lowQualScore : 4 1 1 444444 4 444444 1 1 444444 8888 4 1 1 1 4444444 1 1 1 11111 11 2 44 111 333 11 111 1111 5555555555555555555555555555555555 666666666666666666666666666666666 5555555 11111 333333333 33
lowQualScore : 0 7 5 222222 0 333333 7 5 333333 6 6 5555 0 6 0 0 6 3 0 3 6666666 0 3 0 0 66666 3 11 4 0 0 22 777 111 8 3 11 8 000 6 5 5 2222 5 5 0 5 0 5 888 66 4 55 0 6666666666666666666666666666666666 4 4 888888888888888888888888888888888 1111111 0 11 6666 00000 666666666 2 0 55555 55555 2 2 00 4 6
lowQualScore : . . . ...... . ...... . . ...... . . .... . . . . . . . . ....... . . . . ..... . .. . . . .. ... ... . . .. . ... . . . .... . . . . . . ... .. . .. . .................................. . . ................................. ....... . .. .... ..... ......... . . ..... ..... . . .. . .
lowQualScore : 0 0 0 000000 0 000000 0 0 000000 0 0 0000 0 0 0 0 0 2 0 2 5555555 0 2 0 0 55555 5 00 0 8 8 00 555 222 0 2 00 0 000 0 6 0 1111 7 7 9 0 2 0 888 99 0 55 8 9999999999999999999999999999999999 4 4 999999999999999999999999999999999 0000000 7 88 5555 88888 666666666 7 1 66666 44444 2 2 00 7 0
consensus : AATATATCCTAGAAAAATTAGAA-TTGCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATANNNAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCGC--G--TGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCTAG-GTAA---ATAT--TA-AGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A--------------------------T---CTT-CACTT-TG----G--------------TT-A----------TGCACTCTCCATATAC-CTGTTCAATATTATTTT----GT-----ATGTTA--ATGT-ATGTA-AGTCCAATGAGCCGCATGG-----CT----CA-C-GGA-AA-TAAAGAAACTGAA
Reference ( gi|1 ) : AATAT-TCCTAGAAATATGAGAATTTGC-AAATATTG-TAATTT-AAAC-GATATCGAAGA-GAAT-TCCACTTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTATTATA-CAAAACCA---A--TGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAG-AACTAAGTAATCTAGTATAA---ATA---TA-AGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAACACAATTTAATGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A--------------------------T---CTT-CACTT-TG----G--------------TT-A----------TGCACTCTCCATATATCTTGTTCAATATTATTTT----GT-----ATGTTAC-ATGT-ATGTA-AGTCCAATGAGCCGCATGG-----CT----TA-C-GG--AA-TAAAGAAACTGGA
gi|13 : AATATATCCTAGAAAAATTAGAA-TTGCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATA
gi|4 : AAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCACATG--TGTTTATATAACTTGTAAA-TACTATTTGAGTGTCAATAATAGTTTAAAGAAACTAAGTAATCTAG-GTAA---ATATACTA-AGATATGCTACAAAAAACTACGTAATTGATACT---GTTACCAATTAGCACAATATACTG-TTT----TACAT-ACATGTATTTCCAATTCAAAGTATTGTCGTCTTAATA---CAGTG--TTATAATAT-AT--GAA-ATAga
gi|5 : AAAATATATCAA-AAAGTT-CTACT-TA-CAAAACCAT--G--TGTTTATA-AACTTGT-AAATACT-TTTGAGTGTCAATAATG--TTTAAGAAACTAAGTAATCTAG-GTAA---ATATC-TA-AGATATGCTA---AAAACTACGTAA-TGATA-T---GTTACCAATTAGCACAATATACTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TATT-ATA---CAGTG--TTATAATAT-AC--G
gi|18 : AAATATATCAA-AAAGTT-CTACTATA-C------------------ATA-AACTTGT-AA-TAC---------------AATG--TTAAAG-AACTAAGTAATCTAG
gi|2 : AATATATCAATAAAGTTTCTACTATAGCAAAACCG---AAGTGTTTATA-A-CTTGT-AA-TACT-TT-GAGTGTCATTAATG--TTAGAG-A--TAAGTTATAT----TAAGGTATA---TAGAAATATGCTAC--AAAATTACGGTA-TGATACT---GTTACCAATTAG-A-AATTTAATGTTTT----TACAT-AGATATTATTC--ATTC--AGTATTGTC-TGTT-AT----CAGTGATTTAT-ATAA-ATTGAAATATGTA--A--------------------------T---CTTACACTT-TG----GT-------------TT-A----------TGCA-TCTCCATATAT-------AA--------T----GT-----ATGTTAC--T----TGTA-AGT-CAATGAGTCGCATGG-----CT----GA-C-GG--AA-ATAAGAAAgt
