lowQualScore : 3333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 1 11 11 11 111 1 111111 111 1111 1 555555555555555 1 2222222 2222 1 3333333333 444444444 1 1 111 111 1 1 3333333333333 2222222 1 1 1 11111111 1 1 222222 3333 1 1 11111 2222 1 1111 1 222 1 444 11 22 11 11 1 22222 1 1 1 111 22 1 3333 1 11 3333333 1 11 777777777777777777777777777777777777777777777777777777777 11 222222 1111 1 11 2222 1 1 111 1 2222 1 2 111 111 111 1 1 11 1 22222 11 22222 111 44444444444444444 111 111 111 11 1 22222 3333 1 1 1 444 1 333333333 2222 555555555 11111 2 2222 11 11 1 1 2222 1 4444444444444444444444444444444 33333333333 1 2 1111 4444444444 3333333 4444 2 1 3333333 33333333 1 1 77777777777777 1 11 22 11 11 333333 1 333 2 77777777777777777777777 1 22 222 1 2 1 2 1 222 22 2222 1 2 33 11 66666666 33333 11 2 44444 22222222 2 2 1 111 1 4444 77777777777777777777777 333 33333 2222 11 11 444444444444444 1111 1 44444444 111 222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 333 4 333 3 4 33 2 666 3333 222 44 999999999999999999999999999 1111 1 2
lowQualScore : 8 00 4444444 8 8 8 8 0 11 8 11 8 11 777 8 6 8 0 666666 111 3333 0 000000000000000 0 2 7777777 2 2 1111 0 2 0 1111111111 9 3 000000000 0 0 777 111 2 0 0 9999999999999 5555555 0 0 0 333 88888888 6 0 77 0 888888 7777 2 0 0 3 3 11 0 3 77777 777 4444 0 2 4444 0 444 1 5 666 55 8 00 8 88 88 3 7 3 99999 7 3 88 3 3 777 00 3 5555 3 88 7777777 3 88 777777777777777777777777777777777777777777777777777777777 88 000000 4444 0 3 33 0000 0 0 777 3 0 1111 0 0 777 444 777 0 0 11 8 8 0 0 8 8 22222 3 8 8 11 8 00000 5 0 8 444 8 8 8 8 999 00000000000000000 4 111 777 3 777 33 9 3 22222 6666 3 3 3 111 3 333333333 2222 333333333 55555 6 8888 88 88 3 3 1111 3 0 4444444444444444444444444444444 7 22222222222 8 0 7 2222 2222222222 2222222 6666 0 5 2 6666666 7 77 22222222 3 0 6 00000000000000 0 8 6 00 22 11 8 88 222222 5 222 1 3 66 33333333333333333333333 3 9 77 000 4 3 5 0 0 999 0 0 111 99 6666 6 8 0 0 33 8 11 66666666 5 99999 00 8 0 8 33333 8 77777777 0 7 0 666 0 6666 00000000000000000000000 888 3 33333 2 4444 33 3 88 777777777777777 6 8 7777 6 55555555 444 888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 1 222 0 111 0 0 0 5 0 8 11 6 0 555 2 0000 111 00 3 333333333333333333333333333 7777 6 0 3 5 8
lowQualScore : . .. ....... . . . . . .. . .. . .. ... . . . . ...... ... .... . ............... . . ....... . . .... . . . .......... . . ......... . . ... ... . . . ............. ....... . . . ... ........ . . .. . ...... .... . . . . . .. . . ..... ... .... . . .... . ... . . ... .. . .. . .. .. . . . ..... . . .. . . ... .. . .... . .. ....... . .. ......................................................... .. ...... .... . . .. .... . . ... . . .... . . ... ... ... . . .. . . . . . . ..... . . . .. . ..... . . . ... . . . . ... ................. . ... ... . ... .. . . ..... .... . . . ... . ......... .... ......... ..... . .... .. .. . . .... . . ............................... . ........... . . . .... .......... ....... .... . . . ....... . .. ........ . . . .............. . . . .. .. .. . .. ...... . ... . . .. ....................... . . .. ... . . . . . ... . . ... .. .... . . . . .. . .. ........ . ..... .. . . . ..... . ........ . . . ... . .... ....................... ... . ..... . .... .. . .. ............... . . .... . ........ ... ... ................................................................................... . . ... . ... . . . . . . .. . . ... . .... ... .. . ........................... .... . . . . .
lowQualScore : 0 22 0000000 0 0 0 0 0 00 0 00 0 00 555 0 6 0 0 000000 000 5555 0 222222222222222 0 5 8888888 5 5 2222 0 5 2 2222222222 8 2 000000000 0 0 555 000 2 0 0 5555555555555 0000000 0 0 0 555 55555555 5 0 88 0 888888 8888 2 0 0 2 2 55 8 2 00000 222 8888 0 5 8888 0 333 0 7 777 77 3 00 3 33 33 7 3 3 33333 3 3 33 3 3 777 00 3 0000 3 33 0000000 3 33 000000000000000000000000000000000000000000000000000000000 33 444444 8888 0 2 88 0000 0 5 555 2 0 2222 0 0 555 000 555 0 0 00 0 0 8 0 0 0 88888 2 0 0 00 0 00000 6 8 6 000 0 0 0 0 888 00000000000000000 2 000 000 2 555 88 0 3 00000 0000 3 3 3 777 3 777777777 7777 333333333 33333 7 3333 33 33 3 3 7777 3 7 0000000000000000000000000000000 3 00000000000 8 0 8 2222 2222222222 0000000 4444 4 0 0 3333333 3 99 88888888 3 5 7 22222222222222 8 0 0 88 00 00 0 22 000000 0 222 5 0 22 00000000000000000000000 0 0 55 222 0 2 5 0 0 555 0 0 000 00 0000 0 0 4 8 00 0 00 00000000 0 22222 88 0 4 0 00000 0 88888888 0 8 0 555 0 0000 55555555555555555555555 555 2 55555 0 8888 00 2 55 666666666666666 8 0 0000 6 44444444 000 000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 4 888 0 444 8 2 8 2 0 0 00 4 6 222 8 8888 666 44 2 666666666666666666666666666 0000 0 8 8 2 0
consensus : CCATTCT-CC-CGC-------AAAAG-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGATAAGT-AA-ATAAATG--AA--AAGA-A-GGACATN-T-TG-TGTACAT---A---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--CG--G-TTCN-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGNC-NTACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGC-T-ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTT-TGGTGAAATGTGTAC-AATTA--TTTCT--ANTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGANNAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--C----T-AAT-GCGA-TTT-----CAGAAA--C-----G-ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTGCTTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TAGT-T--A-AAATT-T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ACATA-GGACTCTAGAGC--------------------------T---TTTGATCGTTACGGAAAAACA--GGATG----TACGG-AAACATAGAATAC-ACTTT-AT-AATCC-CAATGTA-AATATTGTTCA-AAGAGTAG-T--AGTCTATCATACAAAAATGCTTCTCAAATATCCATTTCTCTTCATCGTC--TTTCAGGN-TNNTCAAATG-ACATGAACAAA---TAGT--GTGTAAAAAAATATGTG-TGGTTT-CAGTTGGAAAA--CAGAAAA-GGTTGTGA--A-AAATATGCTTCCGC-TGAACA-GTAAATCNAANTTTTCGCGCATATCCTTACTATGACATCTCCGGCNACTTAATGGTGATTTTGCCANGCATTTACTCTAACACAAG-ACCNNTAAGAT-ATATTTT-AAGATTC-CATAAAAGAAAG-TG-CATGA-TATTTTGTTTAAA-TTTGGC--AGTACATTGTATTTCCTTTTTT-TATAAATAAAATCT-ATTATTC-CGTAACGGG-GATTAAAT--GATCCATCATG-AC-AAACGTT-TTC-GTGAAAC--CATCGCTA---------AAAT------NACGGACT--TTGTGTCCTAA-A-AAAGATGT--AANGTCAAAATTTTTAT-TTCATC--------AAGGTAG-TCACC--AATTGGCAATT--AAAA--ATA---TTTTGCTTTTTAACATT-ATTN--T-TTGATA-TCACATCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAAT--TATCTG-TCAA---TCAAGATTATATGCGCCA-TAAATA-AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG---AAGGAAAATTT-AGTGGTNGGCAGAAA-CTATTCTG---CTTGA-TTTTTNTTAGGACTGC--CTTA----TCGTGACTTTTCC-AAT-TCC
