lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 2222222 11 777777777777777777777777777777777777777777777777777777777 2222222222 11 666666666666666666666666666666666666666 2222222222222222 222222222222222222222222222222222222222 111 22 2 22 22 44444444444 111111 5555555555555555555555555 11111111111111111111 5555555555555555555555555555555 333333 222222222222222222222222222222 11111 1
lowQualScore : 8 4 3333333 5 5 5 5 5 55 4 4 33 8888 4 777 4 777 8 4 777777777777777777777777777777777777777777777777777777777 66 4 66 4 8888888888 4 4 00 4 4 4 222222222222222222222222222222222222222 2 3 8888888888888888 6 4 4 4 5 0 777777777777777777777777777777777777777 222 66 4 77 4 2 4 4 4 4 00 5 4 99 1 3 7 3 66 3 44 44 3 3 6 3 8 0 3 88888888888 3 666 000000 2222222222222222222222222 1 8 4 4 44444444444444444444 4 4 4 4 8888 1 8888 4 4 3 88 7777 99999 3 55 6 4 4 4 4 2222222222222222222222222222222 55 333333 888888888888888888888888888888 66666 3 7777 3 0 0 4 4 66 8
lowQualScore : . . ....... . . . . . .. . . .. .... . ... . ... . . ......................................................... .. . .. . .......... . . .. . . . ....................................... . . ................ . . . . . . ....................................... ... .. . .. . . . . . . .. . . .. . . . . .. . .. .. . . . . . . . ........... . ... ...... ......................... . . . . .................... . . . . .... . .... . . . .. .... ..... . .. . . . . . ............................... .. ...... .............................. ..... . .... . . . . . .. .
lowQualScore : 0 3 6666666 7 0 0 0 0 22 4 0 55 5555 0 000 0 000 0 0 888888888888888888888888888888888888888888888888888888888 11 4 11 4 4444444444 4 4 66 4 4 4 888888888888888888888888888888888888888 2 1 9999999999999999 6 4 4 4 0 8 666666666666666666666666666666666666666 222 11 4 77 4 2 4 4 4 4 44 5 0 00 6 6 3 6 66 1 22 22 1 1 2 1 6 3 3 88888888888 6 444 555555 1111111111111111111111111 6 3 0 0 99999999999999999999 0 0 0 0 5555 6 5555 0 0 6 66 7777 11111 6 55 0 0 0 0 0 3333333333333333333333333333333 55 000000 333333333333333333333333333333 44444 6 7777 6 4 9 4 4 11 9
consensus : ATTG-TGTTG--A---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT-----A--AA---------------AAN-------C----------CTT-TTA--CAG-TCA--AA-C-----AA---TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T---AAA-G-GT-T--GAAT-CAAGC-AAAGTCGAGATGTC---------TAT----CGAGGAAAGGTTT-CG-CG-CCTTCTAAAC-ACTGACA-------AC-G--A------------A-----------AAAGTTTTACT---GCG--CTC-GGCG-GTGA-TTTCT-CA-AT-CCGC-TTC--GGTGGATAAG-A-CTTCACAAGA-TGCAACT-GTA-GTGGCGCCAAAAA-G--T--G-T-A-GGA-CAAGGCGAT-G-----ATG---TTGC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGATC----CCGAT----T-T-A-GTCG-GC----G-----AT-CTCGTT--TTGACGC-AC-A-GCC-TTTGTCCAACTTCGAGAT--------A-CG---------ATTAAA-TCATCGATA--AC-GA---CAAAA-----------TA-CTT-T-----------CTT-----GGT-TT----TA-TTTNTATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( gi|5 ) : ATTG-TGTTT--A---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT-----A--AA---------------AAT-------T----------CTT-TTA--CAG-TCA--AA-C-----TA---TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T---AAG-G-GT-T--GAAT-CAAGT-AAAGTCGAGATGTC---------TGT----CAAGGAAAGGTTT-CG-CG-CCTTCTAAAC-ACTGACG-------AC-----------------A-----------AAAGTTTTACT---GCG--CTC-GGCGTGTGA-TT-CT-CA-AT-CCGC-TTCT-GGTGGACAAG-A-CTTCACAAGA-TGCAACT-GTA-GTGG-GCCAAAAA-G--T--G-T-A-GGA-CAAGGCGAT-GC---AATG---TTGC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGATC----CCGAT----T-T-A-GTCA-GC----G-----AT-CTCGTT--TTGATGC-AC-A-GCC-TTTGTCCAACTTTGAGA---------A-CG---------ATTAGA-T-ATCGATA--ACAAA---CAAAA-----------TA-TGT-T-----------CTT-----GGT-TT----TA-TTTATATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|6 : ATTG-TTTTC--A---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGTTC---A-GTAAA-AGAAA-----ATGAAAAA--AA---------------AAT-------T---------------TA--CA--TCA--AAAC-----AA---TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-TAA----A----------------------AT-C-------------GATGTC---------TAT----CGAGGAAAGATTT-CG-CG-CCTTCTAAAC-ACTGACACATGAGCACTGAAAA-----------A-----------AAAGTTT-ACT---GCG--CTC-GGCG-GT-A-TT-CT-CAGAT-CCGC-TTCA-GGTAGATAAG-AACTTCACAAGA-TGCAACT-GTA-GTGG--CCAAAAA-G--T--G-T-A-AGA-CAAGG-----------ATG---TTGCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA-A---------GAA--CA--------A-TTTCTAATGAAC-TT-CGATC----CCGAT----T---A-GTCG-CC----G-----AT-CTTGTT--T-GACGC-AC-A-GTC-TTTGTCCAACTTCGAGAT--------A-CG---------AT-AAA-TCATCGATA--ACGA----CAATA-----------TA-CTT-T-----------CT------GGT-TT----TA-TTTATA--TATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|2 : ATTG-T-TTTGAA---T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AA-----A--AACAAAAAAAAAAAAAAAAA-------C----------CTG-TTA--CAG-TCA--AA-C-----AA---TTATTTAA-TCACTGT-CT--CTG-T-TCCCCT-TAA----A----T---CGA-T-GT-T--TTAT-C--------GTTG--------------------------GAAAAGGTTT-CG-CG-CCTTCTAAAC-CCTGACA-------AC-----------------ATAAGCACGAAAAAAGTTTTACT---GCG--CTC-GGCG-GTGA-TTTCT-CA-AT-CCGC-TTC--GGTGGATAAG-A----------------ACT-GTA--TGGCGCCAAAA--G--T--G-T-A-GGA-CAAGGCGAT-G-----------TTGC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GATC----C-GAT----T-T-A-GT-G-GC----G-----AT-CTCGTT--TTGACGC-AC-A-GCC-TTTGTCCAACTTCGAGAT--------A-CG---------ATTAAATT-ATCGATA--AC-GA---CAAAACTTTTGGGGTTTA-TTT-TTATATATATACCTT-----GGT-TA----TATTTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAt
gi|4 : ATTG-TGTTG--A---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGTTC---A-G-AAA-CAAAATA---AA-----A--AA---------------AAA-------A----------CTT-T-A--CAG-TCA--AA-C-----AA---TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-TAA----AAAT-C---AAA-A-GG-T--GAATTCAAGC-AA-GTTGAGATGTC---------TAT----CA-GGAAAGGTTTTCA-CG-CCTTCTAAACCACTGACG-------ACCGTGAGCATGCACTGAAA-----------AAAGTTTTACCA--GCG--CTC-GGCCAGTGA-TTTCT-CA-TT-CCGCCTTCTAGGTGGACAAG-A-CTTCA-AAGACTGCAACT-GTA-GTGGCGCCAAAAA-G--T--G-TTA-GGAACAAGGCGAT-G-----------TTGC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-ATC----CCGAT----T-TTA-ATC---C----GGTTGCAT-CTTGTT--TTGACGCCAC-A-ACA-TTTGTCCAGCTTTGAGAT--------A-CG---------ATTAAA-TCATCCAGA--AACAA---CAAAA-----------TA-CTT-T-----------CTTG----GGTGTG----TA-TTT-TATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|12 : ATTG-TTTTG--A---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT-----A--AA---------------AAAAAAAAAAC----------CTT-TTA--GAG-TCA--AA-C-----AA---TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-TAA--------------------------AAT-C-------------GATGTC---------TAT----CGAGGAAAGGTTT-TG-TG-CCTTCTAAAC-Atgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|15 : ATTGCTGTTG--AATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T--TC---AAGTAAAACAAAA-----GTT----A--AA---------------AAC-------T--------------TTA--CAG-TCA--AA-C-----AA---T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----
gi|3 : gGTTG--A---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GTTC---A-GTAA--CAAAA-----AT-----ACAAA---------------AAT-------T----------CTT-TTA--CAG-TCA--AA-C-----AAA--TTATTTAAGTCACTGTTCT--CCG-T-C-CCCC-TAA----AATCAT---AAA-G-GTGTCGGAAT-CAAGTCAAAGTCGAGATGTA---------TAT----CGAGGAAAGGTTT-TG-C--CCTTCCTAAC-AC-GACA-------AA-----------------C-----------AAAGTTTTACT---GTG--CT---G-GTGTGA-TTTCTGCA-ATTCCGC-TTCT-GGTGGACAAGGA-CTTCACA-GA--GCAACT-GT--GTGGCACCAAAAAAG--TTCG-T-A-GGA-CAAGGCGATCGC---ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGATC----C--AT----T-T-AAGTCG-GC----G-----ATTCTCGTT--TTGACGC-AC-A-GCCCTTTGTC--ACTTTGAGATAGATTAGAATCA---------ATTAGA-TGATCGATA--ACGA----CAAAA-----------TA-CCT-T-----------CTTT----GGT-TT----TA-TT-ACAGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAatcac
gi|11 : tgGTTTTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTTTC---A-GTAAA-CAAAA-----A------A--AA---------------Atgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCCAT-----A--AAATCTCG---------AAT-------TAGATATTTAATTTGTTAGGCAGATCAGGAA-CATGATTACAATTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-AAA----A----TCACAAGCGCGT-T--GAAT-CAAG--AAAGTTGAGATGTCATTACAATTCGA----CTAGGAAAGGTTT-CGCCGTCCTTCTAcaaaaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----ATTAA--A--AA---------------AAA-------A----------CTT-TTA--CAG-TCA--AA-C-----AA---CTATTTAA-TCACT---------G-T-CTCCCC-TAAAATCA----C---AAG-G-GT-T--GAAT-CAAGC-AAAGTCGAGATGTC---------TATCGTCCGAGGAAAGGTTT-CG-CG-GCTTCTAAAC-Ataagccagatgtgggcacggaacgccttgaggtacaacaatagaaatatagttttttactcgagtggcctcaggcggtgattctcaatccgcttcagaaaggtggacaagatgaacttgtaagtggcgcaaaaaggttgatatggacaaagggtgatgtggcccgaaacgaaaaagccatattctattttaatgaacattcgatcggacccgataagatatagtcaagctcaagattcgttatttgacgcacaagcctttgtccaactttgagataacgatacgacaaatgccaaaatctatgagcttatcttttggtatttgtattagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTTTC---A-ATAAA-AAAAA-----AA-----A--AA---------------AAA-------C----------CTG-TTA--CAG-TCA--AA-C-----AA---TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTTAA----A----T---
