGACCGTCTCGCC-TGTT--TTCTGAAGACGGGCCGA-C-ATCGCT-GATGAGAA--T--TGAT-GCA-TAA-T-AA-GAGTG-TCACT--CA--------TC-AGAA-TGTTTA-AAGC-T--TT--------ATAA---AA--C-TGGGT-C----------AATGTAAGT--GAA-C--TGCGCAT--TAC-CCAAAAGTGGGATCAGCG-G-TGACT--TTA--G-CCGAGGCA--ATTT--GGCCACAAG-ACAGTT-ACATCGCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG-GA-ATTA--GG---TACCCAG---AATCGA-TGT-CAAT------T-A------------AAGG--GAT-TATT-------T-A-GATTATGGAAAT-TAAATA-ATCatctc
gi|14 : tgaaagttgactgtcattgcctcgtaagcttgtgcactcttaggcaaataGCTTCAG--CC--A--ATTT-----C-A-CTT-TCGT-TGCT-ATTTCGAC-A-AAA-CG-TATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGCC-G-TT-GCAAA--A---G--CA--AC-A-ACGGGTC-AT-GTGGCTGT--AGCGTCTAA-GCAT--TCCG-AA-CCT-C-GTG-G-TC-GA-G-TGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCCT-CCT-CGCCGTG-G-TC--GTCC-TCTAC-CG--AA--------GCT---------G-GGC--A-C-TTG-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--CA-TGTTAGGTCTAAAGGCTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-A-AACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGC-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----ACGAA-TG--T--TGA--GCCCGAGGGA--ATTT--GGCCACCAG-ACAGTTGACAT-CCCG-ATAC--C--T--CACAA-AC-T--T-TTAACCAGCTAG-AA-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAGT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATCctca
gi|15 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--AC-T--GG----------------------AGCC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCA-CG---TGTT-GA--------------------G-G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--AA-TGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-A-AACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--G--TGA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG-GA-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATC
gi|16 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--CC-T--GG----------------------AGCC-G-CT-GCAAA--AA--G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCG-CG---TGTT-GA--------------------G-G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--AA-TGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-A-AACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--A--TGA--GCCCAAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG-GA-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|17 : GCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GACAA-AAA-TG-AATTCGCTG-T-ACAGC--CGCT-GA-T-GG-GTTAGGTCGAA--GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-GTTT-GCAAA--ATGCG--CA--ACTT-GCGGATC-AA-GTGGCCGctca
gi|20 : ccacaatggaaggcactacaagcaaaattagatgcaatatgggtttttaaaaatacagagatatatagttcatctatttttttttttttaaattatagttctgaatatataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagttgaaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaataGCT-ATTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GATCT--C-CCGGT--CC-T--GG----------------------GGGC-G-TT-GCAAA--AAC-G--CA--AC-G-GCAGGT--AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCA-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GT
gi|21 : aaagaaacgtaccaaaattgaacaggtgcgatatcggtccccggacagcatcacccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-GTT--GAG-A-AAG-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAG-TCG-A--G-TCT--T-CTG-T--CT-T--GG----------------------GGGC-G-TT-GCAAATGC---G--CA--AC-G--CGGGTCCAA-GTG-CT-T--AGCGTCAAA-GCAT-GTTCGGAA-CCT-C-GTG-T-TC-GA-G-GCGGCTCTTGTTCAGCA-CG---TGTTTGAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CA--AA--------GCT---------G-GGC--A-C-TTA-T-CACAT-TCGC-TATTCGC-------ACTGC-TTGGACCGTCT--CC-TGTTAGGTCTGA
gi|22 : TGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGA--GCA-TAA-T-AA-AGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TAAAGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCTG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG-GA-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------CAA------------AAGG--GAT-T
gi|23 : TTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-GA-TT---AA-AAAGGAAGT-AGAATT--TGCGCAT--TCG-CCGAA--TGG-----ACGAA-TG--T--TGA--GCCCAAGGCA--ATTT--GGCCACAAG-ACAGTTGACGT-GCCG-ATAT--C--T--CACAA-AC-T--T-TTAACC----AG-GA-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-AT
gi|24 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CA-TTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG--------TGA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAAC-----AG-GCTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tct
gi|25 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CA-TTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG--------TGA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAAC-----AG-GCTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tcctc
gi|26 : TG-GC-A--GTAAT-GAA--C-TGCGC-CA-TT---AA-AAAGGAAGT-AGAATT--TGCGCGT--GCG-CCGAA--TGG-----ACGAA-TG--T--TGA--GCCCGAGGCA--ATTT--GGCCACAAG-AC-GTTG-CA--GCCG-ATAT--CTTT--CAC-A-CC-T--TGTTAACC----AG-GA-ATTA--GG---T-CGGAG-TATATCGA-TGT-CACT------TAA------------AAGG--GAT-TATT-------T-AGGA-TATGGAAAT-TAAATA-ATCtcctc
gi|27 : ttA-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCA-T----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--T--TGG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACCAG--AG-GA-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCctcat
gi|28 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCA-T----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--T--TGG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACCAG--AG-GA-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCcta
gi|29 : AGGAAGT-GGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--T--CGA--GCCCGAGGTA--ATTC--GGCCACCAG-ATAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-TG-C-CCAACC-----GTGA-ATTA--GG---TACACAG-TAAATCGA-TGT-CAA-----------------------------------T-------T-A-GA-TATGGAAAT-TAAATA-ATCcta
gi|3 : GCTTCGG--CC--A--CTTT-----C-AACTTGTCGCATGCT-GTT--GAC-A-AAA-CGTAATTCGCTG-TCACCGCTAACCT-GA-TGGGCGGTAGGTCG-A--GGTCTGTTGTTGGTTCCC-T--GG----------------------GGGGAG-TT-GCATA--T---GTGCA--AT-G-GCGG--T-AA-GTGGCTGTCGGGCGTCAAAAGCATTGTCAG-GA-TCT-C-GTG-T-TC-GA-GGTGGGCTC--GTCCAGCAACG---TGTT-GAGG-----TCGT-CCTACACTG-G-G-TCTCGCCCGTGTAC-CA--AAAGCCCCCCGCCCTGGGGAGGG-GGCCAA-C-TTA-TACACATTCCG--TATTCT----ACTCAATGC-TTG-ACCGTCT--CC-TGTTAGGTCTGAAGACGGG-CGA-CAATCGCTGGATGAGAA--T--TGCTAGCA-TAA-ATAA-AGCTG-TCACTC-CA--GACCGTTCAAGAATTGTTTATAAGCATGGGTG-GCAA--GTAAT-GAA--C-TGCGC-CT-T-------AAAGGAAGT--GAATTAATGCGCATAAGCGACAGAG--TGG-----ACAAA-TG--T--TTGCCGCCAGAGGC---ATTT--GGCC-CAAG-ACAGTTGACAT-G-CG-ATAC--C--T--CACGATAC-TG-T-TTAACC----AG-GA-ATTA--AGGTATACGCAG-TAAATCGA-TGT-CAAT------TAA------------AGGG--AATATATT-------TGA-GA-TATGGAAAT-TAAATA-ATCctc
gi|32 : ttatatcataatttaaatacatgttgttgtgtaacatacaagaggtacaacacatgataaatgaaattatgagaatattaccgcgttttaaaaggaaagaagacgtacaaaatttgaacaggtgcgatattggtcccctgacagcagtcaccgcagctttccagtttcgaaagtctgactgtcatgcctcgaaagcttgtgcacacttagcagaaaaaaataCA-ATAC--C--T--CACAA-AT-TG-C-CTAACC-----GTGA-ATTA--GG---TACACAG-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGGAAT-TAAATA-ATCctcat
gi|35 : C-TTGGACCGTCT--CC-TGTTAGGTCTGAAGACGGG-CGA-C-ATCGCT-GATGAGctc
gi|36 : GG-CGA-C-ATTGCT-GATGAGGA--T--TGAT-GCA-TAA-A-A