Reference ( gi|3 ) : CCATTCT-CT-CGC-------AAAAG-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTACAT---A---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AG--G-TTC--TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGAT-ATATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAG--T-ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAGTTTTT---GTGAATTGTGAAC-AAATA--TTTCT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA-------T-AAT-GCGA-TTT-----TAGAAA--T-----G-ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TGGT-T--A-AAGTT-T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ATATA-GGACTCCAGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGGA-TAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTG-TG-TTC-CAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-G-ACTCGTAA-AT-ATATTTT-A-GATTC-CATAAAAGAAAG-TG-CAT-A-TATTTTGTT--AA-TTTGGC--AGTA--------TTCCTTGTTTATATTAATCAAATCT-ATTATTC-CGT-AC--G-GATT--AT--G-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAAT------TACGGACTCACTGTGTTCTAAAAGAAAGGT-T--AATTTCAAAATTTTTATGGTCATA--------AAAGTAG-TCA-C--AATTGGCTATT--AGT---ATA---TT---CTTTTTAACAGTAATTG--TATTAATA-TCAT-----TAT--TA-CGAGATCTAATAATCTCTACCT-CCTAT-TTATCTGCTCAAAATTC-AGATTATTTGCGCCAGTAAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAAA--T-AGTGTTTGGCAGAAATCTATTCTGTTCTTTGA-TTTTTAT--GGA------CCTA----TCG-GACTTTTTCAAAT-TCC
gi|6 : CCATTCT-CC-CGC-------AAAAG-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTACATGATA---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TG--G-TTCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG-T--TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTAT-ATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTGATTTT---GTGAAATGTGTAC-AATTA--TTTCT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGATACTCAGT-AAT-ACGA-TTT-----CAGAAA--T-----G-ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TAGT-G--A-AAATT-T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ACATA-GGACTCTAGAGCATATACAGG---------------------TTTGATCGTTACGG-AAAACA--GGATGT---TACGG-AAACATAGAATAC-ACTTT-GT-AATCC-CAA-GTA-AATATTGCTC--AAGAGTAG----AGTTTATC-TACATGCACGCCTTGAAAAT-CTCA
gi|1 : gCCATTCTTCT-CCCGAAAACAAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTACATT--A---ATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTG--G-TTCCTTTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGC-TTACAGTA-TATGCATAG-------AATGTTTTTAACGGAT-AGG--T-ATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTTTGATGAAATGTGTA--AATTA--TTTCT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA-------TGAGTAGCGACTTT-----CAGAAAAGT-----GAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGA-AATTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGATATA-GATCTCTAAAG----------------AGCATATACAGT-----TGATTGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-ACTTTGATAAATC--CAATA---AATATGCT---CAAGAGTAA-TAAAGTTTAT-AT-C--AAATGCTTCTCA---ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTT-TTT-CAGT--GAAAACTCAGAAAAGGGTTG-GAAGAGAAATATGCATTCGCGTGAAAACGTAAATCAAAA-TTTC---CAA----TTA-TAT------TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACA-GTACGCGTAA-ATAATATTTTAA-GATTCATACAAAAGAAAATTGTCAT-AGTA-TTTGTTAAAA-TTTGACTGAGTA--------TTTCCTTTTTCTA--AA--AAAACTGATCATTCACGTAAC--GTGATT--ATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCT-CGGACT--TTGTG-TCT---ACAAAGAT-TGCAATGTC-AAATTTTAAT--TCAT----------AAGTAGTTCA-CAGAATTGGCGATT--A-TAAAATAGCTTT---GGTTTTAGCATTATTTGAATATAAACAGTCATA----TAC--TA-CGAGATC-AAT-ATCTGTAC------ATGTTATCTTGTCAA---TC-AGATTA--TGCGCCA-TAAA-ACAAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG---AAGGAAAA--TAAGTG-TTGGCAGAAAACTAAT-TG--CTGCG--TTTTTGT--AAAAGGTTGCCTA----TCG-GAC-TTTTCAGATGTCC
gi|23 : aagCCATTCT-CC-CGC-------AAAAG-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--Gagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|2 : agTTCT-CTACGC-------AAAAGCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTAC-T---AGATATTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AG--GGTTCA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAG--TCATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCGTTTTTATGGTGAAT-GTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC----T-AAT-GCGA-TTTGTACCCAGAAA--CCATCAG-ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---GGT-T--AGAAGTT-T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--A-ATAAGGACTCCAGAGCC-------------------------TCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGGA-TAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTG-TG-TTC-CAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-G-ACTCGTAA-AT-ATATTTT-A-GATTC-CATAAAAGAAAG-TG-CAT-A-TATTTTGTT--AA-TTTGGC--AGTA--------TTCCTTGTTTATATTAATCAAATCT-ATTATTC-CGT-AC--G-GATT--AT--G-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAAT------TACGGACTCACTGTGTTCTAAAAGAAAGGT-T--AATTTCAAAATTTTTATGGTCATATTATTCATAAAGTAG-TCA-C--AATTGGCAATT--TGTA--ATA---TT---CTTTTT-ACAGT-ATT-----TTAATA-TCATA----TA---TA-CGAGATC-AATAA-CT-TA----CCTGT-ATATCTG-TCAA---TC-AGATTA--TGCGCCA-TAAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG---AAGGAAAA--T-AGTG-TTGGCAGAAA-CTATTCTG----CTGA-TTTTTAG--GAG------CCTA----TCG-GACTTTTC--AAT-TCC
gi|20 : ccatatTCT-CA-CGCT------AGAAT-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|11 : GAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTACA--------------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGTTT-TTC--TTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTC-CCACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-T-ATGCATTCTAGCAAATCA-TGTTCAAAG-TAT
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTTGT-T--G-AAATT-TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|14 : AAACA-----TT----TACGG-AAACATAGAATAC-ACTTT-TT-AATCC-CAA-GTA-AATATTGTTC--AAGAGTAG----AGTCTATC-TAT-AAAATGCTTCTCA---ATCCATTTCTCTTTATCATC--TTTAGGGC-TGCT-TAATG-ATAGTCACAAA---TAG