gi|8 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaa-G-GT-C--GAAT-CAAGT-AAAGTCGAGATGTA---------TAT----CGAGGAAAGGTTT-TG-CA-CCTTCTTAAC-ACTGACA-------AC-----------------A-----------AAAGTTTTACT---GTG--CTT-GGC-TGTGATTT-CT-CA-AT-CCGC-TTCT-GGTGGACAAG-A-CTTCACAAGA-TGCAACT-GTA-GTGG-ACCAAAAA-G--T--G-T-A-GGA-CAAGGCGAT-GCATTAATG---TTGC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGATC----CCGAT----T-T-A-GTCG-GC----G-----AT-CTCGTT--TTGACGC-AC-A-GCC-TTTGTCCACCTTTGAGAT--------A-CGATTAGAATCATTAGA-T-ATCGATA--AC-GA---CAAAA-----------TA-CTT-T-----------Ccgatgtttatc
gi|22 : AGGAAAGGTTT-CG-CG-CCTTCTAAAC-A
gi|10 : AAGTTTTACT---GCG--CTC-GGCG-GTGA-TTTCT-CA-AT-CCGC-TTCA-GGTGGATAAG-A------------TGCAACT-GTA-GTGGCGCCAAAAA-G--T--G-T-A-GGT-CAA-----T-GC---GATG---TTGC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAATC----CTGAT----T-T-A-GTCG-GC----G-----AT-CTCGTT--TTGACGC-AC-A-GCC-TTTGTCCAACTTCGAGAT--------A-CG---------ATGAAA-TCATCGATA--AT-GA---CAAAA-----------TA-CAT-T-----------CTT-----GGT-TT----TA-TTTgt
gi|17 : GTTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT----------AG-G-CGTCATAAAA-TACAACT-GTA-CTGACGCCAAAAA-G--T--G-A-A-CGA-CAAGGTGAT-AT---AAt
gi|1 : TTTTACTCGAGTGGCCTCAGGCG-GTGA-TT-CT-CA-AT-CCGC-TTC-----AGA-AAG-G--TGGACAAGA-TG-AACTTGTAAGTGG-CGCAAAAA-GGTT--GAT-ATGGA-CAAAG-GGT-G-----ATG---TGGC-C---C------GAAA----CG----------------------A--A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-----AT--TCGTTATTTGACGC-AC-AAGCC-TTTGTCCAACTTTG----------------------------AGA-T-AACGATACGACAAATGCCAAAATC---------TA-TGA-G-----------CTT-----ATC-TTTTGGTA-TTTGTATataccttaaagc
gi|9 : aatataactggtatcaaattaaaaacaagatgatcgtttgtcctatgttctcaatgtaaacataatagccataaaatctcgaattagatatttaatttgttaggcagatcaggaacatgattacaattatttaatcactgtctaccgtctccctaaaatcacaagcgcgttgaatcaagaaagttgagatgtcattacaattcgactaggaaaggtttcgccgtccttctataagccagatgtgggcacggaacgccttgaggtacaacaatagaaatatagttT---GCG--CTC-GGCG-GTGA-TTTCT-CA-AT-CCAC-TTCA-GGTGGATAAG-A-CTTCACAAGA-TGCAACT-GTA-GTGGCGCCAAAAA-G--T--G-T-A-GGA-CAAGGCGAT-G-----------TTGC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGATC----CCGAT----T-T-A-GTCG-GC----G-----AT-CTCGTT--TTGACGC-AC-G-GCC-TTTGTCCAACTTCGAGAT--------A-TG---------ATTAAA-TCATCGATA--AC-AA---CAAAA-----------TA-CTA-T-----------CTT-----GGT-TT----TA-TTTTTATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAAtagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|21 : ATAAG-A-CTTCACAAGA-TGCAACT-ATA-GTGGCACCAAAAA----T--G-T-A-GGA-CAtgcctaaaaaatatcacttgtc
gi|7 : AGA-TGCAACTTGTA-GTGC-GCCAAAAA-G--T--G-T-ATGGA-CAAGG-GAT-G------------TGC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGATC----CCGAT----T-T-A-GTCA-GC----G-----AT--TCGTT--TTGACGC-ACAA-GCC-TTTGTCCAAC-TTGAGAT--------A-CG---------AT-----------ACG--ACA------AGAA-----------TACTTT-T-----------CTT-----GGT-TT----AT-TTTATATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAA
gi|19 : CCAAAAA-G--T--G-T-A-GGA-CAAGGTG---------ATG---TTGG-C---C------CAAA----CG-----------tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|18 : cggcttctaaacaA-G--T--G-T-A-TGA-CAAGGTGAT-G-----------TTGT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGATC----CCAAA----T-T-A-GTCA-GC----G-----AT-aaaaagccatatttc
gi|16 : -GTCG-GC----G-----AT-CTCGTT--TTGACGC-AC-A-GCC-TTTGTCCAACTTTGATAT--------A-CG---------ATTAAA-TCGTCGATA--AC-GA---CTAAA-----------TA-CTT-T-----------CTTGGTAAGGT-TT----TA-TTTTTATATATA-CTT-CT--TGAA-ACATCTTTTCTACATA
gi|14 : A-----------TA-TATAC-----------CTT-----GGT-TA----TA-TTTTTATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|20 : attaaattatcgataacgacaaaatacttttggggttatatttttatT-T-----------CTT-----GGT-TT----TA-TTTTTAAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 111 11 444444444444444444444444444444444444444444444444444444 11111111 5555555555555555555555555 11111111 111 33333333333333333333 1111 00000000000000000000000000000000000000 111 33333 2222222222 444444444444444 11 11111111 1111 111111111 11111111 111111111111111111 4444444444444444444444444
lowQualScore : 5 2 333 5 3 4 4 4 4 4 3 22 7777 3 666 3 55 88 3 888888888888888888888888888888888888888888888888888888 55 4 55 4 44444444 4 4 4 99 4 4 4 4444444444444444444444444 4 99999999 1 66 4 999999999 222 4 4 4 22222222222222222222 4 77 2222 22222222222222222222222222222222222222 888 66 111 55 4 777 5 4 4 4 4 99999 0 7 1 0 3 3 3 3 2 77 2 5 2 8 3 8888888888 3 3 555 999999 7777 222222222222222 3 2 4 3 3 666 00 33333333 3 3 3 3 7777 0 7777 3 3 3 6 0000 3 3 55 3 7 3 3 3 444444444 3 33333333 44 3 3 3 666666666666666666 3 555 5555555555555555555555555 3 88888 3 2 3 4 4 55 8
lowQualScore : . . ... . . . . . . . . .. .... . ... . .. .. . ...................................................... .. . .. . ........ . . . .. . . . ......................... . ........ . .. . ......... ... . . . .................... . .. .... ...................................... ... .. ... .. . ... . . . . . ..... . . . . . . . . . .. . . . . . .......... . . ... ...... .... ............... . . . . . ... .. ........ . . . . .... . .... . . . . .... . . .. . . . . . ......... . ........ .. . . . .................. . ... ......................... . ..... . . . . . .. .
lowQualScore : 7 5 888 0 2 4 4 4 4 0 6 33 7777 6 444 6 00 66 6 888888888888888888888888888888888888888888888888888888 55 0 55 0 55555555 0 0 0 55 0 0 0 5555555555555555555555555 4 00000000 9 11 4 999999999 555 0 0 0 55555555555555555555 0 99 1111 33333333333333333333333333333333333333 888 11 000 55 0 111 6 0 0 0 0 55555 8 3 4 5 3 3 3 3 9 99 9 7 9 5 1 4444444444 3 3 888 666666 1111 777777777777777 6 8 5 6 6 444 00 22222222 6 6 6 6 7777 5 7777 6 6 3 7 4444 3 3 00 6 3 6 3 6 555555555 3 99999999 66 3 3 3 444444444444444444 3 444 4444444444444444444444444 1 33333 3 3 6 0 0 55 0
consensus : ATTG-TNTTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A--AAA-----------------AA-------CCTTTTA--CAG-TCA--AA-C--------AA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACG-------AC---------------A---------A---AAA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTCN----GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GAT-AAC-GACAA-AA-----------T------AC-TT---T-------------------------C-TT-----GGTTTTAT-TTTT-ATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( family-1209 ) : ATTG-TGTTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A--AAA-----------------AN-------CCTTTTA--CAG-TCA--AA-C--------AA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACA-------AC---------------G---------A---AAA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC-----GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GAT-AAC-GACAA-AA-----------T------AC-TT---T-------------------------C-TT-----GGTTTTAT-TTNT-ATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCC----------AT---A--AAATCTCGAATTAGATATTTAA-------TTTGTTAGGCAGATCAGGAA-CATGATTACAA-TTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-AAA----A----TCACAAGCGCGT-T--GAAT-CAAG--AAAGTTGAGATGTCATT-ACAATT----CGACTAGGAAAGGTTT-CGCCGTCCTTCTATAAGCCAGATGTGGGCACGGAAC-GCCTTGAGGTACA-------AC---------------A---------ATAGAAATATAGTTTTTTACTCGAGTGGCCTCAGGC-G-GTGA-TTCT-CA-AT-CCGC-TTCAGAAAGGTGG-----------ACAAGA-TG-AACTT-GTAAGTGGCGCAAAAAG-GTTGAT-ATGGA-CAAAG-GGT-G-----AT---GTG-GC-C---C------GAAA----CG--------------------A----A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-AT--TCGTTATTTGACGC-ACAAGCC-TTTGTCCAACTTTGAGATAA---------CGA-TA--------------C--GACAAAT-GCCAA-AA-----------TCTATGAGC-TTATCT-------------------------T-TT-----GG---TAT-TTGT-AT
gi|10 : A---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTCA----GGTGGATAAG-A-----------TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGT-CAATGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAAT----CCTGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATGA-AATC-------ATC--GAT-AAT-GACAA-AA-----------T------AC-AT---T-------------------------C-TT-----GGTTTTAT-TTtagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : G-TTTTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTT--TCA--GTAAA-CAAAA---------------A----A--AAA-----------------t
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTT--TCA--ATAAA-AAAAA---------------AA---A--AAA-----------------AA-------CCTGTTA--CAG-TCA--AA-C--------AA-TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTTAA----A----T-C-GAT---GT-T--caaaaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|12 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaaATTG-TTTTGA---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A--AAA-----------------AAAAAAAAACCTTTTA--GAG-TCA--AA-C--------AA-TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-TAA--------------------------AAT-C-------------GATGTC--T-A----T----CG---AGGAAAGGTTT-TG-TG-CCTTCTA--------------------AAC-Atatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------ATTAAA--AAA-----------------AA-------ACTTTTA--CAG-TCA--AA-C--------AA-CTATTTAA-TCACT---------G-T-CTCCCC-TAAAATCA----C-A-AGG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----TCGTCCG---AGGAAAGGTTT-CG-CG-GCTTCTA--------------------AAC-A
