lowQualScore : 11111111 111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333 1111111 11111111111111111111111111111111111111111111111
lowQualScore : 1 55 1 2 3333 77777777 00000000 11 222 4444 1 222 22 1 22 11 11 44444444444 333333333333333333 111 2222 1 1 22 4444 11 11 000000000000000000000000000 11 44444444 1 333333333333 444444 11 99999999999999999999999999 1 11 1 1111 333333333333 11 111 888888888888888888 1 11 1 11 11 11111 1 111 22222222 2222222 1 77777777777777777 22 444444444 2222 33333333333333333 33333 1 1111 11 1 3333 111 2 11 2222222 1111 1111 33333333333333333333333 222 77777777777777 2222222 1 1 11 1 2222 222222 222222222 1111 1 333333 11 11 1111111 11111 555555555555555 11111 111 1 33333333 333333333333333 1 11111 1111 11 2222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 444444444444444444 11 77777777777 1 8888888888888888 33333 1 222222 666666666666666666 22222 2222 1 1 1 666666666 11 2 1 111 1111111 11 11 1 111 1 33 3333333 333333 555555555555555555555555555 111 22 1 22 22 1 2222 1 11 222 88888888888888888888888888888888888888888888888888888888888888888888888888 0000000 11 111 2 333333 55555 1 22 222 2 33333333333333333333333333333333333333333333333 6666 5555
lowQualScore : 5 55 55 5 0 2 1111 66666666 4 3 4 2 4 3 00000000 88 111 0000 5 999 2 4 2 77 1 0 55 33 2 11 2 66666666666 4 0 3 999999999999999999 6 333 6 4444 2 4 0 77 8 1111 88 2 00 777777777777777777777777777 44 3 00000000 8 7 0 666666666666 6 3 000000 22 99999999999999999999999999 9 0 33 0 6666 777777777777 2 33 7 3 999 222222222222222222 0 33 3 0 00 33 44444 2 6 0 444 444 88888888 2 7777777 3 0 99999999999999999 00 0 222222222 6 0 0 1111 2 88888888888888888 33333 0 0 9999 0 00 0 0 8888 111 8 1 6 0 55 1 99 6 3333333 3 2222 6 99 6666 2 6 22 99 44444444444444444444444 0 2 7 444 22222222222222 3 3333333 3 6 0 33 0 4444 888888 333333333 0 4444 3 0 111111 8 8 99 0 88 22 3 8888888 4 99999 6 222222222222222 44444 444 3 33333333 6 99 6 555555555555555 4 66666 7777 3 66 8 1111111111111 5 8 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 33 7 999999999999999999 66 6 22222222222 6 6 6 8 3 6 7777777777777777 999 0 1 8 6 88888 7 1 1 3 9 000000 2 111111111111111111 00000 0000 3 0 0 3 6 888888888 999 99 2 2 44 0 5 666 8888888 33 7 33 3 2 2 0 3 55 555 4 0 22 66 1111111 0 44 444444 6 0 5 1 444444444444444444444444444 444 55 3 4 0 55 6 4 6 00 3 8888 1 7 88 7 4 555 4 33333333333333333333333333333333333333333333333333333333333333333333333333 6 6 8888888 6 22 777 0 4 111111 22222 6 3 77 111 1 3 55555555555555555555555555555555555555555555555 7 8 2222 3333
lowQualScore : . .. .. . . . .... ........ . . . . . . ........ .. ... .... . ... . . . .. . . .. .. . .. . ........... . . . .................. . ... . .... . . . .. . .... .. . .. ........................... .. . ........ . . . ............ . . ...... .. .......................... . . .. . .... ............ . .. . . ... .................. . .. . . .. .. ..... . . . ... ... ........ . ....... . . ................. .. . ......... . . . .... . ................. ..... . . .... . .. . . .... ... . . . . .. . .. . ....... . .... . .. .... . . .. .. ....................... . . . ... .............. . ....... . . . .. . .... ...... ......... . .... . . ...... . . .. . .. .. . ....... . ..... . ............... ..... ... . ........ . .. . ............... . ..... .... . .. . ............. . . .............................................................................................................. . .. . .................. .. . ........... . . . . . . ................ ... . . . . ..... . . . . . ...... . .................. ..... .... . . . . . ......... ... .. . . .. . . ... ....... .. . .. . . . . . .. ... . . .. .. ....... . .. ...... . . . . ........................... ... .. . . . .. . . . .. . .... . . .. . . ... . .......................................................................... . . ....... . .. ... . . ...... ..... . . .. ... . . ............................................... . . .... ....
lowQualScore : 0 00 55 5 0 5 5555 00000000 0 0 0 5 0 0 00000000 00 000 5555 5 000 5 0 5 55 2 5 00 88 5 22 5 88888888888 2 2 2 555555555555555555 0 777 7 0000 3 0 0 55 8 5555 88 5 22 555555555555555555555555555 88 2 22222222 2 8 0 222222222222 0 0 555555 55 22222222222222222222222222 0 0 00 0 0000 555555555555 2 88 0 2 000 555555555555555555 0 88 2 5 22 00 22222 2 5 0 000 222 55555555 0 8888888 2 0 77777777777777777 77 7 222222222 5 2 2 2222 5 88888888888888888 55555 8 0 8888 2 22 2 0 8888 000 0 4 4 6 88 7 22 7 5555555 7 5555 7 22 0000 5 7 00 22 77777777777777777777777 2 0 0 777 77777777777777 7 7777777 3 7 0 88 8 8888 222222 555555555 2 8888 2 0 222222 0 0 00 8 44 44 2 8888888 0 00000 8 444444444444444 22222 555 3 00000000 7 22 7 000000000000000 3 77777 0000 2 44 0 2222222222222 6 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 88 2 555555555555555555 22 7 00000000000 7 7 7 3 3 7 7777777777777777 000 7 0 3 7 00000 0 0 0 0 2 222222 5 222222222222222222 00000 8888 0 0 0 2 0 555555555 000 00 5 5 00 0 5 888 0000000 00 0 88 2 5 5 0 0 88 222 0 0 22 00 8888888 8 44 888888 4 6 8 4 222222222222222222222222222 000 55 0 0 0 55 0 0 7 00 3 3333 0 3 33 3 7 777 7 00000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0000000 0 00 000 0 0 000000 00000 0 0 55 000 0 7 33333333333333333333333333333333333333333333333 0 3 0000 5555
consensus : CATGATCTATAATGTANNAGCTACATCACACCCGNAATATCGGATCGCACATGT-TGTAGNCNTTNATNAANGATNGTCACCCCNAAACAAGCACACTGTTCTCTGTCATTGTNGTCAACCAAATGANCNCTNACAGTGGTTTCCGGTATCA-CAA--GGCGTCCGACANGGAGGT-TT--TTNTC-ACTTTCCTATATC-----TCGT----ATAT-CATAGACGAT-TTTCTAT---ATGAGATNCAA-AATCTAAGTGTAC---AACAT-TGGCGTCTTCA-GCAT---TCAAGGCTCAAACCCNA-ACCTTGGCGGACGATATCTG----CNTTATTGCNCTCAC-TCC----AC-AATGGGCTNCAAAA--NGT-TCTA-NACAAN---ATCTTCCA-----T-A------TTCCACGCG-NTGGCG-ATTTACGT--TCAATGCT---A-AATAAATCCAA--CGTCCTTCATTTCNATCCAAAAAA-----GGT---------G-CAAA--CAACACCGAC-GC-NTTGGCAT--GGCACCT-AGGC--AAGAANGCTATCC-A-----NTCTTCCAA-----GNAATACAAACATCT-TGGAATCTT--TG--AGCTCCAA-T-TTGAT-CCCAGTAGCAAAA--CNCA-AATGCNTGCATGAAAG----GACGNCAG--NCATATTTT--GCGCTTAAA---NCTTCTG-AA-CAGCCGAA-CCCAA-TC----ACTGTC-T-CCAAG-CTATACAGAA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ACGGAA-GCG--AACTG-T--GGTG-CGACCTACGA--CG---ANAAG-AT-G-TTGAA-GACCTCAGCACATTTCAACACTTCAT-NGCAAAACACGCTA-GCA--TGGGCCTNCCCCA-ACA---AACT-AGATCGGACA-TGTG--TGAAAGCTTA--TTAGGTCTT--CTT-CCTATCA---TCGCGG--A-GATC-GACAAT-TAAGA-A-ACT--CCAATTTTTTGGCCGN-CTNTG--T-G--AGCTCG-A---TACCAA-N---T-----AT--CT-CG--CAAAACGNAT-ATTCC--TT-AC-CC-GACTTT--TTTCTTAT-ACGACGAA-TC---CCGANATCA-----AACAT----CGTGGNTTT-ATCCANGA-CGTC-ATC-CCCAT-ACT-TTGACAAAA---TA-CAACCTGC----ATC--C-----TGTTNTTA-CT-CATTA-TCTNN------AAGGTGGT-----NNCTTCTCCTCCAA-A----T-CGNA-ATGGAAAANTTNTGTNAAAGCCNC------CGTA---ATCGCTTAACACTCCGA----A-GACG-CAGCGAATGCTTTCAG-ATAC-------------TTCCTTTNTNCGATTCAACACTAT-TACAGCAGGAAGACCGCCAACA--CCGNTNTGGAA---ANTCCNT-C----GCAACATCNACGAGATTNNNNTNTGC-AAG-TTTATTGTCAATTT--A---TGGACCCTTNNNGACNCTCCNCCCGAAN-CTTGTCTCACT--NTGT-GCGA-AACCNTTTACA--AACGTNTTCNAGCAC-GTNTCNACCACCTGTCCGGAAACGGCTNCTTTTCGNG-ACGC-TTGGTGGGAAACN-N----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-ACTTA----TCTGGACTGT---CTCAA--NACG-ACTTGTNTTCNT-TTATCCTCGGTGCNAGGCACAT-GATCTCAG-AC----TTGCCCGATT--ACGATCTTCCGGCA--CTTCATCTCCTNAACTTTCGTTTCATTAAGAGATGCAGCGCATGTATCACAAAAACCTTCGTGTTGCATTGTAACTTACACTTGT--------------TTTTCTGGTTTATGTTTATATAGAATTCCTGTGATAA-----TATCCTTCTCATCCNCTGTACATCNTTCCNCCTATCCCTCATCAATTCTTTNGCTTACATNTCCATGCAC-TTAA----ATG---T-GTAATTGT---ATAA-TGAATTN-TT----TA-T-TGTTCATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAAAGA
Reference ( gi|1 ) : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCC--------TACATTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAA--GGCGTTAGACAGGGAGGT-TT--TTATCAACCTTTCTATATT-----TAGT----ATATACATAGATGGT-TTGCTAC---ATGAAATACAA-AATCT--GTGTACT--AATAT-GGGCATTTTCA-GCATA--TCA---CTCAAATC----ACTT--GCGGACAATATCTG----CTGCATTACACTTAC-TCC----A--AATGGGTTACAAAA--TAA-TCTA-CACAAA---AT-----A-----T-A------TTCAAAGCA-ATGGCG-ATTTACGC--TCAATGC----A-AATAATTTCAA--TGTCCTTCATTTCTACCCAAAAA------GG----------G-CAAA--CAACACCGAC-AC-ATTAACAT--GGTACCT-AGGC--AAGAATGTTATTC-A-----CTCCTCCAA-----GGAATATAAACATCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CCCAAAATGCCTGCATGAAAG----GACGCCAG--ACATGCTTT--GCACTTAAA---TCTTCTG-AA-CAGCTGAA-CCCAA-TC----ACTGTC-T-CCAAG-CTATACAGAATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACTG-T--GGTG-CGACCTACGA--CG---AAAAG-AT-G-TTGAA-AACCTCAGCGCATTTCAACAATTCAT-AGCAAAGCACACGATGCA--TGGGCCTCCCCCA-GCA---AACT-AGATCGGACA-TGTG--TGAAAGTTTA--TAAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AAT-TAAGA-A-ACT--TCAATTTTTTGAACGT-CTCTG--T-G--AGCTTG-A---TACTAA-C---T-----AT--CT-CA--CAAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCGTAT-ATGATGAA-TC---CTGATATCA-----AACAT----CGTGGACTT-ATCCAGAA-TATT-ATA-CCCAT-A---TTGACAAAA---TA-CAATCTGT----ATC--C-----TGTTTTTA-CT-CATTA-TCTTG------AAAGCGGT-----GTCTTCGTTTTCAA-A----C-CAGA-ATGGAAAAGTTCGGTAAAACCCTC------CGTA---ATCACTTACCACTCCGATTATAGGACAACAGCGCATGGTTGCTG-ATCC-------------CGACTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCACCAACA--TCGTTCTGGAAT--AGTCCA--C----GCAATATTGACGAGATTCTTCTTTGC-AAG-TTTATTTTCAA-----A---TGGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACT--TTGC-GCGA-AACCCTTTACA--AACGTGTTCGAGCAC-GTATCCACTACCTGTCCGGAAACGGCTTTATTTCGTG-ACGC-ATGGTGGGGAACC-T----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GA-A-TTA----TCTGGACTGT---CTCAA--TACG-ACTTGTATTCAT-TTACCCCCGGTGCAAGGCACAT-GATCTCAG-AC----TTACCTGATT--ACGATCTTCCAGCA--CTTCATCTCCTAAACTTTCGTTTTA--------------------ATAACAAA---TTTCGTGTTACATTGTAATTTACTCTTGTTCATCTGTGCTTTGTTTTCTGGCTTATGTTCATATAGAATTCCTGTGATTATTATTTGTTTTTCTCATCCACTATAT-TTATTT-ATTT-TCCCTCAT-GATTATTTTGC--ACATTTCCATACACATTAATT-AATGCACT-GTATTTGT---ATA--TGAATTG-------TA-TATGTTAATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|7 : CATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCAT---TGTCA-TCAAATGAGCTCTGAC--TGGATTCCAGATTCC-CAA--GGCGTTAGACATGGAGGTGTT--TTGTCAACCTTTCTATATT-----TAGT----ATATACATAGACGGA-TTGCTAC---ATGAAATACAA-AATCT--GTGTACG--AATAT-TGGCATTTTCA-GCATT--TCAAG-CTCAAATCCAACACTT--GCGGACGATATTTGTTTGCTGTATTCCACTTAC-TCA----A--AATGGGCTACAAAA--TAT-TCTA-CACAAA---AT-----A-----T-ACGATTATTCAACGCA-ATGGCG-ATTTACGT--TCAATGC----A-AATAAATCCAA--TGTCCTTCATTTCAATCCAAAAAA-----GG----------G-CAAA--CAACACCGAC-AC-ATTAACAT--GGCACCT-AGGC--AAGAATGCTATTC-A-----CTCCTCCAA-----GGAATATAAACATCT-TGGAATCTT-----------------TTGAT-CCCAGTAGCAGAA--TC-------------TCAAAG----GACGCCAG--GCAT----T--GTGCTTAAA---CCTTCTG-AA--AGCTGAA-CCTAA-TC----ACTGTC-T-CCAAG-CTATACAGAAAAG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACTG-C--GGTG-CGACCTACGA--
gi|13 : aagtttgacaccgtatggagaTAAAAACTAT-TCACACTCGTAATATCG----GCACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACAT--TTCTC---CATTGTAGTTAACCA---GACCACTTATAGTGGCTTCCAGTATC----ATTGGC-TCCGACATGGAGGT-TT--ATTTC-ACTTTTGTAT-TC-----TCGT----AT-T-CATAGA
gi|3 : attatGGTTTCCGGTATCAACAA--GGCGTCCGACAGGGAGGG-TG----AT--ACTTTCCTACATTCTTGCTAATCCTCGTATTCATAGACGATCTTTCTATTAGATGA--TTCAA-AATCTAAGT-TA----AACATTGGGAGTCTTCA-CTAT---TCAAAGC-CAAACCCT--ACCTTGGCAGATTATATCTG----TATTATTGCTCTCAC-TCCTACGA--AA---GCTCCAAAA--AGT-TCTA-GACAAC---ATCTTCCA-----TTA------TTCCATGCG-CTGGCG-ATTTAAACCTTTAATGT----GCAATA-TTTCAT--CGTCTTCTATTTC-ATCTAAAAAATGTTTGGTATATTCCCCG-CTAA--AAACACTCAT-GC-CCTGGCGTCTGGTA----AAAA--AAAAAAACTATCCGA-----ATCTTCCAATTTCAATACTATCAAC-TTT-TGAATTCTT--TA--AACTCTAA-T-TTGA--CCCAGGAAAAAAA--CATATAATGCTTGTATGAAAGGACTGACGACAG--CAATATTTTAAGCTCTTAAA---AGTCCGG-AAGCCACTTAA-GCCAA-CCATA-ACTGCCGTGCCAAACCTTTATAAAAGAG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATTACT--GGTG-CGA-ATACGT--CGGGCAAAAG-A--A-T--AG-GCCCTTAACACATTCCATTCATTCAC-G--AAAACATGCTA-GC----GGGACTGCTCCA-ACAGCCAACTAAGACAGAACA-TGTGCCTGAAAGCCTC--T-AGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GA-CATAAAAGATA-ACTGACAAATTCCCTGGCCGTCCTCTG--C-GAAAACTCA-G---CAC-AA-CG--TAGAAAAT--TTGCA--AAAAACGTAT-ATTCA--TC-AT-TC---TCTG--TTTCCTAC--TGTTCAA-TA---GTGCCACTACTAACAACAC----TATGGGTTT-ATTCAAGA-CATCGATC-CCCAT-ACTTTTGACCATA---GA-C---CTGC----ATC--A-----TGTTT--------ATCA-TCTT
gi|11 : gtgGTTTCCGGTATCA-CAA--GGCGTCCGACAGGGAGGT-GTACTT-TCCACATTCTTGTACC-----TCGT----AT-T-CATAGACGAT-CTTCTAT---TAGAGATTCAA-AATCTAAGTTTA----AACAT-TGGAGTCTTCA-ATAT---TCAAAGCTCAAACCCT--ACCTTGGCAGATTATATCTG----TATTATTGCTCTCAC-TCC----ACGAA--AGCTCCAAAA--AGT-TCTA-GACAAC---ATCTTCCAT----T-A------TTCCATGCG-CTGGCG-GTTTACCT--TTAATGCTGCAA-AA----TCCAA--CGTTCTTTATTTTCA-TCAAAAA------TGTT--------G-TAAT--C-CCGCTGAA-ACTCTCAGC-T--GGCGTCT-TGGTAAAAAAAAACTATCG-A-----ATCTTCCAA-----TTCATACAATCATCT-TGGAA
gi|4 : ATACAATAATCT--GTGTACCGAAATAT-TGGCATTTTCATGCATAAATCAAG-CTCAA-TCCGAAACT---GCGGACG-T-TCTT----CTTATTTGCGCTTACCTCC----AT-AATGGGCTACAAAAGATAGCTCTAACACAAATATAT-----AACGATT-A------TTCCAAGCAGATGGCGTATTTACGT--TCAATGCT---A-AATAAATCCAACATGTCCT-CATT-CTATCCAAAAA------GG----------GTCAAAACCAACAC-GACTAC-ATTGA-AT--GGCACCTTAGGC--AAGAATGTTGTTC-AGACGTCGCTCCCAA-----GGAATACACACATCTATGGAATCTTATTGTGAGCTCCAAATATTGATTCCCAGTAGCAAAAATCTCAAA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTTT---CGCTAGAAACATCTTCTGTAA-CA-CTGAAACCCAAATC----ACTGTC-T-CCAAG-CTATACAAAA-AG--TTGTCC--TACTCATCA----TA-CTGT--A-GGAA-GCG--AACTGGT--GCTGGCGACCTACGA--CG---ACA-G-AT-ACTTGAAGAACCTCCTCACATTTCAACACTTCATCAGCAAAACACAACA---A--TGAGCCTCCCCCACGCA---AACA-AGATCGGACA-TGTG--TGAAAG-TTA--TTAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATT-TAAGA-A-ACTA-TCAATTTGTTGGACGC-CTTTGGTT-G--AGCTAGAA---TACTAATT---T-----AT--CT-CAACCAAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGGTATAACGA-GAATTC---CTGA-ATCA-----AACAT----CGTGGATTTCATCCAAGA-CA-T-ATC-CCTATAA---CTGA-AAAA---TCTCAGCCTGTAATGATA--C-----TGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCC-TCTGCAACAGTCCC-CAAA-GTGGAAAGGTTC--TGAGAGGCAC------CGTA---ACTGCTTGACACT
gi|16 : AATGCATGCAGAAAAG----GACAACAT--TCACAGTCT--GCTCTTAAA-------ATA-AA-CGGACAAA-TCAAT-TCTGCGACTTTA-T-CCAAG-TTTTATA-AATGGC-TTATTC--TTCCT-GGAA---TC-TTAT--ACGGAA-GCG--AACTG-T--GGTG-TGATATCAGA--CA---GAAAG-AT-G-T
gi|2 : G-TTATACAGAA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACTT-TCTGGTG-CGACTTACGC--CA---CCAAGCAT-T-TTCCA-G-CCTCAGTACTCTTCAACACTTTAT-TGCAAA-----CTATGCAATTGGGCTTTACCAA-ATA---TACT-A-ATCTGACAATTTG--TTGAAGCTTACTTGACATCTT----T-TCGATTC---TT-CTG--A-ATTCTGACAA---AAGA-AGACT--CCAATTTTTTGGCCGA-TTATG--TTG--AGGTTG-GATTTACCAA-AAGGT-----TT--CT-AC--CAAAA-AGATTATTTC--TTCACACC-GACTTT--TTTCTTAT-ACCAAGTC-TC---CCGAACTCA-----AA-ATACTCTTTGGCTTT-ATCCATGA-CGTC-ATT-CTC-T-ACTCTT--CAAGACCATAGTAACCTGC----CTT--CAGCACCGTCGTTA-CT---TTACTCTAC------AAGATGAT-----TACTTCTCTTCCAA-A----TGCATC-ATGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTATCATTTTACACTCCGA----ACGTC--CAGCGAATGCTTTCAGCATAC-------------TTCCTTTATACAGTTCAACACTAT-TACAGCAGGAAGACC-CCA-CAAGCTAATATGGAA----ATCCTT-C----G-AACACCTATGAAATTGAAATTTGC-AAAATTTATTATCAATTT--A---TGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CT--GTGTAGCAACAATTTTGTGCA--A-CATTTTCCAGCGC-ATCTCAACCACCTGTCTAGGAACAGCTGCTTTTCGAG-ATGCTCTGGTGGGTTACA-G----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGA-ACTTAGCGGTCT---CTAT---CCCAG--GACG--TTTATCTTTTT-TTA--CTTGGTGCTAG
gi|21 : gtatcgcggAG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CCA-T--G-TG-CGACCTCTCATTC------AAG-ATAG-TTGAA-AAATTCAGCGCAatctatcacaacactattgctcaatttgacggacccggcctacatatttcttaatttccggtttttaagagatgtagcaagctttggtgcaaacgacagttggcgtcatgtcgcctctttaatatattctttttccagtgtttattctcaaaatgtaagaaacgctctagacagcaactttttaaccatcttctgtactttttccccttctctcttcttttgtttatattatgtacttaaatgtgtaattgtctaataatttaatttctttattgttcatgtaatctccaatgggaggaaaaaaagaaagaat
gi|6 : CGAACA-TGTG--TGAACGTTTA--TTAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AAT-TAAGA-A-ACT--TCAATTTTT-GGACGT-CTCTG--T-G--AGCTTG-A---TACTAA-C---T-----ATATCT-CA--CAAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCGTAT-GTGATGAA-TC---CTGATATCA-----AACAT----CGTGGA-TT-ATTCAGGACTATT-ATATCCCAT-A---TTGACAAAA---TA-CATCTTGT----ATT--C-----TGTTTTTA-CT-CATTA-TCTCG------AAAGTGGT-----GTCTTCTCTTCCAA-A----T-CAGA-ATGGAAGAGGCCTGTAAAATCCTC------CGTA---ATCACTTACCACTCCGATTATAGAA-AACAGCGCATGGCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCACCAACA--TCGTTCTGGAAT--ATTCCA--C----GCAATAATAACGAGATTCTTCTGTGC-AAG-TTTATTGTCAAATT--A---TGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACT--TTGC-GC-A-AACCCTTTACA--AATGTGTTCGAGCAC-GTATCCACTACCTGTCCGGAAACGGCTTTATTTCGTG-ACGC-TTGGTGGAAAACC-T----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC------------------GACTGT---CTCAA--TACG-ACTTGTACTCAT-TTATCCTCGGTGCAAGGCACAT-GATATCAG-AC----TTACCCGATC--ACGATCTTCCAGCA--CTTCATCTCTTAAACTTTCGT