gi|3 : gc--TTAAAATAACTAAGTAATCTAG-GTAA---ATA---TC-A-ATACGCTAC--AAAACTACGTAA-TGATACT---GTTACTAATTAGCATACTGTATTGTTTT----TATAT-ACATGTATATCCACTTC-ATGTACTGTC-TGTT-ATA---CAGTG--TTATAATAT-AC--GAATATAC---ATATATATGATTGTATGGAATATGCCAT---CTC-CACTT-TGAAATG--------------TT-ATTTAAGTTTATGCACTCTCCATATA--CTGTTCAATATTATTGT----GT-----ATGT-------T-ATGTA-AGTCCAATGAGCCGCATGG-----CT----CA-C-GGA-AA-TAAAGAAACTGA
gi|6 : tt-AGATATGCTAC--AAAACTACGTAA-TGATATTAATGTTACCAATTAGCACAATATACTGTTTTTACATACAT-ACATGTATTTCTAATTC-AAGTACTGT----TT-ATG---CACTC--TC-------------CATATAT---AC-------------------------T---GTT-CA--T-TA----G-----------------------------------------TATTTTGT---ATGTTA---------C-----ATGT---------ATGTA-AGTCCAATGAGCCGCATGG-----CT----TA-C-GGA-AA-TAAAGAAACT
gi|8 : ATACT---GTTACCAATTAGCACAATTTAATGTCTG----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A--------------------------T---CTT-CACTT-TG----GT-------------TT-A----------TGCACTCTCCATATA----------------TTT----GT-----ATGTGAC-ATGT-AGGTA-AGTCCAATGAGCCGCATGG-----CT----TA-C-GGA-AA-TAAAGAA
gi|7 : ATACT---GTTAC-AATTAGCACAATTTAATGTTTT----TACATAACATGTATTTCCAATTC-AAGTA-TGTC-TGTT-ATA---CAATG--TTATAATAT-AT--GAATATAT---A--------------------------T---CTT-CACTT-TG----GT-------------TT-A----------TGCACTCTCCATATAT-TTG-------------------------ATGTTAC-ATGT-A-GTA-AGT-CAATGAGCC-CATGG-----CT----TA-C-GGA-AA-TAAAGAAACTGA
gi|9 : GCATCGTT-TATT-AAAGATTAATG--TTAGAA-AT--T--CACTACAC---A--------------------------TGCTTTT-CATTT-GA----G--------------TTTA----------TACACTCTCCATATACGGTG--CAATATCATTTTCACTGT-----ATTGTAT-ATA--ATGCA-AGTCCTATGAGCTGCATGG-----CT----CA-C-GGC-AA-TAAAGAATCTGAa
gi|10 : ATGGTAT-AT--GGCCAT--------------------------------C---CTT-CACTTGTA----G--------------TTTA----------TGCACTCTCCATATATACTG-TCAATATT-TTTT----GTA----ATGTTACAATGA-ATGTA-AGTCCAATGAGCCACACAGGTTTCTT----TACC-GGAAAA-TAAAGAAACTGA
gi|11 : atatatatgattgcAACATGAT--GATGATATGCCA--------------------------T---CTT-CACTT-TG----AAAAGTTATTTAAGTTT-A----------TGCACTCTAAATATA--CTGTTCAATATTATTTT----GT-----ATAT-------T-ATGTA-AGTTTGATGAGCCGCATGG-----CT----CA-CAGA--AA-TAAAGAAACTGAaac
gi|12 : AC---A--------------------------T---CTT-TACTT-TG----AAATGTTATTTAAGTTT-A----------TGCACTCTCCATATACA--GTTCAATATTATTTT----GT-----ATGTTA--------TGCA-AGTCCAATGAACCGCATGG-----CT----CA-C-GGA-AA-TAAAGAAACTGAa
gi|14 : ----G--------------TT-A----------TGCTCTTTCCATATAC--TGTTCAATATTATTTT----GT-----ATGTTA--------TGTA-AGTCCAATGAGCCGCATGG-----CT----CA-C-GGA-AA-TAAAGGAACTGA
gi|16 : ACTATATT----GT-----ATGTAA-----T-ATATA-AGTCCATTGAGCCGCATGG-----CT----CA-C-GG------AAAAAAACTa
gi|19 : gttatttgaaatttattatcTTATTT-----GT-----ATAT----ATGTTGTGTATAGACCGATAAGCTGTA-AA-----CT----TA-A-GG--AAATAAAGAATCTaaaa
gi|15 : TACTTT----GTGTTCCATTTTAT-GTGT-ATATA-----CAATGAGC-ATATGG-----GT----CA-T-GG--AAATAAAGAATCT
gi|22 : ttgTTGT-ATTT-ATGTA-TATCCAATGAGCC-TGTGG-----CT----CA-C-aaacctagtaatctgtcaac
gi|17 : ataaTAA-ATGT-ATATA-TATCCAATGAGCC-TGTGG-----CT----CA-C-GGAAAA-TAAAGAATCTG
gi|21 : tatttaCCAATGAGCCGCATGG-----CTCACGTA-C-GGA-AA-TAAAGAAACTGagtctgacttagtactgcaa
gi|23 : AATGAGCCGCATGG-----CT----TA-C-GGA-AA-TAAAGAAACTGAcaa
gi|20 : ATGAGCCGCATGG-----CT----CA-C-GGA-AA-TAAAGAAACCGA
Alignments
lowQualScore : 1 2 1 1 1 1 1 1 4444 2 3333 222 1111 111 44444444444444444444444444 5555555555555555555 1111111111 44444 22222
lowQualScore : 5 4 3 0 5 5 5 5 4 3 5 5 2222 0 333 8 8 0 8 0 6666 8 0 8 8 88 5 1 99 555 99 6 999 1 99 6 888 1 1 0000 5 5 4 4 777 66 3 3 55 111 88888888888888888888888888 777 4 99 6666666666666666666 7 5555555555 00000 4 555 6666 77777 2 2 55555 2 2 55555 4444 22 2
lowQualScore : . . . . . . . . . . . . .... . ... . . . . . .... . . . . .. . . .. ... .. . ... . .. . ... . . .... . . . . ... .. . . .. ... .......................... ... . .. ................... . .......... ..... . ... .... ..... . . ..... . . ..... .... .. .