gi|14 : ATTA-AATT-------ATC--GAT-AAC-GACAA-AA-----------T------AC-TT---TTGGGGTTATATTTTTATATATATACC-TT-----GGTTATAT-TTTT-ATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|15 : ATTGCTGTTGAATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T----TCAA-GTAAAACAAAA---------------GT---T--AAA-----------------AA-------C--TTTA--CAG-TCA--AA-C--------AA-T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----tgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
gi|16 : g-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTTGATAT-A---------CGATTA-AATC-------GTC--GAT-AAC-GACTA-AA-----------T------AC-TT---T-------------------------C-TTGGTAAGGTTTTAT-TTTT-ATATATA-CTT-CT--TGAA-ACATCTTTTCTACATAatcac
gi|17 : G--TTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT-------------AG-GCGTCATAAAA-TACAAC-T-GT-ACTGACGCCAAAAA-GT--GA-A-CGA-CAAGGTGAT-
gi|18 : A-GT--GT-A-TGA-CAAGG---T-G-----AT---GTT-GT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGAT----CCCAAA----T-T-A-GTC-AGC----G-AT-ataaataccttaaagc
gi|19 : CACCAAAAA-GT--GT-A-GGA-CAAGG---T-G-----AT---GTT-GG-C---C------CAAA----CG-----------
gi|2 : cggcttctaaaATTG-TTTTGAA--T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGT--TCA--GTAAA-CAAAAAAAAACAAAAAAAAAAA---A--AAA-----------------AA-------CCTGTTA--CAG-TCA--AA-C--------AA-TTATTTAA-TCACTGT-CT--CTG-T--TCCCC-T------------------------T--AAAT-C-------------GATGTT--TTA----T----CGTT-GGAAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-CC--TG----ACA-------AC---------------ATAAGCACGAA---AAA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC-----GGTGGATAAG-A---------------AC-T-GT-A-TGGCGCCAAAA--GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GAT----CC-GAT----T-T-A-GT--GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATT-------ATC--GAT-AAC-GACAA-AACTTTTGGGGTTT------AT-TT---TTATATATATAC--------------C-TT-----GGTTATAT-TTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAaaaaagccatatttc
gi|20 : T---T-------------------------C-TT-----GGTTTTAT-TTTT-AAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|21 : ATAAG-ACTTCACAAGA-TGCAAC-T-AT-AGTGGCACCAAAAA--T--GT-A-GGA-CAt
gi|22 : ---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-A
gi|3 : GTTGA---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GT--TCA--GTAA--CAAAA---------------AT---ACAAAA-----------------AT-------TCTTTTA--CAG-TCA--AA-C--------AAATTATTTAAGTCACTGTTCT--CCG-T-C-CCCC-TAA----AATCAT-A-AAG---GTGTCGGAAT-CAAGTCAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-C--CCTTCCT--------------------AAC-AC---G----ACA-------A--------------------------A---CAA---AG--TTTTACT---GTG--CT--GGT-G--TGATTTCTGCA-ATTCCGC-TTCT----GGTGGACAAGGACTTCACA-GA--GCAAC-T-GT--GTGGCACCAAAAAAGTTCGT-A-GGA-CAAGGCGATCGC----ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGAT----CC--AT----T-T-AAGTC-GGC----G-ATTCTCGT--TTTGACGC-AC-AGCCCTTTGTC--ACTTTGAGAT-AGATTAGAATCAATTA-GATG-------ATC--GAT-AAC-GACAA-AA-----------T------AC-CT---T-------------------------CTTT-----GGTTTTA--TTAC-AGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAgt
gi|4 : tgATTG-TGTTGA---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGT--TCA--G-AAA-CAAAATAA------------AA---A--AAA-----------------AA-------C--TTTA--CAG-TCA--AA-C--------AA-TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-TAA----AAAT-C-A-AAA---GG-T--GAATTCAAG-CAA-GTTGAGATGTC--T-A----T----C----AGGAAAGGTTTTCA-CG-CCTTCTA--------------------AACCAC--TG----ACG-------ACCGTGAGCATGCACTGA---------A---AAA---AG--TTTTACCA--GCG--CTC-GGCCA-GTGATTTCT-CA-TT-CCGCCTTCTA---GGTGGACAAG-ACTTCA-AAGACTGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GTTA-GGAACAAGGCGAT-G-----------TT-GC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-AT----CCCGAT----T-TTA-ATCCGGTT---GCAT-CTTGT--TTTGACGCCAC-AACA-TTTGTCCAGCTTTGAGAT-A---------CGATTA-AATC-------ATCCAGA--AAC-AACAA-AA-----------T------AC-TT---T-------------------------C-TT-----GGGTGTGTATTTT-ATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|5 : ATTG-TGTTTA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A--AAA-----------------AT-------TCTTTTA--CAG-TCA--AA-C--------TA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AGG---GT-T--GAAT-CAAG-TAAAGTCGAGATGTC--T-G----T----CA---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACG-------AC-----------------------------AAA---AG--TTTTACT---GCG--CTC-GGC-GTGTGA-TTCT-CA-AT-CCGC-TTCT----GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-GCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCA---AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT-CTCGT--TTTGATGC-AC-AGCC-TTTGTCCAACTTTGAGA--A---------CGATTA-GAT--------ATC--GAT-AACAAACAA-AA-----------T------AT-GT---T-------------------------C-TT-----GGTTTTAT-TTAT-ATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAtgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|6 : ATTG-TTTTCA---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGT--TCA--GTAAA-AGAAA---------------ATG--A--AAA-----------------AA-------AAATTTA--CA--TCA--AAAC--------AA-TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-TAA----A----------------------AT-C-------------GATGTC--T-A----T----CG---AGGAAAGATTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACACATGAGCACTGAA-----------A---------A---AAA---AG---TTTACT---GCG--CTC-GGC-G-GTA--TTCT-CAGAT-CCGC-TTCA----GGTAGATAAGAACTTCACAAGA-TGCAAC-T-GT-AGTG--GCCAAAAA-GT--GT-A-AGA-CAAG------G-----AT---GTT-GCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA----------AGAA--CA--------A-TTTCTAATGAAC-TT-CGAT----CCCGA-----T-T-A-GTC-GCC----G-AT-CTTG---TTTGACGC-AC-AGTC-TTTGTCCAACTTCGAGAT-A---------CGA-TA-AATC-------ATC--GAT-AAC-GACAA-TA-----------T------AC-TT---T-------------------------C--T-----GGTTTTAT-T--T-ATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|7 : AGA-TGCAAC-TTGT-AGTG-CGCCAAAAA-GT--GT-ATGGA-CAAGG-----G-----AT---GT--GC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT--TCGT--TTTGACGC-ACAAGCC-TTTGTCCAACTT-GAGAT-A---------CGAT------------------------AC-GACAAGAA-----------T------ACTTT---T-------------------------C-TT-----GGTTTATT-TTAT-ATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAAt
gi|8 : G---GT-C--GAAT-CAAG-TAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-CA-CCTTCTT--------------------AAC-AC--TG----ACA-------AC-----------------------------AAA---AG--TTTTACT---GTG--CTT-GGC-T-GTGATTTCT-CA-AT-CCGC-TTCT----GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-ACCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCATTAAT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCACCTTTGAGAT-A---------CGATTAGAATCATTAGATATC--GAT-AAC-GACAA-AA-----------T------AC-TT---T-------------------------C-tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|9 : T---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCAC-TTCA----GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-GGCC-TTTGTCCAACTTCGAGAT-A---------TGATTA-AATC-------ATC--GAT-AAC-AACAA-AA-----------T------AC-TA---T-------------------------C-TT-----GGTTTTAT-TTTT-ATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAA
Alignments
lowQualScore : 111 11 555555555555555555555555555555555555555555 11111111 5555555555555555555555555 11111111 111 33333333333333333333 6666666666666666666666666666666666666666666666666 111 111111 2222222222 444444444444444 11 11111111 1111 111111111 11111111 11111111111 4444444444444444444444444
lowQualScore : 5 1 333 5 3 4 4 4 4 4 3 22 7777 3 666 3 55 88 3 000000000000000000000000000000000000000000 88 55 4 55 88888888 4 4 4 99 4 4 4 4444444444444444444444444 4 99999999 1 66 4 999999999 222 4 4 4 22222222222222222222 4 77 9999999999999999999999999999999999999999999999999 5 888 66 111 55 4 777 5 4 4 4 4 777777 1 7 3 0 3 3 3 3 2 77 2 5 2 8 3 8888888888 3 3 555 999999 7777 222222222222222 3 2 4 3 3 666 00 33333333 3 3 3 3 7777 0 7777 3 3 3 6 0000 3 3 55 3 7 3 3 3 444444444 3 33333333 55 3 3 77777777777 3 9999999999999999999999999 3 99999 3 7 4 4 55 8
lowQualScore : . . ... . . . . . . . . .. .... . ... . .. .. . .......................................... .. .. . .. ........ . . . .. . . . ......................... . ........ . .. . ......... ... . . . .................... . .. ................................................. . ... .. ... .. . ... . . . . . ...... . . . . . . . . . .. . . . . . .......... . . ... ...... .... ............... . . . . . ... .. ........ . . . . .... . .... . . . . .... . . .. . . . . . ......... . ........ .. . . ........... . ......................... . ..... . . . . .. .