gi|21 : AATATTGTTCA--AGAGTAG----AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|5 : taTACAAAA-TGCTTCT--AAT--CCATT-CTCTTCATCGCT--TTTCAGGG-CTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTG-TGGTTT-CAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAG-ACCATTAAGAT-ATATTTT-AAGATTC--ATAAAAGAAAG-T--CATGA-TA-TTTGTTTAAA-TTTGGC--AGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCT-ATT-TCC-CGTAACGGG-GATTAAAT--GATCCATCATG-AC-AAACG-T-TTC-GTGAA----CATCGC------------AAT------AACGGACT--TTGTGTCCTAA---AAAGATGT--AAAGTCAAA--TTTTAT-TTCATC--------AAGTTAG-TTACC--AATTGGAAATT--AAA---ATA---TTTTGCTTTTT-ACATT-ATTT--T-TTGATA-TCACATCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAA---TATCTG-TCAA---TCAAGAATTTATGCGCCA-TAAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTT-AGTCGTGGGCAGAAA--TATTCTG---CTTGA-TTTTTTTTAGGACTGC--CTTA----TCATGACTTTTCC-AAT-TCC
gi|4 : atTACAAAA-TGCTTCT--AAT--CCATT-CTCTTCATCGCT--TTTCAGGG-CTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTG-TGGTTT-CAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAG-ACCATTAAGAT-ATATTTT-AAGATTC--ATAAAAGAAAG-T--CATGA-TA-TTTGTTTAAA-TTTGGC--AGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCT-ATT-TCC-CGTAACGGG-GATTAAAT--GATCCATCATG-AC-AAACG-T-TTC-GTGAA----CATCGC------------AAT------AACGGACT--TTGTGTCCTAA---AAAGATGT--AAAGTCAAA--TTTTAT-TTCATC--------AAGTTAG-TTACC--AATTGGAAATT--AAA---ATA---TTTTGCTTTTT-ACATT-ATTT--T-TTGATA-TCACATCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAA---TATCTG-TCAA---TCAAGAATTTATGCGCCA-TAAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTT-AGTCGTGGGCAGAAA--TATTCTG---CTTGA-TTTTTTTTAGGACTGC--CTTA----TCATGACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|18 : atCATCGTC--TTTCAGGC-TATCA-AATG-ACATG-ACAAA---T------T-TAAGAAAA-ATGTG-TG-TTTTCAGT--GAAAA--CAGAAAA-GGTTgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|22 : T-A-TATTT-GTT--AAATTTGGC--AGTAT-------TTCCTTGTTT-TA--AATAAAATAT-ATT-TTC-CGTAACG-G-GATT--A
gi|8 : TTTTAT--TCATT--------AA-GTAA-TCA-C--AATTGGCAATTTTAAA---ATA---TT---CTTTTTA-CA----TTA--TTTTGATA-TCAC------AT--CA-T--------ATAA-CT-TACCT-GC-AT---ATCAG-TCAA---TC-AGATTAT--GCGCCA-TAAATAAA--CTTCAA-CAGAG-GCTATT-TTAT-CGAT-GAATG--AAGGAAAAA----AGGGTT-GGCAGAAA--CATTTTG---GTGGATTTTTTAG--GGG------CTTAAGTGCCG-G-CCTTTTC-AAT-TCC
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 1111 111 11 11 2222222222 11 111111 1111 1111 11 333333333 111 1111111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 555555555 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 2 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 1 11 9999999999999999 77777777777777777777777777777777777777777777777 1 22 1 22 222 1 1 33333 1 4444444444444 1 33 1111 1111 1 222 1 4444444444 444444 1 22 1 1 1 2 1 22 11 1 1 1 4444 111 1 2 11 2 2 1 1 3333 4444444444444444444 22 1 1 22 3333333333 1 111 22 222 1 1111 3333333333333 44444 111 1 11 22 1 111 22 1 11 111 11 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 4 6 8 11 11 8 8 99 8 8 9999999999 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 8888888 000 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 9999 8 8 0 0 0 11 8 0 3 99 8 11 8 8 33 0 0 888 9 4 666 0 33 1 3 0 77777 3 0 22 0 0 111 22 0 0 55 0 33 3333333 0 33 333333333 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 66 8 8 1 444 0 8 7777 8 3 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 33333333333 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 5555 0 33 1111111111111111 5 22222222222222222222222222222222222222222222222 8 8 8 6 11 3 88 6 6 444 5 3 2 44444 5 66 99999 4 1 4 6666666666666 0 00 99 6 6666 8888 0 555 6 8 1 1 5555555555 111111 1 3 55 0 1 0 0 0 333 0 8 0 11 8 88 3 5 9 3 0000 3 666 5 6 7 3 33 0 0 6 8 8 0 8 5555 5555555555555555555 1 22 0 0 88 6 1 55 5555555555 3 6 6 555 11 7 6 111 8 6 7777 6 6 4444444444444 6 6 55555 6 6 111 5 55 3 6 66 6 6 6 6 7 111 66 5 1 6 33 1 111 88 00 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . .. . . .......... .. . ...... .... . .... .. . . ......... . . ... . . . . ....... ... ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. ......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. ................ . ............................................... . . . . .. . .. . . ... . . . ..... . .. ..... . . . ............. . .. .. . .... .... . ... . . . . .......... ...... . . .. . . . . . ... . . . .. . .. . . . . .... . ... . . . . .. . . . . . . . .... ................... . .. . . .. . . .. .......... . . . ... .. . . ... . . .... . . ............. . . ..... . . ... . .. . . .. . . . . . ... .. . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 00 0 0 2222222222 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 4444444 000 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 2222 0 0 8 8 8 00 0 8 8 44 0 00 0 0 88 2 0 000 8 0 222 0 88 0 2 0 22222 2 0 00 0 0 000 55 0 0 55 0 88 2222222 0 88 000000000 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 44 0 0 4 000 8 0 0000 0 2 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 00000000000 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 2222 0 88 0000000000000000 8 22222222222222222222222222222222222222222222222 0 0 0 0 88 3 88 7 7 777 5 2 0 11111 0 99 66666 9 4 3 5555555555555 8 33 22 7 8888 2222 0 000 0 0 0 0 6666666666 666666 0 2 00 6 0 8 6 6 444 0 0 6 22 0 00 2 5 8 2 2222 0 222 5 7 3 3 11 4 0 0 0 0 6 0 8888 8888888888888888888 0 00 8 6 66 0 0 88 8888888888 5 7 7 888 22 3 7 000 0 7 0000 7 7 5555555555555 7 7 00000 7 7 777 5 00 5 7 22 7 7 7 7 7 777 77 0 0 7 33 0 777 88 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NG-G-TT-CTTTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ATATA-GGACTCC--AGAGC-C-------T-T-C--TTGATCGTTACGGAAAAACA--G----------GAT-GT---TACGG-AA-----------------ACATAGAATAC-A-CTTT-ATAATCCGCGATGTA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGT--GAACAAATATGCTTCCGC-TAAACAA-GTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTNTTT-TATAAATAAAATCTATTATTC-CGTAAC-GGGATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGA-TGTTAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATT-ATT-T-TTG-ATAT-CACA-TCAATATA-TA-CGAGATC-AATAA-CTTTACCTG-CA--TATC-TG-TCAA---TCAAGATT-TATGCGCCA-TAAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG---AAGGAAAA-TTAGT-GTTGGCAG-AAA-CTATTCTG---CTTGATTTTT-T-TAGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGATAAGT-AA-ATAAATG--AA--AAGA-A-GGACATN-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--CG-G-TT-CNTTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGNCN-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGC-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGTAC--AATTATTT-CT--ANTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGANNAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