gi|4 : TTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GGTCT--T-CTGGT--CC-T--GG----------------------GACC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-TTTGCTGT--AGCGTCTAA-GAAT-TTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCGT-CCT-CGCCGTG-G-TC--GTCC-TCTCC-CC--AA--------GCT---------G-GGG--A-C-CTA-A-CACA-----------------GTT-ACTGC-TTGGACCGTCT--CC-TGTTAGGTCTAAAAGCTGG-TGG-C-ATTGCT-GGTGAGGA--T--TGAT-GCA-TAA-A-AACGGCT-------------G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGT-CA-T----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-TCGAA--TCG-----ACGAA-AG--T--TGA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG-GA-ATTA--GA--------AT-TAGATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|6 : tgcccatcatggaagtgactcaagcaaatcaaattagatgctatatgggttttaattaatatagtcttttattatatttatataatagtttaattataattaagtatagtttacatcaccaagagtacaaacacttgaaaaatggagattagttgtgtataaagcaaagagaaacgttaccaaaattgtgacaaggtacgaatactcagtcccggacgcatcaccccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacaGCTTCGG--CCTAG--ATTTTCCGAC-A-CTT-TCGC-TGCT-GTT-CGAC-AGAAA-CG-GAATCG-TGGTGACGAC--GCC--GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CT-T--GGGGCGAGGTCGTGCTGGTCTTTGGGGC-G-TTGGCACA--AT--G--CGTCACGG-GCGGGTCAAT-GTGGCTGT--Actcat
gi|9 : acttagctggtgctttaaagcatacttcgtacgtggaaaagaactataaattgtatggattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaacgagtatagcagaggtaatgaaagggtgaccgatgaggacgtctccaggactgggtacttcttgcggccaaatatcaggagctggccttaggttcctgaggatttggcaaaatggaaggcaaactcagcaagaaattaaatgatgctgatatgggtttttaaaatataaaattgagttgtatattattttgttatagtagtttaattatagtagggtaacatacccaaaaggtttactgaacaacttgagtaaagaatttgaaatgtgtgtatggaagaaggaaagaaacgtaccagaagattgaaacaggtcgatatcgatggccatgaacaagcatcacccagtttccccagttgaaagtactgtcgttgcctcggaagctcgtgcactcttagGCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GAC-A-AAAATG-AATTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCG-AA-GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-G-TTTGCAAA--ATGCG--CA--AC-TTGCGGATC-AA-GTGGCCGTT-AGCGTCAAA-GCCT-GTCGG-AA-CCTTC-GTA-G-TC-GACGTCGAG-TCT----CAGCA-CGCCATGTT-GACGGCGGCTCGTTCCT-CGCCG-G-GATC--GCCC-TTTAC-CCCCAA--------GCT---------G-GGC--AAC-TTA-T-CA-AT-CCGCCTATT-TCGGTAC--ACCGCGTTGGACCGTCT--CC-T---AGGT-TGAAGACTTG-CGA-C-ATTGCT-GATGAGGA--TATTGAT-GCA-TAA-A-AA-AACTGGTCACT--CACAG-----TC-AGCA-GATTTA-A-GCCT--GTG-GC-A--GTAAAAGAA--C-GGCGA-CA-T----AATAAAGGAAGT-AGAATT--TGTGCATT-GGG-CCGAAA-TGG-----ACGAAATG--T--TG---GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCGTATAC--C--T--CACAA-AC-T--T-TTAATCAG---G-AA-ATTATGAG---TACGCAG-TAAATCGA-TGT-CAATAAAAAATAAAAAAAAAAAAATAAGGT-AAT-TATTTTAGATAT-A-GA-TATGGAAAT-TAAATA-ATCt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|2 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|5 ): CACAACACCCCCACCCCATCACTCTGGTTGCGGGGGGTTATAAGATGCAATCGCAGAATATGATGTGCTAGCATGAACCGAGGGTCCTGACAAAGTGCAAATGATACGTATGACCTATAAATGAGACGAAATGTATAGCGATAGCACCCGTTATAATTACTGGTATAAGAAACTCGGGCGTATGTAAATTTGTTGAGTGAGCTTGCCCGGTAAGAAAAGTGCACCAAATTGCACCCCCCTTATGCAGGACAGGGGCCAGAACCCGTGACTCGAAGAATAATATTGGAGACACAGAAGGGCAAGGACATATATTATAAAGGGACAATATGCTCTGCCATCAGGCCAATGTGACATTCAGTGAAGAGGAGAGAGAGGAGGAGATAGGAGAGAGGACTTATCTGGTATTGGCCTTAAAGCATCCTGTATCGCGTACGTGGAAAAAGGACTATAAATGATAGGTTTAAGAAGAACTGCATTAGATATCAATTATGTAGAAACATAACACTGATGTTCAAGTTTACTGGAATTAAAGGGCACGAGTAAATCAGATAGAGACTAAGCCAAATGTTGTTTCCGTGAGAGGAAAAATGTACATAAAAAGGGAACAACAGTAAGCAGATTCGGAAAATGGTACAACAAACAGATTCTCAGATGGTACTATACTGCACACCAAATATCAGGCCTTTAGGTTCCTGGGGAAATTGGCAAATGGCAGGCACTCAAGCAATACAAGATAATTATATCAATAATTTGAGGTTTTTAAAATATAATATAGTT
Unaligned ( gi|7 ): GCAATCGACAGAATGACTGTGCTGTACGTTCATGACTCCGAGGTGCCTGACAATATGCACCTCAATATGATACTGTATTGAACTAGTAATAATGAGAAATTGTATTAGACATTACGCAACCCGAAACTTGGTATAATATGAGGTTGGGGCGATTGTTTTGTTGAGTTGATAGCTTGCCTCGCCGAAGAAAAGGCACATACCAAGTGCTACTTTTGTCCTCCTATGTCCGCTTATGCACGTGATGTCCGCGCCGAGAGAAAAATAATTTGAAGAACAAAGCAAGGAGCATTAATATATTCAACATTGGCCTCTCTCTGTCTAAGCGGCCGATGTGATTCTGTGCTGTTGAAGAGAGAGAGAGAGAGAGAAGAGATGGACTGGTACTGGTGCTAAAGCATACTTCGTGGATTACGTGGAATTACAGCACTATAACATATATGGTTTTTTTATAGACAACTGGCCACATTATGATACTAAAAGTCTAAAACGCAACTGAGTTCAGCACCGGAGTAGTCCACGTATAAGCTGCCAAGTGGTGTTCCTGAGGGAATAATGTGACAGAACAAAAAAACAACAGTATAGCAGAGATAAATAATGTCGTAAACATCACTTCTCCAGATTGGTACTCTGCACCAAATTTCAGGCCTTTAGGTTCCTGGGGAATTGTCCAAAGTGAGAGCCTAGTGTATAGCGGAGTTTTTAAAAT
Unaligned ( gi|8 ): GATGCAAGCATGACTGAGGTCTGACAAAGGGACAATGATACGTATGATAATGAGAAATGTCATGCGTAGCAACCGATACTGGTATAAAACCTCGGGCGATTTGTAAATTTGTTTAGTGAGCTTGCCTCGCGAAGAAGTGCACCAAATGCGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTTATGCACGGCATGGCCCTGAGAAGAAAAAAATTAAGAACAAAGCAGGACATATTAATATACAATGTGCCTCTGCCATCAGCCCATGTGCAGTGATGAGAGAGAGAGAGGACCTTAGCTGCTGGGCTAAGCATACTTCGTACGTGAAAAGACTATTAAATTGTATGGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTATAGCAGATTGTGAAATCGGTAAACTGTACCAGCGCCAAAATATCAGCTGAGTGCTTTACGATCCTCCTGAGGACAATTGGCCAACATGGAAGGCCACCTCAAAACAACCATTAGAGCAAATGGGCCTCAAGAATATGCAATTAGTTTTTATATATATTAAATATATATATATTTATATATATTTTTTTTGATATAGTTTAATATATAGGG
Unaligned ( gi|10 ): GCAATCGCAGAAATATGTCTATCTAGTGACCGAGGTCTACAAAGTGCACAATGATAACGTAAACCTATAAATGAGAAATGTATGCATAAGCAACCCGGATACTGTATAAAACTTCGGGCATGAAATGTGTTTTATGACTGCCTCGCCGAAGAAGAAATGCACAACAAAGCACCCCCCCCCCTTATGCACGCTATGCCCCGAGAAAAAAATTGAAACAAATATCGAGTGTCAGTGATAGTGAAGTTAACAATGTGCCTCTGCAAATCACCCATTTGCATGTGTGAAGAGAAGAGAGAAGATAGACCTTAACTTTGCTAAAGCATACTTAACGTTGTTGAAAAAGACTAAAATTATATGAAACTGCGTTTACAAACATTCACCATACTGATGTTCAGCCGAGTATCAGTAACTGGCCAATTTCCTGAGAATAATGTACAAAAAAACAGTATAGTCGATTTGAAATTAACCACTGAACACGTCTCCAGACTGTTACCTGCCATAATATCAGGGACTGGCCTTTAGGTTCCTGAGGAAATTGGCCAATGGAAGGCACTCAAGCAAAAAATTAGATGTAATATGGGTTTTTAAAATATATTATATAGTTTGATCTATTTTTTTTATATATATATATATATATATA
Unaligned ( gi|18 ): TATAAATGAGAAATGTATGCATAGCAACCCAATATTGGTATGAAACTCGGGGCGACTATAAATTTGTTTAGTGAGCTTGCCTCGCGAAAGAAAGTGCACCAAATGCACACACACCCCTTATGCACAGCATGGCCCCGAGAAGAAAAAATTGAGAACAAAGGCAGGGACATATAAATATACAATGTGCCTCTGCCATCAGCCCATGTGCATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGACTTACTGGTGGCTAAAGCATACTTCGTACATGGAAAAAGACTATAAATTGTATGGTTTAAGAAACTGCGTTATACAATACGGTTCACCATACTGA
Unaligned ( gi|19 ): GTGAGCATGATCCGAGGGTGCGGTCTTGACAAAGTGCACACATTGATGACCGATATGACCTATAAATGAGAAATGTACTATAGTACTGCTTTAGTCACCCCGATACTTCGCGTATGATACAATCGGGGGTCGATTGTTAATCTTGATTTAGTTGAGCTTTGCCTCGCTAAGCATAATCCGTGACAAGACCCCCCCTTATGCCATCCGGCATGACCCCGAGATAAGAAAGCAAAGAAAAATATTTGCAGAACAAAGCAGACATATAAATATACCAATGTGCCTCTCTGCCATCAGCCATTGCTATGTGAAGAGAGATACGAGA
Unaligned ( gi|30 ): ACCCCCTCCCACTTATGTAGGGCATGGCCCGAGAAGTAAAAATCAAATGAGAACAAAGGCAGGAAATATAGATACACAATGTGCCCCTGCCATCATTGCCCATGTG
Unaligned ( gi|31 ): TGGAAACTGCGTTACACGTATCAGTTGTCCATACTGATGCTCTGTGCCAATTATCAGGAGCTGGCCTGTGTGGTTCCTGAGAAAAAATGTGACAGAAAT
Unaligned ( gi|33 ): TGCGATATCGGTACCCGGACAGCATCACCCAACTTTCCAGTTGAAAGTCGACTGTCGTTGCCTCTGAAAG
Unaligned ( gi|34 ): ACTTTGGCTAAATGCATACTTTCTTACGTGGACAAAAGTACTATTAAATTGTCATGGTTT
Alignments
lowQualScore : 111111111 1111111111 22 11 2222222222222222222222 333333 1 111 11 111 11 111 222222222222222 1111111111 222222222222 222222222222222 11 1 22222222222222 1111 11111 11 11 111111111111
lowQualScore : 999999999 7777777777 5 5 8 44 3 3 3 3 9 3 6 555 6 9 3 3 11 44 9 44 6 88 7777777777777777777777 1 3 3 6 0 444444 44 44 6 3 3 9 77 0 0 3 1 3 3 3 3 222 7 3 88 44 4 111 4 8888 44 4 1 8 8 4 55 222 666666666666666 7777777777 8 333333333333 4 4 888888888888888 3 4 55 7 1 3 6 3 3 00 55 3 7 3 2 3 4 66666666666666 4 4 2 0 2 33 5 2 66 7 66 5 5 8888 2 4 33 55 55 55 55555 2 33 33 33 11 66 4 2 1 2 66 33 66 0 2 4 22 2 4444 66 2 4 33 333 0 4 4 4 666666 0 111111111111 88 2 7777777 2 2 2 9 4
lowQualScore : ......... .......... . . . .. . . . . . . . ... . . . . .. .. . .. . .. ...................... . . . . . ...... .. .. . . . . .. . . . . . . . . ... . . .. .. . ... . .... .. . . . . . .. ... ............... .......... . ............ . . ............... . . .. . . . . . . .. .. . . . . . . .............. . . . . . .. . . .. . .. . . .... . . .. .. .. .. ..... . .. .. .. .. .. . . . . .. .. .. . . . .. . .... .. . . .. ... . . . . ...... . ............ .. . ....... . . . . .