gi|8 : ctaAAA-A-ACT--CCTATTTTTTGACCGA-TTATG--G-G--AATTGG-A---CACCAA-A---A-----CT--CT-TG--AAAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCTTAT-A-GAC-AG-TCTCTCT-AGATCA-----AACA
gi|5 : tttcttctgaaatagacaaaag--CAAAA-AGAT-ATTTC--TT-CA-CC-GACTTT--TTTCTTAT-AT--CCAA-TCTT-CCGAACTCA-----AACAT----CTTGGCTTT-ATCCATGA-CGTC-ATT-CCTCT-A---CTCTTCAAA---TA-TAACCTCC----ATCAGC-----ACCTCTTA-CT-C--TA-CCTAC------AATATGGT-----TACTTT-CCTCCAA-A----A-TGCATATGGAAAACTTGTGTTAAAGCTT---------------TCATTTA-CACT-CGA------GACGTCAGCAAATGCTTTCAG-ATAC-------------TTCCTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCCCACAA--GCTATATGGAA---AATCCCTTC----G-AACATCCATGAAATTGAAATTTGT-AAA-TTTATTATCAA-----ATTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CT--GTGT-G-GC-AACAATTT-CGTCAACACTTTCCAGCAC-ATCTCAACCACCTGTCTAGAAACAGCTGCTTTTCGAG-ATGC-TTGGTGGGATACG-G----TGATTGACTA--C---GATATCGTGCTTAGTGCT--GA-ACTTA-----GTGGTCTCTATCCTCAG--GACG--TTTATCTCTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAA-ACGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGATATTCTTAACTTCCGTTTTctttgtcttcatacatgacgtcatcactctacacttcaagtattttaaactccatcagcacatcccactctatctataacatggttactttcctccaaaatggaaaatttcagtcaaagcagcaataacagtttgcatttacactcaaaacgtcagatctctctcagatacttcgtttctccaattcaatactattacagcaggaagacccttgtaagctatctgggaaatccactctagcatccatgaaatagatttgttaaatttattaccaaattgtgggtttttccttactcttcttcagaatcttgtctcatgtgtggtaaacaattcatgaacatttttagcacacctcgcaacactcaaaaatccacacaaaccagtaggaacaattgctttttggaaatgcttgatggaaacatttatttactatgatattttgcttatgtcttgaac
gi|9 : ttacCGCCAACA--CCGCTCTGGAAGCAACTCCA--CTCACACAATAT-GA-GAGATCTTCCTGGGCTAAG-TC-ATTGGTAATAATTA---TGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATCC-CTACCTGTCCGGAAACGGCTCTCTTTCGTGAACGC----CTGGGGAACCAT----TAG-TGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGA-TTA----TCTGGACTATC--CTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAGAAC----TTGCC-GATT--ATGATCTTCCTGCAATCTTCATCTCCTGAACTTTCGTTTCATTAAGAGATGCAGCGCATGTATCACAAAAACCTTCGTGTTGCATTGTAACTTACACTTGT--------------TTTTCTGGTTTATGTTTATATAGAATTCCTGTGATAA-----TATCCTTCTCAT-CACTATATATCATTTCATTTATTCCTCATCAATTTTTTGGC--ACATGTCCATACACATTAATTGAATGC-CTGGTA-TTGT---ATA--TGAATGG-------AAGTATAGTAAGGAGGTCttaaagagatgttactaagtagcagattggtgcaacagacagttgcgtcatatcgcctcttaatcaattccttttccagtgtttattctcaaaagtagtacgctctagacagcaacttagttaccatcttctgtaaatactgatcagactttttttcttcttcttttcttttgtttgttcgtttcttattatatcatgcacttaaatgtgtaattgtctaatgatttaatttctttattgttcatgtaatctccaatgggaggaaataaagaaagaatg
gi|22 : GGTGGAAAACT-CGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC--AA-G-TTA----TCAGGACTGTTGACTCAA--
gi|2 : CATCTTCTGTAC-TTTTTC-CCCT-TCTCTC-----TTCTTTTGTTTATATT---ATGTAC-TTAA----ATG---T-GTAATTGTCTAATAATTTAATTTCTT----TA-T-TGTTCATGTAATCTCCA-ATGGGAGGA----AAAAAAGAAAGA
gi|5 : gtatcgcgggttatacagaaagaatcgtcttccttccactctttctacggattgtgaactttctggtgcgacttacgccaccaagcattttccagcctcagtactcttcaacactttattgcaaactatgcaattgggctttaccaaatatactaatctgacaatttgttgaagcttacttgacatcttttcgattcttctgaattctgacaaaagaagactccaattttttggccgattatgttgaggttggatttaccaaaaggtttctaccaaaaagattatttcttcacaccgacttttttcttataccaagtctcccgaactcaaaatactctttggctttatccatgacgtcattctctactcttcaagaccatagtaacctgccttcagcaccgtcgttactttactctacaagatgattacttctcttccaaatgcatcatggaaaacttgtgtcaaagccgcaatgaacacatctatcattttacactccgaacgtccagcgaatgctttcagcatacttcctttatacagttcaacactattacagcaggaagaccccacaagctaatatggaaatccttcgaacacctatgaaattgaaatttgcaaaatttattatcaatttatggactcttgtcgactctcctccaaaatcttgtctcctgtgtagcaacaattttgtgcaacattttccagcgcatctcaaccacctgtctaggaacagctgcttttcgagatgctctggtgggttacagtgatcggactacgatatcgtgcttagtggcttgaacttagcggtctctatcccaggacgtttatctttttttacttggtgctagatctatcacaacactattgctcaatttgacggacccggcctacatatttcttaatttccggtttttaagagatgtagcaagctttggtgcaaacgacagttggcgtcatgtcgcctctttaatatattctttttccagtgtttattctcaaaatgtaagaaacgctctagacagcaactttttaacCATGCAC-TTAA----ATG---T-GTAATTGT---CTAA-TGATTTAATTTCTTTA-T-TGTTCATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAAat
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCTTTTTCTACTATGTGCTAGAACACTCACAAAAACTATCACTCAATATGACAGACTCAGCTTGTATTATTCTTGACTTTTGCGTCTTTAAAGATGTTACATAAGAGCATGCCATTAATATTAAAACAGTTGTACCATATATGACTTGTAAACTACATCTTTTTTGTGTGTGTTTATTGTAATTAGGTAATTAGCCATCCACTGTATATGCTATATTTAGCTAGATTTATCATCTTCTGTAATTACTGTACACTACAGACTTCGTCTTTTTTCTTTTGTTTTATTCATTTCTTATTACAGAATGTGCGTTACTTGTAATGATAATTGTAATGGTCTCATAATTTAATTTCTTTGTTGTACATGCAATCTCCACTGGGAGGAAATAAAGAATGAATGA
Unaligned ( gi|12 ): GAACATCTTAACCCCATGACTGTTGCCTAACTTTATTATAAAATCGTCTAATTATTGGTTATTTATGGGAGCGAATTATGGATACGATCTTCGGGCAAAAGGTATACGTTTATTTAATATATTCCGGCCTTTCATCGCAAAACATGCTACGGGACTGCCCCAACACTCTTAAAAGCAGACAGGTGGCAAAAGCCTGTCTAGGATCCCGACCAGTTACAGCAGAGACGAATGCAAGAATTGCGCAGATTATGACCGTCGGCTGTGGAACGTCAACACAAGCGTA
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC
Unaligned ( gi|15 ): AATTCTAGCCTTGGCTTATGACATCTGTATTATTGCTCTCACATCCATGAAGAGCCCGACATAGCCTTAAGACAATCATATACATCTATTTAATACTCCGTGGACTCGCTGGCGTTTCCGGTAACTGCTGCAAAATTCAATGTTTTGTATTTTCACA
Unaligned ( gi|17 ): ATTGCTGTCACTCCACGAGAGCTCAAAAATGTGTACACAACATCTTTCAATACTCAGTACGCTAGTGGTTTACCTTTAATGTTGCAAAATCCAACGTTTTTATTTCATCAAAATGGTTGTAATCCCGCTGACACACTCAGCT
Unaligned ( gi|18 ): TAGTGGCTTCCAGTATCATTGGCTCCGACATGGAGGTTTATTTCACTTTTGTATTCTCGTATTCATAGACCGATCTTACTATCACACACATGTGAAATCATTCAATATTCAAAGCCTAACCCTACCTTGCCAGAATGATAT
Unaligned ( gi|19 ): ATTTTCTTCATTTCTCTTGTTTGCATTTATGTCTGGTGACACAGTGTTCAAATGTAATGTGTATGTATTAGTATGTTTTTCCATGTGTTTCCATATCTCCACATGGAGGAAATAAAGAAGGAATGA
Unaligned ( gi|20 ): GTCATTCCTCTACTCTTCAAATATAACCTCCTTCAGCACCTCTTACTTTATCTACAAGATGATTACTTTCCTCCAAAATGCATATGGAAAAC
Unaligned ( gi|23 ): TATCACTTGGCGTCCGACAGGGAGGTGTAATTTCCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 2 222222 6666666 22222 11 1111 111 1 3333333333333 222 111111 33333333333 111 111 1111111 1 1 1111 1111111 2222222222 11111 11111 1 4444444444444444444 11 11 111 11 1111111 1111 11 4444444444444444444 11 22 11 1111 1111 11 111 11111 2222 111 11 111111 1111 111111 22222222222222 333333333333 1111 11 11 1 111 1111 111 11 1111 11111 333333333333 111111 11111111 11111111 1111 333333333 22222 222222222222222222222222 222 11111111 1 44444444444 22222222222222222222222 666666666666666 1111 333333333 1 1 1 111 22222222222222 1 222 1 111 1111 333333333333 111111 111 11 1111111111 222 111 11 1 1 11 2222 22 11 222 1111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 33333 1111111 4444444444 11111 11 1
lowQualScore : 2 88 22 7 3 11 1 7 0 666666 1 1 1 1 1 1 11 1 1111111 88 7 1 88888 1 1 1 88 0 0 1111 4 1 5 777 6 1 0 11 2222222222222 888 6 8 88 777777 3 6 88888888888 6 6 999 6 6 888 77 7 555 5 0 5 7777777 5 1 1 5 8 5 1 1111 0 77 66 8888888 66 9999999999 5 22222 4 5 1 88 77 0 0 33333 77 1 2 1 4444444444444444444 11 0 00 99 444 3 8 11 1 8 7777777 2222 1 11 8 1111111111111111111 33 33 1 11 8 3 0 7777 1 1 7777 11 3 444 66 6 2 2 88888 6 5555 888 000 77 66 5 11 0 66 0 5 3 888888 1 0000 5 66 999 66 5 5 0 0 666666 5 44444444444444 3 33 8 99 8 3 555555555555 1 8 5555 99 3 6 6 99 3 1 6 11 6 0 444 6 99 6 6 5555 111 6 99 55 2 77 1 3333 99 6 44444 2 222222222222 111111 0 6 5 44444444 5 77 999 88888888 77 1 77 5 5 3 5 1 55 1 5 55 3333 3 5 000000000 888 33333 999999999999999999999999 1 5 111 5 88888888 1 22 77 1 77 5 00000000000 1 1 3 1 77777777777777777777777 99 888888888888888 5 8 0 1 8 7777 222222222 1 1 1 0 6 0 2 1 222 22 1 66666666666666 9 44 6 4444 1 3 2 111 333 1 1 2 77 5 7 1 99 6 9999 88 1 333 1 1 6 1 77 4444 444444444444 1 2 6 1 6 6 0 444444 1 222 77 8 4 3 99 22 9999999999 333 6 222 88 1 1 8 3 1 0 0 88 1 8 8 8888 3 22 1 11 1 111 1 8 1 6 4444 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 888 77777 6 8888888 99 2222222222 1 33333 11 4 6 11 8
lowQualScore : . .. .. . . .. . . . ...... . . . . . . .. . ....... .. . . ..... . . . .. . . .... . . . ... . . . .. ............. ... . . .. ...... . . ........... . . ... . . ... .. . ... . . . ....... . . . . . . . .... . .. .. ....... .. .......... . ..... . . . .. .. . . ..... .. . . . ................... .. . .. .. ... . . .. . . ....... .... . .. . ................... .. .. . .. . . . .... . . .... .. . ... .. . . . ..... . .... ... ... .. .. . .. . .. . . . ...... . .... . .. ... .. . . . . ...... . .............. . .. . .. . . ............ . . .... .. . . . .. . . . .. . . ... . .. . . .... ... . .. .. . .. . .... .. . ..... . ............ ...... . . . ........ . .. ... ........ .. . .. . . . . . .. . . .. .... . . ......... ... ..... ........................ . . ... . ........ . .. .. . .. . ........... . . . . ....................... .. ............... . . . . . .... ......... . . . . . . . . ... .. . .............. . .. . .... . . . ... ... . . . .. . . . .. . .... .. . ... . . . . .. .... ............ . . . . . . . ...... . ... .. . . . .. .. .......... ... . ... .. . . . . . . . .. . . . .... . .. . .. . ... . . . . .... . ................................................................................................................................................................................................................................................................................................. ... ..... . ....... .. .......... . ..... .. . . .. .
lowQualScore : 5 55 00 3 3 33 0 3 7 000000 0 0 0 0 0 0 33 0 7777777 00 3 0 77777 0 0 0 00 3 7 1111 3 0 7 999 6 4 3 77 5555555555555 000 7 0 66 666666 3 7 55555555555 7 7 888 7 7 333 33 3 000 0 7 7 3333333 7 0 4 7 9 7 0 0000 3 99 77 6666666 77 0000000000 7 99999 0 7 0 00 99 7 4 66666 99 7 1 0 5555555555555555555 00 8 88 00 888 2 0 00 0 0 0000000 0000 4 00 0 5555555555555555555 22 88 0 22 0 8 6 0000 0 0 2222 00 2 000 00 7 5 5 55555 7 8888 333 000 44 11 0 99 9 99 4 0 4 222222 0 2222 0 99 111 99 0 0 2 2 333333 7 44444444444444 8 88 0 00 0 8 000000000000 0 0 0000 00 2 7 7 22 7 7 7 00 0 8 000 4 22 7 7 2222 777 7 22 88 5 77 0 3333 22 3 33333 2 333333333333 555555 7 6 7 44444444 7 99 111 00000000 99 0 99 7 7 0 7 0 99 0 0 22 0000 1 0 666666666 888 00000 222222222222222222222222 0 7 999 7 44444444 7 00 99 4 99 7 77777777777 0 0 3 0 55555555555555555555555 33 444444444444444 4 0 6 4 0 0000 000000000 0 0 4 6 0 6 0 7 888 00 0 22222222222222 3 77 3 0000 0 3 2 333 000 0 0 5 77 5 3 0 22 7 3333 55 7 333 0 0 7 0 77 2222 222222222222 0 2 7 0 7 7 7 111111 7 666 99 7 0 0 22 55 2222222222 333 7 000 66 0 0 0 6 0 0 6 00 4 0 0 0000 2 00 4 22 4 666 4 0 0 7 4444 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333 55555 7 2222222 22 2222222222 0 88888 00 0 0 88 3
consensus : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGGT-TT--NTTTCA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---A-ACAT-TGGC-GTC-TTCA-GCAT---TCAAAGCTCAAACCCTAACCTTGGC-GGACGATATCTGTAT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAAT---GTTCT--AN-ACA-------AC-ATC--TTCCA--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTGAATAAATCCAAC--GTCCTTCATTTCCATCCAAAAAN-----GGT---------GCAAA--CAACACCGAC-AC-ATTAACA--TGGCACC-TAGGC--AAGAATGCTATTC-A---NT--CTTCCAA--GGAATACAAACA--TCT-TGGAATCTTAT--TGAACTCC-AA-T-TTGA-TCCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAA---ANCTTCTG-AACAGCCG---AACCC-AATC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGACG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-T-CGC-AAAACACGCTATGC-A--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TACTAA-N---TAT----CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AA-CA-TCGT-GGNTTT-ATCCANGAC-GTC-AT-C--CCCAT-AC-TCTGACAAAA---TA-C---AACCT------GC----ATC--C-----TGTTCTTA-CT-CATTA-TCT------ANAAGGTGGTTAC--TTCTCCTC--CAA-A----N-CGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTAT-AGACGT-CAGCGNATG-CTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNCCAACA--NCGNTCTGGAA---ANT-CCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAAA--TTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GAA-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTC-GTTTCNTTAAGAGATGT------AGC--GCATG----TANCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CA-CTTNT--------------TTTTCCGGTGTTTAT-GT--TT----A--TAA-T-AGA-ATCC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGTATATTAT--TC---CNC-TTNTC---CCTCNTCNTTT--CTTTTGTTT-A--CATTTC---------CA-----TG--------C---ACA----TTA---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
Reference ( family-1202 ) : CATGATCTATAATGTANNAGCTACATCACACCCGNAATATCGGATCGCACATGT-TGTAGNCNTTNATNAANGATNGTCACCCCNAAACAAGCACACTGTTCTCTGTCATTGTNGTCAACCAAATGANCNCTNACAGTGGTTTCCGGTATCA-CAAGGCGTCCGACANGGAGGT-TT--TTNTCA-CTTTCCTATAT-----------CTCGTATAT-CATAGA-CGAT-TTT-CTATATGA-GATNCAA-AATCTAAGTGTAC---A-ACAT-TGGC-GTC-TTCA-GCAT---TCAAGGCTCAAACCCNAACCTTGGC-GGACGATATCTGCNT----TATT-GCNCTCAC-TCC-ACAATGGGCTNCAAAAN---GTTCT--AN-ACA-------AN-ATC--TTCCA--T-ATTCC----ACGC-GNTGGCG-ATTT--ACGTTCAATGCTAAATAAATCCAAC--GTCCTTCATTTCNATCCAAAAAA-----GGT---------GCAAA--CAACACCGAC-GC-NTTGGCA--TGGCACC-TAGGC--AAGAANGCTATCC-A---NT--CTTCCAA--GNAATACAAACA--TCT-TGGAATCTT----TGAGCTCC-AA-T-TTGA-TCCCAGTAGCAAAA--CNCA-AA-TGCNTGCATGAAAG----GACGNCAGNCATAT-TTT--GCGCTTAA---ANCTTCTG-AACAGCCG---AACCC-AATC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ACGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGACG---ANAAG-AT----G-TTGAAG-ACCTCAGCACATTTCAACACTTCA-T-NGC-AAAACACGCTA-GC-A--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-CCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGCCG-NCTNTG--T-G--AGCTCG-A---TACCAA-N---TAT----CTCG--C--AAAACGNAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AA-CA-TCGT-GGNTTT-ATCCANGAC-GTC-AT-C--CCCAT-AC-TTTGACAAAA---TA-C---AACCT------GC----ATC--C-----TGTTNTTA-CT-CATTA-TCT------NNAAGGTGGTNNC--TTCTCCTC--CAA-A----T-CGNA-ATGGAAAANTTNTGTNAAAGCCNC------CGTA---A----TCGC-TTAACACTCCGA-----AGACG--CAGCGAATG-CTTTCAG-AT----ACTTC---------CTTTNTNCGATTCAACACTAT-TACAGCAGGAAGACCGCCAACA--CCGNTNTGGAA---ANT-CCNT---CGCAACATCNACGAGATTNNNNTNTGC-AAGTTTATTGTCAAT--TTATGGACCCTTNNNGACNCTCCNCCCGAAN-CTTGTCTCACTNT--GT-GCGA-AACCNTTTACA--AACGTNTTCNAGCACG-TNTC-NACCACCT----GTCC------------GGAAACGGCTNCTTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GAACTTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTNTTCNT-TTATCCTCGGTGCNAGGCACATG-ATCTCAG-A-C----TTGCCCGATT--ACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTC-GTTTCATTAAGAGATGC------AGC--GCATG----TATCA--------CAA-A-AAC------CTTCGTGTTGCAT------TGTAACTTA--CA-CTTGT--------------TTTTCTG--GTTTAT-GT--TT----A--TA--T-AGA-ATTC-CTGT-GATA----A-----TATCC--------TTCT---CATCCNCTGTACATCNT--TC---CNC-CTATC---CCTCATCAATT--CTTTNGCTT-A--CATNTC---------CA-----TG--------C---AC-----TTA---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TNTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAAAGA
gi|1 : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCCTA--------CATTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAAGGCGTTAGACAGGGAGGT-TT--TTATCAACCTTTCTATAT-----------TTAGTATATACATAGA-TGGT-TTG-CTACATGA-AATACAA-AATCT--GTGTACT--A-ATAT-GGGC-ATT-TTCA-GCATA--TCA---CTCAAATC---ACTT--GC-GGACAATATCTGCTG----CATT-ACACTTAC-TCC-A-AATGGGTTACAAAAT---AATCT--AC-ACA-------AA-AT-------A--T-ATTCA----AAGC-AATGGCG-ATTT--ACGCTCAATGC-AAATAATTTCAAT--GTCCTTCATTTCTACCCAAAAAG-----GG-----------CAAA--CAACACCGAC-AC-ATTAACA--TGGTACC-TAGGC--AAGAATGTTATTC-A---CT--CCTCCAA--GGAATATAAACA--TCT-TGGAATCTTAT--TGAACTCC-AAAT-TTGA-TCCCAGTAGCAGAA--CCCA-AAATGCCTGCATGAAAG----GACGCCAGACATGC-TTT--GCACTTAA---ATCTTCTG-AACAGCTG---AACCC-AATC----ACTGTC-T-CCAAGC---TATAC-AG-AATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGACG---AAAAG-AT----G-TTGAAA-ACCTCAGCGCATTTCAACAATTCA-T-AGC-AAAGCACACGATGC-A--TGGGCCTCCCCCA-GCA---AACT--AGATCGGACA-TGT-G--TGAAAGTTTAT-AAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTTTGAACG-TCTCTG--T-G--AGCTTG-A---TACTAA-C---TAT----CTCA--C--AAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCG--TAT-ATGAT-GAATC--CTGATATCA--AA-CA-TCGT-GGACTT-ATCCAGAAT-ATT-AT-A--CCCAT-A---TTGACAAAA---TA-C---AATCT------GT----ATC--C-----TGTTTTTA-CT-CATTA-TCT------TGAAAGCGGTGTC--TTCGTTTT--CAA-A----C-CAGA-ATGGAAAAGTTCGGTAAAACCCTC------CGTA---A----TCAC-TTACCACTCCGATTATAGGACAA-CAGCGCATG-GTTGCTG-AT----CCCGA---------CTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCACCAACA--TCGTTCTGGAAT--AGT-CCA----CGCAATATTGACGAGATTCTTCTTTGC-AAGTTTATTTTCAA-----ATGGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACTTT--GC-GCGA-AACCCTTTACA--AACGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCA-TGGTGGGGAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GAA-TTA----TCTGGACTGT---C-TCAAT--ACGA-CTTGTATTCAT-TTACCCCCGGTGCAAGGCACATG-ATCTCAG-A-C----TTACCTGATT--ACGATCTTCCAGCA--CTTCAT-CTCCTAAACTTTC-GTTTTA--------------------------------ATAA--------CAA-A----------TTTCGTGTTACAT------TGTAATTTA--CT-CTTGTTCATCTGTGCTTTGTTTTCTG--GCTTAT-GT--TC----A--TA--T-AGA-ATTC-CTGT-GATT----ATTATTTGTTT--------TTCT---CATCCACTATAT-TTAT--T-----TA-TTTTC---CCTCAT-GATT--ATTTTGC---A--CATTTC---------CA-----TA--------C---ACA----TTAATTAATGCAC--TGTATT-TGT---AT--AT--GA---A--T---TGTAT--A--TGTT--AATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|10 : TTCTTGACTTTT-GCGTCTTTAA-AGATGTTACATAAGA--GCATGCCATTAATA--------TTA-A-AAC------AGTTGTACCATATATGACTTGTAAACTA--CATCTTTT--------------TTGTGTGT-GTTTATTGTAATT----AGGTAATT-AGCCATCCACTGT--ATATGCTA-----TATTTAGCTAGATTTAT---CATCTTCTGTA-ATTAC--TG---TACACTA-CAGACTTCGTCTTTTTTCTTTTGTTTTATTCATTTCTTATTA---CAGAATGTG--------CGTTAC-----TTGT--AATGATAATTGTAAT-GGTCTCATA-ATTTAA---T--T---TCTTT--GT-TGTA--CATGCAATCTCCA-CTGGGAGGAAATAAAGAATGAATGA