--C------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTGCTTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TA--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ACATA-GGACTCT--AGAGC-T-------T------TTGATCGTTACGGAAAAACA--G----------GAT-G----TACGG-AA-----------------ACATAGAATAC-A-CTTT-ATAATCC-CAATGTA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAATATCCATTTCTCTTCATCGTC--TTTCAGG-NTNNTCAAATG-ACATGAACAAA---TAGT--GTGTAAAAAAATATGTGTGGTTTCAGTTGGAAAA--CAGAAAA-GGTTGT--GAA-AAATATGCTTCCGC-TGAAC-A-GTAAATCNAANTTTTCGCGCATATCCTTACTATGACATCTCCGGCNACTTAATGGTGATTTTGCCANGCATTTACTCTAACACAAGACCNNTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTTTAAATTTGGCAGTACATTGTATTTCCTTTTTT-TATAAATAAAATCTATTATTC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-TTC-GTGAAAC--CATCGCTA---------AAA-----TNACGGACT--TTGTGTCCTAAAAAAGA-TG-TAANGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATT-ATTNT-TTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAATTATC-TG-TCAA---TCAAGATTATATGCGCCA-TAAAT-AAAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG---AAGGAAAATTTAGTGGTNGGCAG-AAA-CTATTCTG---CTTGATTTTTNT-TAGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTAC---ATT--AATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTG-G-TTCCTTTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGATATA-GATCTCTAAAGAGC-A-------TATACAGTTGATTGTTACGGAATAACATGG----------AAT-GATTTTACGGAAA-----------------ACATAGAATAC-A-CTTTGATAAATC-CAA--TA-AATA-TGCTC--AAGAGT-A-ATAAAGTTTAT-AT-C--AAATGCTTCTCA---ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTGGAAGAG-AAATATGCATTCGCGTGAAA-ACGTAAATCAAAATTTCCA-----------ATTAT---AT-TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAAGATTCATACAAAAGAAAATTGTCATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCTTTTTC-TA-AA--AAAACTGATCATTCACGTAAC-GTGATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTG-CAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTTG-GTTTTAGCATT-A---T-TTGAATATAAACAGTC-ATATACTA-CGAGATC-AATAT-CTGTACATG----TTATCTTG-TCAA---TC-AGAT--TATGCGCCA-TAAAA-CAAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG---AAGGAAAA-TAAGT-GTTGGCAGAAAA-CTAAT-TG---CTGCGTTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---A-----------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGTT-TT-TCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : AAACA---------------T-T----TACGG-AA-----------------ACATAGAATAC-A-CTTT-TTAATCC-CAA-GTA-AATATTGTTC--AAGAGT-A-G---AGTCTATC-TAT-AAAATGCTTCTCA---ATCCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA---TAG
gi|18 : CATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA---T------T-TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTT
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTACTAGAT---A-TTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AG-GGTT-CATTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--A-ATAAGGACTCC--AGAGC-C-------TCTCT--TTGATCGTTACGGAAAAACA--G----------GAT-G----TACCG-AA-----------------ACATAGAATAC-AACTTT-ATAATCCGCGATATAGAATATGTTTCATAAGAGT-AAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGT--GAACAAATATGCTTCCGC-TAAACAA-GTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC--GGATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAA-GGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCA--CAATTGGCAATTT-GTAATA-TT---CTTTTT-ACAGT-AT--T-TTA-ATAT-CATA-T--ATA------CGAGATC-AATAA-C-TTACCTG-TA--TATC-TG-TCAA---TC-AGAT--TATGCGCCA-TAAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG---AAGGAAAA--TAGT-GTTGGCAG-AAA-CTATTCTG---C-TGATTT---T-TAGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A-GAGT-A-G---AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGCA-------GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAAC-GGGATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AG-G-TT-C-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAG--TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA---------TAAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ATATA-GGACTCC--AGAGC-C-------N------NNNNNNNNNNNNNNNNNNNN--NNNNTCTCTTTGATCGT---TACGG-AAAAACAGGATGTACCGAAACATAGAATACAA-CTTT-ATAATCCGCGATATAGAATATGTTTCATAAGAGTAA-GT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGT--GAACAAATATGCTTCCGC-TAAACAA-GTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC--GGATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAA-GGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCA--CAATTGGCTATT--AGTATA-TT---CTTTTTAACAGTAATTGTATTA-ATAT-CAT------TAT--TA-CGAGATCTAATAATCTCTACCTCCTATTTATC-TGCTCAAAATTC-AGATTATTTGCGCCAGTAAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAAA--TAGTGTTTGGCAG-AAATCTATTCTGTTCTTTGATTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-T--GAA-A--TAT-CTTCCGT---AAC-A-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTT-GTTTAAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GA-TG-TAAAGTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATT-ATTTT-TTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAA-TATC-TG-TCAA---TCAAGAATTTATGCGCCA-TAAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTTAGTCGTGGGCAG-AAA--TATTCTG---CTTGATTTTTTT-TAGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-T--GAA-A--TAT-CTTCCGT---AAC-A-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTT-GTTTAAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GA-TG-TAAAGTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATT-ATTTT-TTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGACAA-TATC-TG-TCAA---TCAAGAATTTATGCGCCA-TAAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTTAGTCGTGGGCAG-AAA--TATTCTG---CTTGATTTTTTT-TAGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTAC---ATGATAATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TG-G-TT-CTTTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--ACATA-GGACTCT--AGAGCATATACAGGT------TTGATCGTTACGG-AAAACA--G----------GAT-GT---TACGG-AA-----------------ACATAGAATAC-A-CTTT-GTAATCC-CAA-GTA-AATATTGCTC--AAGAGT-A-G---AGTTTATC-TACAgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gTTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA-TT---CTTTTTA-CATT-ATT---TTG-ATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-CA--TATC-AG-TCAA---TCA-GATTAT--GCGCCA-TAAAT-AAA-CTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG---AAGGAAAA---AAGGGTTGGCAG-AAA-C-ATTTTG---GTGGATTTT--T-TAGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtgcacgccttgaaaatctca
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 111 11 11 2222222222 11 111111 1111 1111 11 333333333 111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 4444444444 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 1 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 11 22222222222222222222222222222222222222222 11 111 111 22222 1 22 222 1 22222 1 4444444444444 11 11 111111 1 222 1 4444444444 444444 1 22 1 1 2 22 11 1 33333 222 1 1 1 2 2 2 1 2222 4444444444444444444 22 1 1 22 3333333333 1 111 22 222 1 1 111 22 1 333333 111 1 22 1 22 1 11 111 22 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 1 6 8 11 11 8 8 8 8 8 9999999999 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 222 8 8 8 0 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 7777 8 8 0 0 0 11 8 0 3 11 8 11 8 8 33 0 0 888 9 1 666 0 33 0 3 0 77777 3 0 11 0 0 111 22 0 0 55 0 33 3333333 0 33 6666666666 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 22 8 8 1 444 0 8 7777 8 6 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 22222222222 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 4444 3 33 77777777777777777777777777777777777777777 11 0 1 111 111 6 888 88 6 55555 3 88 6 6 444 5 3 9 55555 5 66 66 44 4 1 4 6666666666666 99 88 99 6 00 888888 0 222 5 0 0 5555555555 111111 0 3 55 0 1 0 0 44 1 0 8 11 11 8 88 3 7 6 3 3 55555 3 000 5 6 3 0 0 0 0 8 8 0 8 9999 5555555555555555555 1 55 0 0 0 4 0 55 5555555555 3 6 6 555 11 7 6 111 8 1 555 6 6 66 33 3 6 6 777777 6 6 111 5 00 6 6 6 99 6 6 6 6 7 99 55 3 6 6 33 1 111 00 99 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . . . . .......... .. . ...... .... . .... .. . . ......... . . ... . . . . ... . . . . ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. .......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. ......................................... .. . . ... ... . ... .. . ..... . .. . . ... . . . ..... . .. .. .. . . . ............. .. .. .. . .. ...... . ... . . . .......... ...... . . .. . . . . .. . . . .. .. . .. . . . . . ..... . ... . . . . . . . . . . . .... ................... . .. . . . . . .. .......... . . . ... .. . . ... . . ... . . .. .. . . . ...... . . ... . .. . . . .. . . . . . .. .. . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 0 0 0 2222222222 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 000 0 0 0 8 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 6666 0 0 8 8 8 00 0 8 8 88 0 00 0 0 88 2 0 000 8 0 222 0 88 2 2 0 22222 2 0 55 0 0 000 55 0 0 55 0 88 2222222 0 88 5555555555 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 00 0 0 4 000 8 0 0000 0 0 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 22222222222 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 8888 2 88 44444444444444444444444444444444444444444 00 8 4 888 777 7 333 88 7 88888 3 88 7 7 777 5 2 4 00000 0 99 77 11 9 4 3 5555555555555 22 33 22 7 88 222222 0 222 4 6 6 6666666666 666666 6 2 00 6 4 8 6 66 4 0 0 66 22 0 00 2 2 7 5 2 00000 3 222 5 7 3 8 4 0 4 0 0 6 0 2222 8888888888888888888 0 44 8 6 6 4 6 88 8888888888 5 7 7 888 22 3 7 000 0 7 333 7 7 77 22 3 7 7 000000 7 7 777 5 77 7 7 7 22 7 7 7 7 7 22 00 3 7 7 33 0 777 77 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCC------------------------TATA----C--T---T-GAT--CGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-NT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCC------------------------T-T-----C--T---T-GAT--CGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATGTA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTNTTT-TATAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTTAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTAC---ATT--AATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTGG-TTCCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGA-TATAGATCTCTAAAGAGCA------------------------TATA----CAGT---T-GAT--TGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-A-CTTTGATAAATCCA----ATA-AATA-TGCTC--AAGAGT-A-ATAAAGTTTAT-AT-C--AAATGCTTCTC--A-ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTG-GAAGAGAAATATGCATTCGCGTGAAAACGTAAATCAAAATTTCCA-----------ATTAT---AT-TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAAGATTCATACAAAAGAAAATTGTCATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCT--TTT-TCTAAA-AAAACTGATCATTCACGTAACGTG-ATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTGCAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTTG-GTTTTAGCATTA--TTT-GAATATAAACAGTC-ATATACTAC-GAGATC-AATAT-CTGTACATG-T----TATCTTG-TCAA---TC-AGA--T-TATGCGCCA-TAAAAC--AAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG--AAGGAAAA-TAAGT-G-TTGGCAGAAAA-CTAAT-TG---CTGCG-TTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---A-----------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGT-TT-TTCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : ---TTACGG-AAACATAGAATAC-A-CTTT-TT-AATCC-CAA-GTA-AATATTGTTC--AAGAGT-A-G---AGTCTATC-TAT-AAAATGCTTCTC--A-ATCCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA---TAG
gi|18 : aaacatCATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA---T------T-TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTT
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTACTAGAT---A-TTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AGGGTT-CA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--AATA-AGGACTCC--AGAGCC------------------------TCT-----C--T---TTGAT--CGTTACGGAAAAACA--GGATG---T-ACCG-AAACATAGAATAC-AACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGT-AAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGTG-TTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-GACTCGTAA-AT-ATATTTTA-GATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT-AA-TTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGTA-CGG--ATTA--TG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCA--CAATTGGCAATTT-GTAATA-TT---CTTTTT-ACAGTA-TTTT-A-ATAT-C-------ATATA-TAC-GAGATC-AATAA-C-TTACCTG-T-A--TATC-TG-TCAA---TC-AGA--T-TATGCGCCA-T-AAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--TAGT-G-TTGGCAG-AAA-CTATTCTG---C-TGA---TTTTT--AGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A-GAGT-A-G---AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGC---A----GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAACGGG-ATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AGG-TT-CT-TT-AG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT--ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T-------AAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNN-T-----C--TCTTT-GAT--CGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAA-CTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAA-GT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCA--CAATTGGCTATT--AGTATA-TT---CTTTTTAACAGTAATTGT-A-TTA---ATA-TCATTAT--TAC-GAGATCTAATAATCTCTACCTC-CTATTTATC-TGCTCAAAATTC-AGA-TTATTTGCGCCAGT-AAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAA-ATAGT-GTTTGGCAG-AAATCTATTCTGTTCTTTGA-TTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTAC---ATGATAATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-CATAGGACTCT--AGAGCA------------------------TATACAGGT--T---T-GAT--CGTTACGG-AAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-GT-AATCC-CAA-GTA-AATATTGCTC--AAGAGT-A-G---AGTTTATC-TACATGCACGCCT-TGAAA-ATCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gTTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA-TT---CTTTTTA-CATTATTTT--G-ATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-C-A--TATC-AG-TCAA---TCA-GA-TT--ATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--AAGG-G-TTGGCAG-AAA-C-ATTTTG---GTGGA--TTTTTT--AGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtca
gi|8 : aaGCC------------------------T-T-----T--T---C-AATTCCGTTACGGAATATT----GACG---TTACGG-ATATATAGATTA-----TTT-TT-AATgttacggaatattgacgttacggatatatagattatttttaatagatcaacactttcacaaaaaattacgaggcatctggtgaactttacatctacattgtaat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 1111 111 11 11 2222222222 11 111111 1111 1111 11 333333333 111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 4444444444 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 1 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 11 3333333333333333333333333 11 11111 22222 1 22 222 1 22222 1 4444444444444 11 11 111111 1 222 1 4444444444 444444 1 22 1 1 2 22 11 1 33333 111 1 1 2 2 2 1 2222 4444444444444444444 22 1 1 22 3333333333 1 111 22 222 1 1 111 22 1 333333 111 1 22 1 22 1 11 111 22 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 1 6 8 11 11 8 8 8 8 8 9999999999 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 222 8 8 8 0 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 7777 8 8 0 0 0 11 8 0 3 11 8 11 8 8 33 0 0 888 9 1 666 0 33 0 3 0 77777 3 0 11 0 0 111 22 0 0 55 0 33 3333333 0 33 6666666666 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 22 8 8 1 444 0 8 7777 8 6 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 22222222222 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 4444 3 33 2 5555555555555555555555555 3 33 55555 8 8 8 99 8 55555 3 88 6 6 444 5 3 9 55555 5 66 66 44 4 1 4 6666666666666 99 88 99 6 00 888888 0 222 5 0 0 5555555555 111111 0 3 55 0 1 0 0 44 1 0 8 11 11 8 88 3 7 6 3 3 55555 2 555 2 5 1 77 0 0 0 8 8 0 8 9999 5555555555555555555 1 55 0 0 0 1 0 55 5555555555 3 6 6 555 11 7 6 111 8 1 555 6 6 66 33 3 6 6 777777 6 6 111 5 00 6 6 6 99 6 6 6 6 7 99 55 3 6 6 33 1 111 00 99 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . . . . .......... .. . ...... .... . .... .. . . ......... . . ... . . . . ... . . . . ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. .......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. . ......................... . .. ..... . . . .. . ..... . .. . . ... . . . ..... . .. .. .. . . . ............. .. .. .. . .. ...... . ... . . . .......... ...... . . .. . . . . .. . . . .. .. . .. . . . . . ..... . ... . . . .. . . . . . . . .... ................... . .. . . . . . .. .......... . . . ... .. . . ... . . ... . . .. .. . . . ...... . . ... . .. . . . .. . . . . . .. .. . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 0 0 0 2222222222 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 000 0 0 0 8 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 6666 0 0 8 8 8 00 0 8 8 88 0 00 0 0 88 2 0 000 8 0 222 0 88 2 2 0 22222 2 0 55 0 0 000 55 0 0 55 0 88 2222222 0 88 5555555555 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 00 0 0 4 000 8 0 0000 0 0 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 22222222222 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 8888 2 88 5 0000000000000000000000000 2 88 66666 0 0 0 00 0 88888 3 88 7 7 777 5 2 4 00000 0 99 77 11 9 4 3 5555555555555 22 33 22 7 88 222222 0 222 4 6 6 6666666666 666666 6 2 00 6 4 8 6 66 4 0 0 66 22 0 00 2 2 7 5 2 00000 5 888 0 7 4 66 4 0 4 0 0 6 0 2222 8888888888888888888 0 44 8 6 6 0 6 88 8888888888 5 7 7 888 22 3 7 000 0 7 333 7 7 77 22 3 7 7 000000 7 7 777 5 77 7 7 7 22 7 7 7 7 7 22 00 3 7 7 33 0 777 77 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGGT---------------------TTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCTATAC-------------------------TTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-NT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTAC---ATT--AATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTGG-TTCCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGA-TATAGATCTCTAAAGAGCATATACAG-----------------------TTGATTGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-A-CTTTGATAAATCCA----ATA-AATA-TGCTC--AAGAGT-A-ATAAAGTTTAT-AT-C--AAATGCTTCTC--A-ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTG-GAAGAGAAATATGCATTCGCGTGAAAACGTAAATCAAAATTTCCA-----------ATTAT---AT-TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAAGATTCATACAAAAGAAAATTGTCATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCT--TTT-TCTAAA-AAAACTGATCATTCACGTAACGTG-ATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTGCAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTTG-GTTTTAGCATTA--TTT-GAATATAAACAGTC-ATATACTAC-GAGATC-AATAT-CTGTACATG-T----TATCTTG-TCAA---TC-AGA--T-TATGCGCCA-TAAAAC--AAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG--AAGGAAAA-TAAGT-G-TTGGCAGAAAA-CTAAT-TG---CTGCG-TTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---A-----------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGT-TT-TTCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : ---TTACGG-AAACATAGAATAC-A-CTTT-TT-AATCC-CAA-GTA-AATATTGTTC--AAGAGT-A-G---AGTCTATC-TAT-AAAATGCTTCTC--A-ATCCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA---TAG
gi|18 : aaacatCATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA---T------T-TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTT
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTACTAGAT---A-TTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AGGGTT-CA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--AATA-AGGACTCC--AGAGCCTCTCT-------------------------TTGATCGTTACGGAAAAACA--GGATG---T-ACCG-AAACATAGAATAC-AACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGT-AAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGTG-TTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-GACTCGTAA-AT-ATATTTTA-GATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT-AA-TTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGTA-CGG--ATTA--TG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCA--CAATTGGCAATTT-GTAATA-TT---CTTTTT-ACAGTA-TTTT-A-ATAT-C-------ATATA-TAC-GAGATC-AATAA-C-TTACCTG-T-A--TATC-TG-TCAA---TC-AGA--T-TATGCGCCA-T-AAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--TAGT-G-TTGGCAG-AAA-CTATTCTG---C-TGA---TTTTT--AGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A-GAGT-A-G---AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGC---A----GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAACGGG-ATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AGG-TT-CT-TT-AG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT--ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T-------AAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAA-CTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAA-GT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCA--CAATTGGCTATT--AGTATA-TT---CTTTTTAACAGTAATTGT-A-TTA---ATA-TCATTAT--TAC-GAGATCTAATAATCTCTACCTC-CTATTTATC-TGCTCAAAATTC-AGA-TTATTTGCGCCAGT-AAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAA-ATAGT-GTTTGGCAG-AAATCTATTCTGTTCTTTGA-TTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTAC---ATGATAATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-CATAGGACTCT--AGAGCATATACAGGT---------------------TTGATCGTTACGG-AAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-GT-AATCC-CAA-GTA-AATATTGCTC--AAGAGT-A-G---AGTTTATC-TACATGCACGCCT-TGAAA-ATCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gTTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA-TT---CTTTTTA-CATTATTTT--G-ATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-C-A--TATC-AG-TCAA---TCA-GA-TT--ATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--AAGG-G-TTGGCAG-AAA-C-ATTTTG---GTGGA--TTTTTT--AGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtca
gi|8 : aaTATTC-CGTAACGGA-ATTGAAgttacggaatattgacgttacggatatatagattatttttaatagatcaacactttcacaaaaaattacgaggcatctggtgaactttacatctacattgtaat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1111 111 11 11 2222222222 11 111111 1111 1111 11 333333333 111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 4444444444 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 1 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 11 000000000000000000000000 11 11111 22222 1 22 222 1 22222 1 4444444444444 11 11 111111 1 222 1 4444444444 444444 1 22 1 1 2 22 11 1 33333 111 1 1 2 2 2 1 2222 4444444444444444444 22 1 1 22 3333333333 1 111 22 222 1 1 111 22 1 333333 111 1 22 1 22 1 11 111 22 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 1 6 8 11 11 8 8 8 8 8 9999999999 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 222 8 8 8 0 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 7777 8 8 0 0 0 11 8 0 3 11 8 11 8 8 33 0 0 888 9 1 666 0 33 0 3 0 77777 3 0 11 0 0 111 22 0 0 55 0 33 3333333 0 33 6666666666 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 22 8 8 1 444 0 8 7777 8 6 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 22222222222 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 4444 3 33 1 5 111111111111111111111111 3 33 55555 8 8 8 8 8 55555 3 88 6 6 444 5 3 9 55555 5 66 66 44 4 1 4 6666666666666 99 88 99 6 00 888888 0 222 5 0 0 5555555555 111111 0 3 55 0 1 0 0 44 1 0 8 11 11 8 88 3 7 6 3 3 55555 2 555 2 5 1 77 0 0 0 8 8 0 8 9999 5555555555555555555 1 55 0 0 0 1 0 55 5555555555 3 6 6 555 11 7 6 111 8 1 555 6 6 66 33 3 6 6 777777 6 6 111 5 00 6 6 6 99 6 6 6 6 7 99 55 3 6 6 33 1 111 00 99 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . . . . .......... .. . ...... .... . .... .. . . ......... . . ... . . . . ... . . . . ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. .......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. . . ........................ . .. ..... . . . . . ..... . .. . . ... . . . ..... . .. .. .. . . . ............. .. .. .. . .. ...... . ... . . . .......... ...... . . .. . . . . .. . . . .. .. . .. . . . . . ..... . ... . . . .. . . . . . . . .... ................... . .. . . . . . .. .......... . . . ... .. . . ... . . ... . . .. .. . . . ...... . . ... . .. . . . .. . . . . . .. .. . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 0 0 0 2222222222 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 000 0 0 0 8 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 6666 0 0 8 8 8 00 0 8 8 88 0 00 0 0 88 2 0 000 8 0 222 0 88 2 2 0 22222 2 0 55 0 0 000 55 0 0 55 0 88 2222222 0 88 5555555555 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 00 0 0 4 000 8 0 0000 0 0 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 22222222222 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 8888 2 88 0 8 222222222222222222222222 2 88 66666 0 0 0 0 0 88888 3 88 7 7 777 5 2 4 00000 0 99 77 11 9 4 3 5555555555555 22 33 22 7 88 222222 0 222 4 6 6 6666666666 666666 6 2 00 6 4 8 6 66 4 0 0 66 22 0 00 2 2 7 5 2 00000 5 888 0 7 4 66 4 0 4 0 0 6 0 2222 8888888888888888888 0 44 8 6 6 0 6 88 8888888888 5 7 7 888 22 3 7 000 0 7 333 7 7 77 22 3 7 7 000000 7 7 777 5 77 7 7 7 22 7 7 7 7 7 22 00 3 7 7 33 0 777 77 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTAC---ATT--AATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTGG-TTCCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGA-TATAGATCTCTAAAGAGCATATACAG-----------------------TTGATTGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-A-CTTTGATAAATCCA----ATA-AATA-TGCTC--AAGAGT-A-ATAAAGTTTAT-AT-C--AAATGCTTCTC--A-ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTG-GAAGAGAAATATGCATTCGCGTGAAAACGTAAATCAAAATTTCCA-----------ATTAT---AT-TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAAGATTCATACAAAAGAAAATTGTCATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCT--TTT-TCTAAA-AAAACTGATCATTCACGTAACGTG-ATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTGCAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTTG-GTTTTAGCATTA--TTT-GAATATAAACAGTC-ATATACTAC-GAGATC-AATAT-CTGTACATG-T----TATCTTG-TCAA---TC-AGA--T-TATGCGCCA-TAAAAC--AAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG--AAGGAAAA-TAAGT-G-TTGGCAGAAAA-CTAAT-TG---CTGCG-TTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---A-----------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGT-TT-TTCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : ---TTACGG-AAACATAGAATAC-A-CTTT-TT-AATCC-CAA-GTA-AATATTGTTC--AAGAGT-A-G---AGTCTATC-TAT-AAAATGCTTCTC--A-ATCCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA---TAG