lowQualScore : 888888888 9999999999 0 0 0 66 1 1 1 1 2 1 2 111 2 2 1 1 55 22 2 22 2 55 3333333333333333333333 0 1 1 2 8 111111 22 22 2 1 1 2 99 5 9 6 4 6 6 6 6 777 3 6 55 11 0 000 0 5555 55 0 4 0 0 0 55 222 111111111111111 2222222222 0 888888888888 0 0 222222222222222 6 3 00 3 9 3 7 3 3 00 00 6 3 6 5 2 0 99999999999999 0 0 7 8 4 77 0 5 99 5 99 0 0 1111 5 7 22 66 11 66 33333 4 22 22 22 22 55 7 4 8 2 11 11 11 8 2 4 88 2 7777 11 2 4 11 999 6 4 4 4 444444 5 444444444444 33 2 6666666 4 4 4 4 7
consensus : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
Reference ( family-1263 ) : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|11 : TTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-
gi|12 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagTTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-atctc
gi|13 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagGCTTCG---CC--A--ATTT-----C---CAT-TCGC-TGCT-GTT--GAC-A-AAA-CG-AATTCG--A-T-ACAGC--TCCT-GAATGGG-CG---GTCG-A--G-TCT--T-----------T--GG----------------------GGAG-T-TT-GCATT--ATGTG--CA--AT-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCGG-GATTCT-CTGTG-ATTC-GG-A-TGGGCTCC--TTCAGCA-CGA--TGTT-GAGGG----TCG---CC-CACCG-G-G-TC--GCCC--GTACACC--AA--------GCT---------G-GGC--A-C--TA-T-CACAT-CCGC-TATT-------CC-ACTGC-TTTGACCGTCTCGC-CTGTT--TTCTGAAGACGGGCCGA-C-ATCGCT-GATGAGAA--T--TGAT-GCA-TAA-TAA-GAGTG-TCACT--CA--------TC-AGAA-TGTTTA-AAGC-T--TT--------ATAA---AA--C-TGGGT-C---------AATGTAAGT--GAA-C--TGCGCAT--TAC-CCAAAAGTGGGATCAGCG-G-TGACTT--TA--G-CCGAGGCA--ATTT--GGCCACAAG-ACAGTT-ACATCGCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACCCAG---AATCGA-TGT-CAAT------T-A------------AAGG--GAT-TATT-------T-A-GATTATGGAAAT-TAAATA-ATCatctc
gi|14 : tgaaagttgactgtcattgcctcgtaagcttgtgcactcttaggcaaataGCTTCAG--CC--A--ATTT-----C-A-CTT-TCGT-TGCT-ATTTCGAC-A-AAA-CG-TATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGCC-G-TT-GCAAA--A---G--CA--AC-A-ACGGGTC-AT-GTGGCTGT--AGCGTCTAA-GCAT--TCCG-AA-CCT-C-GTG-G-TC-GA-G-TGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCCT-CCT-CGCCGTG-G-TC--GTCC-TCTAC-CG--AA--------GCT---------G-GGC--A-C-TTG-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-ATGTTAGGTCTAAAGGCTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----ACGAA-TG--TT--GA--GCCCGAGGGA--ATTT--GGCCACCAG-ACAGTTGACAT-CCCG-ATAC--C--T--CACAA-AC-T--T-TTAACCAGCTAG--A-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAGT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATCctca
gi|15 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--AC-T--GG----------------------AGCC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCA-CG---TGTT-GAG---------------------G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--GT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATC
gi|16 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--CC-T--GG----------------------AGCC-G-CT-GCAAA--AA--G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCG-CG---TGTT-GAG---------------------G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--AT--GA--GCCCAAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|17 : GCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GACAA-AAA-TG-AATTCGCTG-T-ACAGC--CGCT-GA-T-GG-GTTAGGTCGAA--GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-GTTT-GCAAA--ATGCG--CA--ACTT-GCGGATC-AA-GTGGCCGctca
gi|20 : ccacaatggaaggcactacaagcaaaattagatgcaatatgggtttttaaaaatacagagatatatagttcatctatttttttttttttaaattatagttctgaatatataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagttgaaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaataGCT-ATTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GATCT--C-CCGGT--CC-T--GG----------------------GGGC-G-TT-GCAAA--AAC-G--CA--AC-G-GCAGGT--AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCA-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GT
gi|21 : aaagaaacgtaccaaaattgaacaggtgcgatatcggtccccggacagcatcacccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-GTT--GAG-A-AAG-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAG-TCG-A--G-TCT--T-CTG-T--CT-T--GG----------------------GGGC-G-TT-GCAAATGC---G--CA--AC-G--CGGGTCCAA-GTG-CT-T--AGCGTCAAA-GCAT-GTTCGGAA-CCT-C-GTG-T-TC-GA-G-GCGGCTCTTGTTCAGCA-CG---TGTTTGAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CA--AA--------GCT---------G-GGC--A-C-TTA-T-CACAT-TCGC-TATTCGC-------ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGA
gi|22 : TGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGA--GCA-TAATAAA--GCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TAAAGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCTG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------CAA------------AAGG--GAT-T
gi|23 : TTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-GATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--TCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCAAGGCA--ATTT--GGCCACAAG-ACAGTTGACGT-GCCG-ATAT--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-AT
gi|24 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tct
gi|25 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tcctc
gi|26 : TG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCGT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-AC-GTTG-CA--GCCG-ATAT--CTTT--CAC-A-CC-T--TGTTAACC----AG--G-A-ATTA--GG---T-CGGAG-TATATCGA-TGT-CACT------TAA------------AAGG--GAT-TATT-------T-AGGA-TATGGAAAT-TAAATA-ATCtcctc
gi|27 : ttA-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCctcat
gi|28 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCcta
gi|29 : AGGAAGT-GGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--TC--GA--GCCCGAGGTA--ATTC--GGCCACCAG-ATAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-TG-C-CCAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAA-----------------------------------T-------T-A-GA-TATGGAAAT-TAAATA-ATCcta
gi|3 : GCTTCGG--CC--A--CTTT-----C-AACTTGTCGCATGCT-GTT--GAC-A-AAA-CGTAATTCGCTG-TCACCGCTAACCT-GA-TGGGCGGTAGGTCG-A--GGTCTGTTGTTGGTTCCC-T--GG----------------------GGGGAG-TT-GCATA--T---GTGCA--AT-G-GCGG--T-AA-GTGGCTGTCGGGCGTCAAAAGCATTGTCAG-GA-TCT-C-GTG-T-TC-GA-GGTGGGCTC--GTCCAGCAACG---TGTT-GAGG-----TCGT-CCTACACTG-G-G-TCTCGCCCGTGTAC-CA--AAAGCCCCCCGCCCTGGGGAGGG-GGCCAA-C-TTA-TACACATTCCG--TATTCT----ACTCAATGC-TTG-ACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-CAATCGCTGGATGAGAA--T--TGCTAGCA-TAA-ATAAAGCTG-TCACTC-CA--GACCGTTCAAGAATTGTTTATAAGCATGGGTG-GCAA--GTAAT-GAA--C-TGCGC-CTT-------AAAGGAAGT--GAATTAATGCGCATAAGCGACAGAG--TGG-----ACAAA-TG--TT--TGCCGCCAGAGGC---ATTT--GGCC-CAAG-ACAGTTGACAT-G-CG-ATAC--C--T--CACGATAC-TG-T-TTAACC----AG--G-A-ATTA--AGGTATACGCAG-TAAATCGA-TGT-CAAT------TAA------------AGGG--AATATATT-------TGA-GA-TATGGAAAT-TAAATA-ATCctc
gi|32 : ttatatcataatttaaatacatgttgttgtgtaacatacaagaggtacaacacatgataaatgaaattatgagaatattaccgcgttttaaaaggaaagaagacgtacaaaatttgaacaggtgcgatattggtcccctgacagcagtcaccgcagctttccagtttcgaaagtctgactgtcatgcctcgaaagcttgtgcacacttagcagaaaaaaataCA-ATAC--C--T--CACAA-AT-TG-C-CTAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGGAAT-TAAATA-ATCctcat
gi|35 : C-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-C-ATCGCT-GATGAGctc
gi|36 : GG-CGA-C-ATTGCT-GATGAGGA--T--TGAT-GCA-TAA-AA
gi|4 : TTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GGTCT--T-CTGGT--CC-T--GG----------------------GACC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-TTTGCTGT--AGCGTCTAA-GAAT-TTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCGT-CCT-CGCCGTG-G-TC--GTCC-TCTCC-CC--AA--------GCT---------G-GGG--A-C-CTA-A-CACA-----------------GTT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTAAAAGCTGG-TGG-C-ATTGCT-GGTGAGGA--T--TGAT-GCA-TAA-AAACGGCT-------------G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGT-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-TCGAA--TCG-----ACGAA-AG--TT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GA--------AT-TAGATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|6 : tgcccatcatggaagtgactcaagcaaatcaaattagatgctatatgggttttaattaatatagtcttttattatatttatataatagtttaattataattaagtatagtttacatcaccaagagtacaaacacttgaaaaatggagattagttgtgtataaagcaaagagaaacgttaccaaaattgtgacaaggtacgaatactcagtcccggacgcatcaccccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacaGCTTCGG--CCTAG--ATTTTCCGAC-A-CTT-TCGC-TGCT-GTT-CGAC-AGAAA-CG-GAATCG-TGGTGACGAC--GCC--GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CT-T--GGGGCGAGGTCGTGCTGGTCTTTGGGGC-G-TTGGCACA--AT--G--CGTCACGG-GCGGGTC-AATGTGGCTGT--Actcat