lowQualScore : 5 0 0 0 5 5 0 5 0 0 5 0 5555 0 000 0 0 8 0 8 8888 0 8 0 0 88 6 0 22 888 22 7 666 0 22 7 888 0 0 6666 0 0 4 0 000 11 6 6 00 000 55555555555555555555555555 000 0 55 5555555555555555555 3 9999999999 44444 2 000 1111 11111 9 9 11111 9 5 33333 5555 99 2
consensus : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCA-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
Reference ( family-1237 ) : AATATATCCTAGAAAAATTAGAATT-GCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATANNNAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCGC--GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|1 : AATAT-TCCTAGAAATATGAGAATTTGCAAA-TATTG-TAATTT-AAAC-GATATCGAAGA-GAAT-TCCACTTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTATTATA-CAAAACCA---ATGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAA-CTAAGTAATCT--AGTATAAATA---TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAACACAATTTAATGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATATC-TTGTTCAATATTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG--AATAAAGAAACTGGA
gi|10 : ATG-GTAT-AT--GGCCAT------C--------------------------CT---T-CACTTG-TA----G--------------TTTA----------TGCACTCTCCATATA-TACTGT-CAATATT-TTT---T----GT-----AAT-GTTACAATGAA-TGTAAGTCCAATGAGCCACACAGGTTTCTTT----ACCGGA-AAATAAAGAAACTGAA
gi|11 : atatatatgattgcA-ACATGAT--GATGATATGCCAT--------------------------CT---T-CACTT--TG----AAAAGTTATTTAAGTTT-A----------TGCACTCTAAATATA---CTGTTCAATATTATTT---T----GT-----A-T-AT-------TA-TGTAAGTTTGATGAGCCGCATGG-----CTC----AC--AG-AAATAAAGAAACTGAAaac
gi|12 : AC---AT--------------------------CT---T-TACTT--TG----AAATGTTATTTAAGTTT-A----------TGCACTCTCCATATA-C-A-GTTCAATATTATTT---T----GT-----A-T-GTTA--------TGCAAGTCCAATGAACCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAAa
gi|13 : AATATATCCTAGAAAAATTAGAATT-GCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATA
gi|14 : ----G--------------TT-A----------TGCTCTTTCCATATA-C--TGTTCAATATTATTT---T----GT-----A-T-GTTA--------TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGGAACTGAAga
gi|15 : TACTT---T----GTGTTCCA-T-TTTAT-GTGTA-TATA----CAATGAGC-ATATGG-----GTC----AT--GG-AAATAAAGAATCTAAAa
gi|16 : ttgACTATAT---T----GT-----A-T-GT-A--ATATA-T--AAGTCCATTGAGCCGCATGG-----CTC----AC--GG-----AAAAAAACTAAAcctagtaatctgtcaac
gi|17 : gttatttgaaatttattatcA--ATGTA-TATATATCCAATGAGCC-TGTGG-----CTC----AC--GGAAAATAAAGAATCTGAa
gi|18 : tatttataAAATATATCAA-AAAGTT-CTACTATA-C----------------ATA-AACTTGT-AA-TAC---------------AATG--TTAAAG-AACTAAGTAATCT--AG-GTgtctgacttagtactgcaa
gi|19 : TTATTTGTAT----AT-----A-T-GTTG---TGTA-T---AGACCGATAAGCTGTA-AA-----CTT----AA--GG-AAATAAAGAATCT
gi|2 : AATATATCAATAAAGTTTCTACTATAGCAAAACCGAA-GTGTTTATA-A-CTTGT-AA-TACT-TT-GAGTGTCATTAATG--TTAGAGA---TAAGTTATATTAAG-GTATATA----GAAATATGCTAC--AAAATTACGGTA-TGATACT---GTTACCAATTAG-A-AATTTAATGTTTT----TACAT-AGATATTATTC--ATTC--AGTATTGTC-TGTT-AT----CAGTGATTTAT--ATAA-ATTGAAATATGTA--AT--------------------------CT---TACACTT--TG----GT-------------TT-A----------TGCA-TCTCCATATA--------TAA-----------T----GT-----A-T-GTTA--CT----TGTAAGT-CAATGAGTCGCATGG-----CTG----AC--GG-AAAT-AAGAAA
gi|20 : gcATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACCGAA
gi|21 : attatacataatctttCCAATGAGCCGCATGG-----CTCACGTAC--GG-AAATAAAGAAACTGtc
gi|22 : --ATTTA-TGTATATCCAATGAGCC-TGTGG-----CTC----AC--caa
gi|23 : ataattgtAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|3 : --TTAAAATAACTAAGTAATCT--AG-GTAAATAT--CAA--TACGCTAC--AAAACTACGTAA-TGATACT---GTTACTAATTAGCATACTGTATTGTTTT----TATAT-ACATGTATATCCACTTC-ATGTACTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AC--GAATATAC---ATATATATGATTGTATGGAATATGCCATCT---C-CACTT--TGAAATG--------------TT-ATTTAAGTTTATGCACTCTCCATATA---CTGTTCAATATTATTG---T----GT-----A-T-GT-------TA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|4 : ttAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCACATGTGTTTATATAACTTGTAAA-TACTATTTGAGTGTCAATAATAGTTTAAAGAAACTAAGTAATCT--AG-GTAAATATACTAAGATATGCTACAAAAAACTACGTAATTGATACT---GTTACCAATTAGCACAATATACTG-TTT----TACAT-ACATGTATTTCCAATTCAAAGTATTGTCGTCTTAATA---CAGTG--TTATA-ATAT-AT--GAA-ATA
gi|5 : AAAATATATCAA-AAAGTT-CTACT-TA-CAAAACCAT--GTGTTTATA-AACTTGT-AAATACT-TTTGAGTGTCAATAATG--TTTAAGAAACTAAGTAATCT--AG-GTAAATATC-TAAGATATGCTA---AAAACTACGTAA-TGATA-T---GTTACCAATTAGCACAATATACTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TATT-ATA---CAGTG--TTATA-ATAT-AC--G
gi|6 : AGATATGCTAC--AAAACTACGTAA-TGATATTAATGTTACCAATTAGCACAATATACTGTTTTTACATACAT-ACATGTATTTCTAATTC-AAGTACTGT----TT-ATG---CA
gi|6 : T-ATA---CTGTT--TT-TACATAC-AT--ACATGTAT---TT--------------------------CTAATT-CAAGTACTG----T--------------TT-A----------TGCACTCTCCATATA-TACTGTTCATTAGTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTctctccatatatactgttcattagtattttgtatgttacatgtatgtaagtccaatgagccgcatggcttacggaaataaagaaact
gi|7 : agatatgctacaaaactacgtaatgatattaatgttaccaattagcacaaATACT---GTTAC-AATTAGCACAATTTAATGTTTT----TACATAACATGTATTTCCAATTC-AAGTA-TGTC-TGTT-ATA---CAATG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----G------A-T-GTTAC-ATGTA--GTAAGT-CAATGAGCC-CATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|8 : ATACT---GTTACCAATTAGCACAATTTAATGTCTG----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----GT-----A-T-GTGAC-ATGTA-GGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAa
gi|9 : GCATCGTT-TATT-AAAGATTAATG--TTAGA-A-AT--T--CACTACAC---ATGCT-----------------------TT---T-CATTT--GA----G--------------TTTA----------TACACTCTCCATATA-C-G-GTGCAATATCATTT---TCACTGT-----A-TTGT----ATATAATGCAAGTCCTATGAGCTGCATGG-----CTC----AC--GG-CAATAAAGAATCTGAA
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 2222 1 222222 222 1111 111 44444444444444444444444444 5555555555555555555 1111111111 44444 22222
lowQualScore : 5 1 1 5 5 5 5 5 1 1 5 5 4444 5 8 8 0 8 0 555555 8 0 8 8 88 5 1 99 555 99 6 999 1 99 6 888 1 1 0000 5 5 4 4 777 66 3 3 55 111 88888888888888888888888888 777 4 99 6666666666666666666 7 5555555555 00000 4 555 6666 77777 2 2 55555 2 2 55555 4444 22 2
lowQualScore : . . . . . . . . . . . . .... . . . . . . ...... . . . . .. . . .. ... .. . ... . .. . ... . . .... . . . . ... .. . . .. ... .......................... ... . .. ................... . .......... ..... . ... .... ..... . . ..... . . ..... .... .. .