gi|11 : tctttttctactatgtgctagaacactcacaaaaactatcactcaatatgacagactcagcttgtattaGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGGT-GTACTTTCCA-CATTCTTGTAC-----------CTCGTAT-T-CATAGA-CGAT-CTT-CTATTAGA-GATTCAA-AATCTAAGTTTA----A-ACAT-TGGA-GTC-TTCA-ATAT---TCAAAGCTCAAACCCTA-CCTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCC-ACGA-AAGCTCCAAAAA---GTTCT--AG-ACA-------AC-ATC--TTCCAT-T-ATTCC----ATGC-GCTGGCG-GTTT--ACCTTTAATGCTGCA-AAATCCAAC--GTTCTTTATTTTCAT-CAAAAAT-----GTT---------GTAAT--C-CCGCTGAA-ACTCTCAGC---TGGCGTC-TTGGTAAAAAAAAACTATCG-A---AT--CTTCCAA--TTCATACAATCA--TCT-TGGAA
gi|12 : G-AACATCTT---AACCC-CATG----ACTGTT-G-CCTAAC---TTTATTAT-AA-AA--TCGTCT--AATTA-TTGG---TT-ATTT--ATGGGA-GCG--AATT-A-T--GGAT-ACGATCTTCGGGC---AAAAG-GTATACG-TTTA-----TTTAATATATTCCGGCCTTTCA-T-CGC-AAAACATGCT-----A--CGGGACTGCCCCA-ACA---CTCTTAAAAGCAGACA-GGTGG--CAAAAGCCTGTCTAGG
gi|13 : TAAAAACTAT-TCACACTCGTAATATCGG----CACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACAT--TTCTC---CATTGTAGTTAACCA---GACCACTTATAGTGGCTTCCAGTATCA-T-TGGC-TCCGACATGGAGGT-TT--ATTTCA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGA-atcccgaccagttacagcagagacgaatgcaagaattgcgcagattatgaccgtcggctgtggaacgtcaacacaagcgta
gi|15 : attatAATTCTAGCCTTGGC-TTATGACATCTGTAT----TATT-GCTCTCACATCC-ATGAAGAGC-CCGACAT---AGCCTTAAG-ACAATCATATAC-ATCTATTTAA--T-ACTCCGTGGACTC-GCTGGCG--TTT--CCGGTAACTGCTGCA-AAATTCAAT--GTTTTGTATTTTCA
gi|16 : -AA-TGCATGCAGAAAAG----GACAACATTCACAG-TCT--GCTCTTAA---AA----TA-AACGGACA---AATCA-ATTCTGCGACTTTA-T-CCAAGT---TTTAT-AA-AT-GGC-TTATTC--T-TCC-TGGAA--TC-TTAT--ACGGAA-GCG--AACT-G-T--GG-T-GTGATATCAGACA---GAAAG-AT----G-Tca
gi|17 : ATT-GCTGTCAC-TCC-ACGA-GAGCTCAAAAAT---GTG-T--AC-ACA-------AC-ATC--TTTCAA-T-ACTCA----GTAC-GCTAGTG-GTTT--ACCTTTAATGTTGCA-AAATCCAAC--GT-TTTTATTTC-ATC--AAAAT-----GGT---------
gi|18 : AGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGT-TT--ATTTCA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGACCGAT-CTTACTAT-----------------------CAC---ACACATGTGAA-ATCATTCA-ATAT---TCAAAGC-CTAACCCT-ACCTTGCCAGAATGATATtgtaatcccgctgacacactcagct
gi|19 : tTCTTCATTT--CTCTTGTTT-G--CATTT-----------A-----TGTCTGGTGAC---ACAGTGTTCA---AATG-----T--AATGTGT---ATGTAT--TA---G--TATGTTTTTCCATGTGTTTCCAT---ATCTCCACATGG-AGGAAATAAAGAAGGAATGA
gi|2 : atttGT---TATAC-AG-AA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACT-T-TCTGG-T-GCGACTTACGCCA---CCAAGCAT----T-TTCCAG--CCTCAGTACTCTTCAACACTTTA-T-TGC-AAA-----CTATGC-AATTGGGCTTTACCAA-ATA---TACT--A-ATCTGACAATTT-G--TTGAAGCTTAC-TTGACATC--TTT-TCGATTC---TT-CTG--A-ATTCTGACAA--AAGA---AGA--CT--CCAATTTTTTGGCCG-ATTATG--TTG--AGGTTG-GATTTACCAA-AAGGTTT----CTAC--C--AAAAAGATT-ATTTC--TTCACACC-GACTTT--TTTCT--TAT-ACCAA-GTCTC--CCGAACTCA--AAATACTCTTTGGCTTT-ATCCATGAC-GTC-AT-T--CTC-T-AC-TCTT-CAAGACCATAGT---AACCT------GC----CTT--CAGCACCGTCGTTA-CT---TTACTCT------ACAAGATGATTAC--TTCTCTTC--CAA-A----TGCATC-ATGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTA----TCAT-TTTACACTCCGA-----A--CGTCCAGCGAATG-CTTTCAGCAT----ACTTC---------CTTTATACAGTTCAACACTAT-TACAGCAGGAAGACC-CC-ACAAGCTAATATGGAA---A-T-CCTT---CG-AACACCTATGAAATTGAAATTTGCAAAATTTATTATCAAT--TTATGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GTAGCAACAATTTTGTGC---AACATTTTCCAGCGCA-TCTC-AACCACCT----GTCT------------AGGAACAGCTGCTTTTC-GAGA-TGCTCTGGTGGGTTACAG----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGAACTTAGCGGTCT---CTAT---C-CCAGG--ACG--TTTATCTTTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAACA-CTA--TTGCTCAATTTGACGGAC--CCGGC---CTACATATTTCTTAATTTCCGGTTT--TTAAGAGATGT------AGCAAGC-TT----TGGTG--------CAA-ACGACAGTTGGCGTCATGTCGCCTC-----TTTAA--TA--TA--TTCT--------------TTTTCCAGTGTTTAT--T--CTCAAAA--TG--TAAGA-AACG-CTCTAGACA----G-----CAACT--------TTTTAACCATCTTCTGTAC-TTTT--TC---C-C-CT-TC---TCTC-----TT--CTTTTGTTT-A--TATT------------A-----TG--------T---AC-----TTA---AATG-----TGTAAT-TGT---CTA-AT--AATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAAAAAAGAAAGAA
gi|20 : gtatcgcgg-GTC-AT-T--CCTCT-AC-TCT--TCAAA---TA-T---AACCTCCTTCAGC----ACC-----------TCTTA-CT---TTA-TCT------ACAAGATGATTAC--TT-TCCTC--CAA-A----A-TGCATATGGAAAAt
gi|21 : -AG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CC-A-T--G--T-GCGACCTCTCATT----CAAG-ATA---G-TTGAAA-AATTCAGCGCAc
gi|22 : GGTGGAAAACTCGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC---AAGTTA----TCAGGACTGTTGAC-TCAA
gi|23 : TATCA-CTTGGCGTCCGACAGGGAGGT-GTAATTTCCA-C
gi|3 : GGTTTCCGGTATCAACAAGGCGTCCGACAGGGAGGG-TG--AT---A-CTTTCCTACATTCTTGCTAATCCTCGTAT-T-CATAGA-CGATCTTT-CTATTAGATGATTCAA-AATCTAAGT-TA----A-ACAT-TGGGAGTC-TTCA-CTAT---TCAAAGC-CAAACCCTA-CCTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCCTACGA-AAGCTCCAAAAA---GTTCT--AG-ACA-------AC-ATC--TTCCAT-T-ATTCC----ATGC-GCTGGCG-ATTTAAACCTTTAATGTGCAAT-ATTTCATC--GTCTTCTATTTC-ATCTAAAAAATGTTTGGTATATTCCCCGCTAA--AAACACTCAT-GC-CCTGGCGTCTGGTA----AAAA--AAAAAAACTATCCGA---AT--CTTCCAATTTCAATACTATCAACTTT-TGAATTCTT----TAAACTCT-AA-T-TTGA--CCCAGGAAAAAAA--CATATAA-TGCTTGTATGAAAGGACTGACGACAGCAATAT-TTTAAGCTCTTAA---AAGTCCGG-A--AGCCACTTAAGCC-AACCATA-ACTGCCGTGCCAAACCTTTATA--AA-AG-AG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATT-ACT--GG-T-GCGA-ATACGTCGGGCAAAAG-A-----A-T--AGG-CCCTTAACACATTCCA----TTCATT-CACGAAAACATGCTA-GC-----GGGACTGCTCCA-ACAGCCAACTA-AGACAGAACA-TGT-GCCTGAAAGCCT-C-TAGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GACA--TAAAAGATA-A--CTGACAAATTCCCTGGCCGTCCTCTG--C-GAAAACTCA-G---CACAAC-G---TAGAAAATTTG--CAAAAAACGTAT-ATTCA--TC-AT-TC-T-CTGT--TTCCTACTGT-TCAAT--AGTG--CCACTACTAACAA-CA-CTAT-GGGTTT-ATTCAAGAC-ATCGAT-C--CCCAT-ACTTTTGAC--CA---TA-----GACCT------GC----ATC--A-----TGTT
gi|4 : gtgATACAATAATCT--GTGTACCGAA-ATAT-TGGC-ATT-TTCATGCATAAATCAAG-CTCAA-TCCGAAACT--GC-GGACG-T-TCTTC-T----TATTTGCGCTTACCTCC-ATAATGGGCTACAAAAGATAGCTCT--AACACA-------AATATA--TAACGATT-ATTCC----AAGCAGATGGCGTATTT--ACGTTCAATGCTAAATAAATCCAACATGTCC-TCA-TTCTATCCAAAAAG-----GGT----------CAAAACCAACA-CGACTAC-ATTGA-A--TGGCACCTTAGGC--AAGAATGTTGTTC-AGACGTCGCTCCCAA--GGAATACACACA--TCTATGGAATCTTATTGTGAGCTCCAAA-TATTGATTCCCAGTAGCAAAAATCTCA-AA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTT--TCGCTAGAAACATCTTCTGTAACA-CTGA--AACCCAAATC----ACTGTC-T-CCAAGC---TATAC-AA-AA-AG--TTGTCC--TACTCATC-A---TA-CTGT--A-GGAA-GCG--AACTGG-T--GC-TGGCGACCTACGACG---AC-AG-AT----ACTTGAAGAACCTCCTCACATTTCAACACTTCA-TCAGC-AAAACAC---A-ACAA--TGAGCCTCCCCCACGCA---AACA--AGATCGGACA-TGT-G--TGAAAG-TTAT-TAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATTTAAGA---A-A--CTA-TCAATTTGTTGGACG-CCTTTGGTT-G--AGCTAGAA---TACTAATT---TAT----CTCAACC--AAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGG--TATAACGA--GAATT--CCTGAATCA--AA-CA-TCGT-GGATTTCATCCAAGAC-AT--AT-C--CCTATAAC---TGA-AAAA---TCTC---AGCCT------GTAATGATA--C-----TGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCCTCTGCAACAGTCCC-CAAA-GTGGAAAGGTTCTG--AGAGGCAC------CGTA---A----CTGC-TTGACACTtatcatctt
gi|5 : --C--AAAAAG-AT-ATTTC--TT-CA-CC-GACTTT--TTTCT--TAT-AT--C-CAATCTTCCGAACTCA--AA-CA-TCTT-GGCTTT-ATCCATGAC-GTC-AT-T--CCTCT-AC-TCT--TCAAA---TA-T---AACCT------CC----ATCAGC-----ACCTCTTA-CT-C--TA-CCT------ACAATATGGTTAC--TT-TCCTC--CAA-A----A-TGCATATGGAAAACTTGTGTTAAAGCTTT------CAT--------------TTA-CACTC--G-----AGACGT-CAGCAAATG-CTTTCAG-AT----ACTTC---------CTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCCCACAA--GCTATATGGAA---AATCCCTT---CG-AACATCCATGAAATTGAAATTTGT-AAATTTATTATCAAA--TTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GT-G-GC-AACAATTT-CGTCAACACTTTCCAGCACA-TCTC-AACCACCT----GTCT------------AGAAACAGCTGCTTTTC-GAGA-TGCT-TGGTGGGATACGG----TGATT---GA--CTACGATATCGTGCTTAGTGCT--GAACTTA-----GTGGTCTCTATCC-TCAGG--ACG--TTTATCTCTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAA-A-CGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGAT-ATTCTTAACTTCC-GTTTTTTAAAGAGATGT------TAC---TAAG----TAGCAGATTGGTGCAACA-GAC------AGTTGCGTCATAT------CGCCTCTTAATCA-ATTCC--------------TTTTCCAGTGTTTAT-TC--TC----A--AAAGT-AGT-ACGCTCTA--GACA----G-----CAACTTAG-----TTAC---CATCTTCTGTAAATACTGATCAGACTT-TTTTT---CTTCTTCTTTT--CTTTTGTTT-GTTCGTTTCTTATTATATCA-----TG--------C---AC-----TTA---AATG-----TGTAAT-TGT---CTA-AT--GATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAA
gi|6 : ttacCGAACA-TGT-G--TGAACGTTTAT-TAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTT-GGACG-TCTCTG--T-G--AGCTTG-A---TACTAA-C---TATAT--CTCA--C--AAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCG--TAT-GTGAT-GAATC--CTGATATCA--AA-CA-TCGT-GGATT--ATTCAGGACTATT-ATAT--CCCAT-A---TTGACAAAA---TA-C---ATCTT------GT----ATT--C-----TGTTTTTA-CT-CATTA-TCT------CGAAAGTGGTGTC--TTCTCTTC--CAA-A----T-CAGA-ATGGAAGAGGCCTGTAAAATCCTC------CGTA---A----TCAC-TTACCACTCCGATTAT-AGAAAA-CAGCGCATG-GCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCACCAACA--TCGTTCTGGAAT--ATT-CCA----CGCAATAATAACGAGATTCTTCTGTGC-AAGTTTATTGTCAAA--TTATGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACTTT--GC-GC-A-AACCCTTTACA--AATGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCT-TGGTGGAAAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC--GA---------------CTGT---C-TCAAT--ACGA-CTTGTACTCAT-TTATCCTCGGTGCAAGGCACATG-ATATCAG-A-C----TTACCCGATC--ACGATCTTCCAGCA--CTTCAT-CTCTTAAACTTTC-GTtg
gi|7 : ctaCATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCATTGTCATCAA----ATGAGCTCTGAC--TGGATTCCAGATTCC-CAAGGCGTTAGACATGGAGGTGTT--TTGTCAACCTTTCTATAT-----------TTAGTATATACATAGA-CGGA-TTG-CTACATGA-AATACAA-AATCT--GTGTACG--A-ATAT-TGGC-ATT-TTCA-GCAT---TTCAAGCTCAAATCCAACACTTG-C-GGACGATATTTGTTTGCTGTATT-CCACTTAC-TCA-A-AATGGGCTACAAAAT---ATTCT--AC-ACA-------AA-ATA--TACGA--TTATTCA----ACGC-AATGGCG-ATTT--ACGTTCAATGC-AAATAAATCCAAT--GTCCTTCATTTCAATCCAAAAAA-----GG----------GCAAA--CAACACCGAC-AC-ATTAACA--TGGCACC-TAGGC--AAGAATGCTATTC-A---CT--CCTCCAA--GGAATATAAACA--TCT-TGGAATCT-----------------T-TTGA-TCCCAGTAGCAGAAT-CTC---------------AAAG----GACGCCAGGCA-----TT--GTGCTTAA---ACCTTCTG-AA-AGCTG---AACCT-AATC----ACTGTC-T-CCAAGC---TATAC-AGAAA-AG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACT-G-C--GG-T-GCGACCTACGA
gi|8 : aagtttgacaccgtatggagaG--A-AATA-GACAA--AAGA---A-AAACT--CCTATTTTTTGACCG-ATTATG--G-G--AATTGG-A---CACCAA-A---ACT----CTTG--A--AAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCT--TAT-A-GACAGTCTC--TCTAGATCA--AA-CA-CTTT-GTCTTC-ATACATGAC-GTC-AT-CACTCTAC-AC-TTC----AAG---TA-TTTTAAACT------CC----ATCAGC-----ACATCCCA-CT-C--TA-TCT------ATAACATGGTTAC--TT-TCCTC--CAA-A-----------ATGGAAAATTTCAGTCAAAGCAGC------AATA---ACAGTTTGCATTTACACTC--A-----AAACGT-CAG---ATCTCTCTCAG-AT----ACTTC---------GTTTCTCCAATTCAATACTAT-TACAGCAGGAAGACCCTTGTAA--GCTATCTGGGA---AAT-CCAC---TCTAGCATCCATGAAATAGATTTGT-T-AAATTTATTACCAAA--TTGTGGGTTTTTCCTTACTCTTCTTCAGAAT-CTTGTCTCA-TGT--GT-GGTA-AACAATTCATG--AACATTTT-TAGCACA-CCTCGCAACACTCAAAAATCCACACAAACCAGTAGGAACAATTGCTTTTTGGAAA-TGCT-TGAT-GGAAACAT----TTATT---TA--CTATGATATTTTGCTT
gi|9 : tttcttctCGCCAACA--CCGCTCTGGAAGCAACT-CCACTCACACAATAT-GA-GAGATCTTCCTGGGCTAAGTC-ATTGGTAATAATTATGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATC-C-CTACCT----GTCC------------GGAAACGGCTCTCTTTC-GTGAACGCC-TGG---GGAACCA----TTAGTGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGATTA----TCTGGACTAT---CCTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAG-AAC----TTGCC-GATT--ATGATCTTCCTGCAATCTTCAT-CTCCTGAACTTTC-GTTTCATTAAGAGATGC------AGC--GCATG----TATCA--------CAA-A-AAC------CTTCGTGTTGCAT------TGTAACTTA--CA-CTTGT--------------TTTTCTG--GTTTAT-GT--TT----A--TA--T-AGA-ATTC-CTGT-GATA----A-----TATCC--------TTCT---CAT-CACTATATATCAT--TT---CAT-TTATT---CCTCATCAATT--TTTTGGC---A--CATGTC---------CA-----TA--------C---ACATTAATTG---AATGCC---TGGTAT-TGT---AT--AT--GA---A--T---atgtcttgaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC
Alignments
lowQualScore : 11 1 222222 333333 222222 11 1111 1111111 1 111 3333 111 111 111 1111 1 1 111111 1111111 22222222222 11111 1 44444444444444444444 1111 11 33333 1111 11 11 11 222222222222222222 11 22 11 1111 1111 11 22222 11111 2222 111 11 111111 22222222 22222222222222 2222222 1111 11 11 1 111 1111 111 11 1111 11111 1111 2222222222 111111 11111111 11111111 1111 2222222222222 2222 2222222222222222222222 222 11111111 1 333333333333 22222222222222222222222 1 444444 1111 333333333 2 1 222 33333333 1 111 1 11 11 1111 333333333333 111111 111 222222222222222222 222 111 11 1 11 2222 22 11 222 111 1 9999999999999999999999999999999999999999999999999 333333 11111 44444444444444 111 11111 3333333333 1111 55555555555555555555555 111 11111 2222222 111 11 2222222 77777777777777777777777777777777777777777777777777777777 1111111 4444444444 11111 11 1
lowQualScore : 1 88 7 3 0 7 666666 1 888888 6 6 7 0 3 555555 88 0 0 1111 4 0 8888888 1 66 8888 3 0 77 7 6 777 6 8 88 99 99 6 99 1111 111 2 6 888 3 7 333 5 5 0 5 3 4444 5 1 1 5 8 5 0 666666 77 66 8888888 5 99999999999 5 22222 4 5 0 88 77 0 0 8888 2 77 1 3 8 1 55555555555555555555 0000 6 6 99 5 44 11111 1 8 5555 11 11 1 11 8 999999999999999999 33 33 1 11 8 3 0 7777 1 6666 11 3 00000 6 2 2 11111 6 6 5555 888 000 77 66 5 11 0 66 0 5 3 888888 1 66 0 5 66 999 66 5 5 0 0 22222222 5 44444444444444 0 3 33 8 8 8 3 22 8888888 1 8 5555 99 3 6 6 99 3 1 6 11 6 0 444 6 99 6 6 5555 111 6 99 55 1 77 1 3333 99 6 44444 4444 2222222222 111111 0 6 5 44444444 5 77 999 88888888 77 1 77 2222 3 1 55 1 5 55 66 6 9999999999999 888 3333 9999999999999999999999 1 5 111 5 77777777 1 77 1 77 444444444444 1 3 1 77777777777777777777777 1 0 555555 99 3 8 0 1 8 7777 222222222 1 1 1 0 0 0 1 6 6 1 22 555 7 22222222 44 6 4444 1 3 0 222 22 1 1 2 77 5 7 99 77 9999 00 1 55 1 1 6 1 6 4444 444444444444 1 1 6 1 6 6 0 444444 1 222 77 8 4 3 555555555555555555 333 6 222 88 3 1 8 3 1 0 0 88 1 8 8 8888 3 55 1 11 1 111 1 8 1 222 0 3333333333333333333333333333333333333333333333333 111111 8 55555 1 77777777777777 888 66666 5555555555 99 0000 88 99999999999999999999999 1 444 55 66666 2222222 1 444 3 00 99 3333333 99999999999999999999999999999999999999999999999999999999 6 8888888 99 2222222222 33333 11 4 6 11
lowQualScore : . .. . . . . ...... . ...... . . . . . ...... .. . . .... . . ....... . .. .... . . .. . . ... . . .. .. .. . .. .... ... . . ... . . ... . . . . . .... . . . . . . . ...... .. .. ....... . ........... . ..... . . . .. .. . . .... . .. . . . . .................... .... . . .. . .. ..... . . .... .. .. . .. . .................. .. .. . .. . . . .... . .... .. . ..... . . . ..... . . .... ... ... .. .. . .. . .. . . . ...... . .. . . .. ... .. . . . . ........ . .............. . . .. . . . . .. ....... . . .... .. . . . .. . . . .. . . ... . .. . . .... ... . .. .. . .. . .... .. . ..... .... .......... ...... . . . ........ . .. ... ........ .. . .. .... . . .. . . .. .. . ............. ... .... ...................... . . ... . ........ . .. . .. ............ . . . ....................... . . ...... .. . . . . . .... ......... . . . . . . . . . . .. ... . ........ .. . .... . . . ... .. . . . .. . . .. .. .... .. . .. . . . . . .... ............ . . . . . . . ...... . ... .. . . . .................. ... . ... .. . . . . . . . .. . . . .... . .. . .. . ... . . . ... . ................................................. ...... . ..... . .............. ... ..... .......... .. .... .. ....................... . ... .. ..... ....... . ... . .. .. ....... ........................................................ . ....... .. .......... ..... .. . . ..