lowQualScore : 7 0 888 0 2 4 4 4 4 0 6 33 7777 6 444 6 00 66 6 555555555555555555555555555555555555555555 11 55 0 55 55555555 0 0 0 55 0 0 0 5555555555555555555555555 4 00000000 9 11 4 999999999 555 0 0 0 55555555555555555555 0 99 7777777777777777777777777777777777777777777777777 7 888 11 000 55 0 111 6 0 0 0 0 444444 8 3 6 5 3 3 3 3 9 99 9 7 9 5 1 4444444444 3 3 888 666666 1111 777777777777777 6 8 5 6 6 444 00 22222222 6 6 6 6 7777 5 7777 6 6 3 7 4444 3 3 00 6 3 6 3 6 555555555 6 88888888 00 6 6 33333333333 6 2222222222222222222222222 3 11111 6 3 0 0 55 0
consensus : ATTG-TTTTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( family-1209 ) : ATTG-TNTTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCC----------AT---A-AAATCTCGAATTAGATATTTAAT-TTGTTAGGCAGATCAGGAACATGATTACAA-TTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-AAA----A----TCACAAGCGCGT-T--GAAT-CAAG--AAAGTTGAGATGTCATT-ACAATT----CGACTAGGAAAGGTTT-CGCCGTCCTTCTATAAGCCAGATGTGGGCACGGAAC-GCCTTGAGGTAC-----------AAC---------------A---------ATAGA-AATATAGTTTTTTACTCGAGTGGCCTCAGGC-G-GTGA-TTCT-CA-AT-CCGC-TTCAGAAA-GGTGG-----------ACAAGA-TG-AACTT-GTAAGTGGCGCAAAAAG-GTTGAT-ATGGA-CAAAG-GGT-G-----AT---GTG-GC-C---C------GAAA----CG--------------------A----A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-AT--TCGTTATTTGACGC-ACAAGCC-TTTGTCCAACTTTGAGATAA---------CGAT
gi|10 : A---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----A-GGTGGATAAG-A-----------TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGT-CAATGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAAT----CCTGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATGA-AATC-------ATC--GATAAT-GACAA-AA-----------TAC-ATT-------------------------C-TT-----GGTTTTAT-TTT-acgacaaatgccaaaatctatgagcttatcttttggtatttgtattagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : G-TTTTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTT--TCA--GTAAA-CAAAA---------------AA---A-AAC-----------------AA
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTT--TCA--ATAAA-AAAAA---------------AA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTTAA----A----T-C-GAT---GT-T--aaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|12 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaaATTG-TTTTGA---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAAAAAAAAA----------AAC-CTTTTA--GAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-TAA--------------------------AAT-C-------------GATGTC--T-A----T----CG---AGGAAAGGTTT-TG-TG-CCTTCTA--------------------AAC-Atatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------ATTAAA-AAA-----------------AAA-CTTTTA--CAG-TCA--AA--------CAA-CTATTTAA-TCACT---------G-T-CTCCCC-TAAAATCA----C-A-AGG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----TCGTCCG---AGGAAAGGTTT-CG-CG-GCTTCTA--------------------AAC-A
gi|14 : ATTA-AATT-------ATC--GATAAC-GACAA-AA-----------TAC-TTTTGGGGTTATATTTTTATATATATACC-TT-----GGTTATAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|15 : ATTGCTGTTGAATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T----TCAA-GTAAAACAAAA---------------GT---T-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----tgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
gi|16 : g-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTTGATAT-A---------CGATTA-AATC-------GTC--GATAAC-GACTA-AA-----------TAC-TTT-------------------------C-TTGGTAAGGTTTTAT-TTT-TATATATA-CTT-CT--TGAA-ACATCTTTTCTACATAatcac
gi|17 : G--TTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT----A-GGCG----------TCATAAAA-TACAAC-T-GT-ACTGACGCCAAAAA-GT--GA-A-CGA-CAAGGTGAT-
gi|18 : A-GT--GT-A-TGA-CAAGG---T-G-----AT---GTT-GT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGAT----CCCAAA----T-T-A-GTC-AGC----G-AT-ataaataccttaaagc
gi|19 : CACCAAAAA-GT--GT-A-GGA-CAAGG---T-G-----AT---GTT-GG-C---C------CAAA----CG-----------
gi|2 : cggcttctaaaATTG-TTTTGAA--T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGT--TCA--GTAAA-CAAAAAAAAACAAAAAAAAAAA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T--TCCCC-T------------------------T--AAAT-C-------------GATGTT--TTA----T----CGTT-GGAAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-CC--TG----AC-----------AAC---------------ATAAGCACGAA---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC------GGTGGATAAG-A---------------AC-T-GT-A-TGGCGCCAAAA--GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GAT----CC-GAT----T-T-A-GT--GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATT-------ATC--GATAAC-GACAA-AACTTTTGGGGTTTAT-TTTTATATATATAC--------------C-TT-----GGTTATAT-TTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAaaaaagccatatttc
gi|20 : TT-------------------------C-TT-----GGTTTTAT-TTT-TAAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|21 : ATAAG-ACTTCACAAGA-TGCAAC-T-AT-AGTGGCACCAAAAA--T--GT-A-GGA-CAt
gi|22 : ---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-A
gi|3 : TTGA---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GT--TCA--GTAA--CAAAA---------------AT---ACAAA-----------------AATTCTTTTA--CAG-TCA--AA--------CAAATTATTTAAGTCACTGTTCT--CCG-T-C-CCCC-TAA----AATCAT-A-AAG---GTGTCGGAAT-CAAGTCAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-C--CCTTCCT--------------------AAC-AC---------------------GAC---------------A---------A---ACAA---AG--TTTTACT---GTG--CT--GGT-G--TGATTTCTGCA-ATTCCGC-TTC----T-GGTGGACAAGGACTTCACA-GA--GCAAC-T-GT--GTGGCACCAAAAAAGTTCGT-A-GGA-CAAGGCGATCGC----ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGAT----CC--AT----T-T-AAGTC-GGC----G-ATTCTCGT--TTTGACGC-AC-AGCCCTTTGTC--ACTTTGAGAT-AGATTAGAATCAATTA-GATG-------ATC--GATAAC-GACAA-AA-----------TAC-CTT-------------------------CTTT-----GGTTTTA--TTA-CAGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAgt
gi|4 : tggATTG-TGTTGA---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGT--TCA--G-AAA-CAAAATAA------------AA---A-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-TAA----AAAT-C-A-AAA---GG-T--GAATTCAAG-CAA-GTTGAGATGTC--T-A----T----C----AGGAAAGGTTTTCA-CG-CCTTCTA--------------------AACCAC--TG----AC-----------GACCGTGAGCATGCACTGA---------A---A-AA---AG--TTTTACCA--GCG--CTC-GGCCA-GTGATTTCT-CA-TT-CCGCCTTC----TAGGTGGACAAG-ACTTCA-AAGACTGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GTTA-GGAACAAGGCGAT-G-----------TT-GC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-AT----CCCGAT----T-TTA-ATCCGGTT---GCAT-CTTGT--TTTGACGCCAC-AACA-TTTGTCCAGCTTTGAGAT-A---------CGATTA-AATC-------ATCCAGA-AAC-AACAA-AA-----------TAC-TTT-------------------------C-TT-----GGGTGTGTATTT-TATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|5 : ATTG-TGTTTA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------ATT-CTTTTA--CAG-TCA--AA--------CTA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AGG---GT-T--GAAT-CAAG-TAAAGTCGAGATGTC--T-G----T----CA---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC-----------------------------A-AA---AG--TTTTACT---GCG--CTC-GGC-GTGTGA-TTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-GCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCA---AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT-CTCGT--TTTGATGC-AC-AGCC-TTTGTCCAACTTTGAGA--A---------CGATTA-GAT--------ATC--GATAACAAACAA-AA-----------TAT-GTT-------------------------C-TT-----GGTTTTAT-TTA-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAtgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|6 : ATTG-TTTTCA---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGT--TCA--GTAAA-AGAAA---------------ATG--A-AAA-----------------AAA-AATTTA--CA--TCA--AAA-------CAA-TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-TAA----A----------------------AT-C-------------GATGTC--T-A----T----CG---AGGAAAGATTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACACATGAGCACTGAA---------------A---------A---A-AA---AG---TTTACT---GCG--CTC-GGC-G-GTA--TTCT-CAGAT-CCGC-TTC----A-GGTAGATAAGAACTTCACAAGA-TGCAAC-T-GT-AGTG--GCCAAAAA-GT--GT-A-AGA-CAAG------G-----AT---GTT-GCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA----------AGAA--CA--------A-TTTCTAATGAAC-TT-CGAT----CCCGA-----T-T-A-GTC-GCC----G-AT-CTTG---TTTGACGC-AC-AGTC-TTTGTCCAACTTCGAGAT-A---------CGA-TA-AATC-------ATC--GATAAC-GACAA-TA-----------TAC-TTT-------------------------C--T-----GGTTTTA---TT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|7 : AGA-TGCAAC-TTGT-AGTG-CGCCAAAAA-GT--GT-ATGGA-CAAGG-----G-----AT---GT--GC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT--TCGT--TTTGACGC-ACAAGCC-TTTGTCCAACTT-GAGAT-A---------CGAT-----------------------AC-GACAAGAA-----------TACTTTT-------------------------C-TT-----GG-TTTAT-TTTATATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAAt
gi|8 : G---GT-C--GAAT-CAAG-TAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-CA-CCTTCTT--------------------AAC-AC--TG----AC-----------AAC---------------A---------A---A-A-----G--TTTTACT---GTG--CTT-GGC-T-GTGATTTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-ACCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCATTAAT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCACCTTTGAGAT-A---------CGATTAGAATCATTAGATATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|9 : T---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCAC-TTC----A-GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-GGCC-TTTGTCCAACTTCGAGAT-A---------TGATTA-AATC-------ATC--GATAAC-AACAA-AA-----------TAC-TAT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAA
Alignments
lowQualScore : 111 11 555555555555555555555555555555555555555555 11111111 5555555555555555555555555 11111111 111 33333333333333333333 6666666666666666666666666666666666666666666666666 111 111111 2222222222 444444444444444 11 11111111 1111 111111111 11111111 11111111111 4444444444444444444444444
lowQualScore : 5 333 5 3 4 4 4 4 4 3 22 7777 3 666 3 55 88 3 000000000000000000000000000000000000000000 88 55 4 55 88888888 4 4 4 99 4 4 4 4444444444444444444444444 4 99999999 1 66 4 999999999 222 4 4 4 22222222222222222222 4 77 9999999999999999999999999999999999999999999999999 5 888 66 111 55 4 777 5 4 4 4 4 777777 1 7 3 0 3 3 3 3 2 77 2 5 2 8 3 8888888888 3 3 555 999999 7777 222222222222222 3 2 4 3 3 666 00 33333333 3 3 3 3 7777 0 7777 3 3 3 6 0000 3 3 55 3 7 3 3 3 444444444 3 33333333 55 3 3 77777777777 3 9999999999999999999999999 3 99999 3 7 4 4 55 8
lowQualScore : . ... . . . . . . . . .. .... . ... . .. .. . .......................................... .. .. . .. ........ . . . .. . . . ......................... . ........ . .. . ......... ... . . . .................... . .. ................................................. . ... .. ... .. . ... . . . . . ...... . . . . . . . . . .. . . . . . .......... . . ... ...... .... ............... . . . . . ... .. ........ . . . . .... . .... . . . . .... . . .. . . . . . ......... . ........ .. . . ........... . ......................... . ..... . . . . .. .