lowQualScore : 5 0 0 5 5 5 0 5 0 0 5 0 0000 0 0 0 8 0 8 888888 0 8 0 0 88 6 0 22 888 22 7 666 0 22 7 888 0 0 6666 0 0 4 0 000 11 6 6 00 000 55555555555555555555555555 000 0 55 5555555555555555555 3 9999999999 44444 2 000 1111 11111 9 9 11111 9 5 33333 5555 99 2
consensus : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-A-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
Reference ( family-1237 ) : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-A-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|1 : AATAT-TCCTAGAAATATGAGAATTTGCAAA-TATTG-TAATTT-AAAC-GATATCGAAGA-GAAT-TCCACTTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTATTATA-CAAAACC-A-A--TGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAA-CTAAGTAATCT--AGTATAAATA---TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAACACAATTTAATGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATATC-TTGTTCAATATTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG--AATAAAGAAACTGGA
gi|10 : ATG-GTAT-AT--GGCCAT------C--------------------------CT---T-CACTTG-TA----G--------------TTTA----------TGCACTCTCCATATA-TACTGT-CAATATT-TTT---T----GT-----AAT-GTTACAATGAA-TGTAAGTCCAATGAGCCACACAGGTTTCTTT----ACCGGA-AAATAAAGAAACTGAA
gi|11 : atatatatgattgcA-ACATGAT--GATGATATGCCAT--------------------------CT---T-CACTT--TG----AAAAGTTATTTAAGTTT-A----------TGCACTCTAAATATA---CTGTTCAATATTATTT---T----GT-----A-T-AT-------TA-TGTAAGTTTGATGAGCCGCATGG-----CTC----AC--AG-AAATAAAGAAACTGAAaac
gi|12 : AC---AT--------------------------CT---T-TACTT--TG----AAATGTTATTTAAGTTT-A----------TGCACTCTCCATATA-C-A-GTTCAATATTATTT---T----GT-----A-T-GTTA--------TGCAAGTCCAATGAACCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAAa
gi|13 : AATATATCCTAGAAAAATTAGAATT-GCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATA
gi|14 : ----G--------------TT-A----------TGCTCTTTCCATATA-C--TGTTCAATATTATTT---T----GT-----A-T-GTTA--------TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGGAACTGAAga
gi|15 : TACTT---T----GTGTTCCA-T-TTTAT-GTGTA-TATA----CAATGAGC-ATATGG-----GTC----AT--GG-AAATAAAGAATCTAAAa
gi|16 : ttgACTATAT---T----GT-----A-T-GT-A--ATATA-T--AAGTCCATTGAGCCGCATGG-----CTC----AC--GG-----AAAAAAACTAAAcctagtaatctgtcaac
gi|17 : gttatttgaaatttattatcA--ATGTA-TATATATCCAATGAGCC-TGTGG-----CTC----AC--GGAAAATAAAGAATCTGAa
gi|18 : tatttataAAATATATCAA-AAAGTT-CTACTATA-C-----------------ATA-AACTTGT-AA-TAC---------------AATG--TTAAAG-AACTAAGTAATCT--AG-GTgtctgacttagtactgcaa
gi|19 : TTATTTGTAT----AT-----A-T-GTTG---TGTA-T---AGACCGATAAGCTGTA-AA-----CTT----AA--GG-AAATAAAGAATCT
gi|2 : AATATATCAATAAAGTTTCTACTATAGCAAAACCGA-A-GTGTTTATA-A-CTTGT-AA-TACT-TT-GAGTGTCATTAATG--TTAGAGA---TAAGTTATATTAAG-GTATATA----GAAATATGCTAC--AAAATTACGGTA-TGATACT---GTTACCAATTAG-A-AATTTAATGTTTT----TACAT-AGATATTATTC--ATTC--AGTATTGTC-TGTT-AT----CAGTGATTTAT--ATAA-ATTGAAATATGTA--AT--------------------------CT---TACACTT--TG----GT-------------TT-A----------TGCA-TCTCCATATA--------TAA-----------T----GT-----A-T-GTTA--CT----TGTAAGT-CAATGAGTCGCATGG-----CTG----AC--GG-AAAT-AAGAAA
gi|20 : gcATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACCGAA
gi|21 : attatacataatctttCCAATGAGCCGCATGG-----CTCACGTAC--GG-AAATAAAGAAACTGtc
gi|22 : --ATTTA-TGTATATCCAATGAGCC-TGTGG-----CTC----AC--caa
gi|23 : ataattgtAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|3 : --TTAAAATAACTAAGTAATCT--AG-GTAAATAT--CAA--TACGCTAC--AAAACTACGTAA-TGATACT---GTTACTAATTAGCATACTGTATTGTTTT----TATAT-ACATGTATATCCACTTC-ATGTACTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AC--GAATATAC---ATATATATGATTGTATGGAATATGCCATCT---C-CACTT--TGAAATG--------------TT-ATTTAAGTTTATGCACTCTCCATATA---CTGTTCAATATTATTG---T----GT-----A-T-GT-------TA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|4 : ttAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-ACATGTGTTTATATAACTTGTAAA-TACTATTTGAGTGTCAATAATAGTTTAAAGAAACTAAGTAATCT--AG-GTAAATATACTAAGATATGCTACAAAAAACTACGTAATTGATACT---GTTACCAATTAGCACAATATACTG-TTT----TACAT-ACATGTATTTCCAATTCAAAGTATTGTCGTCTTAATA---CAGTG--TTATA-ATAT-AT--GAA-ATA