gi|9 : acttagctggtgctttaaagcatacttcgtacgtggaaaagaactataaattgtatggattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaacgagtatagcagaggtaatgaaagggtgaccgatgaggacgtctccaggactgggtacttcttgcggccaaatatcaggagctggccttaggttcctgaggatttggcaaaatggaaggcaaactcagcaagaaattaaatgatgctgatatgggtttttaaaatataaaattgagttgtatattattttgttatagtagtttaattatagtagggtaacatacccaaaaggtttactgaacaacttgagtaaagaatttgaaatgtgtgtatggaagaaggaaagaaacgtaccagaagattgaaacaggtcgatatcgatggccatgaacaagcatcacccagtttccccagttgaaagtactgtcgttgcctcggaagctcgtgcactcttagGCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GAC-A-AAAATG-AATTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCG-AA-GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-G-TTTGCAAA--ATGCG--CA--AC-TTGCGGATC-AA-GTGGCCGTT-AGCGTCAAA-GCCT-GTCGG-AA-CCTTC-GTA-G-TC-GACGTCGAG-TCT----CAGCA-CGCCATGTT-GACGGCGGCTCGTTCCT-CGCCG-G-GATC--GCCC-TTTAC-CCCCAA--------GCT---------G-GGC--AAC-TTA-T-CA-AT-CCGCCTATT-TCGGTAC--ACCGCGTTGGACCGTCT--C-CT---AGGT-TGAAGACTTG-CGA-C-ATTGCT-GATGAGGA--TATTGAT-GCA-TAA-AAA-AACTGGTCACT--CACAG-----TC-AGCA-GATTTA-A-GCCT--GTG-GC-A--GTAAAAGAA--C-GGCGA-CAT----AATAAAGGAAGT-AGAATT--TGTGCATT-GGG-CCGAAA-TGG-----ACGAAATG--TT--G---GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCGTATAC--C--T--CACAA-AC-T--T-TTAATC----AG--GAA-ATTATGAG---TACGCAG-TAAATCGA-TGT-CAATAAAAAATAAAAAAAAAAAAATAAGGT-AAT-TATTTTAGATAT-A-GA-TATGGAAAT-TAAATA-ATCt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|2 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|5 ): CACAACACCCCCACCCCATCACTCTGGTTGCGGGGGGTTATAAGATGCAATCGCAGAATATGATGTGCTAGCATGAACCGAGGGTCCTGACAAAGTGCAAATGATACGTATGACCTATAAATGAGACGAAATGTATAGCGATAGCACCCGTTATAATTACTGGTATAAGAAACTCGGGCGTATGTAAATTTGTTGAGTGAGCTTGCCCGGTAAGAAAAGTGCACCAAATTGCACCCCCCTTATGCAGGACAGGGGCCAGAACCCGTGACTCGAAGAATAATATTGGAGACACAGAAGGGCAAGGACATATATTATAAAGGGACAATATGCTCTGCCATCAGGCCAATGTGACATTCAGTGAAGAGGAGAGAGAGGAGGAGATAGGAGAGAGGACTTATCTGGTATTGGCCTTAAAGCATCCTGTATCGCGTACGTGGAAAAAGGACTATAAATGATAGGTTTAAGAAGAACTGCATTAGATATCAATTATGTAGAAACATAACACTGATGTTCAAGTTTACTGGAATTAAAGGGCACGAGTAAATCAGATAGAGACTAAGCCAAATGTTGTTTCCGTGAGAGGAAAAATGTACATAAAAAGGGAACAACAGTAAGCAGATTCGGAAAATGGTACAACAAACAGATTCTCAGATGGTACTATACTGCACACCAAATATCAGGCCTTTAGGTTCCTGGGGAAATTGGCAAATGGCAGGCACTCAAGCAATACAAGATAATTATATCAATAATTTGAGGTTTTTAAAATATAATATAGTT
Unaligned ( gi|7 ): GCAATCGACAGAATGACTGTGCTGTACGTTCATGACTCCGAGGTGCCTGACAATATGCACCTCAATATGATACTGTATTGAACTAGTAATAATGAGAAATTGTATTAGACATTACGCAACCCGAAACTTGGTATAATATGAGGTTGGGGCGATTGTTTTGTTGAGTTGATAGCTTGCCTCGCCGAAGAAAAGGCACATACCAAGTGCTACTTTTGTCCTCCTATGTCCGCTTATGCACGTGATGTCCGCGCCGAGAGAAAAATAATTTGAAGAACAAAGCAAGGAGCATTAATATATTCAACATTGGCCTCTCTCTGTCTAAGCGGCCGATGTGATTCTGTGCTGTTGAAGAGAGAGAGAGAGAGAGAAGAGATGGACTGGTACTGGTGCTAAAGCATACTTCGTGGATTACGTGGAATTACAGCACTATAACATATATGGTTTTTTTATAGACAACTGGCCACATTATGATACTAAAAGTCTAAAACGCAACTGAGTTCAGCACCGGAGTAGTCCACGTATAAGCTGCCAAGTGGTGTTCCTGAGGGAATAATGTGACAGAACAAAAAAACAACAGTATAGCAGAGATAAATAATGTCGTAAACATCACTTCTCCAGATTGGTACTCTGCACCAAATTTCAGGCCTTTAGGTTCCTGGGGAATTGTCCAAAGTGAGAGCCTAGTGTATAGCGGAGTTTTTAAAAT
Unaligned ( gi|8 ): GATGCAAGCATGACTGAGGTCTGACAAAGGGACAATGATACGTATGATAATGAGAAATGTCATGCGTAGCAACCGATACTGGTATAAAACCTCGGGCGATTTGTAAATTTGTTTAGTGAGCTTGCCTCGCGAAGAAGTGCACCAAATGCGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTTATGCACGGCATGGCCCTGAGAAGAAAAAAATTAAGAACAAAGCAGGACATATTAATATACAATGTGCCTCTGCCATCAGCCCATGTGCAGTGATGAGAGAGAGAGAGGACCTTAGCTGCTGGGCTAAGCATACTTCGTACGTGAAAAGACTATTAAATTGTATGGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTATAGCAGATTGTGAAATCGGTAAACTGTACCAGCGCCAAAATATCAGCTGAGTGCTTTACGATCCTCCTGAGGACAATTGGCCAACATGGAAGGCCACCTCAAAACAACCATTAGAGCAAATGGGCCTCAAGAATATGCAATTAGTTTTTATATATATTAAATATATATATATTTATATATATTTTTTTTGATATAGTTTAATATATAGGG
Unaligned ( gi|10 ): GCAATCGCAGAAATATGTCTATCTAGTGACCGAGGTCTACAAAGTGCACAATGATAACGTAAACCTATAAATGAGAAATGTATGCATAAGCAACCCGGATACTGTATAAAACTTCGGGCATGAAATGTGTTTTATGACTGCCTCGCCGAAGAAGAAATGCACAACAAAGCACCCCCCCCCCTTATGCACGCTATGCCCCGAGAAAAAAATTGAAACAAATATCGAGTGTCAGTGATAGTGAAGTTAACAATGTGCCTCTGCAAATCACCCATTTGCATGTGTGAAGAGAAGAGAGAAGATAGACCTTAACTTTGCTAAAGCATACTTAACGTTGTTGAAAAAGACTAAAATTATATGAAACTGCGTTTACAAACATTCACCATACTGATGTTCAGCCGAGTATCAGTAACTGGCCAATTTCCTGAGAATAATGTACAAAAAAACAGTATAGTCGATTTGAAATTAACCACTGAACACGTCTCCAGACTGTTACCTGCCATAATATCAGGGACTGGCCTTTAGGTTCCTGAGGAAATTGGCCAATGGAAGGCACTCAAGCAAAAAATTAGATGTAATATGGGTTTTTAAAATATATTATATAGTTTGATCTATTTTTTTTATATATATATATATATATATA
Unaligned ( gi|18 ): TATAAATGAGAAATGTATGCATAGCAACCCAATATTGGTATGAAACTCGGGGCGACTATAAATTTGTTTAGTGAGCTTGCCTCGCGAAAGAAAGTGCACCAAATGCACACACACCCCTTATGCACAGCATGGCCCCGAGAAGAAAAAATTGAGAACAAAGGCAGGGACATATAAATATACAATGTGCCTCTGCCATCAGCCCATGTGCATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGACTTACTGGTGGCTAAAGCATACTTCGTACATGGAAAAAGACTATAAATTGTATGGTTTAAGAAACTGCGTTATACAATACGGTTCACCATACTGA
Unaligned ( gi|19 ): GTGAGCATGATCCGAGGGTGCGGTCTTGACAAAGTGCACACATTGATGACCGATATGACCTATAAATGAGAAATGTACTATAGTACTGCTTTAGTCACCCCGATACTTCGCGTATGATACAATCGGGGGTCGATTGTTAATCTTGATTTAGTTGAGCTTTGCCTCGCTAAGCATAATCCGTGACAAGACCCCCCCTTATGCCATCCGGCATGACCCCGAGATAAGAAAGCAAAGAAAAATATTTGCAGAACAAAGCAGACATATAAATATACCAATGTGCCTCTCTGCCATCAGCCATTGCTATGTGAAGAGAGATACGAGA
Unaligned ( gi|30 ): ACCCCCTCCCACTTATGTAGGGCATGGCCCGAGAAGTAAAAATCAAATGAGAACAAAGGCAGGAAATATAGATACACAATGTGCCCCTGCCATCATTGCCCATGTG
Unaligned ( gi|31 ): TGGAAACTGCGTTACACGTATCAGTTGTCCATACTGATGCTCTGTGCCAATTATCAGGAGCTGGCCTGTGTGGTTCCTGAGAAAAAATGTGACAGAAAT
Unaligned ( gi|33 ): TGCGATATCGGTACCCGGACAGCATCACCCAACTTTCCAGTTGAAAGTCGACTGTCGTTGCCTCTGAAAG
Unaligned ( gi|34 ): ACTTTGGCTAAATGCATACTTTCTTACGTGGACAAAAGTACTATTAAATTGTCATGGTTT
Alignments
lowQualScore : 111111111 1111111111 22 11 2222222222222222222222 333333 1 111 11 111 11 111 222222222222222 1111111111 222222222222 222222222222222 11 1 22222222222222 1111 11111 11 11 111111111111
lowQualScore : 999999999 7777777777 5 5 8 44 3 3 3 3 9 3 6 555 6 9 3 3 11 44 9 44 6 88 7777777777777777777777 1 3 3 6 0 444444 44 44 6 3 3 9 77 0 0 3 1 3 3 3 3 222 7 3 88 44 4 111 4 8888 44 4 1 8 8 4 55 222 666666666666666 7777777777 8 333333333333 4 4 888888888888888 3 4 55 7 1 3 6 3 3 00 55 3 7 3 2 3 4 66666666666666 4 4 2 0 2 33 5 2 66 7 66 5 5 8888 2 4 33 55 55 55 55555 2 33 33 33 11 66 4 2 1 2 66 33 66 0 2 4 22 2 4444 66 2 4 33 333 0 4 4 4 666666 0 111111111111 88 2 7777777 2 2 2 9 4
lowQualScore : ......... .......... . . . .. . . . . . . . ... . . . . .. .. . .. . .. ...................... . . . . . ...... .. .. . . . . .. . . . . . . . . ... . . .. .. . ... . .... .. . . . . . .. ... ............... .......... . ............ . . ............... . . .. . . . . . . .. .. . . . . . . .............. . . . . . .. . . .. . .. . . .... . . .. .. .. .. ..... . .. .. .. .. .. . . . . .. .. .. . . . .. . .... .. . . .. ... . . . . ...... . ............ .. . ....... . . . . .
lowQualScore : 888888888 9999999999 0 0 0 66 1 1 1 1 2 1 2 111 2 2 1 1 55 22 2 22 2 55 3333333333333333333333 0 1 1 2 8 111111 22 22 2 1 1 2 99 5 9 6 4 6 6 6 6 777 3 6 55 11 0 000 0 5555 55 0 4 0 0 0 55 222 111111111111111 2222222222 0 888888888888 0 0 222222222222222 6 3 00 3 9 3 7 3 3 00 00 6 3 6 5 2 0 99999999999999 0 0 7 8 4 77 0 5 99 5 99 0 0 1111 5 7 22 66 11 66 33333 4 22 22 22 22 55 7 4 8 2 11 11 11 8 2 4 88 2 7777 11 2 4 11 999 6 4 4 4 444444 5 444444444444 33 2 6666666 4 4 4 4 7
consensus : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
Reference ( family-1263 ) : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|11 : TTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-
gi|12 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagTTCGG--C---A--ATT------C-A-CTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATAT-G---G--CA--AT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC---ACT-GC--C-TTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-atctc
gi|13 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagGCTTCG---CC--A--ATTT-----C---CAT-TCGC-TGCT-GTT--GAC-A-AAA-CG-AATTCG--A-T-ACAGC--TCCT-GAATGGG-CG---GTCG-A--G-TCT--T-----------T--GG----------------------GGAG-T-TT-GCATT--ATGTG--CA--AT-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCGG-GATTCT-CTGTG-ATTC-GG-A-TGGGCTCC--TTCAGCA-CGA--TGTT-GAGGG----TCG---CC-CACCG-G-G-TC--GCCC--GTACACC--AA--------GCT---------G-GGC--A-C--TA-T-CACAT-CCGC-TATT-------CC-ACTGC-TTTGACCGTCTCGC-CTGTT--TTCTGAAGACGGGCCGA-C-ATCGCT-GATGAGAA--T--TGAT-GCA-TAA-TAA-GAGTG-TCACT--CA--------TC-AGAA-TGTTTA-AAGC-T--TT--------ATAA---AA--C-TGGGT-C---------AATGTAAGT--GAA-C--TGCGCAT--TAC-CCAAAAGTGGGATCAGCG-G-TGACTT--TA--G-CCGAGGCA--ATTT--GGCCACAAG-ACAGTT-ACATCGCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACCCAG---AATCGA-TGT-CAAT------T-A------------AAGG--GAT-TATT-------T-A-GATTATGGAAAT-TAAATA-ATCatctc