lowQualScore : 0 888 0 2 4 4 4 4 0 6 33 7777 6 444 6 00 66 6 555555555555555555555555555555555555555555 11 55 0 55 55555555 0 0 0 55 0 0 0 5555555555555555555555555 4 00000000 9 11 4 999999999 555 0 0 0 55555555555555555555 0 99 7777777777777777777777777777777777777777777777777 7 888 11 000 55 0 111 6 0 0 0 0 444444 8 3 6 5 3 3 3 3 9 99 9 7 9 5 1 4444444444 3 3 888 666666 1111 777777777777777 6 8 5 6 6 444 00 22222222 6 6 6 6 7777 5 7777 6 6 3 7 4444 3 3 00 6 3 6 3 6 555555555 6 88888888 00 6 6 33333333333 6 2222222222222222222222222 3 11111 6 3 0 0 55 0
consensus : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( family-1209 ) : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCC----------AT---A-AAATCTCGAATTAGATATTTAAT-TTGTTAGGCAGATCAGGAACATGATTACAA-TTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-AAA----A----TCACAAGCGCGT-T--GAAT-CAAG--AAAGTTGAGATGTCATT-ACAATT----CGACTAGGAAAGGTTT-CGCCGTCCTTCTATAAGCCAGATGTGGGCACGGAAC-GCCTTGAGGTAC-----------AAC---------------A---------ATAGA-AATATAGTTTTTTACTCGAGTGGCCTCAGGC-G-GTGA-TTCT-CA-AT-CCGC-TTCAGAAA-GGTGG-----------ACAAGA-TG-AACTT-GTAAGTGGCGCAAAAAG-GTTGAT-ATGGA-CAAAG-GGT-G-----AT---GTG-GC-C---C------GAAA----CG--------------------A----A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-AT--TCGTTATTTGACGC-ACAAGCC-TTTGTCCAACTTTGAGATAA---------CGAT
gi|10 : A---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----A-GGTGGATAAG-A-----------TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGT-CAATGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAAT----CCTGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATGA-AATC-------ATC--GATAAT-GACAA-AA-----------TAC-ATT-------------------------C-TT-----GGTTTTAT-TTT-acgacaaatgccaaaatctatgagcttatcttttggtatttgtattagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : GTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTT--TCA--GTAAA-CAAAA---------------AA---A-AAC-----------------AA
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTT--TCA--ATAAA-AAAAA---------------AA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTTAA----A----T-C-GAT---GT-T--aaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|12 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaaATTGTT-TTGA---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAAAAAAAAA----------AAC-CTTTTA--GAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-TAA--------------------------AAT-C-------------GATGTC--T-A----T----CG---AGGAAAGGTTT-TG-TG-CCTTCTA--------------------AAC-Atatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------ATTAAA-AAA-----------------AAA-CTTTTA--CAG-TCA--AA--------CAA-CTATTTAA-TCACT---------G-T-CTCCCC-TAAAATCA----C-A-AGG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----TCGTCCG---AGGAAAGGTTT-CG-CG-GCTTCTA--------------------AAC-A
gi|14 : ATTA-AATT-------ATC--GATAAC-GACAA-AA-----------TAC-TTTTGGGGTTATATTTTTATATATATACC-TT-----GGTTATAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|15 : ATTGCTGTTGAATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T----TCAA-GTAAAACAAAA---------------GT---T-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----tgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
gi|16 : g-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTTGATAT-A---------CGATTA-AATC-------GTC--GATAAC-GACTA-AA-----------TAC-TTT-------------------------C-TTGGTAAGGTTTTAT-TTT-TATATATA-CTT-CT--TGAA-ACATCTTTTCTACATAatcac
gi|17 : G--TTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT----A-GGCG----------TCATAAAA-TACAAC-T-GT-ACTGACGCCAAAAA-GT--GA-A-CGA-CAAGGTGAT-
gi|18 : A-GT--GT-A-TGA-CAAGG---T-G-----AT---GTT-GT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGAT----CCCAAA----T-T-A-GTC-AGC----G-AT-ataaataccttaaagc
gi|19 : CACCAAAAA-GT--GT-A-GGA-CAAGG---T-G-----AT---GTT-GG-C---C------CAAA----CG-----------
gi|2 : cggcttctaaaATTGTT-TTGAA--T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGT--TCA--GTAAA-CAAAAAAAAACAAAAAAAAAAA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T--TCCCC-T------------------------T--AAAT-C-------------GATGTT--TTA----T----CGTT-GGAAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-CC--TG----AC-----------AAC---------------ATAAGCACGAA---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC------GGTGGATAAG-A---------------AC-T-GT-A-TGGCGCCAAAA--GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GAT----CC-GAT----T-T-A-GT--GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATT-------ATC--GATAAC-GACAA-AACTTTTGGGGTTTAT-TTTTATATATATAC--------------C-TT-----GGTTATAT-TTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAaaaaagccatatttc
gi|20 : TT-------------------------C-TT-----GGTTTTAT-TTT-TAAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|21 : ATAAG-ACTTCACAAGA-TGCAAC-T-AT-AGTGGCACCAAAAA--T--GT-A-GGA-CAt
gi|22 : ---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-A
gi|3 : -TTGA---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GT--TCA--GTAA--CAAAA---------------AT---ACAAA-----------------AATTCTTTTA--CAG-TCA--AA--------CAAATTATTTAAGTCACTGTTCT--CCG-T-C-CCCC-TAA----AATCAT-A-AAG---GTGTCGGAAT-CAAGTCAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-C--CCTTCCT--------------------AAC-AC---------------------GAC---------------A---------A---ACAA---AG--TTTTACT---GTG--CT--GGT-G--TGATTTCTGCA-ATTCCGC-TTC----T-GGTGGACAAGGACTTCACA-GA--GCAAC-T-GT--GTGGCACCAAAAAAGTTCGT-A-GGA-CAAGGCGATCGC----ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGAT----CC--AT----T-T-AAGTC-GGC----G-ATTCTCGT--TTTGACGC-AC-AGCCCTTTGTC--ACTTTGAGAT-AGATTAGAATCAATTA-GATG-------ATC--GATAAC-GACAA-AA-----------TAC-CTT-------------------------CTTT-----GGTTTTA--TTA-CAGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAgt
gi|4 : tggATTGTG-TTGA---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGT--TCA--G-AAA-CAAAATAA------------AA---A-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-TAA----AAAT-C-A-AAA---GG-T--GAATTCAAG-CAA-GTTGAGATGTC--T-A----T----C----AGGAAAGGTTTTCA-CG-CCTTCTA--------------------AACCAC--TG----AC-----------GACCGTGAGCATGCACTGA---------A---A-AA---AG--TTTTACCA--GCG--CTC-GGCCA-GTGATTTCT-CA-TT-CCGCCTTC----TAGGTGGACAAG-ACTTCA-AAGACTGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GTTA-GGAACAAGGCGAT-G-----------TT-GC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-AT----CCCGAT----T-TTA-ATCCGGTT---GCAT-CTTGT--TTTGACGCCAC-AACA-TTTGTCCAGCTTTGAGAT-A---------CGATTA-AATC-------ATCCAGA-AAC-AACAA-AA-----------TAC-TTT-------------------------C-TT-----GGGTGTGTATTT-TATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|5 : ATTGTG-TTTA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------ATT-CTTTTA--CAG-TCA--AA--------CTA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AGG---GT-T--GAAT-CAAG-TAAAGTCGAGATGTC--T-G----T----CA---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC-----------------------------A-AA---AG--TTTTACT---GCG--CTC-GGC-GTGTGA-TTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-GCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCA---AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT-CTCGT--TTTGATGC-AC-AGCC-TTTGTCCAACTTTGAGA--A---------CGATTA-GAT--------ATC--GATAACAAACAA-AA-----------TAT-GTT-------------------------C-TT-----GGTTTTAT-TTA-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAtgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|6 : ATTGTT-TTCA---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGT--TCA--GTAAA-AGAAA---------------ATG--A-AAA-----------------AAA-AATTTA--CA--TCA--AAA-------CAA-TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-TAA----A----------------------AT-C-------------GATGTC--T-A----T----CG---AGGAAAGATTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACACATGAGCACTGAA---------------A---------A---A-AA---AG---TTTACT---GCG--CTC-GGC-G-GTA--TTCT-CAGAT-CCGC-TTC----A-GGTAGATAAGAACTTCACAAGA-TGCAAC-T-GT-AGTG--GCCAAAAA-GT--GT-A-AGA-CAAG------G-----AT---GTT-GCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA----------AGAA--CA--------A-TTTCTAATGAAC-TT-CGAT----CCCGA-----T-T-A-GTC-GCC----G-AT-CTTG---TTTGACGC-AC-AGTC-TTTGTCCAACTTCGAGAT-A---------CGA-TA-AATC-------ATC--GATAAC-GACAA-TA-----------TAC-TTT-------------------------C--T-----GGTTTTA---TT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|7 : AGA-TGCAAC-TTGT-AGTG-CGCCAAAAA-GT--GT-ATGGA-CAAGG-----G-----AT---GT--GC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT--TCGT--TTTGACGC-ACAAGCC-TTTGTCCAACTT-GAGAT-A---------CGAT-----------------------AC-GACAAGAA-----------TACTTTT-------------------------C-TT-----GG-TTTAT-TTTATATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAAt
gi|8 : G---GT-C--GAAT-CAAG-TAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-CA-CCTTCTT--------------------AAC-AC--TG----AC-----------AAC---------------A---------A---A-A-----G--TTTTACT---GTG--CTT-GGC-T-GTGATTTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-ACCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCATTAAT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCACCTTTGAGAT-A---------CGATTAGAATCATTAGATATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|9 : T---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCAC-TTC----A-GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-GGCC-TTTGTCCAACTTCGAGAT-A---------TGATTA-AATC-------ATC--GATAAC-AACAA-AA-----------TAC-TAT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAA
Alignments
lowQualScore : 111 11 555555555555555555555555555555555555555555 11111111 5555555555555555555555555 11111111 111 33333333333333333333 6666666666666666666666666666666666666666666666666 111 111111 2222222222 444444444444444 11 11111111 1111 111111111 11111111 11111111111 4444444444444444444444444
lowQualScore : 5 333 5 3 4 4 4 4 4 3 22 7777 3 666 3 55 88 3 000000000000000000000000000000000000000000 88 55 4 55 88888888 4 4 4 99 4 4 4 4444444444444444444444444 4 99999999 1 66 4 999999999 222 4 4 4 22222222222222222222 4 77 9999999999999999999999999999999999999999999999999 5 888 66 111 55 4 777 5 4 4 4 4 777777 1 7 3 0 3 3 3 3 2 77 2 5 2 8 3 8888888888 3 3 555 999999 7777 222222222222222 3 2 4 3 3 666 00 33333333 3 3 3 3 7777 0 7777 3 3 3 6 0000 3 3 55 3 7 3 3 3 444444444 3 33333333 55 3 3 77777777777 3 9999999999999999999999999 3 99999 3 7 4 4 55 8
lowQualScore : . ... . . . . . . . . .. .... . ... . .. .. . .......................................... .. .. . .. ........ . . . .. . . . ......................... . ........ . .. . ......... ... . . . .................... . .. ................................................. . ... .. ... .. . ... . . . . . ...... . . . . . . . . . .. . . . . . .......... . . ... ...... .... ............... . . . . . ... .. ........ . . . . .... . .... . . . . .... . . .. . . . . . ......... . ........ .. . . ........... . ......................... . ..... . . . . .. .