lowQualScore : 0 55 3 3 7 3 000000 0 333333 7 7 3 7 7 333333 00 3 7 1111 3 7 6666666 3 77 3333 3 3 77 3 7 777 7 0 66 88 44 7 22 7777 333 2 7 333 2 3 444 7 0 7 7 7 2222 7 9 4 7 9 7 7 111111 99 77 6666666 7 00000000000 7 99999 0 7 7 00 99 7 4 9999 0 99 7 6 9 0 00000000000000000000 7777 3 7 88 6 00 00000 4 0 0000 00 00 4 00 0 000000000000000000 22 88 2 22 0 2 6 0000 0 8888 00 2 00000 7 5 5 88888 7 7 8888 333 000 44 11 0 99 9 99 4 0 4 222222 0 99 9 0 99 111 99 0 0 2 2 77777777 7 44444444444444 7 8 88 0 0 0 8 88 0000000 0 0 0000 00 2 7 7 22 7 7 7 00 0 8 000 4 22 7 7 2222 777 7 22 88 0 77 0 3333 22 3 33333 2222 8888888888 555555 7 6 7 44444444 7 99 111 00000000 99 0 99 1111 0 0 99 0 0 22 11 1 8888888888888 888 0000 2222222222222222222222 7 7 999 7 77777777 7 99 4 99 333333333333 0 3 0 55555555555555555555555 0 0 222222 44 8 0 6 4 0 0000 000000000 0 4 4 6 0 6 0 7 7 0 00 000 5 55555555 77 3 0000 0 3 3 777 00 0 0 5 77 5 3 22 33 3333 00 7 88 0 0 7 0 7 2222 222222222222 0 0 7 0 7 7 7 111111 7 666 99 7 0 0 222222222222222222 333 7 000 66 2 0 0 8 4 0 6 00 4 0 0 0000 2 44 4 22 4 666 4 0 0 888 0 8888888888888888888888888888888888888888888888888 000000 2 44444 0 00000000000000 666 00000 0000000000 00 6666 88 88888888888888888888888 0 000 22 44444 8888888 0 000 3 88 22 3333333 77777777777777777777777777777777777777777777777777777777 7 2222222 22 2222222222 88888 00 0 0 88
consensus : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGG-------TTT-ATT-T--CA-CTTTT-CTATATC-TCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-T---------GCAAA--CAACGCCGAC-AC-ATTAACATGGCGCCT-AGGCAA---AAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACA----TTA-TT--AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
Reference ( family-1202 ) : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGG-------TTT-NTT-T--CA-CTTTT-CTATATC-TCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTCTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTAT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GTTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-T---------GCAAA--CAACACCGAC-AC-ATTAACATGGCACCT-AGGC-----AAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAA-T-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAANC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCNTTAAGAGATGT------AGC--GCATG----TANCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TTA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTNTC---CCTCNTCNTTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACA----TTA-----AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
gi|1 : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCCTA------CA--TTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAAGGCGTTAGACAGGGAGG-------TTT-TTA-T--CAACCTTT-CTATATT-TAGTATATACATAGA-TGGT-TTG-CTACATGA-AATACAA-AATCT--GTGTACT--AATATGGGC-ATTTTCA-GCATA--TCA---CTCAAATC---AC-TT--GC-GGACAATATCTGCTG----CATT-ACACTTAC-TCC-A-AATGGGTTACAAAA--T-AATCT--AC-ACA-------A-AAT--------A--T-ATTCA----AAGC-AATGGCG-ATTT--ACGCTCAATGC-A-AATAATTTCAAT--GTCCTTCATTTCTACCCAAAAA-----GGG------------CAAA--CAACACCGAC-AC-ATTAACATGGTACCT-AGGC-----AAGAATGTTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CCCA-AAATGCCTGCATGAAAG----GACGCCAGACATGC-TTT--GCACTTAAATC---TTCTG-AACAGCTG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAA-ACCTCAGCGCATTTCAACAATTCA-TA-GC-AAAGCACACGATGCA--TGGGCCTCCCCCA-GCA---AACT--AGATCGGACA-TGT-G--TGAAAGTTTAT-AAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTTTGAACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TAT--CTCA--C--AAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCG--TAT-ATGAT-GAATC--CTGATATCA--AACAT----CGTGGACTT-ATCCAGAAT-ATT-AT-ACCCATA---TTGACA----AA---ATA---CAATCT------GT----ATC-----CTGTTTTTA-CT-CATTA-TCT------TGAAAGCGGT--GTCTTCGTTTT--CAA-A----CCAGA-ATGGAAAAGTTCGGTAAAACCCTC------CGTA---A----TCAC-TTACCACTCCGATTATAGGACAA-CAGCGCAT-GGTTGCTG-AT----CCCGA---------CTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--AGTCCA----CGCAATATTGACGAGATTCTTCTTTGC-AAGTTTATTTTCAA-----ATGGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACTTT--GC-GCGA-AACCCTTTACA--AACGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCA-TGGTGGGGAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GA-A-TTA----TCTGGACTGT---C-TCAAT--ACGA-CTTGTATTCAT-TTACCCCCGGTGCAAGGCACATG-ATCTCAG-A-C----TTACCTGATT--ACGATCTTCCAGCA--CTTCAT-CTCCTAAACTTTCGTT---TTAA------T------A-----------------A--------CAA-A----------TTTCGTGTTACAT------TGTAATTTA--CTCTTGTTCATCTGTGCTTTGTTTTCTG---GCTTAT-GT--TCA--T-A-T---AGA-AT-TC-CTGT-GATT----ATTATTTGTTT--------TTCT---CATCCACTAT--AT-TTATT-----TATTTTC---CCTCATGA-TT--ATTTTG--C-A--CATTTC---------C---------ATA--------CACA----TTAATT--AATGCAC--TGTATT-TGT---AT--AT--GA---A--T---TGTAT--A--TGTT--AATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|10 : TTCTTGACTTTTGCGTCTTTAA-AGATGTTACATAAGA--GCATGCCATTAATA--------TTA-A-AAC------AGTTGTACCATATATGACTTGTAAACTA--CA-TCTT--------------TTTTGTGTGTGTTTATTGTAATTAGGTAA-TT--AGCCAT-CCACTGT--ATATGCTA-----TATTTAGCTAGATTTAT---CATCTTCTGT--A-ATTACTG---TACACTACAGACTTCGTCTTTTTTCTTTTGTTTTATTCATTTC---------TTATTACAGAATG--------TGCG----TTACTTGTAATGATAATTGTAAT-GGTCTCATA-ATTTAA---T--T---TCTTT--GT-TGTA--CATGCAATCTCCA-CTGGGAGGAAATAAAGAATGAATGA
gi|11 : tctttttctactatgtgctagaacactcacaaaaactatcactcaatatgacagactcagcttgtattaGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGG-------TGT-ACT-TTCCA-CATTC-TTGTACC-TCGTAT-T-CATAGA-CGAT-CTT-CTATTAGA-GATTCAA-AATCTAAGTTTA----AACATTGGA-GTCTTCA-ATAT---TCAAAGCTCAAACCCT-AC-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCC-ACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-GTTT--ACCTTTAATGCTG-CA-AAATCCAAC--GTTCTTTATTTTCAT-CAAAAA-----TGT-T---------GTAAT--C-CCGCTGAA-ACTCTCAGC-TGGCGTCT-TGGTAA---AAAAAAACTATCG-AA---TC--TTCCAA--TTCATACAATCA--TCT-TGGAA
gi|12 : G-AACATCTT---AA-CCCCA-TG----ACTGTT-G-CCTAAC---TTTATTAT-AA-AA--TCGTCT--AATTA-TTGG---TT-ATTT--ATGGGA-GCG--AATT-A-T--GGAT-ACGATCTTCGG--GC---AAAAG-GTATACG-TTTA-----TTTAATATATTCCGGCCTTTCA-TC-GC-AAAACATGCT----A--CGGGACTGCCCCA-ACA---CTCTTAAAAGCAGACA-GGTGG--CAAAAGCCTGTCTAGG
gi|13 : TAAAAACTAT-TCACACTCGTAATATCGG----CACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACATT--TCTC---CATTGTAGTTAACCA-G--ACCACTTATAGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGG-------TTT-ATT-T--CA-CTTTT-GTAT-TC-TCGTAT-T-CATAGA-atcccgaccagttacagcagagacgaatgcaagaattgcgcagattatgaccgtcggctgtggaacgtcaacacaagcgta
gi|15 : attatAATTCTAGC-CTTGGC-TTATGACATCTGTAT----TATT-GCTCTCACATCC-ATGAAGAGC-CCGACA--T-AGCCTTAAG-ACAATCATATA-CATCTATTTA-A--T-ACTCCGTGGACTC-GCTGGCG--TTT--CCGGTAACTGCTG-CA-AAATTCAAT--GTTTTGTATTTTCA
gi|16 : -AA-TGCATGCAGAAAAG----GACAACATTCACAG-TCT--GCTCTTAAAA-------TA-AACGGACA---AA-TCAAT-TCTGCGACTTTA-T-CCAAGT---TTTAT-AA-AT-GGC-TTATTC--T-TCC-TGGAA--TC-TTAT--ACGGAA-GCG--AACT-G-T--GG-T-GTGATATCAGA--CA---GAAAG-AT----G-Tca
gi|17 : ATT-GCTGTCAC-TCC-ACGA-GAGCTCAAAAA--T-G-TGT--AC-ACA-------A-CATC--TTTCAA--T-ACTCA----GTAC-GCTAGTG-GTTT--ACCTTTAATGTTG-CA-AAATCCAAC--GT-TTTTATTT-CATC--AAAA-----TGGTT---------GTAAT--C-CCGCTGAC-AC-ACT
gi|18 : AGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGG-------TTT-ATT-T--CA-CTTTT-GTAT-TC-TCGTAT-T-CATAGACCGAT-CTTACTATC--A-CACACA------T--GTG-AA---ATCA---------TTCA-ATAT---TCAAAGC-CTAACCCT-AC-CTTGCCAGAATGATATcagct
gi|19 : tTCTTCATTT--CTCTTGTTT-G--CATTT--------------------ATGTCTGGTGACACAGTGTTCA-----AATG-----T--AATGTGT---ATGTAT--TA---G--TATGTTTTTCCATGTGTTTCCAT---ATCTCCACATGG-AGGAAATAAAGAAGGAATGA
gi|2 : atttGT---TATAC-AG-AA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACT-T-TCTGG-T-GCGACTTACGC--CA---CCAAGCAT----T-TTCCAG--CCTCAGTACTCTTCAACACTTTA-TT-GC-AAA-----CTATGCAATTGGGCTTTACCAA-ATA---TACT--A-ATCTGACAATTT-G--TTGAAGCTTAC-TTGACATC--TTT-TCGATTC---TT-CTG--A-ATTCTGACAA--AAGA---AGA--CT--CCAATTTTTTGGCCG-ATTATG--TTG--AGGTTG-GATTTAC----CAA-AAGGTTT--CTAC--C--AAAAAGATT-ATTTC--TTCACACC-GACTTT--TTTCT--TAT-ACCAA-GTCTC--CCGAACTCA--AA-ATACTCTTTGGCTTT-ATCCATGAC-GTC-AT-TCTC-TAC-TCTT-CA----AGACCATAG--TAACCT------GC----CTTCAGCACCGTCGTTA-CT---TTACTCT------ACAAGATGAT--TACTTCTCTTC--CAA-AT---GCATC-ATGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTA----TCAT-TTTACACTCCGA-------ACGTCCAGCGAAT-GCTTTCAGCAT----ACTTC---------CTTTATACAGTTCAACACTAT-TACAGCAGGAAGACCCCACAA-GCTAATATGGAA---A-TCCTT---CG-AACACCTATGAAATTGAAATTTGCAAAATTTATTATCAA--TTTATGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GTAGCAACAA--TTTTGTGC-AACATTTTCCAGCGCA-TCTC-AACCACCT----GTCT------------AGGAACAGCTGCTTTTC-GAGA-TGCTCTGGTGGGTTACAG----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGA-ACTTAGCGGTCT---CTAT---C-CCAGG--ACG--TTTATCTTTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAACA-CTA--TTGCTCAATTTGACGGAC--CCGGC---CTACATATTTCTTAATTTCCGGTT-TTTAAGAGATGT------AGCAAGC-TT----TGGTG--------CAA-ACGACAGTTGGCGTCATGTCGCCTC-----TTTAA--TA--TA-TTCT--------------TTTTCCA-GTGTTTAT-TC--TCA--AAA-TGTAAGA-AA-CG-CTCTAGACA----G-----CAACT--------TTTTAACCATCTTCTGT--AC-TTTTTC---CCCTTCTC---TC-------TT--CTTTTGTTT-A--TATT---------------------ATG--------TAC-----TTA-----AATG-----TGTAAT-TGT---CTA-AT--AATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAAAAAAGAAAGAAT
gi|20 : gtatcgcgg-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCTCCTTCAGC----ACC---------TCTTA-CT---TTA-TCT------ACAAGATGAT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAA
gi|21 : -AG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CC-A-T--G--T-GCGACCTCTCATTC------AAG-ATA---G-TTGAAA-AATTCAGCGCAc
gi|22 : GGTGGAAAACTCGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC--AA-G-TTA----TCAGGACTGTTGAC-TCAA
gi|23 : TATCA-CTTGGCGTCCGACAGGGAGG-------TGTAATT-T--C
gi|3 : GGTTTCCGGTATCAACAAGGCGTCCGACAGGGAGGGTGATACTTT-CCT-A--CA-TTCTTGCTA-ATCCTCGTAT-T-CATAGA-CGATCTTT-CTATTAGATGATTCAA-AATCT--AAGTTA---AACATTGGGAGTCTTCA-CTAT---TCAAAGC-CAAACCCTA-C-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCCTACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-ATTTAAACCTTTAATG-TGCAAT-ATTTCATC--GTCTTCTATTT-CATCTAAAAAATGTTTGG-TATATTCCCCGCTAA--AAACACTCAT-GC------CCTGGCGTCT--GGTAAAAAAAAAAAACTATCCGAA---TC--TTCCAATTTCAATACTATCAACTTT-TGAATTCT--TTA--AACTCTAA-T-TTGA--CCCAGGAAAAAAA--CATATAA-TGCTTGTATGAAAGGACTGACGACAGCAATAT-TTTAAGCTCTTAAAAG---TCCGG-A--AGCCACTTAA-GCCAA-CCATA-ACTGCCGTGCCAAACCTTTATA--AA-AG-AG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATT-ACT--GG-T-GCGA-ATACGT--CGGGCAAAAG-A-----A-T--AGG-CCCTTAACACATTCCA----TTCATTC-ACGAAAACATGCTA-GC----GGGACTGCTCCA-ACAGCCAACTA-AGACAGAACA-TGT-GCCTGAAAGCCT-C-TAGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GACA--TAAAAGATA-A--CTGACAAATTCCCTGGCCGTCCTCTG--C-GAAAACTCA-G---CACAACGTAG-A---AAA--TTTG--CAAAAAACGTAT-ATTCA--TC-AT-TC-T-CTGT--TTCCTACTGT-TCAAT--AGTG--CCACTACTAACAACAC----TATGGGTTT-ATTCAAGAC-ATCGAT-CCCCATACTTTTGAC------C---ATA----GACCT------GC----ATC-----ATGTTcac
gi|4 : gtgATACAATAATCT--GTGTACCGAAATATTGGC-ATTTTCATGCATAAATCAA-GCTCAA-TCCGAAA-CT--GC-GGACG-T-TCT-TCT----TATTTGCGCTTACCTCC-ATAATGGGCTACAAAAGATAGCTCT--AACACA-------AATATA--TAAC-GATT-ATTCC----AAGCAGATGGCGTATTT--ACGTTCAATGCTA-AATAAATCCAACATGTCCT-CATT-CTATCCAAAAA-----GGG-T----------CAAAACCAACAC-GACTAC-ATTGA-ATGGCACCTTAGGC-----AAGAATGTTGTTC-AGACGTCGCTCCCAA--GGAATACACACA--TCTATGGAATCTTATTGTGAGCTCCAAATATTGATTCCCAGTAGCAAAAATCTCA-AA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTT--TCGCTAGAAACATCTTCTGTAACA-CTG---AAACCCAAATC----ACTGTC-T-CCAAGC---TATAC-AA-AA-AG--TTGTCC--TACTCATC-A---TA-CTGT--A-GGAA-GCG--AACTGG-T--GC-TGGCGACCTACGA--CG----ACAG-AT----ACTTGAAGAACCTCCTCACATTTCAACACTTCA-TCAGC-AAAACACAACA---A--TGAGCCTCCCCCACGCA---AACA--AGATCGGACA-TGT-G--TGAAAG-TTAT-TAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATTTAAGA---A-A--CTA-TCAATTTGTTGGACG-CCTTTGGTT-G--AGCTAGAA---TAC----TAATT---TAT--CTCAACC--AAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGG--TATAACGA--GAATT--CCTGAATCA--AACAT----CGTGGATTTCATCCAAGAC-AT--AT-CCCTATAA--CTGA-A----AA---ATCT--CAGCCT------GTAATGATA-----CTGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCCTCTGCAACAGTCCCCAAA-GTGGAAAGGTTCTG--AGAGGCAC------CGTA---A----CTGC-TTGACACTtatcatctt
gi|5 : --C--AAAAAG-AT-ATTTC--TT-CA-CC-GACTTT--TTTCT--TAT-AT--C-CAATCTTCCGAACTCA--AACAT----CTTGGCTTT-ATCCATGAC-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCT------CC----ATCAG---CACCTCTTA-CT-C--TA-CCT------ACAATATGGT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAACTTGTGTTAAAGCTTT------CAT---------------TTACACTC-GA------GACGT-CAGCAAAT-GCTTTCAG-AT----ACTTC---------CTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCC-CACAAGCTATATGGAA---AATCC-CTT-CG-AACATCCATGAAATTGAAATTTGT-AAATTTATTATCAA--ATTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GT-G-GC-AACAATTT-CGTCAACACTTTCCAGCACA-TCTC-AACCACCT----GTCT------------AGAAACAGCTGCTTTTC-GAGA-TGCT-TGGTGGGATACGG----TGATT---GA--CTACGATATCGTGCTTAGTGCT--GA-ACTTA-----GTGGTCTCTATCC-TCAGG--ACG---TT-TATCTCT-TTTTACTTGGTGCTAG--ATCT--ATCACAA-A-CGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGAT-ATTCTTAACTTCCGTTTTTTAAAGAGATGT------TAC---TAAG----TAGCAGATTGGTGCAACA-GAC------AGTTGCGTCATAT------CGCCTCTTAATCAATTCC--------------TTTTCCA-GTGTTTAT-TC--TCA--AAAGT---AGT-ACGCT-CTA--GACA----G-----CAACTTAG-----TTAC---CATCTTCTGTAAATACTGATCAGACTTTTTTT---CTTCTTCTTTT--CTTTTGTTT-GTTCGTTTCTTATTATATC---------ATG--------CAC-----TTA-----AATG-----TGTAAT-TGT---CTA-AT--GATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATG
gi|6 : ttacCGAACA-TGT-G--TGAACGTTTAT-TAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTT-GGACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TATATCTCA--C--AAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCG--TAT-GTGAT-GAATC--CTGATATCA--AACAT----CGTGGATT--ATTCAGGACTATT-ATATCCCATAT-T--GACA----AA---ATA---CATCTT------GT----ATT-----CTGTTTTTA-CT-CATTA-TCT------CGAAAGTGGT--GTCTTCTCTTC--CAA-A----TCAGA-ATGGAAGAGGCCTGTAAAATCCTC------CGTA---A----TCAC-TTACCACTCCGATTATA-GAAAA-CAGCGCAT-GGCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--ATTCCAC----GCAATAATAACGAGATTCTTCTGTGC-AAGTTTATTGTCAA--ATTATGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACTTT--GC-GC-A-AACCCTTTACA--AATGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCT-TGGTGGAAAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC------------------GACTGT---C-TCAAT--ACGA-CTTGTACTCAT-TTATCCTCGGTGCAAGGCACATG-ATATCAG-A-C----TTACCCGATC--ACGATCTTCCAGCA--CTTCAT-CTCTTAAACTTTCGT
gi|7 : ctaCATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCATTGTCATCAA----ATGAGCTCTGAC--TGGATTCCAGATTCC-CAAGGCGTTAGACATGGAGG-------TGT-TTTGT--CAACCTTT-CTATATT-TAGTATATACATAGA-CGGA-TTG-CTACATGA-AATACAA-AATCT--GTGTACG--AATATTGGC-ATTTTCA-GCAT---TTCAAGCTCAAATCC-AACACTTG-C-GGACGATATTTGTTTGCTGTATT-CCACTTAC-TCA-A-AATGGGCTACAAAA--T-ATTCT--AC-ACA-------A-AATA--TACG-A--TTATTCA----ACGC-AATGGCG-ATTT--ACGTTCAATGC-A-AATAAATCCAAT--GTCCTTCATTTCAATCCAAAAA-----AGG-----------GCAAA--CAACACCGAC-AC-ATTAACATGGCACCT-AGGC-----AAGAATGCTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCT----------------T-TTGAT-CCCAGTAGCAGAAT-CTC---------------AAAG----GACGCCAGGCA-----TT--GTGCTTAAACC---TTCTG-AA-AGCTG---AA-CCTAA-TC----ACTGTC-T-CCAAGC---TATAC-AGAAA-AG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACT-G-C--GG-T-GCGACCTACGA--
gi|8 : aagtttgacaccgtatggagaG--A-AATA-GACAA--AAGA---A-AAACT--CCTATTTTTTGACCG-ATTATG--G-G--AATTGG-A---CAC----CAA-A---ACT--CTTG--A--AAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCT--TAT-A-GACAGTCTC--TCTAGATCA--AACAC----TTTGTCTTC-ATACATGAC-GTC-AT-C-----AC-TCT-ACACTTCAA---GTATTTTAAACT------CC----ATCAG---CACATCCCA-CT-C--TA-TCT------ATAACATGGT--TACTT-TCCTC--CAA----------A-ATGGAAAATTTCAGTCAAAGCAGC------AATA---ACAGTTTGCATTTACACTC--A----A-AACGT-CAG---ATCTCTCTCAG-AT----ACTTC---------GTTTCTCCAATTCAATACTAT-TACAGCAGGAAGACCCT-TGTAAGCTATCTGGGA---AATCCAC---TCTAGCATCCATGAAATAGATTTGT-T-AAATTTATTACCAA--ATTGTGGGTTTTTCCTTACTCTTCTTCAGAAT-CTTGTCTCA-TGT--GT-GGTA-AACAATTCATG--AACATTTT-TAGCACA-CCTCGCAACACTCAAAAATCCACACAAACCAGTAGGAACAATTGCTTTTTGGAAA-TGCT-TGAT-GGAAACAT----TTATT---TA--CTATGATATTTTGCTT
gi|9 : tttcttctCGC-CAACACCGCTCTGGAAGCAACTCCACTCACACAATAT-GA-GAGATCTTCCTGGGCTAAGTC-ATTGGTAATAATTATGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATC-C-CTACCT----GTCC------------GGAAACGGCTCTCTTTC-GTGAACGCC-TGG---GGAACCA----TTAGTGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGA-TTA----TCTGGACTAT---CCTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAG-AAC----TTGCC-GATT--ATGATCTTCCTGCAATCTTCAT-CTCCTGAACTTTCGTTTCATTAAGAGATGC------AGC--GCATG----TATCA--------CAA-A-AAC------CTTCGTGTTGCAT------TGTAACTTA--CACTTGT--------------TTTTCTG---GTTTAT-GT--TTA--T-A-T---AGA-AT-TC-CTGT-GATA----A-----TATCC--------TTCT---CATC-ACTAT--ATATCATTT---CATTTATT---CCTCATCAATT--TTTTGG--C-A--CATGTC---------C---------ATA--------CACA----TTAATTG-AATGCC---TGGTAT-TGT---AT--AT--GA---A--T---atgtcttgaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC
Alignments
lowQualScore : 11 1 222222 333333 222222 11 1111 1 3333333333333 111 3333 111 111 111 1111 1 1 111111 1111111 22222222222 11111 1 22222222222222222222 11 11111 11 111 22 1111 11 11 11 2222222 111111 11 22 11 1111 1111 11 22222 11111 2222 111 11 111111 22222222 22222222222222 2222222 1111 11 11 1 111 1111 111 11 1111 11111 1111 2222222222 111111 11111111 11111111 1111 2222222222222 2222 2222222222222222222222 222 11111111 1 333333333333 33333333333333333333333 3333333 1111 333333333 2 1 222 33333333 1 111 1 11 11 1111 333333333333 111111 111 222222222222222222 222 111 11 1 11 2222 22 11 222 1 9999999999999999999999999999999999999999999999999 333333 11111 44444444444444 111 11111 3333333333 1111 55555555555555555555555 111 11111 2222222 111 11 2222222 77777777777777777777777777777777777777777777777777777 1111111 4444444444 11111 11 1
lowQualScore : 1 88 7 3 0 7 666666 1 888888 6 6 7 0 3 555555 88 0 0 0000 4 0 1 5 99999 3 0 1 2222222222222 777 6 8 88 99 99 6 99 1111 111 6 888 3 7 333 5 5 0 5 1 4444 5 1 1 5 8 5 0 555555 77 66 8888888 5 99999999999 5 22222 4 5 0 88 77 0 0 8888 2 77 1 3 8 1 22222222222222222222 33 6 6 99999 44 444 55 1 8 5555 11 11 1 11 8 0000000 0 000000 33 33 1 11 8 3 0 7777 1 6666 11 3 00000 6 2 2 11111 6 6 5555 888 000 77 66 5 11 0 66 0 5 3 888888 1 66 0 5 66 999 66 5 5 0 0 22222222 5 44444444444444 0 3 33 8 8 8 3 22 8888888 1 8 5555 99 3 6 6 99 3 1 6 11 6 0 444 6 99 6 6 5555 111 6 99 55 1 77 1 3333 99 6 44444 4444 2222222222 111111 0 6 5 44444444 5 77 999 88888888 77 1 77 2222 3 1 55 1 5 55 66 6 9999999999999 888 3333 9999999999999999999999 1 5 111 5 77777777 1 77 1 77 444444444444 1 3 1 11111111111111111111111 1 6666666 99 3 8 0 1 8 7777 222222222 1 1 1 0 0 0 1 6 6 1 22 555 7 22222222 44 6 4444 1 3 0 222 22 1 1 2 77 5 7 99 77 9999 00 1 55 1 1 6 1 6 4444 444444444444 1 1 6 1 6 6 0 444444 1 222 77 8 4 3 555555555555555555 333 6 222 88 3 1 8 3 1 0 0 88 1 8 8 8888 3 55 1 11 1 111 1 8 1 999 0 3333333333333333333333333333333333333333333333333 111111 8 55555 1 77777777777777 888 66666 5555555555 99 0000 88 99999999999999999999999 1 444 55 66666 2222222 444 3 11 99 3333333 88888888888888888888888888888888888888888888888888888 6 8888888 99 2222222222 33333 11 4 6 11
lowQualScore : . .. . . . . ...... . ...... . . . . . ...... .. . . .... . . . . ..... . . . ............. ... . . .. .. .. . .. .... ... . ... . . ... . . . . . .... . . . . . . . ...... .. .. ....... . ........... . ..... . . . .. .. . . .... . .. . . . . .................... .. . . ..... .. ... .. . . .... .. .. . .. . ....... . ...... .. .. . .. . . . .... . .... .. . ..... . . . ..... . . .... ... ... .. .. . .. . .. . . . ...... . .. . . .. ... .. . . . . ........ . .............. . . .. . . . . .. ....... . . .... .. . . . .. . . . .. . . ... . .. . . .... ... . .. .. . .. . .... .. . ..... .... .......... ...... . . . ........ . .. ... ........ .. . .. .... . . .. . . .. .. . ............. ... .... ...................... . . ... . ........ . .. . .. ............ . . . ....................... . ....... .. . . . . . .... ......... . . . . . . . . . . .. ... . ........ .. . .... . . . ... .. . . . .. . . .. .. .... .. . .. . . . . . .... ............ . . . . . . . ...... . ... .. . . . .................. ... . ... .. . . . . . . . .. . . . .... . .. . .. . ... . . . ... . ................................................. ...... . ..... . .............. ... ..... .......... .. .... .. ....................... . ... .. ..... ....... ... . .. .. ....... ..................................................... . ....... .. .......... ..... .. . . ..