gi|14 : tgaaagttgactgtcattgcctcgtaagcttgtgcactcttaggcaaataGCTTCAG--CC--A--ATTT-----C-A-CTT-TCGT-TGCT-ATTTCGAC-A-AAA-CG-TATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGCC-G-TT-GCAAA--A---G--CA--AC-A-ACGGGTC-AT-GTGGCTGT--AGCGTCTAA-GCAT--TCCG-AA-CCT-C-GTG-G-TC-GA-G-TGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCCT-CCT-CGCCGTG-G-TC--GTCC-TCTAC-CG--AA--------GCT---------G-GGC--A-C-TTG-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-ATGTTAGGTCTAAAGGCTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----ACGAA-TG--TT--GA--GCCCGAGGGA--ATTT--GGCCACCAG-ACAGTTGACAT-CCCG-ATAC--C--T--CACAA-AC-T--T-TTAACCAGCTAG--A-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAGT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATCctca
gi|15 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--AC-T--GG----------------------AGCC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCA-CG---TGTT-GAG---------------------G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--GT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATC
gi|16 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--CC-T--GG----------------------AGCC-G-CT-GCAAA--AA--G--CA--AC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCG-CG---TGTT-GAG---------------------G-G-TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CCTC-CA--CCC---A---A--GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--AT--GA--GCCCAAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|17 : GCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GACAA-AAA-TG-AATTCGCTG-T-ACAGC--CGCT-GA-T-GG-GTTAGGTCGAA--GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-GTTT-GCAAA--ATGCG--CA--ACTT-GCGGATC-AA-GTGGCCGctca
gi|20 : ccacaatggaaggcactacaagcaaaattagatgcaatatgggtttttaaaaatacagagatatatagttcatctatttttttttttttaaattatagttctgaatatataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagttgaaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaataGCT-ATTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GATCT--C-CCGGT--CC-T--GG----------------------GGGC-G-TT-GCAAA--AAC-G--CA--AC-G-GCAGGT--AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCA-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GT
gi|21 : aaagaaacgtaccaaaattgaacaggtgcgatatcggtccccggacagcatcacccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-GTT--GAG-A-AAG-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAG-TCG-A--G-TCT--T-CTG-T--CT-T--GG----------------------GGGC-G-TT-GCAAATGC---G--CA--AC-G--CGGGTCCAA-GTG-CT-T--AGCGTCAAA-GCAT-GTTCGGAA-CCT-C-GTG-T-TC-GA-G-GCGGCTCTTGTTCAGCA-CG---TGTTTGAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CA--AA--------GCT---------G-GGC--A-C-TTA-T-CACAT-TCGC-TATTCGC-------ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGA
gi|22 : TGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGA--GCA-TAATAAA--GCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TAAAGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCTG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------CAA------------AAGG--GAT-T
gi|23 : TTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-GATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--TCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCAAGGCA--ATTT--GGCCACAAG-ACAGTTGACGT-GCCG-ATAT--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-AT
gi|24 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tct
gi|25 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tcctc
gi|26 : TG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCGT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-AC-GTTG-CA--GCCG-ATAT--CTTT--CAC-A-CC-T--TGTTAACC----AG--G-A-ATTA--GG---T-CGGAG-TATATCGA-TGT-CACT------TAA------------AAGG--GAT-TATT-------T-AGGA-TATGGAAAT-TAAATA-ATCtcctc
gi|27 : ttA-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCctcat
gi|28 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCcta
gi|29 : AGGAAGT-GGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--TC--GA--GCCCGAGGTA--ATTC--GGCCACCAG-ATAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-TG-C-CCAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAA-----------------------------------T-------T-A-GA-TATGGAAAT-TAAATA-ATCcta
gi|3 : GCTTCGG--CC--A--CTTT-----C-AACTTGTCGCATGCT-GTT--GAC-A-AAA-CGTAATTCGCTG-TCACCGCTAACCT-GA-TGGGCGGTAGGTCG-A--GGTCTGTTGTTGGTTCCC-T--GG----------------------GGGGAG-TT-GCATA--T---GTGCA--AT-G-GCGG--T-AA-GTGGCTGTCGGGCGTCAAAAGCATTGTCAG-GA-TCT-C-GTG-T-TC-GA-GGTGGGCTC--GTCCAGCAACG---TGTT-GAGG-----TCGT-CCTACACTG-G-G-TCTCGCCCGTGTAC-CA--AAAGCCCCCCGCCCTGGGGAGGG-GGCCAA-C-TTA-TACACATTCCG--TATTCT----ACTCAATGC-TTG-ACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-CAATCGCTGGATGAGAA--T--TGCTAGCA-TAA-ATAAAGCTG-TCACTC-CA--GACCGTTCAAGAATTGTTTATAAGCATGGGTG-GCAA--GTAAT-GAA--C-TGCGC-CTT-------AAAGGAAGT--GAATTAATGCGCATAAGCGACAGAG--TGG-----ACAAA-TG--TT--TGCCGCCAGAGGC---ATTT--GGCC-CAAG-ACAGTTGACAT-G-CG-ATAC--C--T--CACGATAC-TG-T-TTAACC----AG--G-A-ATTA--AGGTATACGCAG-TAAATCGA-TGT-CAAT------TAA------------AGGG--AATATATT-------TGA-GA-TATGGAAAT-TAAATA-ATCctc
gi|32 : ttatatcataatttaaatacatgttgttgtgtaacatacaagaggtacaacacatgataaatgaaattatgagaatattaccgcgttttaaaaggaaagaagacgtacaaaatttgaacaggtgcgatattggtcccctgacagcagtcaccgcagctttccagtttcgaaagtctgactgtcatgcctcgaaagcttgtgcacacttagcagaaaaaaataCA-ATAC--C--T--CACAA-AT-TG-C-CTAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGGAAT-TAAATA-ATCctcat
gi|35 : C-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-C-ATCGCT-GATGAGctc
gi|36 : GG-CGA-C-ATTGCT-GATGAGGA--T--TGAT-GCA-TAA-AA
gi|4 : TTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GGTCT--T-CTGGT--CC-T--GG----------------------GACC-G-CT-GCAAA--A---G--CA--AC-G-GCGGGTC-AC-TTTGCTGT--AGCGTCTAA-GAAT-TTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCGT-CCT-CGCCGTG-G-TC--GTCC-TCTCC-CC--AA--------GCT---------G-GGG--A-C-CTA-A-CACA-----------------GTT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTAAAAGCTGG-TGG-C-ATTGCT-GGTGAGGA--T--TGAT-GCA-TAA-AAACGGCT-------------G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGT-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-TCGAA--TCG-----ACGAA-AG--TT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GA--------AT-TAGATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|6 : tgcccatcatggaagtgactcaagcaaatcaaattagatgctatatgggttttaattaatatagtcttttattatatttatataatagtttaattataattaagtatagtttacatcaccaagagtacaaacacttgaaaaatggagattagttgtgtataaagcaaagagaaacgttaccaaaattgtgacaaggtacgaatactcagtcccggacgcatcaccccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacaGCTTCGG--CCTAG--ATTTTCCGAC-A-CTT-TCGC-TGCT-GTT-CGAC-AGAAA-CG-GAATCG-TGGTGACGAC--GCC--GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CT-T--GGGGCGAGGTCGTGCTGGTCTTTGGGGC-G-TTGGCACA--AT--G--CGTCACGG-GCGGGTC-AATGTGGCTGT--Actcat
gi|9 : acttagctggtgctttaaagcatacttcgtacgtggaaaagaactataaattgtatggattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaacgagtatagcagaggtaatgaaagggtgaccgatgaggacgtctccaggactgggtacttcttgcggccaaatatcaggagctggccttaggttcctgaggatttggcaaaatggaaggcaaactcagcaagaaattaaatgatgctgatatgggtttttaaaatataaaattgagttgtatattattttgttatagtagtttaattatagtagggtaacatacccaaaaggtttactgaacaacttgagtaaagaatttgaaatgtgtgtatggaagaaggaaagaaacgtaccagaagattgaaacaggtcgatatcgatggccatgaacaagcatcacccagtttccccagttgaaagtactgtcgttgcctcggaagctcgtgcactcttagGCTTTGGGCCC--AGAATTT-----CCA-CTT-TCGC-TGCT-GTT--GAC-A-AAAATG-AATTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCG-AA-GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-G-TTTGCAAA--ATGCG--CA--AC-TTGCGGATC-AA-GTGGCCGTT-AGCGTCAAA-GCCT-GTCGG-AA-CCTTC-GTA-G-TC-GACGTCGAG-TCT----CAGCA-CGCCATGTT-GACGGCGGCTCGTTCCT-CGCCG-G-GATC--GCCC-TTTAC-CCCCAA--------GCT---------G-GGC--AAC-TTA-T-CA-AT-CCGCCTATT-TCGGTAC--ACCGCGTTGGACCGTCT--C-CT---AGGT-TGAAGACTTG-CGA-C-ATTGCT-GATGAGGA--TATTGAT-GCA-TAA-AAA-AACTGGTCACT--CACAG-----TC-AGCA-GATTTA-A-GCCT--GTG-GC-A--GTAAAAGAA--C-GGCGA-CAT----AATAAAGGAAGT-AGAATT--TGTGCATT-GGG-CCGAAA-TGG-----ACGAAATG--TT--G---GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCGTATAC--C--T--CACAA-AC-T--T-TTAATC----AG--GAA-ATTATGAG---TACGCAG-TAAATCGA-TGT-CAATAAAAAATAAAAAAAAAAAAATAAGGT-AAT-TATTTTAGATAT-A-GA-TATGGAAAT-TAAATA-ATCt
blockSeqs : GCCCAGA TTCCGACA G A A TC A G A T C G C TAA A G C A AA GT A TC G TG GGCGAGGTCGTGCTGGTCTTTG G A T G ATGT TG TC T T C C CG A T G G T T T TA C C GT TT A CCA T CGGC TT A A T A A TC GTG CAAAAGCCCCCC CCTGGGGAGG T CAACTTATA T C TTTCGGTACACC G C CG G G C A A G AT AT A A T A A G CTCCAGACCGT A T T A GG A A AT T AG G T TGAA T G AA AA AC AG GATCA A AC AA CC AG TC T C G T AG TT AT T T TG G AGCT AG A T TG GTA A G C AAAAAA AAAAAAAAAAAT GA A TTAGATA G G T A C