lowQualScore : 0 888 0 2 4 4 4 4 0 6 33 7777 6 444 6 00 66 6 555555555555555555555555555555555555555555 11 55 0 55 55555555 0 0 0 55 0 0 0 5555555555555555555555555 4 00000000 9 11 4 999999999 555 0 0 0 55555555555555555555 0 99 7777777777777777777777777777777777777777777777777 7 888 11 000 55 0 111 6 0 0 0 0 444444 8 3 6 5 3 3 3 3 9 99 9 7 9 5 1 4444444444 3 3 888 666666 1111 777777777777777 6 8 5 6 6 444 00 22222222 6 6 6 6 7777 5 7777 6 6 3 7 4444 3 3 00 6 3 6 3 6 555555555 6 88888888 00 6 6 33333333333 6 2222222222222222222222222 3 11111 6 3 0 0 55 0
consensus : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( family-1209 ) : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCC----------AT---A-AAATCTCGAATTAGATATTTAAT-TTGTTAGGCAGATCAGGAACATGATTACAA-TTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-AAA----A----TCACAAGCGCGT-T--GAAT-CAAG--AAAGTTGAGATGTCATT-ACAATT----CGACTAGGAAAGGTTT-CGCCGTCCTTCTATAAGCCAGATGTGGGCACGGAAC-GCCTTGAGGTAC-----------AAC---------------A---------ATAGA-AATATAGTTTTTTACTCGAGTGGCCTCAGGC-G-GTGA-TTCT-CA-AT-CCGC-TTCAGAAA-GGTGG-----------ACAAGA-TG-AACTT-GTAAGTGGCGCAAAAAG-GTTGAT-ATGGA-CAAAG-GGT-G-----AT---GTG-GC-C---C------GAAA----CG--------------------A----A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-AT--TCGTTATTTGACGC-ACAAGCC-TTTGTCCAACTTTGAGATAA---------CGAT
gi|10 : A---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----A-GGTGGATAAG-A-----------TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGT-CAATGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAAT----CCTGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATGA-AATC-------ATC--GATAAT-GACAA-AA-----------TAC-ATT-------------------------C-TT-----GGTTTTAT-TTT-acgacaaatgccaaaatctatgagcttatcttttggtatttgtattagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : GTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTT--TCA--GTAAA-CAAAA---------------AA---A-AAC-----------------AA
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTT--TCA--ATAAA-AAAAA---------------AA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTTAA----A----T-C-GAT---GT-T--aaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|12 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaaATTGTT-TTGA---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAAAAAAAAA----------AAC-CTTTTA--GAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-TAA--------------------------AAT-C-------------GATGTC--T-A----T----CG---AGGAAAGGTTT-TG-TG-CCTTCTA--------------------AAC-Atatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------ATTAAA-AAA-----------------AAA-CTTTTA--CAG-TCA--AA--------CAA-CTATTTAA-TCACT---------G-T-CTCCCC-TAAAATCA----C-A-AGG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----TCGTCCG---AGGAAAGGTTT-CG-CG-GCTTCTA--------------------AAC-A
gi|14 : ATTA-AATT-------ATC--GATAAC-GACAA-AA-----------TAC-TTTTGGGGTTATATTTTTATATATATACC-TT-----GGTTATAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|15 : ATTGCTGTTGAATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T----TCAA-GTAAAACAAAA---------------GT---T-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----tgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
gi|16 : g-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTTGATAT-A---------CGATTA-AATC-------GTC--GATAAC-GACTA-AA-----------TAC-TTT-------------------------C-TTGGTAAGGTTTTAT-TTT-TATATATA-CTT-CT--TGAA-ACATCTTTTCTACATAatcac
gi|17 : G--TTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT----A-GGCG----------TCATAAAA-TACAAC-T-GT-ACTGACGCCAAAAA-GT--GA-A-CGA-CAAGGTGAT-
gi|18 : A-GT--GT-A-TGA-CAAGG---T-G-----AT---GTT-GT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGAT----CCCAAA----T-T-A-GTC-AGC----G-AT-ataaataccttaaagc
gi|19 : CACCAAAAA-GT--GT-A-GGA-CAAGG---T-G-----AT---GTT-GG-C---C------CAAA----CG-----------
gi|2 : cggcttctaaaATTGTT-TTGAA--T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGT--TCA--GTAAA-CAAAAAAAAACAAAAAAAAAAA---A-AAA-----------------AAC-CTGTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CTG-T--TCCCC-T------------------------T--AAAT-C-------------GATGTT--TTA----T----CGTT-GGAAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-CC--TG----AC-----------AAC---------------ATAAGCACGAA---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC------GGTGGATAAG-A---------------AC-T-GT-A-TGGCGCCAAAA--GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GAT----CC-GAT----T-T-A-GT--GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATT-------ATC--GATAAC-GACAA-AACTTTTGGGGTTTAT-TTTTATATATATAC--------------C-TT-----GGTTATAT-TTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAaaaaagccatatttc
gi|20 : TT-------------------------C-TT-----GGTTTTAT-TTT-TAAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|21 : ATAAG-ACTTCACAAGA-TGCAAC-T-AT-AGTGGCACCAAAAA--T--GT-A-GGA-CAt
gi|22 : ---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-A
gi|3 : -TTGA---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GT--TCA--GTAA--CAAAA---------------AT---ACAAA-----------------AATTCTTTTA--CAG-TCA--AA--------CAAATTATTTAAGTCACTGTTCT--CCG-T-C-CCCC-TAA----AATCAT-A-AAG---GTGTCGGAAT-CAAGTCAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-C--CCTTCCT--------------------AAC-AC---------------------GAC---------------A---------A---ACAA---AG--TTTTACT---GTG--CT--GGT-G--TGATTTCTGCA-ATTCCGC-TTC----T-GGTGGACAAGGACTTCACA-GA--GCAAC-T-GT--GTGGCACCAAAAAAGTTCGT-A-GGA-CAAGGCGATCGC----ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGAT----CC--AT----T-T-AAGTC-GGC----G-ATTCTCGT--TTTGACGC-AC-AGCCCTTTGTC--ACTTTGAGAT-AGATTAGAATCAATTA-GATG-------ATC--GATAAC-GACAA-AA-----------TAC-CTT-------------------------CTTT-----GGTTTTA--TTA-CAGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAgt
gi|4 : tggATTGTG-TTGA---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGT--TCA--G-AAA-CAAAATAA------------AA---A-AAA-----------------AAC---TTTA--CAG-TCA--AA--------CAA-TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-TAA----AAAT-C-A-AAA---GG-T--GAATTCAAG-CAA-GTTGAGATGTC--T-A----T----C----AGGAAAGGTTTTCA-CG-CCTTCTA--------------------AACCAC--TG----AC-----------GACCGTGAGCATGCACTGA---------A---A-AA---AG--TTTTACCA--GCG--CTC-GGCCA-GTGATTTCT-CA-TT-CCGCCTTC----TAGGTGGACAAG-ACTTCA-AAGACTGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GTTA-GGAACAAGGCGAT-G-----------TT-GC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-AT----CCCGAT----T-TTA-ATCCGGTT---GCAT-CTTGT--TTTGACGCCAC-AACA-TTTGTCCAGCTTTGAGAT-A---------CGATTA-AATC-------ATCCAGA-AAC-AACAA-AA-----------TAC-TTT-------------------------C-TT-----GGGTGTGTATTT-TATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|5 : ATTGTG-TTTA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------ATT-CTTTTA--CAG-TCA--AA--------CTA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AGG---GT-T--GAAT-CAAG-TAAAGTCGAGATGTC--T-G----T----CA---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC-----------------------------A-AA---AG--TTTTACT---GCG--CTC-GGC-GTGTGA-TTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-GCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCA---AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT-CTCGT--TTTGATGC-AC-AGCC-TTTGTCCAACTTTGAGA--A---------CGATTA-GAT--------ATC--GATAACAAACAA-AA-----------TAT-GTT-------------------------C-TT-----GGTTTTAT-TTA-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAtgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|6 : ATTGTT-TTCA---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGT--TCA--GTAAA-AGAAA---------------ATG--A-AAA-----------------AAA-AATTTA--CA--TCA--AAA-------CAA-TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-TAA----A----------------------AT-C-------------GATGTC--T-A----T----CG---AGGAAAGATTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----ACACATGAGCACTGAA---------------A---------A---A-AA---AG---TTTACT---GCG--CTC-GGC-G-GTA--TTCT-CAGAT-CCGC-TTC----A-GGTAGATAAGAACTTCACAAGA-TGCAAC-T-GT-AGTG--GCCAAAAA-GT--GT-A-AGA-CAAG------G-----AT---GTT-GCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA----------AGAA--CA--------A-TTTCTAATGAAC-TT-CGAT----CCCGA-----T-T-A-GTC-GCC----G-AT-CTTG---TTTGACGC-AC-AGTC-TTTGTCCAACTTCGAGAT-A---------CGA-TA-AATC-------ATC--GATAAC-GACAA-TA-----------TAC-TTT-------------------------C--T-----GGTTTTA---TT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|7 : AGA-TGCAAC-TTGT-AGTG-CGCCAAAAA-GT--GT-ATGGA-CAAGG-----G-----AT---GT--GC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT--TCGT--TTTGACGC-ACAAGCC-TTTGTCCAACTT-GAGAT-A---------CGAT-----------------------AC-GACAAGAA-----------TACTTTT-------------------------C-TT-----GG-TTTAT-TTTATATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAAt
gi|8 : G---GT-C--GAAT-CAAG-TAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-CA-CCTTCTT--------------------AAC-AC--TG----AC-----------AAC---------------A---------A---A-A-----G--TTTTACT---GTG--CTT-GGC-T-GTGATTTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-ACCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCATTAAT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCACCTTTGAGAT-A---------CGATTAGAATCATTAGATATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|9 : T---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCAC-TTC----A-GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-GGCC-TTTGTCCAACTTCGAGAT-A---------TGATTA-AATC-------ATC--GATAAC-AACAA-AA-----------TAC-TAT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAA
blockSeqs : G ATT T T A C . G A A AA . A . . . A A AAAAACAAAAAAAAAAAAAAA TC . . . A A G T GT A T T AATCATAAAGGTGTCG T AAGTCAAA C . T TCGTC TT T . . . C . ACGACCGTGAGCATGCACTGAA C . . A . . CA T G G T C TA T G C C . T . A TC T T A C C CATTAAT T A GAA CAAAAC AAGC AAAAAGCCATATTT A G T G C CCA AC TATTTCGT A C . T . . . T A C T C T . C A C C . GATTAGAAT G CATTAGAT CA A G CTTTTGGGGTT T TGGGGTTATATTTTTATATATATAC T GGTAA A T G G AA C
blockSeqs : . A . T . . . . . . A . . . . . . . ATAAAAAAAAAAA C . . . . . . . . . . . AATCACAAGGGTT . AAGCAAA C . . T . . . . . . . ACACATGAGCACTGAAAA . . . . . . GT T . . . . A T A C . . . . . . . . . T . CATTAA . . . . . AAAAAGCCATATTT . A T . . . . . . . . . . . . . . . . . . . . . . T . . . T . . . . . TATATATATAC . . . A . . . A
blockSeqs : . . . T . . . . . . A . . . . . . . ATTAAAAAA C . . . . . . . . . . . AAATCAAAAGGT . AAGTAAA T . . T . . . . . . . ACAACATAAGCACGAA . . . . . . G T . . . . A T . C . . . . . . . . . C . CAAT . . . . . TATT . G A . . . . . . . . . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . TAAAAAAAA C . . . . . . . . . . . ATCGATGTT . AAGTAAA C . . T . . . . . . . ACAACAA . . . . . . G T . . . . T C . C . . . . . . . . . C . AT . . . . . TTT . C T . . . . . . . . . . . . . . . . . . . . . . T . . . T . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . ATACAAA C . . . . . . . . . . . ATAAGGGTT . AAGCAA C . . T . . . . . . . GACAA . . . . . . G T . . . . T C . C . . . . . . . . . C . AT . . . . . TTC . G T . . . . . . . . . . . . . . . . . . . . . . T . . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . ATGAAAA C . . . . . . . . . . . T . . . . . T . . . . . . . ACGAC . . . . . . G T . . . . A C . C . . . . . . . . . C . AT . . . . . TTT . G T . . . . . . . . . . . . . . . . . . . . . . T . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . AAAAAC A . . . . . . . . . . . A . . . . . T . . . . . . . . . . . T . . . . . T T . C . . . . . . . . . C . AT . . . . . TTT . G T . . . . . . . . . . . . . . . . . . . . . . C . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . AAAAAA . . . . . . . . . . . . . . . . . . T . . . . . . . . . . G . . . . . A C . . . . . . . . . . . C . . . . . . . . . C T . . . . . . . . . . . . . . . . . . . . . . T . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . GTTAAA . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . ATAAAA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons : **** *** ** ** ATAAAAA*********************************** ** ** ******** ** ATCAAGGGTT*************** AAGCAAA* ** T******** *** ******************** ** ACGACATGAGCAAA*********************************** *** ** *** ** N***** ** AT******** TTT************ ** **** **** **** **
originalCons : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAA---------------AT---A-AAA-----------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAA----A----T-A-AAG---GT-T--GAAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TG----AC-----------GAC---------------A---------A---A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
finalCons : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGT--TCA--GTAAA-CAAAAATAAAAA-----------------------------------AAC-CTTTTA--CAG-TCA--AA--------CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAAATCAAGGGTT---------------GAAT-CAAGCAAA-GTCGAGATGTC--T-AT--------CG---AGGAAAGGTTT-CG-CG-CCTTCTA--------------------AAC-AC--TGACGACATGAGCAAA-----------------------------------A-AA---AG--TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTCN-----GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GAT--------GTT-GC-C---C------GAAA----CGTTT------------CCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Alignments
lowQualScore : 111 11 3333333333333333333333333333333333333333333333333333333 1111111111 444444444444444444444 11111111 111 222222222222 66666666666666666666666666 1111111111 111 111111 2222222222 444444444444444 11 11111111 1111 111111111 11111111 11111111111 4444444444444444444444444
lowQualScore : 5 333 5 3 4 4 4 4 4 3 22 7777 3 666 3 666 7 3 6666666666666666666666666666666666666666666666666666666 55 4 7777777777 4 4 4 4 99 4 4 888 222222222222222222222 4 66666666 1 66 4 999999999 222 4 4 4 4 000000000000 4 1 5 5 22222222222222222222222222 9999999999 111 55 4 777 0 4 4 4 4 777777 1 7 3 0 3 3 3 3 2 77 2 5 2 8 3 8888888888 3 3 555 999999 7777 222222222222222 3 2 4 3 3 666 00 33333333 3 3 3 3 7777 0 7777 3 3 3 6 0000 3 3 55 3 7 3 3 3 444444444 3 33333333 55 3 3 77777777777 3 9999999999999999999999999 3 99999 3 7 4 4 55 8
lowQualScore : . ... . . . . . . . . .. .... . ... . ... . . ....................................................... .. . .......... . . . . .. . . ... ..................... . ........ . .. . ......... ... . . . . ............ . . . . .......................... .......... ... .. . ... . . . . . ...... . . . . . . . . . .. . . . . . .......... . . ... ...... .... ............... . . . . . ... .. ........ . . . . .... . .... . . . . .... . . .. . . . . . ......... . ........ .. . . ........... . ......................... . ..... . . . . .. .
lowQualScore : 0 888 0 2 4 4 4 4 0 6 33 7777 6 444 6 444 3 6 4444444444444444444444444444444444444444444444444444444 55 0 5555555555 0 0 0 0 55 0 0 222 333333333333333333333 4 22222222 9 11 4 999999999 555 0 0 0 0 555555555555 0 4 7 3 11111111111111111111111111 4444444444 000 55 0 111 7 0 0 0 0 444444 8 3 6 5 3 3 3 3 9 99 9 7 9 5 1 4444444444 3 3 888 666666 1111 777777777777777 6 8 5 6 6 444 00 22222222 6 6 6 6 7777 5 7777 6 6 3 7 4444 3 3 00 6 3 6 3 6 555555555 6 88888888 00 6 6 33333333333 6 2222222222222222222222222 3 11111 6 3 0 0 55 0
consensus : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT--AA--------------A------A------A----------AAC-CTTTTA--CAG-TCAA----------A-CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-T-AAA--T--CA---AGG---GTCG-AAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA-AA------------C-ACTG-ACGAC-ATGAG---C-----A-------AAAAAAG----------TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
Reference ( family-1209 ) : ATTGTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT--AA--------------A------A------A----------AAC-CTTTTA--CAG-TCAA----------A-CAA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-T-AAA--T--CA---AGG---GTTG-AAT-CAAG-CAAAGTCGAGATGTC--T-A----T----CG---AGGAAAGGTTT-CG-CG-CCTTCTA-AA------------C-ACTG-ACGAC-ATGAG---C-----A-------AAAAAAG----------TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----N-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATC-------ATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|1 : AA-TA-TAACTGGTAT-CAAA-TT-AAAAA--CAAGATGAT-CGTTTGTCCTATGTTCTCAATGTAAA-CATAATAGCCAT--AA--------------AATCTCGA------ATTAGATATTTAAT-TTGTTAGGCAGATCAGGAACATGATTA-CAA-TTATTTAA-TCACTGT-CTA-CCG-T-CTCCCT-A-AAA--T--CAC--AAGCGCGTTG-AAT-CAAG--AAAGTTGAGATGTCATT-ACAATT----CGACTAGGAAAGGTTT-CGCCGTCCTTCTATAAGCCAGATGTGGGC-ACGGAACGCC-TTGAGGTAC-----A-------ACAATAGAAATATAGTTTTTTACTCGAGTGGCCTCAGGC-G-GTGA-TTCT-CA-AT-CCGC-TTCAGAAA-GGTGG-----------ACAAGA-TG-AACTT-GTAAGTGGCGCAAAAAG-GTTGAT-ATGGA-CAAAG-GGT-G-----AT---GTG-GC-C---C------GAAA----CG--------------------A----A-AAA-G---CCATATTCT--------A-TTT-TAATGAACATT-CGATCGGACCCGATAAGATAT-A-GTCAAGCTCAAG-AT--TCGTTATTTGACGC-ACAAGCC-TTTGTCCAACTTTGAGATAA---------CGAT
gi|10 : AAG----------TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC----A-GGTGGATAAG-A-----------TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGT-CAATGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TTATGAAC-TT-CAAT----CCTGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATGA-AATC-------ATC--GATAAT-GACAA-AA-----------TAC-ATT-------------------------C-TT-----GGTTTTAT-TTT-acgacaaatgccaaaatctatgagcttatcttttggtatttgtattagttactcaattaataataacttcttatcttgagaccattccaattttcttcacatatatagcctagagtaaaattaatttactcatatcttttcagttcggcacaatacgctggcggaaatattaacttgtcaggtaaattgtaatt
gi|11 : GTT-TTGA---T-ACTTTTATTAA-TG-TAACTG-TAT-TAAA-TTAAAAAA--CA----GAA-A---TGTCCT-TTTTC---A-GTAAA-CAAAA-----AA--AA--------------A------C------A----------AA