lowQualScore : 0 55 3 3 7 3 000000 0 333333 7 7 3 7 7 333333 00 3 7 0000 3 7 3 7 77777 3 3 0 5555555555555 777 7 0 66 88 44 7 22 7777 333 7 333 2 3 444 7 0 7 7 0 2222 7 9 4 7 9 7 7 444444 99 77 6666666 7 00000000000 7 99999 0 7 7 00 99 7 4 9999 0 99 7 6 9 0 88888888888888888888 00 7 7 66666 00 000 88 4 0 0000 00 00 4 00 0 5555555 8 555555 22 88 2 22 0 2 6 0000 0 8888 00 2 00000 7 5 5 88888 7 7 8888 333 000 44 11 0 99 9 99 4 0 4 222222 0 99 9 0 99 111 99 0 0 2 2 77777777 7 44444444444444 7 8 88 0 0 0 8 88 0000000 0 0 0000 00 2 7 7 22 7 7 7 00 0 8 000 4 22 7 7 2222 777 7 22 88 0 77 0 3333 22 3 33333 2222 8888888888 555555 7 6 7 44444444 7 99 111 00000000 99 0 99 1111 0 0 99 0 0 22 11 1 8888888888888 888 0000 2222222222222222222222 7 7 999 7 77777777 7 99 4 99 333333333333 0 3 0 55555555555555555555555 0 2222222 44 8 0 6 4 0 0000 000000000 0 4 4 6 0 6 0 7 7 0 00 000 5 55555555 77 3 0000 0 3 3 777 00 0 0 5 77 5 3 22 33 3333 00 7 88 0 0 7 0 7 2222 222222222222 0 0 7 0 7 7 7 111111 7 666 99 7 0 0 222222222222222222 333 7 000 66 2 0 0 8 4 0 6 00 4 0 0 0000 2 44 4 22 4 666 4 0 0 666 0 2222222222222222222222222222222222222222222222222 000000 2 44444 0 00000000000000 666 00000 0000000000 00 6666 88 88888888888888888888888 0 000 22 44444 8888888 000 3 22 22 3333333 55555555555555555555555555555555555555555555555555555 7 2222222 22 2222222222 88888 00 0 0 88
consensus : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-TGCAAN--CANCGCC-GAC-AC-ATTAA---CATGGCGCCT-AGGC---AAAAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
Reference ( family-1202 ) : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-TGCAAA--CAACGCC-GAC-AC-ATTAA---CATGGCGCCT-AGGC---AAAAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
gi|1 : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCCTA------CA--TTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAAGGCGTTAGACAGGGAGGTTT-TTA-T--CAACCTTTCTATAT-----------TTAGTATATACATAGA-TGGT-TTG-CTACATGA-AATACAA-AATCT--GTGTACT--AATATGGGC-ATTTTCA-GCATA--TCA---CTCAAATC---AC-TT--GC-GGACAATATCTGCTG----CATT-ACACTTAC-TCC-A-AATGGGTTACAAAA--T-AATCT--AC-ACA-------A-AAT--------A--T-ATTCA----AAGC-AATGGCG-ATTT--ACGCTCAATGC-A-AATAATTTCAAT--GTCCTTCATTTCTACCCAAAAA-----GGG---CAAA--CAACACC-GAC-AC-ATTAA---CATGGTACCT-AGGC---AA--GAATGTTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CCCA-AAATGCCTGCATGAAAG----GACGCCAGACATGC-TTT--GCACTTAAATC---TTCTG-AACAGCTG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAA-ACCTCAGCGCATTTCAACAATTCA-TA-GC-AAAGCACACGATGCA--TGGGCCTCCCCCA-GCA---AACT--AGATCGGACA-TGT-G--TGAAAGTTTAT-AAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTTTGAACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TAT--CTCA--C--AAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCG--TAT-ATGAT-GAATC--CTGATATCA--AACAT----CGTGGACTT-ATCCAGAAT-ATT-AT-ACCCATA---TTGACA----AA---ATA---CAATCT------GT----ATC-----CTGTTTTTA-CT-CATTA-TCT------TGAAAGCGGT--GTCTTCGTTTT--CAA-A----CCAGA-ATGGAAAAGTTCGGTAAAACCCTC------CGTA---A----TCAC-TTACCACTCCGATTATAGGACAA-CAGCGCAT-GGTTGCTG-AT----CCCGA---------CTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--AGTCCA----CGCAATATTGACGAGATTCTTCTTTGC-AAGTTTATTTTCAA-----ATGGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACTTT--GC-GCGA-AACCCTTTACA--AACGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCA-TGGTGGGGAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GA-A-TTA----TCTGGACTGT---C-TCAAT--ACGA-CTTGTATTCAT-TTACCCCCGGTGCAAGGCACATG-ATCTCAG-A-C----TTACCTGATT--ACGATCTTCCAGCA--CTTCAT-CTCCTAAACTTTCGT---TTTAA------T------A-----------------A--------CAA-A----------TTTCGTGTTACAT------TGTAATTTA--CTCTTGTTCATCTGTGCTTTGTTTTCTG---GCTTAT-GT--TCA--T-A-T---AGA-AT-TC-CTGT-GATT----ATTATTTGTTT--------TTCT---CATCCACTAT--AT-TTATT-----TATTTTC---CCTCATGA-TT--ATTTTG--C-A--CATTTC---------C---------ATA--------CACATTAATT---AATGCAC--TGTATT-TGT---AT--AT--GA---A--T---TGTAT--A--TGTT--AATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|10 : TTCTTGACTTTTGCGTCTTTAA-AGATGTTACATAAGA--GCATGCCATTAATA--------TTA-A-AAC------AGTTGTACCATATATGACTTGTAAACTA--CA-TCTT--------------TTTTGTGTGTGTTTATTGTAATTAGGTAA-TT--AGCCAT-CCACTGT--ATATGCTA-----TATTTAGCTAGATTTAT---CATCTTCTGT--A-ATTACTG---TACACTACAGACTTCGTCTTTTTTCTTTTGTTTTATTCATTTC---------TTATTACAGAATG--------TGCGTT-ACTTGTAATGATAATTGTAAT-GGTCTCATA-ATTTAA---T--T---TCTTT--GT-TGTA--CATGCAATCTCCA-CTGGGAGGAAATAAAGAATGAATGA
gi|11 : tctttttctactatgtgctagaacactcacaaaaactatcactcaatatgacagactcagcttgtattaGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGGTGT-ACT-TTCCA-CATTCTTGTAC-----------CTCGTAT-T-CATAGA-CGAT-CTT-CTATTAGA-GATTCAA-AATCTAAGTTTA----AACATTGGA-GTCTTCA-ATAT---TCAAAGCTCAAACCCT-AC-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCC-ACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-GTTT--ACCTTTAATGCTG-CA-AAATCCAAC--GTTCTTTATTTTCAT-CAAAAA-----TGT-TGTAAT--C-CCGCT-GAA-ACTCTCAG---C-TGGCGTCT-TGGT---AAAAAAAAACTATCG-AA---TC--TTCCAA--TTCATACAATCA--TCT-TGGAA
gi|12 : G-AACATCTT---AA-CCCCA-TG----ACTGTT-G-CCTAAC---TTTATTAT-AA-AA--TCGTCT--AATTA-TTGG---TT-ATTT--ATGGGA-GCG--AATT-A-T--GGAT-ACGATCTTCGG--GC---AAAAG-GTATACG-TTTA-----TTTAATATATTCCGGCCTTTCA-TC-GC-AAAACATGCT----A--CGGGACTGCCCCA-ACA---CTCTTAAAAGCAGACA-GGTGG--CAAAAGCCTGTCTAGG
gi|13 : TAAAAACTAT-TCACACTCGTAATATCGG----CACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACATT--TCTC---CATTGTAGTTAACCA-G--ACCACTTATAGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGA-atcccgaccagttacagcagagacgaatgcaagaattgcgcagattatgaccgtcggctgtggaacgtcaacacaagcgta
gi|15 : attatAATTCTAGC-CTTGGC-TTATGACATCTGTAT----TATT-GCTCTCACATCC-ATGAAGAGC-CCGACA--T-AGCCTTAAG-ACAATCATATA-CATCTATTTA-A--T-ACTCCGTGGACTC-GCTGGCG--TTT--CCGGTAACTGCTG-CA-AAATTCAAT--GTTTTGTATTTTCA
gi|16 : -AA-TGCATGCAGAAAAG----GACAACATTCACAG-TCT--GCTCTTAAAA-------TA-AACGGACA---AA-TCAAT-TCTGCGACTTTA-T-CCAAGT---TTTAT-AA-AT-GGC-TTATTC--T-TCC-TGGAA--TC-TTAT--ACGGAA-GCG--AACT-G-T--GG-T-GTGATATCAGA--CA---GAAAG-AT----G-Tca
gi|17 : ATT-GCTGTCAC-TCC-ACGA-GAGCTCAAAAA--T-G-TGT--AC-ACA-------A-CATC--TTTCAA--T-ACTCA----GTAC-GCTAGTG-GTTT--ACCTTTAATGTTG-CA-AAATCCAAC--GT-TTTTATTT-CATC--AAAA-----TGGTTGTAAT--C-CCGCT-GAC-AC-ACT
gi|18 : AGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGACCGAT-CTTACTATC--A-CACACA------T--GTG-AA---ATCA---------TTCA-ATAT---TCAAAGC-CTAACCCT-AC-CTTGCCAGAATGATATcagct
gi|19 : tTCTTCATTT--CTCTTGTTT-G--CATTT--------------------ATGTCTGGTGACACAGT-GTT---CAAA-----TGTAATGTGT---ATGTAT--TA---G--TATGTTTTTCCATGTGTTTCCAT---ATCTCCACATGG-AGGAAATAAAGAAGGAATGA
gi|2 : atttGT---TATAC-AG-AA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACT-T-TCTGG-T-GCGACTTACGC--CA---CCAAGCAT----T-TTCCAG--CCTCAGTACTCTTCAACACTTTA-TT-GC-AAA-----CTATGCAATTGGGCTTTACCAA-ATA---TACT--A-ATCTGACAATTT-G--TTGAAGCTTAC-TTGACATC--TTT-TCGATTC---TT-CTG--A-ATTCTGACAA--AAGA---AGA--CT--CCAATTTTTTGGCCG-ATTATG--TTG--AGGTTG-GATTTAC----CAA-AAGGTTT--CTAC--C--AAAAAGATT-ATTTC--TTCACACC-GACTTT--TTTCT--TAT-ACCAA-GTCTC--CCGAACTCA--AA-ATACTCTTTGGCTTT-ATCCATGAC-GTC-AT-TCTC-TAC-TCTT-CA----AGACCATAG--TAACCT------GC----CTTCAGCACCGTCGTTA-CT---TTACTCT------ACAAGATGAT--TACTTCTCTTC--CAA-AT---GCATC-ATGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTA----TCAT-TTTACACTCCGA-------ACGTCCAGCGAAT-GCTTTCAGCAT----ACTTC---------CTTTATACAGTTCAACACTAT-TACAGCAGGAAGACCCCACAA-GCTAATATGGAA---A-TCCTT---CG-AACACCTATGAAATTGAAATTTGCAAAATTTATTATCAA--TTTATGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GTAGCAACAA--TTTTGTGC-AACATTTTCCAGCGCA-TCTC-AACCACCT----GTCT------------AGGAACAGCTGCTTTTC-GAGA-TGCTCTGGTGGGTTACAG----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGA-ACTTAGCGGTCT---CTAT---C-CCAGG--ACG--TTTATCTTTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAACA-CTA--TTGCTCAATTTGACGGAC--CCGGC---CTACATATTTCTTAATTTCCGGTT-TTTAAGAGATGT------AGCAAGC-TT----TGGTG--------CAA-ACGACAGTTGGCGTCATGTCGCCTC-----TTTAA--TA--TA-TTCT--------------TTTTCCA-GTGTTTAT-TC--TCA--AAA-TGTAAGA-AA-CG-CTCTAGACA----G-----CAACT--------TTTTAACCATCTTCTGT--AC-TTTTTC---CCCTTCTC---TC-------TT--CTTTTGTTT-A--TATT---------------------ATG--------TAC-TT-A-----AATG-----TGTAAT-TGT---CTA-AT--AATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAAAAAAGAAAGAAT
gi|20 : gtatcgcgg-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCTCCTTCAGC----ACC---------TCTTA-CT---TTA-TCT------ACAAGATGAT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAA
gi|21 : -AG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CC-A-T--G--T-GCGACCTCTCATTC------AAG-ATA---G-TTGAAA-AATTCAGCGCAc
gi|22 : GGTGGAAAACTCGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC--AA-G-TTA----TCAGGACTGTTGAC-TCAA
gi|23 : TATCA-CTTGGCGTCCGACAGGGAGGTGTAATT-T--C
gi|3 : GGTTTCCGGTATCAACAAGGCGTCCGACAGGGAGGGTG-AT------A-CTTTCCTACATTCTTGCTAATCCTCGTAT-T-CATAGA-CGATCTTT-CTATTAGATGATTCAA-AATCT--AAGTTA---AACATTGGGAGTCTTCA-CTAT---TCAAAGC-CAAACCCTA-C-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCCTACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-ATTTAAACCTTTAATG-TGCAAT-ATTTCATC--GTCTTCTATTT-CATCTAAAAAATGTTTGG-TATATT--CCCCGCTAAAA-AC-ACTCATGCCCTGGCGTCT--GGTAAAAAAAAAAAACTATCCGAA---TC--TTCCAATTTCAATACTATCAACTTT-TGAATTCT--TTA--AACTCT-AAT-TTGA--CCCAGGAAAAAAA--CATATAA-TGCTTGTATGAAAGGACTGACGACAGCAATAT-TTTAAGCTCTTAAAAG---TCCGG-A--AGCCACTTAA-GCCAA-CCATA-ACTGCCGTGCCAAACCTTTATA--AA-AG-AG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATT-ACT--GG-T-GCGA-ATACGT--CGGGCAAAAG-A-----A-T--AGG-CCCTTAACACATTCCA----TTCATTC-ACGAAAACATGCTA-GC----GGGACTGCTCCA-ACAGCCAACTA-AGACAGAACA-TGT-GCCTGAAAGCCT-C-TAGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GACA--TAAAAGATA-A--CTGACAAATTCCCTGGCCGTCCTCTG--C-GAAAACTCA-G---CACAACGTAG-A---AAA--TTTG--CAAAAAACGTAT-ATTCA--TC-AT-TC-T-CTGT--TTCCTACTGT-TCAAT--AGTG--CCACTACTAACAACAC----TATGGGTTT-ATTCAAGAC-ATCGAT-CCCCATACTTTTGAC------C---ATA----GACCT------GC----ATC-----ATGTTcac
gi|4 : gtgATACAATAATCT--GTGTACCGAAATATTGGC-ATTTTCATGCATAAATCAA-GCTCAA-TCCGAAA-CT--GC-GGACG-T-TCT-TCT----TATTTGCGCTTACCTCC-ATAATGGGCTACAAAAGATAGCTCT--AACACA-------AATATA--TAAC-GATT-ATTCC----AAGCAGATGGCGTATTT--ACGTTCAATGCTA-AATAAATCCAACATGTCCT-CATT-CTATCCAAAAA-----GGG-T-CAAAACCAACAC--GACTAC-ATTGA----ATGGCACCTTAGGC---AA--GAATGTTGTTC-AGACGTCGCTCCCAA--GGAATACACACA--TCTATGGAATCTTATTGTGAGCTCCAAATATTGATTCCCAGTAGCAAAAATCTCA-AA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTT--TCGCTAGAAACATCTTCTGTAACA-CTG---AAACCCAAATC----ACTGTC-T-CCAAGC---TATAC-AA-AA-AG--TTGTCC--TACTCATC-A---TA-CTGT--A-GGAA-GCG--AACTGG-T--GC-TGGCGACCTACGA--CG----ACAG-AT----ACTTGAAGAACCTCCTCACATTTCAACACTTCA-TCAGC-AAAACACAACA---A--TGAGCCTCCCCCACGCA---AACA--AGATCGGACA-TGT-G--TGAAAG-TTAT-TAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATTTAAGA---A-A--CTA-TCAATTTGTTGGACG-CCTTTGGTT-G--AGCTAGAA---TAC----TAATT---TAT--CTCAACC--AAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGG--TATAACGA--GAATT--CCTGAATCA--AACAT----CGTGGATTTCATCCAAGAC-AT--AT-CCCTATAA--CTGA-A----AA---ATCT--CAGCCT------GTAATGATA-----CTGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCCTCTGCAACAGTCCCCAAA-GTGGAAAGGTTCTG--AGAGGCAC------CGTA---A----CTGC-TTGACACTtatcatctt
gi|5 : --C--AAAAAG-AT-ATTTC--TT-CA-CC-GACTTT--TTTCT--TAT-AT--C-CAATCTTCCGAACTCA--AACAT----CTTGGCTTT-ATCCATGAC-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCT------CC----ATCAG---CACCTCTTA-CT-C--TA-CCT------ACAATATGGT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAACTTGTGTTAAAGCTTT------CA---------------TTTACACT-CG-----A-GACGT-CAGCAAAT-GCTTTCAG-AT----ACTTC---------CTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCC-CACAAGCTATATGGAA---AATCC-CTT-CG-AACATCCATGAAATTGAAATTTGT-AAATTTATTATCAA--ATTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GT-G-GC-AACAATTT-CGTCAACACTTTCCAGCACA-TCTC-AACCACCT----GTCT------------AGAAACAGCTGCTTTTC-GAGA-TGCT-TGGTGGGATACGG----TGATT---GA--CTACGATATCGTGCTTAGTGCT--GA-ACTTA-----GTGGTCTCTATCC-TCAGG--ACG---TT-TATCTCT-TTTTACTTGGTGCTAG--ATCT--ATCACAA-A-CGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGAT-ATTCTTAACTTCCGTTTTTTAAAGAGATGT------TAC---TAAG----TAGCAGATTGGTGCAACA-GAC------AGTTGCGTCATAT------CGCCTCTTAATCAATTCC--------------TTTTCCA-GTGTTTAT-TC--TCA--AAAGT---AGT-ACGCT-CTA--GACA----G-----CAACTTAG-----TTAC---CATCTTCTGTAAATACTGATCAGACTTTTTTT---CTTCTTCTTTT--CTTTTGTTT-GTTCGTTTCTTATTATATC---------ATG--------CAC-TT-A-----AATG-----TGTAAT-TGT---CTA-AT--GATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATG
gi|6 : ttacCGAACA-TGT-G--TGAACGTTTAT-TAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTT-GGACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TATATCTCA--C--AAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCG--TAT-GTGAT-GAATC--CTGATATCA--AACAT----CGTGGATT--ATTCAGGACTATT-ATATCCCATAT-T--GACA----AA---ATA---CATCTT------GT----ATT-----CTGTTTTTA-CT-CATTA-TCT------CGAAAGTGGT--GTCTTCTCTTC--CAA-A----TCAGA-ATGGAAGAGGCCTGTAAAATCCTC------CGTA---A----TCAC-TTACCACTCCGATTATA-GAAAA-CAGCGCAT-GGCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--ATTCCAC----GCAATAATAACGAGATTCTTCTGTGC-AAGTTTATTGTCAA--ATTATGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACTTT--GC-GC-A-AACCCTTTACA--AATGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCT-TGGTGGAAAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC------------------GACTGT---C-TCAAT--ACGA-CTTGTACTCAT-TTATCCTCGGTGCAAGGCACATG-ATATCAG-A-C----TTACCCGATC--ACGATCTTCCAGCA--CTTCAT-CTCTTAAACTTTCGT
gi|7 : ctaCATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCATTGTCATCAA----ATGAGCTCTGAC--TGGATTCCAGATTCC-CAAGGCGTTAGACATGGAGGTGT-TTTGT--CAACCTTTCTATAT-----------TTAGTATATACATAGA-CGGA-TTG-CTACATGA-AATACAA-AATCT--GTGTACG--AATATTGGC-ATTTTCA-GCAT---TTCAAGCTCAAATCC-AACACTTG-C-GGACGATATTTGTTTGCTGTATT-CCACTTAC-TCA-A-AATGGGCTACAAAA--T-ATTCT--AC-ACA-------A-AATA--TACG-A--TTATTCA----ACGC-AATGGCG-ATTT--ACGTTCAATGC-A-AATAAATCCAAT--GTCCTTCATTTCAATCCAAAAA-----AGG--GCAAA--CAACACC-GAC-AC-ATTAA---CATGGCACCT-AGGC---AA--GAATGCTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTT-----------------TTGAT-CCCAGTAGCAGAAT-CTC---------------AAAG----GACGCCAGGCA-----TT--GTGCTTAAACC---TTCTG-AA-AGCTG---AA-CCTAA-TC----ACTGTC-T-CCAAGC---TATAC-AGAAA-AG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACT-G-C--GG-T-GCGACCTACGA--
gi|8 : aagtttgacaccgtatggagaG--A-AATA-GACAA--AAGA---A-AAACT--CCTATTTTTTGACCG-ATTATG--G-G--AATTGG-A---CAC----CAA-A---ACT--CTTG--A--AAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCT--TAT-A-GACAGTCTC--TCTAGATCA--AACAC----TTTGTCTTC-ATACATGAC-GTC-AT-C-----AC-TCT-ACACTTCAA---GTATTTTAAACT------CC----ATCAG---CACATCCCA-CT-C--TA-TCT------ATAACATGGT--TACTT-TCCTC--CAA----------A-ATGGAAAATTTCAGTCAAAGCAGC------AATA---ACAGTTTGCATTTACACTC--A----A-AACGT-CAG---ATCTCTCTCAG-AT----ACTTC---------GTTTCTCCAATTCAATACTAT-TACAGCAGGAAGACCCT-TGTAAGCTATCTGGGA---AATCCAC---TCTAGCATCCATGAAATAGATTTGT-T-AAATTTATTACCAA--ATTGTGGGTTTTTCCTTACTCTTCTTCAGAAT-CTTGTCTCA-TGT--GT-GGTA-AACAATTCATG--AACATTTT-TAGCACA-CCTCGCAACACTCAAAAATCCACACAAACCAGTAGGAACAATTGCTTTTTGGAAA-TGCT-TGAT-GGAAACAT----TTATT---TA--CTATGATATTTTGCTT
gi|9 : tttcttctCGC-CAACACCGCTCTGGAAGCAACTCCACTCACACAATAT-GA-GAGATCTTCCTGGGCTAAGTC-ATTGGTAATAATTATGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATC-C-CTACCT----GTCC------------GGAAACGGCTCTCTTTC-GTGAACGCC-TGG---GGAACCA----TTAGTGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGA-TTA----TCTGGACTAT---CCTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAG-AAC----TTGCC-GATT--ATGATCTTCCTGCAATCTTCAT-CTCCTGAACTTTCGTTTCATTAAGAGATGC------AGC--GCATG----TATCA--------CAA-A-AAC------CTTCGTGTTGCAT------TGTAACTTA--CACTTGT--------------TTTTCTG---GTTTAT-GT--TTA--T-A-T---AGA-AT-TC-CTGT-GATA----A-----TATCC--------TTCT---CATC-ACTAT--ATATCATTT---CATTTATT---CCTCATCAATT--TTTTGG--C-A--CATGTC---------C---------ATA--------CACATTAATTG--AATGCC---TGGTAT-TGT---AT--AT--GA---A--T---atgtcttgaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC
Alignments
lowQualScore : 11 1 222222 333333 222222 11 1111 1 3333333333333 111 3333 111 111 111 1111 1 1 111111 1111111 22222222222 11111 1 22222222222 111111 11 11111 11 111 22 1111 11 11 11 2222222 111111 11 22 11 1111 1111 11 22222 11111 2222 111 11 111111 22222222 22222222222222 2222222 1111 11 11 1 111 1111 111 11 1111 11111 1111 2222222222 111111 11111111 11111111 1111 2222222222222 2222 2222222222222222222222 222 11111111 1 333333333333 22222222222222222222222 1 444444 1111 333333333 2 1 222 33333333 1 111 1 11 11 1111 333333333333 111111 111 222222222222222222 222 111 11 1 11 2222 22 11 222 1 9999999999999999999999999999999999999999999999999 333333 11111 44444444444444 111 11111 3333333333 1111 55555555555555555555555 111 11111 2222222 111 11 2222222 77777777777777777777777777777777777777777777777777777 1111111 4444444444 11111 11 1
lowQualScore : 1 88 7 3 0 7 666666 1 888888 6 6 7 0 3 555555 88 0 0 0000 4 0 1 5 99999 3 0 1 2222222222222 777 6 8 88 99 99 6 99 1111 111 6 888 3 7 333 5 5 0 5 1 4444 5 1 1 5 8 5 0 555555 77 66 8888888 5 99999999999 5 22222 4 5 0 88 77 0 0 8888 2 77 1 3 8 1 11111111111 222222 33 6 6 99999 44 444 55 1 8 5555 11 11 1 11 8 0000000 0 000000 33 33 1 11 8 3 0 7777 1 6666 11 3 00000 6 2 2 11111 6 6 5555 888 000 77 66 5 11 0 66 0 5 3 888888 1 66 0 5 66 999 66 5 5 0 0 22222222 5 44444444444444 0 3 33 8 8 8 3 22 8888888 1 8 5555 99 3 6 6 99 3 1 6 11 6 0 444 6 99 6 6 5555 111 6 99 55 1 77 1 3333 99 6 44444 4444 2222222222 111111 0 6 5 44444444 5 77 999 88888888 77 1 77 2222 3 1 55 1 5 55 66 6 9999999999999 888 3333 9999999999999999999999 1 5 111 5 77777777 1 77 1 77 444444444444 1 3 1 77777777777777777777777 1 0 555555 99 3 8 0 1 8 7777 222222222 1 1 1 0 0 0 1 6 6 1 22 555 7 22222222 44 6 4444 1 3 0 222 22 1 1 2 77 5 7 99 77 9999 00 1 55 1 1 6 1 6 4444 444444444444 1 1 6 1 6 6 0 444444 1 222 77 8 4 3 555555555555555555 333 6 222 88 3 1 8 3 1 0 0 88 1 8 8 8888 3 55 1 11 1 111 1 8 1 999 0 3333333333333333333333333333333333333333333333333 111111 8 55555 1 77777777777777 888 66666 5555555555 99 0000 88 99999999999999999999999 1 444 55 66666 2222222 444 3 11 99 3333333 88888888888888888888888888888888888888888888888888888 6 8888888 99 2222222222 33333 11 4 6 11
lowQualScore : . .. . . . . ...... . ...... . . . . . ...... .. . . .... . . . . ..... . . . ............. ... . . .. .. .. . .. .... ... . ... . . ... . . . . . .... . . . . . . . ...... .. .. ....... . ........... . ..... . . . .. .. . . .... . .. . . . . ........... ...... .. . . ..... .. ... .. . . .... .. .. . .. . ....... . ...... .. .. . .. . . . .... . .... .. . ..... . . . ..... . . .... ... ... .. .. . .. . .. . . . ...... . .. . . .. ... .. . . . . ........ . .............. . . .. . . . . .. ....... . . .... .. . . . .. . . . .. . . ... . .. . . .... ... . .. .. . .. . .... .. . ..... .... .......... ...... . . . ........ . .. ... ........ .. . .. .... . . .. . . .. .. . ............. ... .... ...................... . . ... . ........ . .. . .. ............ . . . ....................... . . ...... .. . . . . . .... ......... . . . . . . . . . . .. ... . ........ .. . .... . . . ... .. . . . .. . . .. .. .... .. . .. . . . . . .... ............ . . . . . . . ...... . ... .. . . . .................. ... . ... .. . . . . . . . .. . . . .... . .. . .. . ... . . . ... . ................................................. ...... . ..... . .............. ... ..... .......... .. .... .. ....................... . ... .. ..... ....... ... . .. .. ....... ..................................................... . ....... .. .......... ..... .. . . ..