gi|5 : AAAATATATCAA-AAAGTT-CTACT-TA-CAAAACC-A-T-GTGTTTATA-AACTTGT-AAATACT-TTTGAGTGTCAATAATG--TTTAAGAAACTAAGTAATCT--AG-GTAAATATC-TAAGATATGCTA---AAAACTACGTAA-TGATA-T---GTTACCAATTAGCACAATATACTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TATT-ATA---CAGTG--TTATA-ATAT-AC--G
gi|6 : AGATATGCTAC--AAAACTACGTAA-TGATATTAATGTTACCAATTAGCACAATATACTGTTTTTACATACAT-ACATGTATTTCTAATTC-AAGTACTGT----TT-ATG---CA
gi|6 : T-ATA---CTGTT--TT-TACATAC-AT--ACATGTAT---TT--------------------------CTAATT-CAAGTACTG----T--------------TT-A----------TGCACTCTCCATATA-TACTGTTCATTAGTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTctctccatatatactgttcattagtattttgtatgttacatgtatgtaagtccaatgagccgcatggcttacggaaataaagaaact
gi|7 : agatatgctacaaaactacgtaatgatattaatgttaccaattagcacaaATACT---GTTAC-AATTAGCACAATTTAATGTTTT----TACATAACATGTATTTCCAATTC-AAGTA-TGTC-TGTT-ATA---CAATG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----G------A-T-GTTAC-ATGTA--GTAAGT-CAATGAGCC-CATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|8 : ATACT---GTTACCAATTAGCACAATTTAATGTCTG----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----GT-----A-T-GTGAC-ATGTA-GGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAa
gi|9 : GCATCGTT-TATT-AAAGATTAATG--TTAGA-A-AT--T--CACTACAC---ATGCT-----------------------TT---T-CATTT--GA----G--------------TTTA----------TACACTCTCCATATA-C-G-GTGCAATATCATTT---TCACTGT-----A-TTGT----ATATAATGCAAGTCCTATGAGCTGCATGG-----CTC----AC--GG-CAATAAAGAATCTGAA
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 2222 1 222222 222 1111 111 44444444444444444444444444 5555555555555555555 1111111111 44444 22222
lowQualScore : 5 1 1 5 5 5 5 5 1 1 5 5 4444 5 8 8 0 8 0 555555 8 0 8 8 88 5 1 99 555 99 6 999 1 99 6 888 1 1 0000 5 5 4 4 777 66 3 3 55 111 88888888888888888888888888 777 4 99 6666666666666666666 7 5555555555 00000 4 555 6666 77777 2 2 55555 2 2 55555 4444 22 2
lowQualScore : . . . . . . . . . . . . .... . . . . . . ...... . . . . .. . . .. ... .. . ... . .. . ... . . .... . . . . ... .. . . .. ... .......................... ... . .. ................... . .......... ..... . ... .... ..... . . ..... . . ..... .... .. .
lowQualScore : 5 0 0 5 5 5 0 5 0 0 5 0 0000 0 0 0 8 0 8 888888 0 8 0 0 88 6 0 22 888 22 7 666 0 22 7 888 0 0 6666 0 0 4 0 000 11 6 6 00 000 55555555555555555555555555 000 0 55 5555555555555555555 3 9999999999 44444 2 000 1111 11111 9 9 11111 9 5 33333 5555 99 2
consensus : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-A-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
Reference ( family-1237 ) : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-A-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|1 : AATAT-TCCTAGAAATATGAGAATTTGCAAA-TATTG-TAATTT-AAAC-GATATCGAAGA-GAAT-TCCACTTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTATTATA-CAAAACC-A-A--TGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAA-CTAAGTAATCT--AGTATAAATA---TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAACACAATTTAATGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATATC-TTGTTCAATATTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG--AATAAAGAAACTGGA
gi|10 : ATG-GTAT-AT--GGCCAT------C--------------------------CT---T-CACTTG-TA----G--------------TTTA----------TGCACTCTCCATATA-TACTGT-CAATATT-TTT---T----GT-----AAT-GTTACAATGAA-TGTAAGTCCAATGAGCCACACAGGTTTCTTT----ACCGGA-AAATAAAGAAACTGAA
gi|11 : atatatatgattgcA-ACATGAT--GATGATATGCCAT--------------------------CT---T-CACTT--TG----AAAAGTTATTTAAGTTT-A----------TGCACTCTAAATATA---CTGTTCAATATTATTT---T----GT-----A-T-AT-------TA-TGTAAGTTTGATGAGCCGCATGG-----CTC----AC--AG-AAATAAAGAAACTGAAaac
gi|12 : AC---AT--------------------------CT---T-TACTT--TG----AAATGTTATTTAAGTTT-A----------TGCACTCTCCATATA-C-A-GTTCAATATTATTT---T----GT-----A-T-GTTA--------TGCAAGTCCAATGAACCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAAa
gi|13 : AATATATCCTAGAAAAATTAGAATT-GCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATA
gi|14 : ----G--------------TT-A----------TGCTCTTTCCATATA-C--TGTTCAATATTATTT---T----GT-----A-T-GTTA--------TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGGAACTGAAga
gi|15 : TACTT---T----GTGTTCCA-T-TTTAT-GTGTA-TATA----CAATGAGC-ATATGG-----GTC----AT--GG-AAATAAAGAATCTAAAa
gi|16 : ttgACTATAT---T----GT-----A-T-GT-A--ATATA-T--AAGTCCATTGAGCCGCATGG-----CTC----AC--GG-----AAAAAAACTAAAcctagtaatctgtcaac
gi|17 : gttatttgaaatttattatcA--ATGTA-TATATATCCAATGAGCC-TGTGG-----CTC----AC--GGAAAATAAAGAATCTGAa
gi|18 : tatttataAAATATATCAA-AAAGTT-CTACTATA-C-----------------ATA-AACTTGT-AA-TAC---------------AATG--TTAAAG-AACTAAGTAATCT--AG-GTgtctgacttagtactgcaa
gi|19 : TTATTTGTAT----AT-----A-T-GTTG---TGTA-T---AGACCGATAAGCTGTA-AA-----CTT----AA--GG-AAATAAAGAATCT
gi|2 : AATATATCAATAAAGTTTCTACTATAGCAAAACCGA-A-GTGTTTATA-A-CTTGT-AA-TACT-TT-GAGTGTCATTAATG--TTAGAGA---TAAGTTATATTAAG-GTATATA----GAAATATGCTAC--AAAATTACGGTA-TGATACT---GTTACCAATTAG-A-AATTTAATGTTTT----TACAT-AGATATTATTC--ATTC--AGTATTGTC-TGTT-AT----CAGTGATTTAT--ATAA-ATTGAAATATGTA--AT--------------------------CT---TACACTT--TG----GT-------------TT-A----------TGCA-TCTCCATATA--------TAA-----------T----GT-----A-T-GTTA--CT----TGTAAGT-CAATGAGTCGCATGG-----CTG----AC--GG-AAAT-AAGAAA
gi|20 : gcATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACCGAA
gi|21 : attatacataatctttCCAATGAGCCGCATGG-----CTCACGTAC--GG-AAATAAAGAAACTGtc
gi|22 : --ATTTA-TGTATATCCAATGAGCC-TGTGG-----CTC----AC--caa
gi|23 : ataattgtAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|3 : --TTAAAATAACTAAGTAATCT--AG-GTAAATAT--CAA--TACGCTAC--AAAACTACGTAA-TGATACT---GTTACTAATTAGCATACTGTATTGTTTT----TATAT-ACATGTATATCCACTTC-ATGTACTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AC--GAATATAC---ATATATATGATTGTATGGAATATGCCATCT---C-CACTT--TGAAATG--------------TT-ATTTAAGTTTATGCACTCTCCATATA---CTGTTCAATATTATTG---T----GT-----A-T-GT-------TA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|4 : ttAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-ACATGTGTTTATATAACTTGTAAA-TACTATTTGAGTGTCAATAATAGTTTAAAGAAACTAAGTAATCT--AG-GTAAATATACTAAGATATGCTACAAAAAACTACGTAATTGATACT---GTTACCAATTAGCACAATATACTG-TTT----TACAT-ACATGTATTTCCAATTCAAAGTATTGTCGTCTTAATA---CAGTG--TTATA-ATAT-AT--GAA-ATA
gi|5 : AAAATATATCAA-AAAGTT-CTACT-TA-CAAAACC-A-T-GTGTTTATA-AACTTGT-AAATACT-TTTGAGTGTCAATAATG--TTTAAGAAACTAAGTAATCT--AG-GTAAATATC-TAAGATATGCTA---AAAACTACGTAA-TGATA-T---GTTACCAATTAGCACAATATACTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TATT-ATA---CAGTG--TTATA-ATAT-AC--G
gi|6 : AGATATGCTAC--AAAACTACGTAA-TGATATTAATGTTACCAATTAGCACAATATACTGTTTTTACATACAT-ACATGTATTTCTAATTC-AAGTACTGT----TT-ATG---CA
gi|6 : T-ATA---CTGTT--TT-TACATAC-AT--ACATGTAT---TT--------------------------CTAATT-CAAGTACTG----T--------------TT-A----------TGCACTCTCCATATA-TACTGTTCATTAGTATTT---T----GT-----A-T-GTTAC-ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTctctccatatatactgttcattagtattttgtatgttacatgtatgtaagtccaatgagccgcatggcttacggaaataaagaaact
gi|7 : agatatgctacaaaactacgtaatgatattaatgttaccaattagcacaaATACT---GTTAC-AATTAGCACAATTTAATGTTTT----TACATAACATGTATTTCCAATTC-AAGTA-TGTC-TGTT-ATA---CAATG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----G------A-T-GTTAC-ATGTA--GTAAGT-CAATGAGCC-CATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|8 : ATACT---GTTACCAATTAGCACAATTTAATGTCTG----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----GT-------------TT-A----------TGCACTCTCCATATA-----------------TT---T----GT-----A-T-GTGAC-ATGTA-GGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAa
gi|9 : GCATCGTT-TATT-AAAGATTAATG--TTAGA-A-AT--T--CACTACAC---ATGCT-----------------------TT---T-CATTT--GA----G--------------TTTA----------TACACTCTCCATATA-C-G-GTGCAATATCATTT---TCACTGT-----A-TTGT----ATATAATGCAAGTCCTATGAGCTGCATGG-----CTC----AC--GG-CAATAAAGAATCTGAA
blockSeqs : A A T . A A G A A A T G . . T T G ACATG T A A TA T T GT TAA TA . TAC A AA T AAT T A TACA A A G A GAT AT C G TG GCC ATATATGATTGTATGGAATATGCCAT AAT A AC AAAAGTTATTTAAGT T TTTAAGTTTA TACT T GTA CACT GTTCC A T TACAA G A GTTTC ACGT CG A
blockSeqs : . . . GAAG . . . T T A . AAA . . TC G . . . G T . . . . . . . . . . A GCT . . G AAATGTTATTTAAGT T . TACT T . . . . . TATG G . . . . .