gi|11 : -AAAAA--AA----AAA-C---TGGCCT-TTTTC---A-ATAAA-AAAAA-----A---AA--------------A------A------A----------AAC-CTGTTA--CAG-TCAA----------A-CAA-TTATTTAA-TCACTGT-CT--CTG-T-CTCCCCTT-AAA--T--CG---Aaaaaaaaaaaaaaactggcctttttcaataaaaaaaaaaaaaaaacctgttacagtcaaacaattatttaatcactgtctctgtctccccttaaatcgatgtttatc
gi|12 : gttttgatacttttattaatgtaactgtattaaattaaaaaacagaaatgtcctttttcagtaaacaaaaaaaaacaaaaaaaATTGTT-TTGA---C-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAAA-CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT--AA--------------A------AAAAAAAA----------AAC-CTTTTA--GAG-TCAA----------A-CAA-TTATTTAA-TCACTGT-CT--CCG-T-CCCCCC-T-AA----------------------AAT-C-------------GATGTC--T-A----T----CG---AGGAAAGGTTT-TG-TG-CCTTCTA-AA------------C-Atgtttatc
gi|13 : AAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----ATTAAA--------------A------A------A----------AAA-CTTTTA--CAG-TCAA----------A-CAA-CTATTTAA-TCACT---------G-T-CTCCCC-TAAAA--TCACA---AGG---GTTG-AAT-CAAG-CAAAGTCGAGATGTC--T-A----TCGTCCG---AGGAAAGGTTT-CG-CG-GCTTCTA-AA------------C-A
gi|14 : ATTA-AATT-------ATC--GATAAC-GACAA-AA-----------TAC-TTTTGGGGTTATATTTTTATATATATACC-TT-----GGTTATAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|15 : ATTGCTGTTGAATTT-ACTTT-ATTAA-TA-TAACTG-TAT-CAAAATT-AAAAA--CA----GAA-C---TGTCCT-T--TC---AAGTAAAACAAAA-----GT--TA--------------A------A------A----------A----CTTTA--CAG-TCAA----------A-CAA-T-ATTTAA-TCACTGT-CT--CCG-T-CTCCCC-TAAAA--T--CA---tgcctaaaaaatatcacttgtccagtagggacaagtactggcaatattaacttgtc
gi|16 : g-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTTGATAT-A---------CGATTA-AATC-------GTC--GATAAC-GACTA-AA-----------TAC-TTT-------------------------C-TTGGTAAGGTTTTAT-TTT-TATATATA-CTT-CT--TGAA-ACATCTTTTCTACATAc
gi|17 : G----------TTTCACT---GCG--CTC-GGC-----------T-CA-GT-CCGA-TTT----A-GGCG----------TCATAAAA-TACAAC-T-GT-ACTGACGCCAAAAA-GT--GA-A-CGA-CAAGGTGAT-
gi|18 : A-GT--GT-A-TGA-CAAGG---T-G-----AT---GTT-GT-C---C------GAAA----C--------------------CAAA-----AA-G---C------CATATTTCGTA-TTT-TAATGAAC-TT-CGAT----CCCAAA----T-T-A-GTC-AGC----G-AT-ataaataccttaaagc
gi|19 : CACCAAAAA-GT--GT-A-GGA-CAAGG---T-G-----AT---GTT-GG-C---C------CAAA----CG-----------
gi|2 : cggcttctaaaATTGTT-TTGAA--T-ACTTTTATTAAATG-TAACTG-TAT-TAAA-TT-AAAAAA-CA----GAAAC---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AA--AAACAAAAAAAAAAAAA------A------A----------AAC-CTGTTA--CAG-TCAA----------A-CAA-TTATTTAA-TCACTGT-CT--CTG-T-TCCCCT-T-AAA--T--C---------------------------------GATGTT--TTA----T----CGTT-GGAAAAGGTTT-CG-CG-CCTTCTA-AA------------C-CCTG-ACAAC-ATAAG---C-----ACG-----AAAAAAG----------TTTTACT---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCGC-TTC------GGTGGATAAG-A---------------AC-T-GT-A-TGGCGCCAAAA--GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAA------------------T-TTCCT-TAGATTG-AAA-G---TAGA---CA--------A-TTT-TAATGAAC-TT--GAT----CC-GAT----T-T-A-GT--GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCAACTTCGAGAT-A---------CGATTA-AATT-------ATC--GATAAC-GACAA-AACTTTTGGGGTTTAT-TTTTATATATATAC--------------C-TT-----GGTTATAT-TTTTTATATATA-CTT-CT--TGAGCACATCTTTTCTACATAAaaaaagccatatttc
gi|20 : TT-------------------------C-TT-----GGTTTTAT-TTT-TAAATATA-CTT-ATAATAAG-ACATCTTTTCTACATAAtcgcctaaaaaatatcacttgtccagtagggagcaagtactaggcaatattaacttgtccttaaattgtttctgcggtctaaaaaaatggacaagcgttatatgtcgagccttgataccctt
gi|21 : ATAAG-ACTTCACAAGA-TGCAAC-T-AT-AGTGGCACCAAAAA--T--GT-A-GGA-CAt
gi|22 : ---AGGAAAGGTTT-CG-CG-CCTTCTA-AA------------C-A
gi|3 : -TTGA---T-ACTTT-ATTAA-TG-TAACTG-CACGCAAA-TT-AAAAA--CA----GAA-C---TGTCCT--GTTC---A-GTAA--CAAAA-----AT--AC--------------A------A------A----------AATTCTTTTA--CAG-TCAA----------A-CAAATTATTTAAGTCACTGTTCT--CCG-T-CCCCCT-A-AAA--T--CATAAAGGT--GTCGGAAT-CAAGTCAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-C--CCTTCCT-AA------------C-AC-----------GA----C-----A-------AACAAAG----------TTTTACT---GTG--CT--GGT-G--TGATTTCTGCA-ATTCCGC-TTC----T-GGTGGACAAGGACTTCACA-GA--GCAAC-T-GT--GTGGCACCAAAAAAGTTCGT-A-GGA-CAAGGCGATCGC----ATTAAGTTTGC-G---C------GAA-----CG-----------T-TCGCT-TACAATG-AAACG---TAGAA--CA--------A-TTT-TAATGAAC-TTTCGAT----CC--AT----T-T-AAGTC-GGC----G-ATTCTCGT--TTTGACGC-AC-AGCCCTTTGTC--ACTTTGAGAT-AGATTAGAATCAATTA-GATG-------ATC--GATAAC-GACAA-AA-----------TAC-CTT-------------------------CTTT-----GGTTTTA--TTA-CAGATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAgt
gi|4 : tggATTGTG-TTGA---TTACTTTTAT-AA-TGCTAACTG-TAC--AAA-TT-AAAAA--CA----GAA-C---TG-CCT-TGTTC---A-G-AAA-CAAAATA---AA--AA--------------A------A------A----------AAC---TTTA--CAG-TCAA----------A-CAA-TTATT--A-TCACTGT-GTGTCCG-TTCTCCAC-T-AAAAAT--CA---AAA---GGTG-AATTCAAG-CAA-GTTGAGATGTC--T-A----T----C----AGGAAAGGTTTTCA-CG-CCTTCTA-AA------------CCACTG-ACGACCGTGAG---C-----ATGCACTGAAAAAAG----------TTTTACCA--GCG--CTC-GGCCA-GTGATTTCT-CA-TT-CCGCCTTC----TAGGTGGACAAG-ACTTCA-AAGACTGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GTTA-GGAACAAGGCGAT-G-----------TT-GC-C---CCAAAACGAAA----AG---------------CATATAGATTGGAAA-G---TAAAAACCA--------AATTT-TAGTGAAC-TT-C-AT----CCCGAT----T-TTA-ATCCGGTT---GCAT-CTTGT--TTTGACGCCAC-AACA-TTTGTCCAGCTTTGAGAT-A---------CGATTA-AATC-------ATCCAGA-AAC-AACAA-AA-----------TAC-TTT-------------------------C-TT-----GGGTGTGTATTT-TATATATAGCGT-CT--TATA-TCATCTTTTCTACCTAAtgcctataaaaaaaaaatatcacttgtccagttggacaagtactgggcaatattaactgtccgtaaaatgtttactactggtaccggactagcgttaaatgtcgagcc
gi|5 : ATTGTG-TTTA---T-ACTTTTATTAA-TG-TAACTG-TAC-CAAA-TT-AAAAA--CA----GAA-C---TGTCCT-TGTTC---A-GTAAA-CAAAA-----AT--AA--------------A------A------A----------T-T-CTTTTA--CAG-TCAA----------A-CTA-TTATTTAA-TCACTGT-CT--CCG-T-CTCCCC-T-AAA--T---A---AGG---GTTG-AAT-CAAG-TAAAGTCGAGATGTC--T-G----T----CA---AGGAAAGGTTT-CG-CG-CCTTCTA-AA------------C-ACTG-ACGAC-A------------------------AAAG----------TTTTACT---GCG--CTC-GGC-GTGTGATT-CT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-GCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCA---AT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TAGATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT-CTCGT--TTTGATGC-AC-AGCC-TTTGTCCAACTTTGAGA--A---------CGATTA-GAT--------ATC--GATAACAAACAA-AA-----------TAT-GTT-------------------------C-TT-----GGTTTTAT-TTA-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAAtgcaactaaaaatatcactgtccgtagaattgtttttgctggtactgtacagcggacaagcattaatgtcagccc
gi|6 : ATTGTT-TTCA---T-ACTTTTATTAA-TG-TAACTA-T-C-CAAA-TT-AAAAAAACG----GAA-C----GTCCT-TGTTC---A-GTAAA-AGAAA-----AT--GA--------------A------A------A----------AAA-AATTTA--CA--TCAA----------AACAA-TTATTTAA-TCACTGT-CT--CTGAT-CTCCCC-T-AAA----------------------AT-C-------------GATGTC--T-A----T----CG---AGGAAAGATTT-CG-CG-CCTTCTA-AA------------C-ACTG-AC-AC-ATGAG---CACTGAA-------AAAAAAG-----------TTTACT---GCG--CTC-GGC-G-GTA--TTCT-CAGAT-CCGC-TTC----A-GGTAGATAAGAACTTCACAAGA-TGCAAC-T-GT-AGTG--GCCAAAAA-GT--GT-A-AGA-CAAG------G-----AT---GTT-GCACGAAC------GAAAAAGCCA-----------TATTCCT-TAGATTA----------AGAA--CA--------A-TTTCTAATGAAC-TT-CGAT----CCCGA-----T-T-A-GTC-GCC----G-AT-CTTG---TTTGACGC-AC-AGTC-TTTGTCCAACTTCGAGAT-A---------CGA-TA-AATC-------ATC--GATAAC-GACAA-TA-----------TAC-TTT-------------------------C--T-----GGTTTTA---TT-TATATATA-CTT-CT--TGAG-ACATCTTTTCTACATAA
gi|7 : AGA-TGCAAC-TTGT-AGTG-CGCCAAAAA-GT--GT-ATGGA-CAAGG-----G-----AT---GT--GC-C---C------GAAA----CG----------------------A--A-AAA-GCCATATTC--CT--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-AGC----G-AT--TCGT--TTTGACGC-ACAAGCC-TTTGTCCAACTT-GAGAT-A---------CGAT-----------------------AC-GACAAGAA-----------TACTTTT-------------------------C-TT-----GG-TTTAT-TTTATATTTATA-CTTGCT--TGAGAACATCTTTTCTACATAAt
gi|8 : G---GTCG-AAT-CAAG-TAAAGTCGAGATGTA--T-A----T----CG---AGGAAAGGTTT-TG-CA-CCTTCTT-AA------------C-ACTG-ACAAC-A------------------------AAAG----------TTTTACT---GTG--CTT-GGC-T-GTGATTTCT-CA-AT-CCGC-TTC----T-GGTGGACAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGG-ACCAAAAA-GT--GT-A-GGA-CAAGGCGAT-GCATTAAT---GTT-GC-C---C------GAAA----CG-----------T-TTCCT-TACATTG-AAA-G---TAGAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-AGCC-TTTGTCCACCTTTGAGAT-A---------CGATTAGAATCATTAGATATC--GATAAC-GACAA-AA-----------TAC-TTT-------------------------C-tgcctaaaaataccactttccaagctcggacaagtaactggcaatattaacttcgccgtaaattgtttcctgctggaccggaccaagcgttaattgtcgcaagcccttgaatcttt
gi|9 : T---GCG--CTC-GGC-G-GTGATTTCT-CA-AT-CCAC-TTC----A-GGTGGATAAG-ACTTCACAAGA-TGCAAC-T-GT-AGTGGCGCCAAAAA-GT--GT-A-GGA-CAAGGCGAT-G-----------TT-GC-C---C------GAAA----CGAAAAAGCCATAT-TTCCT-TAGATTG-AAA-G---TAAAA--CA--------A-TTT-TAATGAAC-TT-CGAT----CCCGAT----T-T-A-GTC-GGC----G-AT-CTCGT--TTTGACGC-AC-GGCC-TTTGTCCAACTTCGAGAT-A---------TGATTA-AATC-------ATC--GATAAC-AACAA-AA-----------TAC-TAT-------------------------C-TT-----GGTTTTAT-TTT-TATATATA-CTT-CT--TGAG-ACATCTTTTCCACATAA