lowQualScore : 0 55 3 3 7 3 000000 0 333333 7 7 3 7 7 333333 00 3 7 0000 3 7 3 7 77777 3 3 0 5555555555555 777 7 0 66 88 44 7 22 7777 333 7 333 2 3 444 7 0 7 7 0 2222 7 9 4 7 9 7 7 444444 99 77 6666666 7 00000000000 7 99999 0 7 7 00 99 7 4 9999 0 99 7 6 9 0 00000000000 555555 00 7 7 66666 00 000 88 4 0 0000 00 00 4 00 0 5555555 8 555555 22 88 2 22 0 2 6 0000 0 8888 00 2 00000 7 5 5 88888 7 7 8888 333 000 44 11 0 99 9 99 4 0 4 222222 0 99 9 0 99 111 99 0 0 2 2 77777777 7 44444444444444 7 8 88 0 0 0 8 88 0000000 0 0 0000 00 2 7 7 22 7 7 7 00 0 8 000 4 22 7 7 2222 777 7 22 88 0 77 0 3333 22 3 33333 2222 8888888888 555555 7 6 7 44444444 7 99 111 00000000 99 0 99 1111 0 0 99 0 0 22 11 1 8888888888888 888 0000 2222222222222222222222 7 7 999 7 77777777 7 99 4 99 333333333333 0 3 0 55555555555555555555555 0 0 222222 44 8 0 6 4 0 0000 000000000 0 4 4 6 0 6 0 7 7 0 00 000 5 55555555 77 3 0000 0 3 3 777 00 0 0 5 77 5 3 22 33 3333 00 7 88 0 0 7 0 7 2222 222222222222 0 0 7 0 7 7 7 111111 7 666 99 7 0 0 222222222222222222 333 7 000 66 2 0 0 8 4 0 6 00 4 0 0 0000 2 44 4 22 4 666 4 0 0 666 0 2222222222222222222222222222222222222222222222222 000000 2 44444 0 00000000000000 666 00000 0000000000 00 6666 88 88888888888888888888888 0 000 22 44444 8888888 000 3 22 22 3333333 55555555555555555555555555555555555555555555555555555 7 2222222 22 2222222222 88888 00 0 0 88
consensus : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-TGCAAN--CANCGCC-GAC-AC-ATTAA---CATGGCGCCT-AGGC---AAAAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
Reference ( family-1202 ) : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-TGCAAN--CANCGCC-GAC-AC-ATTAA---CATGGCGCCT-AGGC---AAAAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
gi|1 : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCCTA------CA--TTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAAGGCGTTAGACAGGGAGGTTT-TTA-T--CAACCTTTCTATAT-----------TTAGTATATACATAGA-TGGT-TTG-CTACATGA-AATACAA-AATCT--GTGTACT--AATATGGGC-ATTTTCA-GCATA--TCA---CTCAAATC---AC-TT--GC-GGACAATATCTGCTG----CATT-ACACTTAC-TCC-A-AATGGGTTACAAAA--T-AATCT--AC-ACA-------A-AAT--------A--T-ATTCA----AAGC-AATGGCG-ATTT--ACGCTCAATGC-A-AATAATTTCAAT--GTCCTTCATTTCTACCCAAAAA-----GGG---CAAA--CAACACC-GAC-AC-ATTAA---CATGGTACCT-AGGC---AA--GAATGTTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CCCA-AAATGCCTGCATGAAAG----GACGCCAGACATGC-TTT--GCACTTAAATC---TTCTG-AACAGCTG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAA-ACCTCAGCGCATTTCAACAATTCA-TA-GC-AAAGCACACGATGCA--TGGGCCTCCCCCA-GCA---AACT--AGATCGGACA-TGT-G--TGAAAGTTTAT-AAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTTTGAACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TAT--CTCA--C--AAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCG--TAT-ATGAT-GAATC--CTGATATCA--AACAT----CGTGGACTT-ATCCAGAAT-ATT-AT-ACCCATA---TTGACA----AA---ATA---CAATCT------GT----ATC-----CTGTTTTTA-CT-CATTA-TCT------TGAAAGCGGT--GTCTTCGTTTT--CAA-A----CCAGA-ATGGAAAAGTTCGGTAAAACCCTC------CGTA---A----TCAC-TTACCACTCCGATTATAGGACAA-CAGCGCAT-GGTTGCTG-AT----CCCGA---------CTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--AGTCCA----CGCAATATTGACGAGATTCTTCTTTGC-AAGTTTATTTTCAA-----ATGGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACTTT--GC-GCGA-AACCCTTTACA--AACGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCA-TGGTGGGGAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GA-A-TTA----TCTGGACTGT---C-TCAAT--ACGA-CTTGTATTCAT-TTACCCCCGGTGCAAGGCACATG-ATCTCAG-A-C----TTACCTGATT--ACGATCTTCCAGCA--CTTCAT-CTCCTAAACTTTCGT---TTTAA------T------A-----------------A--------CAA-A----------TTTCGTGTTACAT------TGTAATTTA--CTCTTGTTCATCTGTGCTTTGTTTTCTG---GCTTAT-GT--TCA--T-A-T---AGA-AT-TC-CTGT-GATT----ATTATTTGTTT--------TTCT---CATCCACTAT--AT-TTATT-----TATTTTC---CCTCATGA-TT--ATTTTG--C-A--CATTTC---------C---------ATA--------CACATTAATT---AATGCAC--TGTATT-TGT---AT--AT--GA---A--T---TGTAT--A--TGTT--AATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|10 : TTCTTGACTTTTGCGTCTTTAA-AGATGTTACATAAGA--GCATGCCATTAATA--------TTA-A-AAC------AGTTGTACCATATATGACTTGTAAACTA--CA-TCTT--------------TTTTGTGTGTGTTTATTGTAATTAGGTAA-TT--AGCCAT-CCACTGT--ATATGCTA-----TATTTAGCTAGATTTAT---CATCTTCTGT--A-ATTACTG---TACACTACAGACTTCGTCTTTTTTCTTTTGTTTTATTCATTTC---------TTATTACAGAATG--------TGCGTT-ACTTGTAATGATAATTGTAAT-GGTCTCATA-ATTTAA---T--T---TCTTT--GT-TGTA--CATGCAATCTCCA-CTGGGAGGAAATAAAGAATGAATGA
gi|11 : tctttttctactatgtgctagaacactcacaaaaactatcactcaatatgacagactcagcttgtattaGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGGTGT-ACT-TTCCA-CATTCTTGTAC-----------CTCGTAT-T-CATAGA-CGAT-CTT-CTATTAGA-GATTCAA-AATCTAAGTTTA----AACATTGGA-GTCTTCA-ATAT---TCAAAGCTCAAACCCT-AC-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCC-ACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-GTTT--ACCTTTAATGCTG-CA-AAATCCAAC--GTTCTTTATTTTCAT-CAAAAA-----TGT-TGTAAT--C-CCGCT-GAA-ACTCTCAG---C-TGGCGTCT-TGGT---AAAAAAAAACTATCG-AA---TC--TTCCAA--TTCATACAATCA--TCT-TGGAA
gi|12 : G-AACATCTT---AA-CCCCA-TG----ACTGTT-G-CCTAAC---TTTATTAT-AA-AA--TCGTCT--AATTA-TTGG---TT-ATTT--ATGGGA-GCG--AATT-A-T--GGAT-ACGATCTTCGG--GC---AAAAG-GTATACG-TTTA-----TTTAATATATTCCGGCCTTTCA-TC-GC-AAAACATGCT----A--CGGGACTGCCCCA-ACA---CTCTTAAAAGCAGACA-GGTGG--CAAAAGCCTGTCTAGG
gi|13 : TAAAAACTAT-TCACACTCGTAATATCGG----CACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACATT--TCTC---CATTGTAGTTAACCA-G--ACCACTTATAGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGA-atcccgaccagttacagcagagacgaatgcaagaattgcgcagattatgaccgtcggctgtggaacgtcaacacaagcgta
gi|15 : attatAATTCTAGC-CTTGGC-TTATGACATCTGTAT----TATT-GCTCTCACATCC-ATGAAGAGC-CCGACA--T-AGCCTTAAG-ACAATCATATA-CATCTATTTA-A--T-ACTCCGTGGACTC-GCTGGCG--TTT--CCGGTAACTGCTG-CA-AAATTCAAT--GTTTTGTATTTTCA
gi|16 : -AA-TGCATGCAGAAAAG----GACAACATTCACAG-TCT--GCTCTTAAAA-------TA-AACGGACA---AA-TCAAT-TCTGCGACTTTA-T-CCAAGT---TTTAT-AA-AT-GGC-TTATTC--T-TCC-TGGAA--TC-TTAT--ACGGAA-GCG--AACT-G-T--GG-T-GTGATATCAGA--CA---GAAAG-AT----G-Tca
gi|17 : ATT-GCTGTCAC-TCC-ACGA-GAGCTCAAAAA--T-G-TGT--AC-ACA-------A-CATC--TTTCAA--T-ACTCA----GTAC-GCTAGTG-GTTT--ACCTTTAATGTTG-CA-AAATCCAAC--GT-TTTTATTT-CATC--AAAA-----TGGTTGTAAT--C-CCGCT-GAC-AC-ACT
gi|18 : AGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGACCGAT-CTTACTATC--A-CACACA------T--GTG-AA---ATCA---------TTCA-ATAT---TCAAAGC-CTAACCCT-AC-CTTGCCAGAATGATATcagct
gi|19 : tTCTTCATTT--CTCTTGTTT-G--CATTT--------------------ATGTCTGGTGACACAGT-GTT---CAAA-----TGTAATGTGT---ATGTAT--TA---G--TATGTTTTTCCATGTGTTTCCAT---ATCTCCACATGG-AGGAAATAAAGAAGGAATGA
gi|2 : atttGT---TATAC-AG-AA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACT-T-TCTGG-T-GCGACTTACGC--CA---CCAAGCAT----T-TTCCAG--CCTCAGTACTCTTCAACACTTTA-TT-GC-AAA-----CTATGCAATTGGGCTTTACCAA-ATA---TACT--A-ATCTGACAATTT-G--TTGAAGCTTAC-TTGACATC--TTT-TCGATTC---TT-CTG--A-ATTCTGACAA--AAGA---AGA--CT--CCAATTTTTTGGCCG-ATTATG--TTG--AGGTTG-GATTTAC----CAA-AAGGTTT--CTAC--C--AAAAAGATT-ATTTC--TTCACACC-GACTTT--TTTCT--TAT-ACCAA-GTCTC--CCGAACTCA--AA-ATACTCTTTGGCTTT-ATCCATGAC-GTC-AT-TCTC-TAC-TCTT-CA----AGACCATAG--TAACCT------GC----CTTCAGCACCGTCGTTA-CT---TTACTCT------ACAAGATGAT--TACTTCTCTTC--CAA-AT---GCATC-ATGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTA----TCAT-TTTACACTCCGA-------ACGTCCAGCGAAT-GCTTTCAGCAT----ACTTC---------CTTTATACAGTTCAACACTAT-TACAGCAGGAAGACCCCACAA-GCTAATATGGAA---A-TCCTT---CG-AACACCTATGAAATTGAAATTTGCAAAATTTATTATCAA--TTTATGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GTAGCAACAA--TTTTGTGC-AACATTTTCCAGCGCA-TCTC-AACCACCT----GTCT------------AGGAACAGCTGCTTTTC-GAGA-TGCTCTGGTGGGTTACAG----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGA-ACTTAGCGGTCT---CTAT---C-CCAGG--ACG--TTTATCTTTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAACA-CTA--TTGCTCAATTTGACGGAC--CCGGC---CTACATATTTCTTAATTTCCGGTT-TTTAAGAGATGT------AGCAAGC-TT----TGGTG--------CAA-ACGACAGTTGGCGTCATGTCGCCTC-----TTTAA--TA--TA-TTCT--------------TTTTCCA-GTGTTTAT-TC--TCA--AAA-TGTAAGA-AA-CG-CTCTAGACA----G-----CAACT--------TTTTAACCATCTTCTGT--AC-TTTTTC---CCCTTCTC---TC-------TT--CTTTTGTTT-A--TATT---------------------ATG--------TAC-TT-A-----AATG-----TGTAAT-TGT---CTA-AT--AATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAAAAAAGAAAGAAT
gi|20 : gtatcgcgg-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCTCCTTCAGC----ACC---------TCTTA-CT---TTA-TCT------ACAAGATGAT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAA
gi|21 : -AG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CC-A-T--G--T-GCGACCTCTCATTC------AAG-ATA---G-TTGAAA-AATTCAGCGCAc
gi|22 : GGTGGAAAACTCGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC--AA-G-TTA----TCAGGACTGTTGAC-TCAA
gi|23 : TATCA-CTTGGCGTCCGACAGGGAGGTGTAATT-T--C
gi|3 : GGTTTCCGGTATCAACAAGGCGTCCGACAGGGAGGGTG-AT------A-CTTTCCTACATTCTTGCTAATCCTCGTAT-T-CATAGA-CGATCTTT-CTATTAGATGATTCAA-AATCT--AAGTTA---AACATTGGGAGTCTTCA-CTAT---TCAAAGC-CAAACCCTA-C-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCCTACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATC--TTCC-AT-T-ATTCC----ATGC-GCTGGCG-ATTTAAACCTTTAATG-TGCAAT-ATTTCATC--GTCTTCTATTT-CATCTAAAAAATGTTTGG-TATATT--CCCCGCTAAAA-AC-ACTCATGCCCTGGCGTCT--GGTAAAAAAAAAAAACTATCCGAA---TC--TTCCAATTTCAATACTATCAACTTT-TGAATTCT--TTA--AACTCT-AAT-TTGA--CCCAGGAAAAAAA--CATATAA-TGCTTGTATGAAAGGACTGACGACAGCAATAT-TTTAAGCTCTTAAAAG---TCCGG-A--AGCCACTTAA-GCCAA-CCATA-ACTGCCGTGCCAAACCTTTATA--AA-AG-AG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATT-ACT--GG-T-GCGA-ATACGT--CGGGCAAAAG-A-----A-T--AGG-CCCTTAACACATTCCA----TTCATTC-ACGAAAACATGCTA-GC----GGGACTGCTCCA-ACAGCCAACTA-AGACAGAACA-TGT-GCCTGAAAGCCT-C-TAGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GACA--TAAAAGATA-A--CTGACAAATTCCCTGGCCGTCCTCTG--C-GAAAACTCA-G---CACAACGTAG-A---AAA--TTTG--CAAAAAACGTAT-ATTCA--TC-AT-TC-T-CTGT--TTCCTACTGT-TCAAT--AGTG--CCACTACTAACAACAC----TATGGGTTT-ATTCAAGAC-ATCGAT-CCCCATACTTTTGAC------C---ATA----GACCT------GC----ATC-----ATGTTcac
gi|4 : gtgATACAATAATCT--GTGTACCGAAATATTGGC-ATTTTCATGCATAAATCAA-GCTCAA-TCCGAAA-CT--GC-GGACG-T-TCT-TCT----TATTTGCGCTTACCTCC-ATAATGGGCTACAAAAGATAGCTCT--AACACA-------AATATA--TAAC-GATT-ATTCC----AAGCAGATGGCGTATTT--ACGTTCAATGCTA-AATAAATCCAACATGTCCT-CATT-CTATCCAAAAA-----GGG-T-CAAAACCAACAC--GACTAC-ATTGA----ATGGCACCTTAGGC---AA--GAATGTTGTTC-AGACGTCGCTCCCAA--GGAATACACACA--TCTATGGAATCTTATTGTGAGCTCCAAATATTGATTCCCAGTAGCAAAAATCTCA-AA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTT--TCGCTAGAAACATCTTCTGTAACA-CTG---AAACCCAAATC----ACTGTC-T-CCAAGC---TATAC-AA-AA-AG--TTGTCC--TACTCATC-A---TA-CTGT--A-GGAA-GCG--AACTGG-T--GC-TGGCGACCTACGA--CG----ACAG-AT----ACTTGAAGAACCTCCTCACATTTCAACACTTCA-TCAGC-AAAACACAACA---A--TGAGCCTCCCCCACGCA---AACA--AGATCGGACA-TGT-G--TGAAAG-TTAT-TAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATTTAAGA---A-A--CTA-TCAATTTGTTGGACG-CCTTTGGTT-G--AGCTAGAA---TAC----TAATT---TAT--CTCAACC--AAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGG--TATAACGA--GAATT--CCTGAATCA--AACAT----CGTGGATTTCATCCAAGAC-AT--AT-CCCTATAA--CTGA-A----AA---ATCT--CAGCCT------GTAATGATA-----CTGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCCTCTGCAACAGTCCCCAAA-GTGGAAAGGTTCTG--AGAGGCAC------CGTA---A----CTGC-TTGACACTtatcatctt
gi|5 : --C--AAAAAG-AT-ATTTC--TT-CA-CC-GACTTT--TTTCT--TAT-AT--C-CAATCTTCCGAACTCA--AACAT----CTTGGCTTT-ATCCATGAC-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCT------CC----ATCAG---CACCTCTTA-CT-C--TA-CCT------ACAATATGGT--TACTT-TCCTC--CAA-A----ATGCATATGGAAAACTTGTGTTAAAGCTTT------CAT---------------TTACACTC-GA------GACGT-CAGCAAAT-GCTTTCAG-AT----ACTTC---------CTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCC-CACAAGCTATATGGAA---AATCC-CTT-CG-AACATCCATGAAATTGAAATTTGT-AAATTTATTATCAA--ATTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GT-G-GC-AACAATTT-CGTCAACACTTTCCAGCACA-TCTC-AACCACCT----GTCT------------AGAAACAGCTGCTTTTC-GAGA-TGCT-TGGTGGGATACGG----TGATT---GA--CTACGATATCGTGCTTAGTGCT--GA-ACTTA-----GTGGTCTCTATCC-TCAGG--ACG---TT-TATCTCT-TTTTACTTGGTGCTAG--ATCT--ATCACAA-A-CGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGAT-ATTCTTAACTTCCGTTTTTTAAAGAGATGT------TAC---TAAG----TAGCAGATTGGTGCAACA-GAC------AGTTGCGTCATAT------CGCCTCTTAATCAATTCC--------------TTTTCCA-GTGTTTAT-TC--TCA--AAAGT---AGT-ACGCT-CTA--GACA----G-----CAACTTAG-----TTAC---CATCTTCTGTAAATACTGATCAGACTTTTTTT---CTTCTTCTTTT--CTTTTGTTT-GTTCGTTTCTTATTATATC---------ATG--------CAC-TT-A-----AATG-----TGTAAT-TGT---CTA-AT--GATTTAATT---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATG
gi|6 : ttacCGAACA-TGT-G--TGAACGTTTAT-TAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTT-GGACG-TCTCTG--T-G--AGCTTG-A---TAC----TAA-C---TATATCTCA--C--AAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCG--TAT-GTGAT-GAATC--CTGATATCA--AACAT----CGTGGATT--ATTCAGGACTATT-ATATCCCATAT-T--GACA----AA---ATA---CATCTT------GT----ATT-----CTGTTTTTA-CT-CATTA-TCT------CGAAAGTGGT--GTCTTCTCTTC--CAA-A----TCAGA-ATGGAAGAGGCCTGTAAAATCCTC------CGTA---A----TCAC-TTACCACTCCGATTATA-GAAAA-CAGCGCAT-GGCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--ATTCCAC----GCAATAATAACGAGATTCTTCTGTGC-AAGTTTATTGTCAA--ATTATGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACTTT--GC-GC-A-AACCCTTTACA--AATGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTGA-CGCT-TGGTGGAAAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC------------------GACTGT---C-TCAAT--ACGA-CTTGTACTCAT-TTATCCTCGGTGCAAGGCACATG-ATATCAG-A-C----TTACCCGATC--ACGATCTTCCAGCA--CTTCAT-CTCTTAAACTTTCGT
gi|7 : ctaCATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCATTGTCATCAA----ATGAGCTCTGAC--TGGATTCCAGATTCC-CAAGGCGTTAGACATGGAGGTGT-TTTGT--CAACCTTTCTATAT-----------TTAGTATATACATAGA-CGGA-TTG-CTACATGA-AATACAA-AATCT--GTGTACG--AATATTGGC-ATTTTCA-GCAT---TTCAAGCTCAAATCC-AACACTTG-C-GGACGATATTTGTTTGCTGTATT-CCACTTAC-TCA-A-AATGGGCTACAAAA--T-ATTCT--AC-ACA-------A-AATA--TACG-A--TTATTCA----ACGC-AATGGCG-ATTT--ACGTTCAATGC-A-AATAAATCCAAT--GTCCTTCATTTCAATCCAAAAA-----AGG--GCAAA--CAACACC-GAC-AC-ATTAA---CATGGCACCT-AGGC---AA--GAATGCTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTT-----------------TTGAT-CCCAGTAGCAGAAT-CTC---------------AAAG----GACGCCAGGCA-----TT--GTGCTTAAACC---TTCTG-AA-AGCTG---AA-CCTAA-TC----ACTGTC-T-CCAAGC---TATAC-AGAAA-AG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACT-G-C--GG-T-GCGACCTACGA--
gi|8 : aagtttgacaccgtatggagaG--A-AATA-GACAA--AAGA---A-AAACT--CCTATTTTTTGACCG-ATTATG--G-G--AATTGG-A---CAC----CAA-A---ACT--CTTG--A--AAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCT--TAT-A-GACAGTCTC--TCTAGATCA--AACAC----TTTGTCTTC-ATACATGAC-GTC-AT-C-----AC-TCT-ACACTTCAA---GTATTTTAAACT------CC----ATCAG---CACATCCCA-CT-C--TA-TCT------ATAACATGGT--TACTT-TCCTC--CAA----------A-ATGGAAAATTTCAGTCAAAGCAGC------AATA---ACAGTTTGCATTTACACTC--A----A-AACGT-CAG---ATCTCTCTCAG-AT----ACTTC---------GTTTCTCCAATTCAATACTAT-TACAGCAGGAAGACCCT-TGTAAGCTATCTGGGA---AATCCAC---TCTAGCATCCATGAAATAGATTTGT-T-AAATTTATTACCAA--ATTGTGGGTTTTTCCTTACTCTTCTTCAGAAT-CTTGTCTCA-TGT--GT-GGTA-AACAATTCATG--AACATTTT-TAGCACA-CCTCGCAACACTCAAAAATCCACACAAACCAGTAGGAACAATTGCTTTTTGGAAA-TGCT-TGAT-GGAAACAT----TTATT---TA--CTATGATATTTTGCTT
gi|9 : tttcttctCGC-CAACACCGCTCTGGAAGCAACTCCACTCACACAATAT-GA-GAGATCTTCCTGGGCTAAGTC-ATTGGTAATAATTATGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATC-C-CTACCT----GTCC------------GGAAACGGCTCTCTTTC-GTGAACGCC-TGG---GGAACCA----TTAGTGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGA-TTA----TCTGGACTAT---CCTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAG-AAC----TTGCC-GATT--ATGATCTTCCTGCAATCTTCAT-CTCCTGAACTTTCGTTTCATTAAGAGATGC------AGC--GCATG----TATCA--------CAA-A-AAC------CTTCGTGTTGCAT------TGTAACTTA--CACTTGT--------------TTTTCTG---GTTTAT-GT--TTA--T-A-T---AGA-AT-TC-CTGT-GATA----A-----TATCC--------TTCT---CATC-ACTAT--ATATCATTT---CATTTATT---CCTCATCAATT--TTTTGG--C-A--CATGTC---------C---------ATA--------CACATTAATTG--AATGCC---TGGTAT-TGT---AT--AT--GA---A--T---atgtcttgaac