blockSeqs : . . . ATG . . . T . A . AAA . . T G . . . A C . . . . . . . . . . . . . . . AAATG . . CT T . . . . . TACA A . . . . .
blockSeqs : . . . . . . . . . . . AA . . . G . . . A C . . . . . . . . . . . . . . . GT . . CA T . . . . . TACA G . . . . .
blockSeqs : . A . . . . . . A C . . . . . . . . . . . . . . . GT . . CT T . . . . . GACA G . . . . .
blockSeqs : . T A . . . . . . . . . . . . . . . GT . . CT G . . . . . TAC T . . . . .
blockSeqs : . T A . . . . . . . . . . . . . . . G . . CG . . . . . . TA G . . . . .
blockSeqs : . . . . . . . . . . . . G . . . . . . . . . TA G . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . AA G . . . . .
blockSeqs : . . . G . . . . . . . . . TG A . . . . .
blockSeqs : . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : AG**** AAA T** CT*** TACA*
originalCons : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC-A-A-GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATA-C-CTGTTCAATATTATTT---T----GT-----A-T-GTTA--ATGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
finalCons : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACCAG----TGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACAT-ACATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATA-ATAT-AT--GAATATAT---AT--------------------------CT---T-CACTT--TG----G--------------TT-A----------TGCACTCTCCATATACT---GTTCAATATTATTT---T----GT-----A-T-GTTACA-TGTA-TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
Alignments
lowQualScore : 1 1 1 1 1 1 1 1 2222 1 222222 222 1111 44444444444444444444444444444444 555555555555555555555555555555555 1111111 11111 22222222
lowQualScore : 5 1 1 5 5 5 5 5 1 1 5 5 4444 5 8 8 0 8 0 888888 8 0 8 8 88 5 1 99 555 99 6 999 1 99 6 888 1 1 0000 5 5 4 4 777 66 3 55 99999999999999999999999999999999 4 4 999999999999999999999999999999999 55 6666666 11 6666 00000 00000000 0 55555 4444 33 2
lowQualScore : . . . . . . . . . . . . .... . . . . . . ...... . . . . .. . . .. ... .. . ... . .. . ... . . .... . . . . ... .. . .. ................................ . . ................................. .. ....... .. .... ..... ........ . ..... .... .. .
lowQualScore : 5 0 0 5 5 5 0 5 0 0 5 0 0000 0 0 0 8 0 8 888888 0 8 0 0 88 6 0 22 888 22 7 666 0 22 7 888 0 0 6666 0 0 4 4 888 11 6 00 44444444444444444444444444444444 0 0 333333333333333333333333333333333 00 6666666 88 5555 88888 99999999 1 66666 7777 11 4
consensus : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC--A---GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACATA-CATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A-T--------------------------CTT-CACTT-TG----G--------------TT-A----------TGCACTCTCC--ATATA--CTGTTCAATATTATTTT----GT-----ATGTTAC-ATGTATGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
Reference ( family-1237 ) : AATATATCCTAGAAANATNAGAATTTGCAAAATATTGATAATTTGAAACAGANATNGAAGATGAATGTCCACCTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC--A---GTGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAAACTAAGTAATCT--AG-GTAAATAT--TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAGCACAATNTANTGTTTT----TACATA-CATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A-T--------------------------CTT-CACTT-TG----G--------------TT-A----------TGCACTCTCC--ATATA--CTGTTCAATATTATTTT----GT-----ATGTTAC-ATGTATGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|1 : AATAT-TCCTAGAAATATGAGAATTTGCAAA-TATTG-TAATTT-AAAC-GATATCGAAGA-GAAT-TCCACTTTATTCTAAGTTGTCCTTATACAATGAAATAAGAAGAAAATATATCAA-AAAGTT-CTATTATA-CAAAACC--A---ATGTTTATA-AACTTGT-AA-TACT-TTTGAGTGTCAATAATG--TTAAAGAA-CTAAGTAATCT--AGTATAAATA---TAAGATATGCTAC--AAAACTACGTAA-TGATACT---GTTACCAATTAACACAATTTAATGTTTT----TACATA-CATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A-T--------------------------CTT-CACTT-TG----G--------------TT-A----------TGCACTCTCC--ATATATCTTGTTCAATATTATTTT----GT-----ATGTTAC-ATGTATGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG--AATAAAGAAACTGGA
gi|10 : ATGGTAT-AT--GGCCAT-------C--------------------------CTT-CACTTGTA----G--------------TTTA----------TGCACTCTCCATATATA--CTG-TCAATATT-TTTT----GTA----ATGTTACAATGAATGTAAGTCCAATGAGCCACACAGGTTTCTTT----ACCGGA-AAATAAAGAAACTGAA