blockSeqs : GCCCAGA TCCA . . . TC . . . . C . G T . A . . A . G . . TG . A . . T ATGC . . G . . T T A . G . . . . AT . . TC C . A . . T . A T . . . TG CCCCAA T T CCGTTAAT . . TTCTCACTACT . A . . G . . . . . . . . . C G . CTGGCAG . . . A . A . . A AG G T TGAA . G . T C A A . . . . AG . T . C . . . AT . . TG . . AG . T . . A G C . . GA . . . . . G C
blockSeqs : CCTAG TCAA . . . TC . . . . C . . T . . . . . . . . . . . C . . . ATGC . . . . . . . . . C . . . . G . . G T . . . . T . G . . . . TC ACCAA T . AACTTAT . . TTCTACTCAAT . A . . T . . . . . . . . . C G . CTCACAG . . . A . . . . . . . . T . . . . C . A . . . . T . . . C . . . . . . G . . . . . . . . . . . . T . . . . . G .
blockSeqs : CCA TCCA . . . TC . . . . . . . G . . . . . . . . . . . C . . . AAC . . . . . . . . . C . . . . A . . T A . . . . T . G . . . . TG ACCAA T . ACTTGT . . TTCTCACTGC . A . . T . . . . . . . . . C G . CTCAG . . . A . . . . . . . . T . . . . C . G . . . . T . . . C . . . . . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : CCA TCA . . . TC . . . . . . . G . . . . . . . . . . . C . . . TGC . . . . . . . . . C . . . . A . . T A . . . . T . A . . . . TC CGAA C . ACTTAT . . TTCGCACT . A . . T . . . . . . . . . A G . CTCAG . . . A . . . . . . . . T . . . . C . G . . . . . . . . C . . . . . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : CCA CA . . . C . . . . . . . G . . . . . . . . . . . T . . . TG . . . . . . . . . C . . . . G . . C T . . . . . . G . . . . TT CAAA C . ACCTAA . . TTCCACT . A . . T . . . . . . . . . C G . CTCA . . . A . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : CA TC . . . . . . . . . . . C . . . . . . . . . . . G . . . AA . . . . . . . . . C . . . . T . . C T . . . . . . G . . . . G CCAA T . ACTAT . . GTTACT . A . . G . . . . . . . . . . G . G . . . A . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . G . . . AT . . . . . . . . . A . . . . T . . C T . . . . . . . . . . . . . T . . . . CCCAA . A . . G . . . . . . . . . . A . . . . . A . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . G . . . A . . . . . . . . . C . . . . G . . G . . . . . . . . . . . . . . T . . . . CCCAA . . . . T . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . C . . . A . . . . . . . . . G . . . . G . . C . . . . . T . . . . . . . . . . A . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . G . . . T . . . . . . . . . . . . C . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . . . . . . . . T . . . A . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : CCGA***** TCCA****** ** ATG*** G** T* T* CNAA*********** ACTTAT****** TTCCACT******** ** CTCAG********* ** C* ** **
originalCons : GCTTCGG--CC--A--ATTT-----C-A-CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAA--A---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTCTC---ACT-ACTGC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
finalCons : GCTTCGGCCGA-----ATTTCCA------CTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAAATG---G--CA--AC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTGG--TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTACCNAA-----------GCC---------G-GGCACTTAT------CACAT-CCGC-TATTCCACT--------GC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACTCAG---------TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCGC-CGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|2 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|5 ): CACAACACCCCCACCCCATCACTCTGGTTGCGGGGGGTTATAAGATGCAATCGCAGAATATGATGTGCTAGCATGAACCGAGGGTCCTGACAAAGTGCAAATGATACGTATGACCTATAAATGAGACGAAATGTATAGCGATAGCACCCGTTATAATTACTGGTATAAGAAACTCGGGCGTATGTAAATTTGTTGAGTGAGCTTGCCCGGTAAGAAAAGTGCACCAAATTGCACCCCCCTTATGCAGGACAGGGGCCAGAACCCGTGACTCGAAGAATAATATTGGAGACACAGAAGGGCAAGGACATATATTATAAAGGGACAATATGCTCTGCCATCAGGCCAATGTGACATTCAGTGAAGAGGAGAGAGAGGAGGAGATAGGAGAGAGGACTTATCTGGTATTGGCCTTAAAGCATCCTGTATCGCGTACGTGGAAAAAGGACTATAAATGATAGGTTTAAGAAGAACTGCATTAGATATCAATTATGTAGAAACATAACACTGATGTTCAAGTTTACTGGAATTAAAGGGCACGAGTAAATCAGATAGAGACTAAGCCAAATGTTGTTTCCGTGAGAGGAAAAATGTACATAAAAAGGGAACAACAGTAAGCAGATTCGGAAAATGGTACAACAAACAGATTCTCAGATGGTACTATACTGCACACCAAATATCAGGCCTTTAGGTTCCTGGGGAAATTGGCAAATGGCAGGCACTCAAGCAATACAAGATAATTATATCAATAATTTGAGGTTTTTAAAATATAATATAGTT
Unaligned ( gi|7 ): GCAATCGACAGAATGACTGTGCTGTACGTTCATGACTCCGAGGTGCCTGACAATATGCACCTCAATATGATACTGTATTGAACTAGTAATAATGAGAAATTGTATTAGACATTACGCAACCCGAAACTTGGTATAATATGAGGTTGGGGCGATTGTTTTGTTGAGTTGATAGCTTGCCTCGCCGAAGAAAAGGCACATACCAAGTGCTACTTTTGTCCTCCTATGTCCGCTTATGCACGTGATGTCCGCGCCGAGAGAAAAATAATTTGAAGAACAAAGCAAGGAGCATTAATATATTCAACATTGGCCTCTCTCTGTCTAAGCGGCCGATGTGATTCTGTGCTGTTGAAGAGAGAGAGAGAGAGAGAAGAGATGGACTGGTACTGGTGCTAAAGCATACTTCGTGGATTACGTGGAATTACAGCACTATAACATATATGGTTTTTTTATAGACAACTGGCCACATTATGATACTAAAAGTCTAAAACGCAACTGAGTTCAGCACCGGAGTAGTCCACGTATAAGCTGCCAAGTGGTGTTCCTGAGGGAATAATGTGACAGAACAAAAAAACAACAGTATAGCAGAGATAAATAATGTCGTAAACATCACTTCTCCAGATTGGTACTCTGCACCAAATTTCAGGCCTTTAGGTTCCTGGGGAATTGTCCAAAGTGAGAGCCTAGTGTATAGCGGAGTTTTTAAAAT
Unaligned ( gi|8 ): GATGCAAGCATGACTGAGGTCTGACAAAGGGACAATGATACGTATGATAATGAGAAATGTCATGCGTAGCAACCGATACTGGTATAAAACCTCGGGCGATTTGTAAATTTGTTTAGTGAGCTTGCCTCGCGAAGAAGTGCACCAAATGCGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTTATGCACGGCATGGCCCTGAGAAGAAAAAAATTAAGAACAAAGCAGGACATATTAATATACAATGTGCCTCTGCCATCAGCCCATGTGCAGTGATGAGAGAGAGAGAGGACCTTAGCTGCTGGGCTAAGCATACTTCGTACGTGAAAAGACTATTAAATTGTATGGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTATAGCAGATTGTGAAATCGGTAAACTGTACCAGCGCCAAAATATCAGCTGAGTGCTTTACGATCCTCCTGAGGACAATTGGCCAACATGGAAGGCCACCTCAAAACAACCATTAGAGCAAATGGGCCTCAAGAATATGCAATTAGTTTTTATATATATTAAATATATATATATTTATATATATTTTTTTTGATATAGTTTAATATATAGGG
Unaligned ( gi|10 ): GCAATCGCAGAAATATGTCTATCTAGTGACCGAGGTCTACAAAGTGCACAATGATAACGTAAACCTATAAATGAGAAATGTATGCATAAGCAACCCGGATACTGTATAAAACTTCGGGCATGAAATGTGTTTTATGACTGCCTCGCCGAAGAAGAAATGCACAACAAAGCACCCCCCCCCCTTATGCACGCTATGCCCCGAGAAAAAAATTGAAACAAATATCGAGTGTCAGTGATAGTGAAGTTAACAATGTGCCTCTGCAAATCACCCATTTGCATGTGTGAAGAGAAGAGAGAAGATAGACCTTAACTTTGCTAAAGCATACTTAACGTTGTTGAAAAAGACTAAAATTATATGAAACTGCGTTTACAAACATTCACCATACTGATGTTCAGCCGAGTATCAGTAACTGGCCAATTTCCTGAGAATAATGTACAAAAAAACAGTATAGTCGATTTGAAATTAACCACTGAACACGTCTCCAGACTGTTACCTGCCATAATATCAGGGACTGGCCTTTAGGTTCCTGAGGAAATTGGCCAATGGAAGGCACTCAAGCAAAAAATTAGATGTAATATGGGTTTTTAAAATATATTATATAGTTTGATCTATTTTTTTTATATATATATATATATATATA
Unaligned ( gi|18 ): TATAAATGAGAAATGTATGCATAGCAACCCAATATTGGTATGAAACTCGGGGCGACTATAAATTTGTTTAGTGAGCTTGCCTCGCGAAAGAAAGTGCACCAAATGCACACACACCCCTTATGCACAGCATGGCCCCGAGAAGAAAAAATTGAGAACAAAGGCAGGGACATATAAATATACAATGTGCCTCTGCCATCAGCCCATGTGCATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGACTTACTGGTGGCTAAAGCATACTTCGTACATGGAAAAAGACTATAAATTGTATGGTTTAAGAAACTGCGTTATACAATACGGTTCACCATACTGA
Unaligned ( gi|19 ): GTGAGCATGATCCGAGGGTGCGGTCTTGACAAAGTGCACACATTGATGACCGATATGACCTATAAATGAGAAATGTACTATAGTACTGCTTTAGTCACCCCGATACTTCGCGTATGATACAATCGGGGGTCGATTGTTAATCTTGATTTAGTTGAGCTTTGCCTCGCTAAGCATAATCCGTGACAAGACCCCCCCTTATGCCATCCGGCATGACCCCGAGATAAGAAAGCAAAGAAAAATATTTGCAGAACAAAGCAGACATATAAATATACCAATGTGCCTCTCTGCCATCAGCCATTGCTATGTGAAGAGAGATACGAGA
Unaligned ( gi|30 ): ACCCCCTCCCACTTATGTAGGGCATGGCCCGAGAAGTAAAAATCAAATGAGAACAAAGGCAGGAAATATAGATACACAATGTGCCCCTGCCATCATTGCCCATGTG
Unaligned ( gi|31 ): TGGAAACTGCGTTACACGTATCAGTTGTCCATACTGATGCTCTGTGCCAATTATCAGGAGCTGGCCTGTGTGGTTCCTGAGAAAAAATGTGACAGAAAT
Unaligned ( gi|33 ): TGCGATATCGGTACCCGGACAGCATCACCCAACTTTCCAGTTGAAAGTCGACTGTCGTTGCCTCTGAAAG
Unaligned ( gi|34 ): ACTTTGGCTAAATGCATACTTTCTTACGTGGACAAAAGTACTATTAAATTGTCATGGTTT
Alignments
lowQualScore : 3333333 22 11 2222222222222222222222 3333 1 111 11 111 111111111 111 111 222222222222222 1111111111 222222222222 22222222222222 1 11 1 33333333333333 1111 11111 11 11 111111111111
lowQualScore : 8888888 3 888 5 5 8 44 3 3 3 3 9 3 6 555 6 9 3 3 11 44 9 44 6 88 7777777777777777777777 1 3 3 6 0 1111 6 3 3 9 77 0 0 3 1 3 3 3 3 222 7 3 88 44 4 111 4 666666666 4 1 111 4 55 222 777777777777777 7777777777 8 333333333333 4 55 0 77777777777777 0 4 55 7 1 3 6 3 3 00 55 3 7 3 2 3 4 11111111111111 4 4 2 0 2 33 5 2 66 7 66 5 5 8888 2 4 33 55 55 55 55555 2 33 33 33 11 66 4 2 1 2 66 33 66 0 2 4 22 2 4444 66 2 4 33 333 0 4 4 4 666666 0 111111111111 88 2 7777777 2 2 2 9 4
lowQualScore : ....... . ... . . . .. . . . . . . . ... . . . . .. .. . .. . .. ...................... . . . . . .... . . . . .. . . . . . . . . ... . . .. .. . ... . ......... . . ... . .. ... ............... .......... . ............ . .. . .............. . . .. . . . . . . .. .. . . . . . . .............. . . . . . .. . . .. . .. . . .... . . .. .. .. .. ..... . .. .. .. .. .. . . . . .. .. .. . . . .. . .... .. . . .. ... . . . . ...... . ............ .. . ....... . . . . .