blockSeqs : G TA A C A ATTG A AACAAG C G T A CCAG AG ACAA G G A TTTC A T ATTCTTGCTAATC ATA C C TA TA TG T AA CCGA GAG T AAA A T TAG A T A A GCTG T T A T C A GATAGC TA AC ATCATAT A CTATTTAA T CGTGG T A TA AA TGCA T AT T T T C ATGTTTGGTA AACCAA TA T T TGCCC TA AAA AA A G GACG GC TT T AC A TATTGTG CAAATA TT AT A AT . A GACT T CATA AA T ACATC T C T CACTT A A TGCG GTG CTT TT GA . AA CC A G CTCT T CT T AA AC CT A G CGGGCA C ACTTGAAGAA G CT T A G A TG ATGCAAT G C GCCA TA A A G CC C G C CA A ACC A CA T T TATT GAT G AA GA C TC A GTT AA T GATT AACG AAGGTTT GCAA A G TTCACA G GG TAC ACCAAG TT A AC ACTC T C TC T T CG AT C CTCTACACTTC ACC TTTT GCCTTCAGCACC G T CCA C CGTGAAGA G GG C TG CAGTCCCCAAA C C G AATGAACACATCTATCAT T C TTATA TC A C A C CCCG GACTTACGA A A A G A C A A C AA GCA A ACTCACAC CT T GAAA T A TAA TC T T A AA T A TT TA CAAC AA G TC T C G C G AAAA ACACAAACCAGT G T G A A C TCGCAG G GAG AC A T G TTGAACTTAGCGGTCT TGA C AGT AA A T A T T G GG A C A GCTA C TG A TT G AAT A A T GTC G TACATAAGAGCATGCCATTAATATTAAAACA ATGACT A ATCAA T . TGT TGTAA GGTAATT CC CCA TA TGCTATATTTAGCTAGAT A AAC TT AAATA CAGACTT AGA G TT TT TTTTATT CTTATTACAGAATGTGCGTTACTTGTAATGATAAT G CTCATA TT TTTAATT CCATG TC C C AT
blockSeqs : . . . TG C . C . . C AT AG CAA G T . TGT . G AC T . . T TA G . . CG AG . . A T GAA . T . A . . T C . T T AGT . G . . ATAACGAT . C C . G . TGC T . T G T T TGGTTG TCCC T . . CA T . AA A . A . . T . . TTA TAAT T T T A . T . C CAG . T AG . C G TT . . ATA G . T T . C . . G ATC A . . . GG . . . GCA . ATACGTTTA A AC . . . A TG AGC T . C A G . . . C A . . C . A . . . CAA . . . A C A C TT . C AA . CTATAT AACC T . TGTCAC . . T AACGAG . T . . A G T A . C T A CTTTTGAC . GT CCTTCAGCACC C . CA . AC G . C . ATGCATC G T A AATAACAGTTTGCA G C A T A . A . . . C C A . A C . C G TA T T CTTCG CC T GAAA T T T TC T T A T T A . T GTA CC A C T C . C . . . G T . A . . AG G GAA . A C A GAGATTATCTG ATC . G A G C . T T G G A . . TA C TG A TT G A A . T TTT G AGCAAGCTTTGGTGCAAACGACAGTTGGC C C CAC C . GT TC AAATGTA A GCT T GCAACTTAG T . TT ATA GTAC . T AT . TTTGTT ATGTCTGGTGACACAGTGTTCAAA . ATGT . TTTAATT GT . T . AT
blockSeqs : . CTT G T . TT . G AT T . . T AT C . . A CA . . A T TA . T . A . . T . . C T TAG . G . . CTTCCAT . A T . G . TGC T . C T C C TGTTG ACAA T . . C A . . T . A . . A . . T . . . T . . C . G TAT . G CC . C G CA . . . T . C A . . . . C TAG T . . . A . . . CAG . AGTTGAAAA A AC . . . A CA AA G . T . G . . . C A . . . . G . . . AAT . . . . A C T C . A G . TTTAT CC C . TCAT . . G GTGATG . A . . G A T A . C T A CTCTTCA . TC GTAATGATACT G . C . AC G . C . AATGCAT C A T CGTAACTGC T . . A C . T . . . G T T . A A . A T GT . A ACTCT TA C CTTC G . A AG A G C T T A . C CGA AA A . G G . A . . . T A . T . . GG G GAA . A T G AAGTTATCAG . . G . G A . T A . . T . . . C . T . A . T . T TTC G TACTAAGTAGCAGATTGGTGCAACAGACA . C CA C . GT TC AAAGT T CG T GCAACT A . TT AA CCCC . T TT . TTTG CTTATTATATCATGCACTTAAATG . CTA . GTATG AT . T . AA
blockSeqs : CAA G G . TT . C T T . . G C A . . A CA . . A . TA . T . C . . T . . C . AGT . C . . CTTTCAA . C T . A . TGC . . C C C C GGGT TCC C . . A . . . T . C . . A . . . . . G . . G A . . G TG . . . T . C G . . . . A TT A . . . G . . . CAC . TTTCCAG . . . . . . . A C . A . . . . . T A . . . . . . . . CAA . . . . A T C T . T A . AAAA AC C . TTCA . . T AGACAG . A . . T C T T . C C C CTCTTC . T CCATCAGCA C . C . AC T . . . AATGCAT G C T CGTAATCAC A . . T . . A . . . C C A . . C . C G TA . C TTCG CC T GATT G . A CT T T A A . . . T GC T A . T T . C . . . G T . A . . CT A G . A C T GAACTTAGTG . . T . . A . . A . . T . . . . . T . T . T . A TT . AGCGCATGTATCACAAAAACC . . TA G . . GT TAT A TC . ATATCC C . A AC TCAT . A AA . TTTA CCATACACATTAATTGAATGCC . CTA . TT AT . . . AT
blockSeqs : TT . T . TT . C T T . . . . . . . . . TA . T . T . . G . . T . TAT . G . . CTTCCAT . C A . A . TAA . . C T . . AGGG TCC . . . . . . TG . . . T . C A . . . . G CT T . . . T . . . TTC . ATAGGC . . . . . . . . . CA . . . . C A A G . G A . AACT GA G . TTAC . . G TCAAT . T . . G A C G . T C A ACTGAA . T CCATCAGCA T . . . CG A . . . ATCAGA T . G CAT T G . . C GC . . ACGC G . TTCC G . A AG A G C T . . . T CA C . . G G . A . . . C C . T . . AT T . . T T G . . . G . . . CA ATGTACTTAAATG . AT . AT
blockSeqs : TT . G . . AA . . . . A . . . . TG . C . . ATACGA . A C . . . AA . . . . . . . A . . . . G TA G . . . A . . . CG . . . AACA . . T ATCC . G . . T C . T . C T . CTCTTC . C GCATCAT C . . . AT C . . . A CA T . . . . T
blockSeqs : . . . . . TA G . . . G . . . . . C . TTGACA . . GTATTCT
blockSeqCons : AT*********** T** CA** *** TA* CTTCCGA**** TGC* NGGTTG***** C**** ** ATTTANAA****** AG***** C** ACGCAT****** ****** *** ACTCG*** A** CGA* A* G* ** A** TTC GCGCAGAGCAGGTTGGTGCAAAAACA*********************** CA*** ************** GT* NAAT****** GCANCT***************** NCAC*** NT TTTGTT* NTA**** TTATT***** AT*** AT
originalCons : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTAC---AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTAAC-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATC--TTCC-A--T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTG-AATAAATCCAAC--GTCCTTCATTTCCATCCAAAAA-----NGG-TGCAAN--CANCGCC-GAC-AC-ATTAA---CATGGCGCCT-AGGC---AAAAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-AT----G-TTGAAG-ACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTATGCA--TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CT-CATTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A----NCGNA-ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGATTATA-GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCAC---CGCAACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGT------AGC--GCATG----TAGCA--------CAA-A-GAC------CGTCGTGTCGCAT------TGTAACTTA--CACTTNT--------------TTTTCCG-GTGTTTAT-GT--TCA--TAA-T---AGA-AT-CC-CTGT-GATA----A-----TATCT--------TTNT---CATCTTCTGT--ATATTATTC---CNCTTTTC---CCTCNTCATTT--CTTTTGTTT-A--CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGT---ATA-AT--GA---A--T---TCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
finalCons : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTATT--CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCT--GTGTACA--AACATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTA-C-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATCTTCCGA----T-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTGC-ATAAATCCAAC--GTCCTTCATTTCCATCCAAAAANGGTTG-----CAAN--CANCGCC-GAC-AC-ATTAAC----TGGCGCCT-AGGC---AA--GAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-ATATTTANAA------CCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTAG-----TGGGCCTNCCCCA-ACA---AACT--AGATCGGACA-TGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--T-G--AGCTCG-A---TAC----TAA-N---TAT--CTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CTC--TTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAAACGCAT------ATGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCGA------GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCACTCG---AACATCNACGAGATTNNNCTNTGC-AAGTTTATTATCAAA--TTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNGA-CGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---C-TCAAN--ACGA-CTTGTATTCAT-TTATCCTCGGTGCAAGGCACATG-ATCTCAG-A-C----TTGCCCGATT--ACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGATGTGCGCAGAGCAGGTTGGTGCAAAAACA-----------------------GTCGTGTCGCAT------TGTAACTTACA---TTNT--------------TTTTCCGGT-GTTTAT-GT--TCANAAT------AGA-AT-CC-CTGT-GATAGCANCT-----------------TTNT---CATCTTCTGT--ATATTATTNCAC---TTTTC---CCTCNTCNTTT--CTTTTGTTTGTT-CATTTC---------C---------ATG--------CACATT-ATT---AATG-----TGTAAT-TGTNTA----AT--GATTATT-----TCTTTAT---TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC
Alignments
lowQualScore : 11 1 222222 333333 222222 11 1111 1 3333333333333 111 1111 111 111 1111 1 1 111111 1111111 111 1 11111 1 1111 11 11 222222 11 33333 1111 11 11 11 2222222 111111 11 22 11 1111 1111 11 22222 11111 2222 111 11 111111 22222222 22222222222 2222 1111 11 11 1 111 1111 111 11 11 11111 1111 2222 111111 11111111 11111111 1111 2222222222222 2222 2222222222222222222222 222 11111111 1 44444444444 22222222222222222222222 3333333333333 1111 333333333 2 1 222 1 1 1 11 11 1111 333333333333 111111 111 222222222222222222 333 111 11 1 11 1 2222 22 11 222 99999999999999999999999999999999999999999999999999999999999999999999999999999999 111 11111 5555555555555555555555555555555555555555555555555555 111 44444444444444444 111 111 111111 6666666666666666666666666666666666666666666666 22 3333 11 1 11 1
lowQualScore : 1 88 7 3 0 7 666666 1 888888 6 6 7 0 3 555555 88 0 0 0000 4 0 1 5 99999 3 0 1 2222222222222 777 6 8 88 99 99 6 6666 6 111 6 888 3 7 22 5 5 5 0 5 1 4444 5 1 1 5 8 5 0 555555 77 66 8888888 5 4 666 2 1 22222 4 5 0 88 77 0 0 5 0 5 77 1 3 8 1 33 8888 2 6 77 22 33 6 6 888888 44 11111 1 8 5555 11 11 1 11 8 0000000 0 000000 33 33 1 11 8 3 0 7777 1 6666 11 3 00000 6 2 2 11111 6 6 5555 888 000 77 66 5 11 0 66 0 5 3 888888 1 66 0 5 66 999 66 5 5 0 0 22222222 5 33333333333 444 0 3 33 8 8 8 4 5555 1 8 5555 99 3 6 6 99 3 1 6 11 6 0 444 6 99 6 6 5555 111 6 99 55 1 77 1 55 99 6 44444 4444 8888 111111 0 6 5 44444444 5 77 999 88888888 77 1 77 2222 3 11 5 1 5 55 66 6 9999999999999 888 3333 9999999999999999999999 1 5 333 5 77777777 1 77 1 77 5 66666666666 1 3 1 77777777777777777777777 1 7777777777777 99 3 8 0 1 8 7777 222222222 1 1 1 0 0 0 1 6 6 1 22 555 7 3 3 6 1 2 4444 1 3 0 99 1 22 1 1 2 77 5 7 99 77 9999 00 1 55 1 1 6 1 6 4444 444444444444 1 1 6 1 6 6 444444 1 222 77 8 4 3 555555555555555555 000 000 88 3 1 8 3 1 0 0 88 1 6 8888 22 1 11 1 111 1 8 1 77 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 888 66666 6666666666666666666666666666666666666666666666666666 1 444 55 22222222222222222 444 1 1 6 555 555555 6666666666666666666666666666666666666666666666 6 1 00 4444 5 11 6 11 4 6 11
lowQualScore : . .. . . . . ...... . ...... . . . . . ...... .. . . .... . . . . ..... . . . ............. ... . . .. .. .. . .... . ... . ... . . .. . . . . . . .... . . . . . . . ...... .. .. ....... . . ... . . ..... . . . .. .. . . . . . .. . . . . .. .... . . .. .. .. . . ...... .. ..... . . .... .. .. . .. . ....... . ...... .. .. . .. . . . .... . .... .. . ..... . . . ..... . . .... ... ... .. .. . .. . .. . . . ...... . .. . . .. ... .. . . . . ........ . ........... ... . . .. . . . . .... . . .... .. . . . .. . . . .. . . ... . .. . . .... ... . .. .. . .. . .. .. . ..... .... .... ...... . . . ........ . .. ... ........ .. . .. .... . .. . . . .. .. . ............. ... .... ...................... . . ... . ........ . .. . .. . ........... . . . ....................... . ............. .. . . . . . .... ......... . . . . . . . . . . .. ... . . . . . . .... . . . .. . .. . . . .. . . .. .. .... .. . .. . . . . . .... ............ . . . . . . ...... . ... .. . . . .................. ... ... .. . . . . . . . .. . . .... .. . .. . ... . . . .. . ................................................................................ . . ... ..... .................................................... . ... .. ................. ... . . . ... ...... .............................................. . . .. .... . .. . .. . . ..
lowQualScore : 0 55 3 3 7 3 000000 0 333333 7 7 3 7 7 333333 00 3 7 0000 3 7 3 7 77777 3 3 0 5555555555555 777 7 0 66 88 44 7 2222 7 333 7 333 2 3 66 7 7 0 7 7 0 2222 7 9 4 7 9 7 7 444444 99 77 6666666 7 3 111 7 4 99999 0 7 7 00 99 7 4 0 7 7 99 7 6 9 0 55 0000 2 7 77 33 00 7 7 000000 00 00000 4 0 0000 00 00 4 00 0 5555555 8 555555 22 88 2 22 0 2 6 0000 0 8888 00 2 00000 7 5 5 88888 7 7 8888 333 000 44 11 0 99 9 99 4 0 4 222222 0 99 9 0 99 111 99 0 0 2 2 77777777 7 55555555555 222 7 8 88 0 0 0 0 4444 0 0 0000 00 2 7 7 22 7 7 7 00 0 8 000 4 22 7 7 2222 777 7 22 88 0 77 0 88 22 3 33333 2222 5555 555555 7 6 7 44444444 7 99 111 00000000 99 0 99 1111 0 11 7 0 0 22 11 1 8888888888888 888 0000 2222222222222222222222 7 7 666 7 77777777 7 99 4 99 7 00000000000 0 3 0 55555555555555555555555 0 2222222222222 44 8 0 6 4 0 0000 000000000 0 4 4 6 0 6 0 7 7 0 00 000 5 2 5 7 0 2 0000 0 3 3 22 8 00 0 0 5 77 5 3 22 33 3333 00 7 88 0 0 7 0 7 2222 222222222222 0 0 7 0 7 7 111111 7 666 99 7 0 0 222222222222222222 000 222 66 2 0 0 8 4 0 6 00 4 0 0000 00 4 22 4 666 4 0 0 88 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444 0 8 666 00000 2222222222222222222222222222222222222222222222222222 0 000 22 88888888888888888 000 0 0 7 888 000000 2222222222222222222222222222222222222222222222 7 0 55 4444 6 00 0 00 0 0 88
consensus : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCTGTGTAC--AAA-CATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTA-C-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATCT-TNCGAT-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTGCATAAATCCAAC--GTCCTTCATTTCCATCCAAAAANGGTC--GTA-A-NCANCGCC-GAC-AC-ATTAA----CATGGCGCCT-AGGCAA---AAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-ATA-T----TT--ANAACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCNA---ACGGGCCTNCCCCA-ACA---AACT--AGATCGGAC-ATGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--TG--AGCTCG-A---TAC----TAA---NTATCTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CTC--TTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A---CGCAN-A-TGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCG-----A------GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCACTCGAACA-TCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNG-ACGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---CTCAA--TACG-ACTTGTATTCAT-TTATCCTCGGTGCAAGGCACAT-GATCTCAG-AC----TTGCCCGATTTGACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGAT---G-T-A-CGCA-G-AGCANGC--TTGGTGCAA-A-GACA------GTCGTGTCGCATC-----TGTAACTTA--C-A-TTNTTTTTCCG-GTGTTTAT-GT--TCAN--AA-T---AGA-AT-CC-CTGT-GA-TA-GC-------A----NCT----TTNT---CATCTTCTGT--ATATT-ATTN-AC--TTTTC---CCTCNTCNTT-T--CTTTTGTTT-G--TTCATTTC---------C---------A-TG-CACATT-ATT---AATG-----TGTAAT-TGTNTA-ATGATTTAATTTCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