gi|11 : atatatatgattgcAACATGAT--GATGATATGCCA-T--------------------------CTT-CACTT-TG----AAAAGTTATTTAAGTTT-A----------TGCACTCTAA--ATATA--CTGTTCAATATTATTTT----GT-----ATAT-------TATGTAAGTTTGATGAGCCGCATGG-----CTC----AC--AG-AAATAAAGAAACTGAAaac
gi|12 : AC---A-T--------------------------CTT-TACTT-TG----AAATGTTATTTAAGTTT-A----------TGCACTCTCC--ATATA--CAGTTCAATATTATTTT----GT-----ATGTTA-------TGCAAGTCCAATGAACCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAAa
gi|13 : AATATATCCTAGAAAAATTAGAATT-GCAAAATATTGATAATTTGAAACAGAAATAGAAGATGAATGTTCACCTTAT----AGTTGTCCTTATA-AATGAAATA
gi|14 : ----G--------------TT-A----------TGCTCTTTCC--ATATA--CTGTTCAATATTATTTT----GT-----ATGTTA-------TGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGGAACTGAAga
gi|15 : TACTTT----GTGTTCCATTTTAT-GTGTATATA----CAATGAGC-ATATGG-----GTC----AT--GG-AAATAAAGAATCTAAAa
gi|16 : ttgACTATATT----GT-----ATGTAA-----TATATAAGTCCATTGAGCCGCATGG-----CTC----AC--GG-----AAAAAAACTAAAcctagtaatctgtcaac
gi|17 : gttatttgaaatttattatcTAA-ATGTATATATATCCAATGAGCC-TGTGG-----CTC----AC--GGAAAATAAAGAATCTGAa
gi|18 : tatttaAAATATATCAA-AAAGTT-CTACTATA-C------------------ATA-AACTTGT-AA-TAC---------------AATG--TTAAAG-AACTAAGTAATCT--AG-GTgtctgacttagtactgcaa
gi|2 : AATATATCAATAAAGTTTCTACTATAGCAAAACCGAA---GTGTTTATA-A-CTTGT-AA-TACT-TT-GAGTGTCATTAATG--TTAGAGA---TAAGTTATATTAAG-GTATATA----GAAATATGCTAC--AAAATTACGGTA-TGATACT---GTTACCAATTAG-A-AATTTAATGTTTT----TACATA-GATATTATTC--ATTC--AGTATTGTC-TGTT-AT----CAGTGATTTAT-ATAA-ATTGAAATATGTA--A-T--------------------------CTTACACTT-TG----GT-------------TT-A----------TGCA-TCTCC--ATATA-------TAA--------T----GT-----ATGTTAC--T---TGTAAGT-CAATGAGTCGCATGG-----CTG----AC--GG-AAAT-AAGAAA
gi|20 : gcATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACCGAA
gi|21 : attatacataatctttCCAATGAGCCGCATGG-----CTCACGTAC--GG-AAATAAAGAAACTGtc
gi|22 : TTGT-ATTTATGTATATCCAATGAGCC-TGTGG-----CTC----AC--caa
gi|23 : ataaAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|3 : --TTAAAATAACTAAGTAATCT--AG-GTAAATAT--CAA--TACGCTAC--AAAACTACGTAA-TGATACT---GTTACTAATTAGCATACTGTATTGTTTT----TATATA-CATGTATATCCACTTC-ATGTACTGTC-TGTT-ATA---CAGTG--TTATAATAT-AC--GAATATAC---A-TATATATGATTGTATGGAATATGCCATCTC-CACTT-TGAAATG--------------TT-ATTTAAGTTTATGCACTCTCC--ATATA--CTGTTCAATATTATTGT----GT-----ATGT-------TATGTAAGTCCAATGAGCCGCATGG-----CTC----AC--GG-AAATAAAGAAACTGAA
gi|4 : ttAAAAAATATATCAA-AAAGTT-CTACTATA-CAAAACC--ACATGTGTTTATATAACTTGTAAA-TACTATTTGAGTGTCAATAATAGTTTAAAGAAACTAAGTAATCT--AG-GTAAATATACTAAGATATGCTACAAAAAACTACGTAATTGATACT---GTTACCAATTAGCACAATATACTG-TTT----TACATA-CATGTATTTCCAATTCAAAGTATTGTCGTCTTAATA---CAGTG--TTATAATAT-AT--GAA-ATA
gi|5 : AAAATATATCAA-AAAGTT-CTACT-TA-CAAAACC--AT--GTGTTTATA-AACTTGT-AAATACT-TTTGAGTGTCAATAATG--TTTAAGAAACTAAGTAATCT--AG-GTAAATATC-TAAGATATGCTA---AAAACTACGTAA-TGATA-T---GTTACCAATTAGCACAATATACTGTTTT----TACATA-CATGTATTTCCAATTC-AAGTATTGTC-TATT-ATA---CAGTG--TTATAATAT-AC--G
gi|6 : AGATATGCTAC--AAAACTACGTAA-TGATATTAATGTTACCAATTAGCACAATATACTGTTTTTACATACATA-CATGTATTTCTAATTC-AAGTACTGT----TT-ATG---CACTC--TC-------------CATATAT---ACT--------------------------GTT-CA--T-TA----G-----------------------------------------TATT--TTGT---ATGTTA---------C-----ATGT----ATGT----AAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAACT
gi|7 : ATACT---GTTAC-AATTAGCACAATTTAATGTTTT----TACATAACATGTATTTCCAATTC-AAGTAT-GTC-TGTT-ATA---CAATG--TTATAATAT-AT--GAATATAT---A-T--------------------------CTT-CACTT-TG----G--------------TTTA----------TGCACTCTCC--ATATA----------------TTT----G------ATGTTAC-ATGTA-GTAAGTC-AATGAGCC-CATGG-----CTT----AC--GG-AAATAAAGAAACTGAA
gi|8 : ATACT---GTTACCAATTAGCACAATTTAATGTCTG----TACATA-CATGTATTTCCAATTC-AAGTATTGTC-TGTT-ATA---CAGTG--TTATAATAT-AT--GAATATAT---A-T--------------------------CTT-CACTT-TG----G--------------TTTA----------TGCACTCTCC--ATATA----------------TTT----GT-----ATGTGAC-ATGTAGGTAAGTCCAATGAGCCGCATGG-----CTT----AC--GG-AAATAAAGAAa
gi|9 : GCATCGTT-TATT-AAAGATTAATG--TTAGAA-AT--T--CACTACAC---A-TGCT-----------------------TTT-CATTT-GA----G--------------TTTA----------TACACTCTCC--ATATA--CGGTGCAATATCATTTTCACTGT-----ATTGTAT-ATA-ATGCAAGTCCTATGAGCTGCATGG-----CTC----AC--GG-CAATAAAGAATCTGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTATTTGTATATATGTTGTGTATAGACCGATAAGCTGTAAACTTAAGGAAATAAAGAATCT