lowQualScore : 1111111 2 888 0 0 0 66 1 1 1 1 2 1 2 111 2 2 1 1 55 22 2 22 2 55 3333333333333333333333 0 1 1 2 8 5555 2 1 1 2 99 5 9 6 4 6 6 6 6 777 3 6 55 11 0 000 0 333333333 0 4 000 0 55 222 444444444444444 2222222222 0 888888888888 0 66 7 66666666666666 9 3 00 3 9 3 7 3 3 00 00 6 3 6 5 2 0 99999999999999 0 0 7 8 4 77 0 5 99 5 99 0 0 1111 5 7 22 66 11 66 33333 4 22 22 22 22 55 7 4 8 2 11 11 11 8 2 4 88 2 7777 11 2 4 11 999 6 4 4 4 444444 5 444444444444 33 2 6666666 4 4 4 4 7
consensus : GCTTCGG--CC--GAATTTCC---ACTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAAATGCGCAAC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CC--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTC-C-----ACC----GC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
Reference ( family-1263 ) : GCTTCGG--CC--GAATTTCC---ACTT-TCGC-TGCT-GTTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGNC-G-TT-GCAAAATG-GCAAC-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CG---TGTT-GAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CN--AA--------GCC---------G-GGC--A-C-TTA-T-CACAT-CCGC-TATTC-C-----ACT----GC-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|11 : TTCGG--C----AATT--C---ACTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATA-TG-GCAAT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC-----ACT----GCCTTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-
gi|12 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagTTCGG--C----AATT--C---ACTT-TCGC-TGCTAGTT--GAC-A-A---CG-AATTCG-TG-T-ACAGC--TCCTAGAGTCGG-GGTAGGTCG-AAAGGTCG--TACTGGT--CTGT--GG----------------------GGGA-G-TT-TCATA-TG-GCAAT-G-GCGGGTC-AACGTGGCTGT--AGC-TCAAAAGCAT-GTCGA-GA-TCC-T-GTGTA-TCCGA-G-GGGACTC--GATCAGCC-AG---TGTT-GAGGG----TCG--CCT-CACCG-GAG-TC--GCCC-TGTACACC--AA--------GCT---------G-GGC--C-CGTTAAT-CACAT-CCGC-TATTCTC-----ACT----GCCTTGGCCCGTCT--CGCTGTTAGGTCTGAAGACGGC-CGAAC-ATCGCT-GATGGAGAATT--TGAT-GCAATAA-TAAAG--TG-TCACTGGCA--G-----TC-AGAA-TGTTTA-A-GCAT--GTG-GC-AATGTAATTGAA--C-TGCGC-ATT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG---GAA--TGG-----ACAAA-TG--TT---A--GCCCGA-GCA--ATTTTCGGCCACAAG-ACATATGACAT-CGCG-ATACAGA--T--CACGA-ACTT--T-TTAACC----AA--G-A-ATTA---G---TACGCAG-TAAATCGA-TGT-CAAT------T--------------AAGG--GA--TATT-------T-A-GA-TATGGAAATATAAATA-atctc
gi|13 : aaagttgactgtcattgcctcgtagcttgcactcttaggcaaaatagGCTTCG---CC---AATTTCC---A--T-TCGC-TGCT-GTT--GAC-A-AAA-CG-AATTCG--A-T-ACAGC--TCCT-GAATGGG-CG---GTCG-A--G-TCT--T-----------T--GG----------------------GGAG-T-TT-GCATTATGTGCAAT-G-GCGGGTC-AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCGG-GATTCT-CTGTG-ATTC-GG-A-TGGGCTCC--TTCAGCA-CGA--TGTT-GAGGG----TCG---CC-CACCG-G-G-TC--GCCC--GTACACC--AA--------GCT---------G-GGC--A-C--TA-T-CACAT-CCGC-TATTC-C-----ACT----GC-TTTGACCGTCTCGC-CTGTT--TTCTGAAGACGGGCCGA-C-ATCGCT-GATGAGAA--T--TGAT-GCA-TAA-TAA-GAGTG-TCACT--CA--------TC-AGAA-TGTTTA-AAGC-T--TT--------ATAA---AA--C-TGGGT-C---------AATGTAAGT--GAA-C--TGCGCAT--TAC-CCAAAAGTGGGATCAGCG-G-TGACTT--TA--G-CCGAGGCA--ATTT--GGCCACAAG-ACAGTT-ACATCGCCG-ATAC--C--T--CACGA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACCCAG---AATCGA-TGT-CAAT------T-A------------AAGG--GAT-TATT-------T-A-GATTATGGAAAT-TAAATA-ATCatctc
gi|14 : tgaaagttgactgtcattgcctcgtaagcttgtgcactcttaggcaaataGCTTCAG--CC---AATTTC----ACTT-TCGT-TGCT-ATTTCGAC-A-AAA-CG-TATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CC-T--GG----------------------GGCC-G-TT-GCAAAA---GCAAC-A-ACGGGTC-AT-GTGGCTGT--AGCGTCTAA-GCAT--TCCG-AA-CCT-C-GTG-G-TC-GA-G-TGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCCT-CCT-CGCCGTG-G-TC--GTCC-TCTAC-CG--AA--------GCT---------G-GGC--A-C-TTG-T-CACAT-CCGC-TATTC-TCACT-ACT----GC-TTGGACCGTCT--C-ATGTTAGGTCTAAAGGCTGG-CGA-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----ACGAA-TG--TT--GA--GCCCGAGGGA--ATTT--GGCCACCAG-ACAGTTGACAT-CCCG-ATAC--C--T--CACAA-AC-T--T-TTAACCAGCTAG--A-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAGT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATCctca
gi|15 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--AC-T--GG----------------------AGCC-G-CT-GCAAAA---GCAAC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCA-CG---TGTT-GAGGG-----------------------TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CC------TC-C-----ACCCAA-GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--GT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATC
gi|16 : TCGAC-A-AAA-CG-AATTCG-TT-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCG-A--AGTCT--T-CTGGT--CC-T--GG----------------------AGCC-G-CT-GCAAAA-A-GCAAC-G-GCGGGTC-AC-GTTGCTGT--AGCGTCTAA-GTAT-GTCCG-AA-CCT-C-GTG-A-TC-GA-G-CGGGCTCA-GTTCAGCG-CG---TGTT-GAGGG-----------------------TC--GTCC----AC---------------GCC---------GTGGT--------------CGT-CC------TC-C-----ACCCAA-GC-TGGG--CACCT--A-ATGTTAGGTCTAAAGGCTGG-CGG-C-ATCGCT-GATGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-GAGCAT--GTG-GC-A--GTAAT-GAT--C-TGTGC-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--AT--GA--GCCCAAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACT----GG--G-A-ATTA--GG---TACGCAA-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TGAATA-ATCctcat
gi|17 : GCTTTGGGCCCA-GAATTTCC---ACTT-TCGC-TGCT-GTT--GACAA-AAA-TG-AATTCGCTG-T-ACAGC--CGCT-GA-T-GG-GTTAGGTCGAA--GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-GTTT-GCAAAATGCGCAACTT-GCGGATC-AA-GTGGCCGctca
gi|20 : ccacaatggaaggcactacaagcaaaattagatgcaatatgggtttttaaaaatacagagatatatagttcatctatttttttttttttaaattatagttctgaatatataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagttgaaaagtttgactgtcgttgcctcggaaagctcgttagcacttcttagaagaataGCT-ATTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GATCT--C-CCGGT--CC-T--GG----------------------GGGC-G-TT-GCAAAAAC-GCAAC-G-GCAGGT--AA-GTGGCTGT--AGCGTCAAA-GCAT-GTCCA-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GT
gi|21 : aaagaaacgtaccaaaattgaacaggtgcgatatcggtccccggacagcatcacccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-GTT--GAG-A-AAG-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAG-TCG-A--G-TCT--T-CTG-T--CT-T--GG----------------------GGGC-G-TT-GCAAA-TGCGCAAC-G--CGGGTCCAA-GTG-CT-T--AGCGTCAAA-GCAT-GTTCGGAA-CCT-C-GTG-T-TC-GA-G-GCGGCTCTTGTTCAGCA-CG---TGTTTGAGGG----TCGT-CCT-CGCCG-G-G-TC--GCCC-TGTAC-CA--AA--------GCT---------G-GGC--A-C-TTA-T-CACAT-TCGC-TATTCGC-----ACT----GC-TTGGACCGTCT--C-CTGTTAGGTCTGA
gi|22 : TGAAGACTGG-CGA-C-ATCGCT-GATGAGGA--T--TGA--GCA-TAATAAA--GCTG-TCACT--CA--G-----TC-AGAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-CCGAA--TGG-----ACGAA-TG--TAAAGA--GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCTG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------CAA------------AAGG--GAT-T
gi|23 : TTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGCGC-GATT---AA-AAAGGAAGT-AGAATT--TGCGCAT--TCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCAAGGCA--ATTT--GGCCACAAG-ACAGTTGACGT-GCCG-ATAT--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GG---TACGCAG-TAAATCGA-TGT-CAAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-AT
gi|24 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tct
gi|25 : A-AAG-AT--GTGAGC-A--GGTAT-GGAAGCGTGCGC-CATTGAAAA-AAGGGAAGT-AGAAAT--TGCACAT--GCG---GAA--TGGA----ACGAG------T--GA--GACCG-GACAAGATTT--GG-GGCAAG-AGAGT--GCA--G-CG-ATA---C--T--CA-GA-AC-TTGT-TTAA-C----AG--G-CTGTTA--GG------ACAGATAAATCGAGTGTCCAAT------TAG------------AAGGGAGAT-TA-T-------T-A-TA-TATGGGAATGTAAATA-tcctc
gi|26 : TG-GC-A--GTAAT-GAA--C-TGCGC-CATT---AA-AAAGGAAGT-AGAATT--TGCGCGT--GCG-CCGAA--TGG-----ACGAA-TG--TT--GA--GCCCGAGGCA--ATTT--GGCCACAAG-AC-GTTG-CA--GCCG-ATAT--CTTT--CAC-A-CC-T--TGTTAACC----AG--G-A-ATTA--GG---T-CGGAG-TATATCGA-TGT-CACT------TAA------------AAGG--GAT-TATT-------T-AGGA-TATGGAAAT-TAAATA-ATCtcctc
gi|27 : ttA-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCctcat
gi|28 : A-AAGC-T--GTG-G--A--GTAAT-GAA--A-AGCGCTCAT----TA-A--GGAAGTGAGAAT----GCGTAT--GC--CCG----TGGG----ACGAA-TG--TT--GG----CCGGGTCAT-ATTT--GGC-ACAAGTACA-TTGACAT-GC-G-ATAC--T--TATCACGA-AC-T--T-TTAACC----AGAGG-A-ATTG--AG---TTCGCAG-TAAATCGA-TGT-CGAT------TAA------------AAGG--GAT-TATT-------T-A-GA-TATGG-AAT-TAAATACATCcta
gi|29 : AGGAAGT-GGAATT--TGCGCAT--GCG-CCGAA--TCG-----GCGAA-TG--TC--GA--GCCCGAGGTA--ATTC--GGCCACCAG-ATAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-TG-C-CCAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAA-----------------------------------T-------T-A-GA-TATGGAAAT-TAAATA-ATCcta