Reference ( family-1202 ) : CATNATCTATAATGTACAAGCTACATCA-ACTCGGAATATCGGATCGTACATGT-TGTAGACTTTAATCAATGATTGTCATTCCNA------CACATTGTTCTCTGTCATCGTCGTCAACCA-GTGAGCTCTGACAGTGGTTTCCGGTATCA-CNAGGCGTCCGACAGGGAGGTTT-ATT-T--CA-CTTTTCTATAT-----------CTCGTAT-T-CATAGA-CGAT-TTT-CTATNNGA-GATACAA-AATCTGTGTAC--AAA-CATTGGC-GTTTTCA-GCAT---TCAAAGCTCAAACCCTA-C-CTTGGC-GGACGATATCTGTNT----TATT-GCTCTCAC-TCC-ACGATGGGCTCCAAAA--T-GNTCT--AN-ACA-------A-CATCT-TCCGAT-ATTCC----ACGC-GCTGGCG-ATTT--ACGTTCAATGCTGCATAAATCCAAC--GTCCTTCATTTCCATCCAAAAANGGTT--GCA-A-NCANCGCC-GAC-AC-ATTAA----C-TGGCGCCT-AGGC-----AAGAATGCTATTC-AN---TC--TTCCAA--GGAATACAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CTCA-AA-TGCCTGCATGAAAG----GACGCCAGNCACAT-TTT--GCGCTTAAAAC---TTCTG-AACAGCCG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AA-AG--TTGTTC--TACCC-TCGA---TA-CTNT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-ATA-T----TT--ANAACCTCAGCGCATTTCAACACTTCA-TC-GC-AAAACACGCTA---GTGGGCCTNCCCCA-ACA---AACT--AGATCGGAC-ATGT-G--TGAAAGCTTAT-TAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GACAATTAAGA---A-A--CT--CCAATTTTTTGGNCG-NCTCTG--TG--AGCTCG-A---TAC----TAA---NTATCTCG--C--AAAACGCAT-ATTCC--TT-AC-CC-GACTTT--TTTCT--TAT-ACGAC-GAATC--CCGANATCA--AACAT----CGTGGNTTT-ATCCANGAC-GTC-AT-CCCCATAC-TCTGACA----AA---ATA---CAACCT------GC----ATC-----CTGTTCTTA-CTC--TTA-TCT------ANAAGGTGGT--TACTTCTCCTC--CAA-A---CGCAT-A-TGGAAAANTTCTGTNAAAGCCNC------CGTA---A----TCGC-TTNACACTCCG-----A------GACGT-CAGCGNAT-GCTTTCAG-AT----ACTTC---------CTTTNTCCGATTCAACACTATGTACAGCAGGAAGACCNC-CAACANCGNTCTGGAA---ANTCCACTCGAACA-TCNACGAGATTNNNCTNTGC-AAGTTTATTATCAA--ATTATGGACCCTTCNNGACNCTCCNCCCGAAN-CTTGTCTCACTGT--GC-GCGA-AACCNTTTACG--AACGTNTTCNAGCACG-TNTC-CACCACCT----GTCC------------GGAAACGGCTNCNTTTC-GNG-ACGCT-TGGTGGGAAACNN----TGATTGAAGA--CTACGACATCTCGCTTGGCGCC--GA-A-TTA----TCTGGACTGT---CTCAA--NACG-ACTTGTATTCAT-TTATCCTCGGTGCAAGGCACAT-GATCTCAG-AC----TTGCCCGATT--ACGATCTTCCGGCA--CTTCAT-CTCCTNAACTTTCGTTTCTTTAAGAGAT---G-T-G-CGCA-G-AGCAGG---TTGGTGCAA-A-AACA------GTCGTGTCGCAT------TGTAACTTA--C-A-TTNTTTTTCCG-GTGTTTAT-GT--TCAN--AA-T---AGA-AT-CC-CTGT-GA-TA-GC-------A----NCT----TTNT---CATCTTCTGT--ATATT-ATTNCAC--TTTTC---CCTCNTCNTT-T--CTTTTGTTT-G--TTCATTTC---------C---------A-TG-CACATT-ATT---AATG-----TGTAAT-TGTNTA-ATGATT--ATTTCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATGA
gi|1 : CATTATCTA--ATGTACAAGCTACATCA-ACTTGGAATATCGAATCGTACATGTATATAGACTTTAATCAATGATTGTCATTCCTA------CA--TTGTTCTCTGTCATCATTGTCAATCAAGTGAGCTCTGAC--TGGTTTCCAGTTTCC-CAAGGCGTTAGACAGGGAGGTTT-TTA-T--CAACCTTTCTATAT-----------TTAGTATATACATAGA-TGGT-TTG-CTACATGA-AATACAA-AATCTGTGTAC--TAA-TATGGGC-ATTTTCA-GCATA--TCA---CTCAAATC--A-C-TT--GC-GGACAATATCTGCTG----CATT-ACACTTAC-TCC-A-AATGGGTTACAAAA--T-AATCT--AC-ACA-------A-AAT-------AT-ATTCA----AAGC-AATGGCG-ATTT--ACGCTCAATGC-AAATAATTTCAAT--GTCCTTCATTTCTACCCAAAAAGGG-----CA-A-ACAACACC-GAC-AC-ATTAA----CATGGTACCT-AGGC-----AAGAATGTTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTTATTG--AACTCCAAAT-TTGAT-CCCAGTAGCAGAA--CCCA-AAATGCCTGCATGAAAG----GACGCCAGACATGC-TTT--GCACTTAAATC---TTCTG-AACAGCTG---AA-CCCAA-TC----ACTGTC-T-CCAAGC---TATAC-AG-AATAG--TTGTTC--TACCC-TCAA---TA-CTGT--ATGGAA-GCG--AACT-G-T--GG-T-GCGACCTACGA--CG---AAAAG-ATG-T----TG--AAAACCTCAGCGCATTTCAACAATTCA-TA-GC-AAAGCACACGATGCATGGGCCTCCCCCA-GCA---AACT--AGATCGGAC-ATGT-G--TGAAAGTTTAT-AAGGTCTT--CTT-TCTATCA---TCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAATTTTTTGAACG-TCTCTG--TG--AGCTTG-A---TAC----TAA---CTATCTCA--C--AAAACACAT-ATTCC--TT-GC-CC-GACTTT--TTTCG--TAT-ATGAT-GAATC--CTGATATCA--AACAT----CGTGGACTT-ATCCAGAAT-ATT-AT-ACCCATAT-T--GACA----AA---ATA---CAATCT------GT----ATC-----CTGTTTTTA-CTCA-TTA-TCT------TGAAAGCGGT--GTCTTCGTTTT--CAA-A---C-CAG-AATGGAAAAGTTCGGTAAAACCCTC------CGTA---A----TCAC-TTACCACTCCG-----ATTATAGGACAA-CAGCGCAT-GGTTGCTG-AT----CCCGA---------CTTTGCTCGATTTATCACTCTGTAT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--AGTCCACGC-AATA-TTGACGAGATTCTTCTTTGC-AAGTTTATTTTCAA--AT---GGACCCTTCAGGATATTCCGCCCGAAA-CTTG-CTCACTTT--GC-GCGA-AACCCTTTACA--AACGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTG-ACGCA-TGGTGGGGAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGTGCC--GA-A-TTA----TCTGGACTGT---CTCAA--TACG-ACTTGTATTCAT-TTACCCCCGGTGCAAGGCACAT-GATCTCAG-AC----TTACCTGATT--ACGATCTTCCAGCA--CTTCAT-CTCCTAAACTTTCGTTTTAATAACAAATTTCG-T-GTTACA-T-TGTAAT---TT-----------AC--------TCTTGTT-CATC-----TGT-GCT--------TTGT-TTTCTG---GCTTAT-GT--TCAT---A-T---AGA-AT-TC-CTGT-GATTA-TT-------ATTTGTTT----TTCT---CATCCACTAT--AT-TT-ATTT-A---TTTTC---CCTCATGATTAT--------TTT-G--CACATTTC---------C---------A-TA-CACATTAATT---AATGCAC--TGTATT-TGTAT--ATGA----AT---TGT--ATATGTT--AATGAAATCTCCATAT-GGAGGAA--GAAGAAAGAAAGA
gi|10 : TTCTTGACTTTTGCGTCTTTAA-AGAT---G-TTA-CATAAG-AGCATGCCATTAATATTA-A-AACA------GTTGTACCATATATGACTTGTAAACTA--C-A-TCTTTTTTGTGTGTGTTTATTGTAATTAGGTAA-TT--AGCCAT-CCACTGT--A-TATGCTATATTTA----GCTAGATTTAT---CATCTTCTGT--A-ATT-ACTGTAC--ACTACAGACTTCGTCTTT-TTTCTTTTGTTTTA--TTCATTTC---------TTATTACAGAA-TG-TGCGTT-ACTTGTAATGATAATTGTAAT-GGTCTC-ATAATTTAATTTCTTT--GT-TGTA--CATGCAATCTCCA-CTGGGAGGAAATAAAGAATGAATGA
gi|11 : tctttttctactatgtgctagaacactcacaaaaactatcactcaatatgacagactcagcttgtattaGTTTCCGGTATCA-CAAGGCGTCCGACAGGGAGGTGT-ACT-TTCCA-CATTCTTGTAC-----------CTCGTAT-T-CATAGA-CGAT-CTT-CTATTAGA-GATTCAA-AATCTAAGTTT--AAA-CATTGGA-GTCTTCA-ATAT---TCAAAGCTCAAACCCTA-C-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCC-ACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATCT-TCCATT-ATTCC----ATGC-GCTGGCG-GTTT--ACCTTTAATGCTGCA-AAATCCAAC--GTTCTTTATTTTCAT-CAAAAAT-GTT--GTA-A-TC-CCGCT-GAA-ACTCTCAG----C-TGGCGTCT-TGGTAA---AAAAAAACTATCG-AA---TC--TTCCAA--TTCATACAATCA--TCT-TGGAA
gi|12 : G-AACATCTT---AA-CCCCA-TG----ACTGTT-G-CCTAAC---TTTATTAT-AA-AA--TCGTCT--AATTA-TTGG---TT-ATTT--ATGGGA-GCG--AATT-A-T--GGAT-ACGATCTTCGG--GC---AAAAG-GTA-TACGTTT--AT----TTAATATATTCCGGCCTTTCA-TC-GC-AAAACATGCTA----CGGGACTGCCCCA-ACA---CTCTTAAAAGCAGAC-AGGTGG--CAAAAGCCTGTCTAGG
gi|13 : TAAAAACTAT-TCACACTCGTAATATCGG----CACA-AT-TGTAGTCGTTTATAAATGATTGTCACTCCAAAACAAGCACATT--TCTC---CATTGTAGTTAACCA-G--ACCACTTATAGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGA-atcccgaccagttacagcagagacgaatgcaagaattgcgcagattatgaccgtcggctgtggaacgtcaacacaagcgta
gi|15 : attatAATTCTAGC-CTTGGC-TTATGACATCTGTAT----TATT-GCTCTCACATCC-ATGAAGAGC-CCGACA--T-AGCCTTAAG-ACAATCATATA-CATCTATTTAAT-ACTCCGTGGACTC-GCTGGCG--TTT--CCGGTAACTGCTGCA-AAATTCAAT--GTTTTGTATTTTCA
gi|16 : -AA-TGCATGCAGAAAAG----GACAACATTCACAG-TCT--GCTCTTAAAA-------TA-AACGGACA---AA-TCAAT-TCTGCGACTTTA-T-CCAAGT---TTTAT-AA-AT-GGC-TTATTC--T-TCC-TGGAA--TC-TTAT--ACGGAA-GCG--AACT-G-T--GG-T-GTGATATCAGA--CA---GAAAG-ATG-T----ca
gi|17 : ATT-GCTGTCAC-TCC-ACGA-GAGCTCAAAAA--T-G-TGT--AC-ACA-------A-CATCT-TTCAAT-ACTCA----GTAC-GCTAGTG-GTTT--ACCTTTAATGTTGCA-AAATCCAAC--GT-TTTTATTT-CATC--AAAATGGTT--GTA-A-TC-CCGCT-GAC-AC-ACT
gi|18 : AGTGGCTTCCAGTATCA-TT-GGC-TCCGACATGGAGGTTT-ATT-T--CA-CTTTTGTAT-T-----------CTCGTAT-T-CATAGACCGAT-CTTACTATC--A-CACACA------TGTG-----AAATCA---------TTCA-ATAT---TCAAAGC-CTAACCCTA-C-CTTGCCAGAATGATATcagct
gi|19 : tTCTTCATT-T--CTCTTGTTT-GCATTTATGTC---------T---------GGTGACACAGT-GTT---CAAA-----TGTAATGTGTATGTATTAGT--ATGTTTTTCCATGTGTTTCCAT---ATCTCCACATGG-AGGAAATAAAGAAGGAATGA
gi|2 : atttGT---TATAC-AG-AA-AGAATCGT-C--TTCCT-TCCA---CT-CTTTCTACGGATTGTG--AACT-T-TCTGG-T-GCGACTTACGC--CA---CCAAGCAT--T----TT--CCAGCCTCAGTACTCTTCAACACTTTA-TT-GC-AAACTATGCAA---TTGGGCTTTACCAA-ATA---TACT--A-ATCTGACAATTT-G--TTGAAGCTTAC-TTGACATC--TTT-TCGATTC---TT-CTG--A-ATTCTGACAA--AAGA---AGA--CT--CCAATTTTTTGGCCG-ATTATGT-TG--AGGTTG-GATTTAC----CAAAAGGTTTCTAC--C--AAAAAGATT-ATTTC--TTCACACC-GACTTT--TTTCT--TAT-ACCAA-GTCTC--CCGAACTCA--AA-ATACTCTTTGGCTTT-ATCCATGAC-GTC-AT-TCTC-TAC-TCTT-CA----AGACCATAG--TAACCT------GC----CTTCAGCACCGTCGTTA-CT---TTACTCT------ACAAGATGAT--TACTTCTCTTC--CAA-A---TGCATCA-TGGAAAACTTGTGTCAAAGCCGCAATGAACACATCTA----TCAT-TTTACACTCCG-----A-------ACGTCCAGCGAAT-GCTTTCAGCAT----ACTTC---------CTTTATACAGTTCAACACTAT-TACAGCAGGAAGACCCCACAA-GCTAATATGGAA---A-TCC-TTCGAACA-CCTATGAAATTGAAATTTGCAAAATTTATTATCAA--TTTATGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GTAGCAACAA--TTTTGTGC-AACATTTTCCAGCGCA-TCTC-AACCACCT----GTCT------------AGGAACAGCTGCTTTTC-GAG-ATGCTCTGGTGGGTTACAG----TGATCG--GA--CTACGATATCGTGCTTAGTGGCTTGA-ACTTAGCGGTCT---CTAT---CCCAG--GACG--TTTATCTTTTT-TTA--CTTGGTGCTAG--ATCT--ATCACAACACTA--TTGCTCAATTTGACGGAC--CCGGC---CTACATATTTCTTAATTTCCGGTT-TTTAAGAGAT---G-T----------AGCAAGCT-TTGGTGCAA-ACGACAGTTGGCGTCATGTCGCCTC-----TTTAA--TA--T-A-TTCTTTTTCCA-GTGTTTAT-TC--TCAA--AA-TGTAAGA-AA-CG-CTCTAGA-CA-GC-------A----ACT----TTTTAACCATCTTCTGT--AC-TT----------TTTCC---CCTTCTCTCT-T--CTTTTGTTT-A--T--ATT---------------------A-TG-TAC-TT-A-----AATG-----TGTAAT-TGTCTA-ATAATTTAATTTCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAAAAAAGAAAGAAT
gi|20 : gtatcgcgg-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCTCCTTCAGC----ACC---------TCTTA-CT---TTA-TCT------ACAAGATGAT--TACTT-TCCTC--CAA-AA--TGCAT-A-TGGAAAA
gi|21 : -AG--TTGTTCCCTATCC-TTAA---TAGCTAT---TAGAA-ACG----CC-A-T--G--T-GCGACCTCTCATTC------AAG-ATAGT----TG--AAAAATTCAGCGCAc
gi|22 : GGTGGAAAACTCGCAGTGATTGAGGA--CTACGACATTTCACTAGGCACC--AA-G-TTA----TCAGGACTGTTGACTCAA--
gi|23 : TATCA-CTTGGCGTCCGACAGGGAGGTGTAATT-T--C
gi|3 : GGTTTCCGGTATCAACAAGGCGTCCGACAGGGAGGGTG-AT------A-CTTTCCTACATTCTTGCTAATCCTCGTAT-T-CATAGA-CGATCTTT-CTATTAGATGATTCAA-AATCTAAGT-T--AAA-CATTGGGAGTCTTCA-CTAT---TCAAAGC-CAAACCCTA-C-CTTGGC-AGATTATATCTGTAT----TATT-GCTCTCAC-TCCTACGA-AAGCTCCAAAA--A-GTTCT--AG-ACA-------A-CATCT-TCCATT-ATTCC----ATGC-GCTGGCG-ATTTAAACCTTTAATG-TGCAATATTTCATC--GTCTTCTATTT-CATCTAAAAAATGTTTGGTATATTCCCCGCTAAAA-AC-ACTCATGCCC-TGGCGTCT--GGTAAAAAAAAAAAACTATCCGAA---TC--TTCCAATTTCAATACTATCAACTTT-TGAATTCT--TTA--AACTCT-AAT-TTGA--CCCAGGAAAAAAA--CATATAA-TGCTTGTATGAAAGGACTGACGACAGCAATAT-TTTAAGCTCTTAAAAG---TCCGG-A--AGCCACTTAA-GCCAA-CCATA-ACTGCCGTGCCAAACCTTTATA--AA-AG-AG---TGTT---TACCA-TCGGCTCT--CTTT--ATG--A-GCGAAAATT-ACT--GG-T-GCGA-ATACGT--CGGGCAAAAG-A-A-------T--AGGCCCTTAACACATTCCA----TTCATTC-ACGAAAACATGCTA---GCGGGACTGCTCCA-ACAGCCAACTA-AGACAGAAC-ATGT-GCCTGAAAGCCT-C-TAGGTCTCCACTTACCTA--A---TCACAGCAA-GATC-GACA--TAAAAGATA-A--CTGACAAATTCCCTGGCCGTCCTCTG--CGAAAACTCA-G---CACAACGTAG---AAAATTTG--CAAAAAACGTAT-ATTCA--TC-AT-TC-T-CTGT--TTCCTACTGT-TCAAT--AGTG--CCACTACTAACAACAC----TATGGGTTT-ATTCAAGAC-ATCGAT-CCCCATACTTTTGAC------C---ATA----GACCT------GC----ATC-----ATGTTcac
gi|4 : gtgATACAATAATCTGTGTACCGAAA-TATTGGC-ATTTTCATGCATAAATCAA-GCTCAATCCGAA-A-CT--GC-GGACG-T-TCT-TCT----TATTTGCGCTTACCTCC-ATAATGGGCTACAAAAGATAGCTCT--AACACA-------AATATAT-AACGATTATTCC----AAGCAGATGGCGTATTT--ACGTTCAATGCTAAATAAATCCAACATGTCCT-CATT-CTATCCAAAAAGGGTC--AAA-A-CCAACAC--GACTAC-ATTGA----A-TGGCACCTTAGGC-----AAGAATGTTGTTC-AGACGTCGCTCCCAA--GGAATACACACA--TCTATGGAATCTTATTGTGAGCTCCAAATATTGATTCCCAGTAGCAAAAATCTCA-AA-TGCCTGCATGAAAG----GGCGCCAAGCACATATTT--TCGCTAGAAACATCTTCTGTAACA-CTG---AAACCCAAATC----ACTGTC-T-CCAAGC---TATAC-AA-AA-AG--TTGTCC--TACTCATC-A---TA-CTGT--A-GGAA-GCG--AACTGG-T--GC-TGGCGACCTACGA--CG----ACAG-ATA-C----TTGAAGAACCTCCTCACATTTCAACACTTCA-TCAGC-AAAACACAACA---ATGAGCCTCCCCCACGCA---AACA--AGATCGGAC-ATGT-G--TGAAAG-TTAT-TAGGTCTT--CTTCCCTATCAACCTGACGG--ATGA-C-GATATTTAAGA---A-A--CTA-TCAATTTGTTGGACG-CCTTTGGTTG--AGCTAGAA---TAC----TAAT--TTATCTCAACC--AAAACGCATGATTCCTGTC-AC-CCGGACTTTGGTTCGG--TATAACGA--GAATT--CCTGAATCA--AACAT----CGTGGATTTCATCCAAGAC-AT--AT-CCCTATAA--CTGA-A----AA---ATCT--CAGCCT------GTAATGATA-----CTGTTGTTGTCTCCATTA-TTTCGTGAAGAAAGGTGGTGGTAAGTCCCCTCTGCAACAGTCCCCAA-AGTGGAAAGGTTCTG--AGAGGCAC------CGTA---A----CTGC-TTGACACTtatcatctt
gi|5 : --C--AAAAAG-AT-ATTTC--TT-CA-CC-GACTTT--TTTCT--TAT-AT--C-CAATCTTCCGAACTCA--AACAT----CTTGGCTTT-ATCCATGAC-GTC-AT-TCCTCTAC-TCT--TC----AA---ATA---TAACCT------CC----ATCAG---CACCTCTTA-CTC--T-A-CCT------ACAATATGGT--TACTT-TCCTC--CAA-AA--TGCAT-A-TGGAAAACTTGTGTTAAAGCTTT------CAT---------------TTACACTC-G-----A------GACGT-CAGCAAAT-GCTTTCAG-AT----ACTTC---------CTTTCTCCAATTCAACACTAT-TACAGCAGGAAGACCCC-CACAAGCTATATGGAA---AATCCCTTCGAACA-TCCATGAAATTGAAATTTGT-AAATTTATTATCAA--ATTTTGGACTCTTGTCGACTCTCCTCCAAAAT-CTTGTCTC-CTGT--GT-G-GC-AACAATTT-CGTCAACACTTTCCAGCACA-TCTC-AACCACCT----GTCT------------AGAAACAGCTGCTTTTC-GAG-ATGCT-TGGTGGGATACGG----TGATT---GA--CTACGATATCGTGCTTAGTGCT--GA-ACTTA-----GTGGTCTCTATCCTCAG--GACG---TT-TATCTCT-TTTTACTTGGTGCTAG--ATCT--ATCACAA-ACGCTATTGCTCAATTTGACGGAC--CCGGC---CTAGAT-ATTCTTAACTTCCGTTTTTTAAAGAGAT---GTT-A-CTAA-GTAGCAGA---TTGGTGCAACA-GACA------GTTGCGTCATAT------CGCCTCTTAATCAA-TTCCTTTTCCA-GTGTTTAT-TC--TCAA--AAGT---AGT-ACGCT-CTA--GA-CA-GC-------A----ACTTAG-TTAC---CATCTTCTGTAAATACTGATCAGACTTTTTTT---CTTCTTCTTT-T--CTTTTGTTT-G--TTCGTTTCTTATTATATC---------A-TG-CAC-TT-A-----AATG-----TGTAAT-TGTCTA-ATGATTTAATTTCTTT--AT-TGTT--CATGTAATCTCCA-ATGGGAGGAAATAAAGAAAGAATG
gi|6 : ttacCGAAC-ATGT-G--TGAACGTTTAT-TAGGTCTT--TTT-TCTATCA---CCGCGG--A-GATC-GA-AATTAAGA---A-A--CT--TCAA-TTTTTGGACG-TCTCTG--TG--AGCTTG-A---TAC----TAACT-ATATCTCA--C--AAAACGCAT-TTTCC--TT-AC-CC-GACTTT--TTTCG--TAT-GTGAT-GAATC--CTGATATCA--AACAT----CGTGGA-TT-ATTCAGGACTATT-ATATCCCATA---TTGACA----AA---ATA---CATCTT------GT----ATT-----CTGTTTTTA-CTCA-TTA-TCT------CGAAAGTGGT--GTCTTCTCTTC--CAA-A---T-CAGAA-TGGAAGAGGCCTGTAAAATCCTC------CGTA---A----TCAC-TTACCACTCCGATTATA------GAAAA-CAGCGCAT-GGCTGCTG-ATCCCGACTTTGACTTACGACTTTGCTCGATTTATCACTCTGTGT-GCAGTAAAATCAC-CAACATCGTTCTGGAAT--ATTCCACGC-AATA-ATAACGAGATTCTTCTGTGC-AAGTTTATTGTCAA--ATTATGGACCCTTCAGGATATTCCGCCCGCAA-CTTG-CTCACTTT--GC-GC-A-AACCCTTTACA--AATGTGTTCGAGCACG-TATC-CACTACCT----GTCC------------GGAAACGGCTTTATTTC-GTG-ACGCT-TGGTGGAAAACCT----TAATTGAAGA--CT--GACATTTCTCTTGGCGCC------------------GACTGT---CTCAA--TACG-ACTTGTACTCAT-TTATCCTCGGTGCAAGGCACAT-GATATCAG-AC----TTACCCGATC--ACGATCTTCCAGCA--CTTCAT-CTCTTAAACTTTCGT
gi|7 : ctaCATGATCTATAATGTACCAGCTACATCA-ACCTGGAATATCGGATCGTATATG------GACTTTAATCAAAGATGGTCATCCCCA------TACACTGTTCTCTGTCATTGTCATCAA----ATGAGCTCTGAC--TGGATTCCAGATTCC-CAAGGCGTTAGACATGGAGGTGT-TTTGT--CAACCTTTCTATAT-----------TTAGTATATACATAGA-CGGA-TTG-CTACATGA-AATACAA-AATCTGTGTAC--GAA-TATTGGC-ATTTTCA-GCAT---TTCAAGCTCAAATCCAA-CACTTG-C-GGACGATATTTGTTTGCTGTATT-CCACTTAC-TCA-A-AATGGGCTACAAAA--T-ATTCT--AC-ACA-------A-AATAT--ACGATTATTCA----ACGC-AATGGCG-ATTT--ACGTTCAATGC-AAATAAATCCAAT--GTCCTTCATTTCAATCCAAAAAAGG----GCA-A-ACAACACC-GAC-AC-ATTAA----CATGGCACCT-AGGC-----AAGAATGCTATTC-AC---TC--CTCCAA--GGAATATAAACA--TCT-TGGAATCTT-----------------TTGAT-CCCAGTAGCAGAAT-CTC---------------AAAG----GACGCCAGGCA-----TT--GTGCTTAAACC---TTCTG-AA-AGCTG---AA-CCTAA-TC----ACTGTC-T-CCAAGC---TATAC-AGAAA-AG--TTGTTC--TACCC-TCGG---TA-CTGT--ATGGAA-GCG--AACT-G-C--GG-T-GCGACCTACGA--
gi|8 : aagtttgacaccgtatggagaG--A-AATA-GACAA--AAGA---A-AAACT--CCTATTTTTTGACCG-ATTATG--GG--AATTGG-A---CAC----CAA---AACTCTTG--A--AAAGAAGAT-ATTTC--A--ACACC-GACTTT--TTTCT--TAT-A-GACAGTCTC--TCTAGATCA--AACAC----TTTGTCTTC-ATACATGAC-GTC-AT-C-----AC-TCT-ACACTTCAA---GTATTTTAAACT------CC----ATCAG---CACATCCCA-CTC---TA-TCT------ATAACATGGT--TACTT-TCCTC--CAA-A---------A-TGGAAAATTTCAGTCAAAGCAGC------AATA---ACAGTTTGCATTTACACT-CA-----A------AACGT-CAG---ATCTCTCTCAG-AT----ACTTC---------GTTTCTCCAATTCAATACTAT-TACAGCAGGAAGACCCT-TGTAAGCTATCTGGGA---AATCCACTCTAGCA-TCCATGAAATAGATTTGT-T-AAATTTATTACCAA--ATTGTGGGTTTTTCCTTACTCTTCTTCAGAAT-CTTGTCTCA-TGT--GT-GGTA-AACAATTCATG--AACATTTT-TAGCACA-CCTCGCAACACTCAAAAATCCACACAAACCAGTAGGAACAATTGCTTTTTGGAA-ATGCT-TGAT-GGAAACAT----TTATT---TA--CTATGATATTTTGCTT
gi|9 : tttcttctCGC-CAACACCGCTCTGGAAGCAACTCCACTCACACAATATGAGAGATCTTCCTGGGCTAAGTC-ATTGGTAATAATTATGGACCCTTCAGGAAATTCCGTCCGAAAACGTG-CTCACTGTTTGT-GCGA-AACC-TTCACA--AACGTGTTCGAGCACGGTATC-C-CTACCT----GTCC------------GGAAACGGCTCTCTTTC-GTGAACGCC----TGGGGAACCA----TTAGTGAAGAACCTTCGG-ATCTCTCTAGGCGCA--GAGA-TTA----TCTGGACTATC--CTCAAAGTACGAACTTGTATTCATATTATCCTCGTTGCAAGGCACATGGATCTCAGAAC----TTG-CCGATT--ATGATCTTCCTGCAATCTTCAT-CTCCTGAACTTTCGTTTCATTAAGAGAT----------GCA-G-CGCATG----TATCACAA-A-AACC------TTCGTGTTGCAT------TGTAACTTA--C-ACTTGTTTTTCTG---GTTTAT-GT--TTAT---A-T---AGA-AT-TC-CTGT-GA-TA-AT-------A----TCC----TTCT---CATC-ACTAT--ATATC-ATTTCAT--TTATT---CCTCATCAAT-T---TTTTG----G--CACATGTC---------C---------A-TA-CACATTAATTG--AATGCC---TGGTAT-TGTAT--ATGAatgtcttgaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGTGCTAGAGACACCACAATCACTACGTTCCAATTGATTGACCCCATTACATATTCTTTAATTTCCCGCTTCGGAGCATGGTACAACAAGATCTAGACTGTTTGCGCCATATTGAACTCGTAACTCACGTCTTTTCAAGTAGCCTACTTATCAACTTATAACTGCTTTAGACAGCAAC