gi|3 : GCTTCGG--CC---ACTTTCA---ACTTGTCGCATGCT-GTT--GAC-A-AAA-CGTAATTCGCTG-TCACCGCTAACCT-GA-TGGGCGGTAGGTCG-A--GGTCTGTTGTTGGTTCCC-T--GG----------------------GGGGAG-TT-GCATA-TGTGCAAT-G-GCGG--T-AA-GTGGCTGTCGGGCGTCAAAAGCATTGTCAG-GA-TCT-C-GTG-T-TC-GA-GGTGGGCTC--GTCCAGCAACG---TGTT-GAGG-----TCGT-CCTACACTG-G-G-TCTCGCCCGTGTAC-CA--AAAGCCCCCCGCCCTGGGGAGGG-GGCCAA-C-TTA-TACACATTCCG--TATTC-T-----ACTCAATGC-TTG-ACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-CAATCGCTGGATGAGAA--T--TGCTAGCA-TAA-ATAAAGCTG-TCACTC-CA--GACCGTTCAAGAATTGTTTATAAGCATGGGTG-GCAA--GTAAT-GAA--C-TGCGC-CTT-------AAAGGAAGT--GAATTAATGCGCATAAGCGACAGAG--TGG-----ACAAA-TG--TT--TGCCGCCAGAGGC---ATTT--GGCC-CAAG-ACAGTTGACAT-G-CG-ATAC--C--T--CACGATAC-TG-T-TTAACC----AG--G-A-ATTA--AGGTATACGCAG-TAAATCGA-TGT-CAAT------TAA------------AGGG--AATATATT-------TGA-GA-TATGGAAAT-TAAATA-ATCctc
gi|32 : ttatatcataatttaaatacatgttgttgtgtaacatacaagaggtacaacacatgataaatgaaattatgagaatattaccgcgttttaaaaggaaagaagacgtacaaaatttgaacaggtgcgatattggtcccctgacagcagtcaccgcagctttccagtttcgaaagtctgactgtcatgcctcgaaagcttgtgcacacttagcagaaaaaaataCA-ATAC--C--T--CACAA-AT-TG-C-CTAACC----GT--G-A-ATTA--GG---TACACAG-TAAATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGGAAT-TAAATA-ATCctcat
gi|35 : C-TTGGACCGTCT--C-CTGTTAGGTCTGAAGACGGG-CGA-C-ATCGCT-GATGAGctc
gi|36 : GG-CGA-C-ATTGCT-GATGAGGA--T--TGAT-GCA-TAA-AA
gi|4 : TTTCGAC-A-AAA-CG-AATTCG-TG-T-ACAGC--GCCT-GA-TGGG-GGTAGGTCA-A--GGTCT--T-CTGGT--CC-T--GG----------------------GACC-G-CT-GCAAAA---GCAAC-G-GCGGGTC-AC-TTTGCTGT--AGCGTCTAA-GAAT-TTCCG-AA-CCT-C-GTG-G-TC-GA-G-CGGGCTCT-GTTCAGCA-CA---TGTT-GAGGG----TCGT-CCT-CGCCGTG-G-TC--GTCC-TCTCC-CC--AA--------GCT---------G-GGG--A-C-CTA-A-CACA----GT-TA-----------CT----GC-TTGGACCGTCT--C-CTGTTAGGTCTAAAAGCTGG-TGG-C-ATTGCT-GGTGAGGA--T--TGAT-GCA-TAA-AAACGGCTG-TCA------------------GAA-TGTTTA-AAGCAT--GTG-GC-A--GTAAT-GAA--C-TGTGT-CAT----AA-AAAGGAAGT-AGAATT--TGCGCAT--GCG-TCGAA--TCG-----ACGAA-AG--TT--GA--GCCCGAGGCA--ATTT--GGCCACCAG-ACAGTTGACAT-ACCG-ATAC--C--T--CACAA-AC-T--T-TTAACC----AG--G-A-ATTA--GA--------AT-TAGATCGA-TGT-CAAT------TAA------------ACGG--GAT-TATT-------T-A-GA-TATGGAAAT-TAAATA-ATC
gi|6 : tgcccatcatggaagtgactcaagcaaatcaaattagatgctatatgggttttaattaatatagtcttttattatatttatataatagtttaattataattaagtatagtttacatcaccaagagtacaaacacttgaaaaatggagattagttgtgtataaagcaaagagaaacgttaccaaaattgtgacaaggtacgaatactcagtcccggacgcatcaccccagctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacaGCTTCGG--CCTAGATTTTCCGACACTT-TCGC-TGCT-GTT-CGAC-AGAAA-CG-GAATCG-TGGTGACGAC--GCC--GA-TGGG-GGTAGGTCG-A--GGTCT--T-CTGGT--CT-T--GGGGCGAGGTCGTGCTGGTCTTTGGGGC-G-TTGGCACAATGCGTCACGG-GCGGGTC-AATGTGGCTGT--Actcat
gi|9 : acttagctggtgctttaaagcatacttcgtacgtggaaaagaactataaattgtatggattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaacgagtatagcagaggtaatgaaagggtgaccgatgaggacgtctccaggactgggtacttcttgcggccaaatatcaggagctggccttaggttcctgaggatttggcaaaatggaaggcaaactcagcaagaaattaaatgatgctgatatgggtttttaaaatataaaattgagttgtatattattttgttatagtagtttaattatagtagggtaacatacccaaaaggtttactgaacaacttgagtaaagaatttgaaatgtgtgtatggaagaaggaaagaaacgtaccagaagattgaaacaggtcgatatcgatggccatgaacaagcatcacccagtttccccagttgaaagtactgtcgttgcctcggaagctcgtgcactcttagGCTTTGGGCCCA-GAATTTCC---ACTT-TCGC-TGCT-GTT--GAC-A-AAAATG-AATTCGCTG-T-ACAGC--CGCT-GA-TGGG-T-TAGGTCG-AA-GGTCT--T-CTGGT--TC-TTGGA----------------------GGTC-G-TTTGCAAAATGCGCAAC-TTGCGGATC-AA-GTGGCCGTT-AGCGTCAAA-GCCT-GTCGG-AA-CCTTC-GTA-G-TC-GACGTCGAG-TCT----CAGCA-CGCCATGTT-GACGGCGGCTCGTTCCT-CGCCG-G-GATC--GCCC-TTTAC-CCCCAA--------GCT---------G-GGC--AAC-TTA-T-CA-AT-CCGCCTATTT-CGGTACACC----GCGTTGGACCGTCT--C-CT---AGGT-TGAAGACTTG-CGA-C-ATTGCT-GATGAGGA--TATTGAT-GCA-TAA-AAA-AACTGGTCACT--CACAG-----TC-AGCA-GATTTA-A-GCCT--GTG-GC-A--GTAAAAGAA--C-GGCGA-CAT----AATAAAGGAAGT-AGAATT--TGTGCATT-GGG-CCGAAA-TGG-----ACGAAATG--TT--G---GCCCGAGGCA--ATTT--GGCCACAAG-ACAGTTGACAT-GCCGTATAC--C--T--CACAA-AC-T--T-TTAATC----AG--GAA-ATTATGAG---TACGCAG-TAAATCGA-TGT-CAATAAAAAATAAAAAAAAAAAAATAAGGT-AAT-TATTTTAGATAT-A-GA-TATGGAAAT-TAAATA-ATCt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|2 ): ACGATTGTGAAAAAAAGCTAAGTCAGTAAGTACATATTTTGGAACCTATGATTCAGACAATGCCATTCCATGTCGATCTAAAATCACAAATTGAATGAAATCGCGAGTTGATTGGAGGAGTTAGACAACGTGCTACGGACAGACGATTGGCAGACTGGTGAAGACTATTAACACACATCAATCACATAACACAACTCACCCCCCCCCCACTTGGTTGGGGGTTATAAGATCGGCATCGCAGAAATGATGTGCAGCAGACGAGGGTGACAAAGTGCACAATGATACTATGACCTGATAAATGAGAAATGTATGCATGCAACCGATATCGGTATAAACTTCGGGCGCATTGTAATTGGTTGAGTGCCAGCATTTGCCATCGCGAACGAAATGAGTGCACAAAATGCACCCCTTATGCAGACATGGACCTGAGAAGAAAAATTAGAACAGAAAGGCAAGGAAATAATATGACAATAGCCCTGCCATCAGCCATGTCGCATCGTAGAGGAAGAGCGAGAGGCAGAGAGAGAGAGGATTCGGTGGCTAAAGATCACTTAGTGCAGTGGAAAAAGACTAGTGAATGATATGGTCTAGAAACTGCTTATACAGGACCAGTTCAACAATACCGATGTTTCGGCCCGAAGATCAGTAATTGGCTAAGTGGTTTTCTGAGGAAAATTGTGACAGAGACAAAAAACAAAGTATAGCAGGATTGGAAATCGGTAACATCAAACAGTTCCAGATTGGTATCTGACCAAATACTCAGGACCTTTAGTTCCTGGGGAGTTGGCCAAAATGAAGGCACTAAGCAAAAATTATATGCAATATTGGTTTTTAAAATATTATAT
Unaligned ( gi|5 ): CACAACACCCCCACCCCATCACTCTGGTTGCGGGGGGTTATAAGATGCAATCGCAGAATATGATGTGCTAGCATGAACCGAGGGTCCTGACAAAGTGCAAATGATACGTATGACCTATAAATGAGACGAAATGTATAGCGATAGCACCCGTTATAATTACTGGTATAAGAAACTCGGGCGTATGTAAATTTGTTGAGTGAGCTTGCCCGGTAAGAAAAGTGCACCAAATTGCACCCCCCTTATGCAGGACAGGGGCCAGAACCCGTGACTCGAAGAATAATATTGGAGACACAGAAGGGCAAGGACATATATTATAAAGGGACAATATGCTCTGCCATCAGGCCAATGTGACATTCAGTGAAGAGGAGAGAGAGGAGGAGATAGGAGAGAGGACTTATCTGGTATTGGCCTTAAAGCATCCTGTATCGCGTACGTGGAAAAAGGACTATAAATGATAGGTTTAAGAAGAACTGCATTAGATATCAATTATGTAGAAACATAACACTGATGTTCAAGTTTACTGGAATTAAAGGGCACGAGTAAATCAGATAGAGACTAAGCCAAATGTTGTTTCCGTGAGAGGAAAAATGTACATAAAAAGGGAACAACAGTAAGCAGATTCGGAAAATGGTACAACAAACAGATTCTCAGATGGTACTATACTGCACACCAAATATCAGGCCTTTAGGTTCCTGGGGAAATTGGCAAATGGCAGGCACTCAAGCAATACAAGATAATTATATCAATAATTTGAGGTTTTTAAAATATAATATAGTT
Unaligned ( gi|7 ): GCAATCGACAGAATGACTGTGCTGTACGTTCATGACTCCGAGGTGCCTGACAATATGCACCTCAATATGATACTGTATTGAACTAGTAATAATGAGAAATTGTATTAGACATTACGCAACCCGAAACTTGGTATAATATGAGGTTGGGGCGATTGTTTTGTTGAGTTGATAGCTTGCCTCGCCGAAGAAAAGGCACATACCAAGTGCTACTTTTGTCCTCCTATGTCCGCTTATGCACGTGATGTCCGCGCCGAGAGAAAAATAATTTGAAGAACAAAGCAAGGAGCATTAATATATTCAACATTGGCCTCTCTCTGTCTAAGCGGCCGATGTGATTCTGTGCTGTTGAAGAGAGAGAGAGAGAGAGAAGAGATGGACTGGTACTGGTGCTAAAGCATACTTCGTGGATTACGTGGAATTACAGCACTATAACATATATGGTTTTTTTATAGACAACTGGCCACATTATGATACTAAAAGTCTAAAACGCAACTGAGTTCAGCACCGGAGTAGTCCACGTATAAGCTGCCAAGTGGTGTTCCTGAGGGAATAATGTGACAGAACAAAAAAACAACAGTATAGCAGAGATAAATAATGTCGTAAACATCACTTCTCCAGATTGGTACTCTGCACCAAATTTCAGGCCTTTAGGTTCCTGGGGAATTGTCCAAAGTGAGAGCCTAGTGTATAGCGGAGTTTTTAAAAT
Unaligned ( gi|8 ): GATGCAAGCATGACTGAGGTCTGACAAAGGGACAATGATACGTATGATAATGAGAAATGTCATGCGTAGCAACCGATACTGGTATAAAACCTCGGGCGATTTGTAAATTTGTTTAGTGAGCTTGCCTCGCGAAGAAGTGCACCAAATGCGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTTATGCACGGCATGGCCCTGAGAAGAAAAAAATTAAGAACAAAGCAGGACATATTAATATACAATGTGCCTCTGCCATCAGCCCATGTGCAGTGATGAGAGAGAGAGAGGACCTTAGCTGCTGGGCTAAGCATACTTCGTACGTGAAAAGACTATTAAATTGTATGGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTATAGCAGATTGTGAAATCGGTAAACTGTACCAGCGCCAAAATATCAGCTGAGTGCTTTACGATCCTCCTGAGGACAATTGGCCAACATGGAAGGCCACCTCAAAACAACCATTAGAGCAAATGGGCCTCAAGAATATGCAATTAGTTTTTATATATATTAAATATATATATATTTATATATATTTTTTTTGATATAGTTTAATATATAGGG
Unaligned ( gi|10 ): GCAATCGCAGAAATATGTCTATCTAGTGACCGAGGTCTACAAAGTGCACAATGATAACGTAAACCTATAAATGAGAAATGTATGCATAAGCAACCCGGATACTGTATAAAACTTCGGGCATGAAATGTGTTTTATGACTGCCTCGCCGAAGAAGAAATGCACAACAAAGCACCCCCCCCCCTTATGCACGCTATGCCCCGAGAAAAAAATTGAAACAAATATCGAGTGTCAGTGATAGTGAAGTTAACAATGTGCCTCTGCAAATCACCCATTTGCATGTGTGAAGAGAAGAGAGAAGATAGACCTTAACTTTGCTAAAGCATACTTAACGTTGTTGAAAAAGACTAAAATTATATGAAACTGCGTTTACAAACATTCACCATACTGATGTTCAGCCGAGTATCAGTAACTGGCCAATTTCCTGAGAATAATGTACAAAAAAACAGTATAGTCGATTTGAAATTAACCACTGAACACGTCTCCAGACTGTTACCTGCCATAATATCAGGGACTGGCCTTTAGGTTCCTGAGGAAATTGGCCAATGGAAGGCACTCAAGCAAAAAATTAGATGTAATATGGGTTTTTAAAATATATTATATAGTTTGATCTATTTTTTTTATATATATATATATATATATA
Unaligned ( gi|18 ): TATAAATGAGAAATGTATGCATAGCAACCCAATATTGGTATGAAACTCGGGGCGACTATAAATTTGTTTAGTGAGCTTGCCTCGCGAAAGAAAGTGCACCAAATGCACACACACCCCTTATGCACAGCATGGCCCCGAGAAGAAAAAATTGAGAACAAAGGCAGGGACATATAAATATACAATGTGCCTCTGCCATCAGCCCATGTGCATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGACTTACTGGTGGCTAAAGCATACTTCGTACATGGAAAAAGACTATAAATTGTATGGTTTAAGAAACTGCGTTATACAATACGGTTCACCATACTGA
Unaligned ( gi|19 ): GTGAGCATGATCCGAGGGTGCGGTCTTGACAAAGTGCACACATTGATGACCGATATGACCTATAAATGAGAAATGTACTATAGTACTGCTTTAGTCACCCCGATACTTCGCGTATGATACAATCGGGGGTCGATTGTTAATCTTGATTTAGTTGAGCTTTGCCTCGCTAAGCATAATCCGTGACAAGACCCCCCCTTATGCCATCCGGCATGACCCCGAGATAAGAAAGCAAAGAAAAATATTTGCAGAACAAAGCAGACATATAAATATACCAATGTGCCTCTCTGCCATCAGCCATTGCTATGTGAAGAGAGATACGAGA
Unaligned ( gi|30 ): ACCCCCTCCCACTTATGTAGGGCATGGCCCGAGAAGTAAAAATCAAATGAGAACAAAGGCAGGAAATATAGATACACAATGTGCCCCTGCCATCATTGCCCATGTG
Unaligned ( gi|31 ): TGGAAACTGCGTTACACGTATCAGTTGTCCATACTGATGCTCTGTGCCAATTATCAGGAGCTGGCCTGTGTGGTTCCTGAGAAAAAATGTGACAGAAAT
Unaligned ( gi|33 ): TGCGATATCGGTACCCGGACAGCATCACCCAACTTTCCAGTTGAAAGTCGACTGTCGTTGCCTCTGAAAG
Unaligned ( gi|34 ): ACTTTGGCTAAATGCATACTTTCTTACGTGGACAAAAGTACTATTAAATTGTCATGGTTT