gi|18 : aaacatCATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA---T------T-TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTT
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTACTAGAT---A-TTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AGGGTT-CA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--AATA-AGGACTCC--AGAGCCTCT-C------------------------TTTGATCGTTACGGAAAAACA--GGATG---T-ACCG-AAACATAGAATAC-AACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGT-AAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGTG-TTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-GACTCGTAA-AT-ATATTTTA-GATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT-AA-TTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGTA-CGG--ATTA--TG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCA--CAATTGGCAATTT-GTAATA-TT---CTTTTT-ACAGTA-TTTT-A-ATAT-C-------ATATA-TAC-GAGATC-AATAA-C-TTACCTG-T-A--TATC-TG-TCAA---TC-AGA--T-TATGCGCCA-T-AAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--TAGT-G-TTGGCAG-AAA-CTATTCTG---C-TGA---TTTTT--AGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A-GAGT-A-G---AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGC---A----GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAACGGG-ATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AGG-TT-CT-TT-AG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT--ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T-------AAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAA-CTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAA-GT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCA--CAATTGGCTATT--AGTATA-TT---CTTTTTAACAGTAATTGT-A-TTA---ATA-TCATTAT--TAC-GAGATCTAATAATCTCTACCTC-CTATTTATC-TGCTCAAAATTC-AGA-TTATTTGCGCCAGT-AAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAA-ATAGT-GTTTGGCAG-AAATCTATTCTGTTCTTTGA-TTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTAC---ATGATAATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-CATAGGACTCT--AGAGCATATACAGG---------------------TTTGATCGTTACGG-AAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-GT-AATCC-CAA-GTA-AATATTGCTC--AAGAGT-A-G---AGTTTATC-TACATGCACGCCT-TGAAA-ATCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gTTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA-TT---CTTTTTA-CATTATTTT--G-ATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-C-A--TATC-AG-TCAA---TCA-GA-TT--ATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--AAGG-G-TTGGCAG-AAA-C-ATTTTG---GTGGA--TTTTTT--AGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtca
gi|8 : aaTATTC-CGTAACGGA-ATTGAAgttacggaatattgacgttacggatatatagattatttttaatagatcaacactttcacaaaaaattacgaggcatctggtgaactttacatctacattgtaat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1111 111 11 11 2222222222 11 111111 1111 1111 11 333333333 111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 4444444444 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 1 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 11 000000000000000000000000 11 11111 22222 1 22 222 1 22222 1 4444444444444 11 11 111111 1 222 1 4444444444 444444 1 22 1 1 2 22 11 1 33333 111 1 1 2 2 2 1 2222 4444444444444444444 22 1 1 22 3333333333 1 111 22 222 1 1 111 22 1 333333 111 1 22 1 22 1 11 111 22 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 1 6 8 11 11 8 8 8 8 8 9999999999 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 222 8 8 8 0 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 7777 8 8 0 0 0 11 8 0 3 11 8 11 8 8 33 0 0 888 9 1 666 0 33 0 3 0 77777 3 0 11 0 0 111 22 0 0 55 0 33 3333333 0 33 6666666666 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 22 8 8 1 444 0 8 7777 8 6 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 22222222222 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 4444 3 33 1 5 111111111111111111111111 3 33 55555 8 8 8 8 8 55555 3 88 6 6 444 5 3 9 55555 5 66 66 44 4 1 4 6666666666666 99 88 99 6 00 888888 0 222 5 0 0 5555555555 111111 0 3 55 0 1 0 0 44 1 0 8 11 11 8 88 3 7 6 3 3 55555 2 555 2 5 1 77 0 0 0 8 8 0 8 9999 5555555555555555555 1 55 0 0 0 1 0 55 5555555555 3 6 6 555 11 7 6 111 8 1 555 6 6 66 33 3 6 6 777777 6 6 111 5 00 6 6 6 99 6 6 6 6 7 99 55 3 6 6 33 1 111 00 99 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . . . . .......... .. . ...... .... . .... .. . . ......... . . ... . . . . ... . . . . ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. .......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. . . ........................ . .. ..... . . . . . ..... . .. . . ... . . . ..... . .. .. .. . . . ............. .. .. .. . .. ...... . ... . . . .......... ...... . . .. . . . . .. . . . .. .. . .. . . . . . ..... . ... . . . .. . . . . . . . .... ................... . .. . . . . . .. .......... . . . ... .. . . ... . . ... . . .. .. . . . ...... . . ... . .. . . . .. . . . . . .. .. . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 0 0 0 2222222222 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 000 0 0 0 8 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 6666 0 0 8 8 8 00 0 8 8 88 0 00 0 0 88 2 0 000 8 0 222 0 88 2 2 0 22222 2 0 55 0 0 000 55 0 0 55 0 88 2222222 0 88 5555555555 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 00 0 0 4 000 8 0 0000 0 0 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 22222222222 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 8888 2 88 0 8 222222222222222222222222 2 88 66666 0 0 0 0 0 88888 3 88 7 7 777 5 2 4 00000 0 99 77 11 9 4 3 5555555555555 22 33 22 7 88 222222 0 222 4 6 6 6666666666 666666 6 2 00 6 4 8 6 66 4 0 0 66 22 0 00 2 2 7 5 2 00000 5 888 0 7 4 66 4 0 4 0 0 6 0 2222 8888888888888888888 0 44 8 6 6 0 6 88 8888888888 5 7 7 888 22 3 7 000 0 7 333 7 7 77 22 3 7 7 000000 7 7 777 5 77 7 7 7 22 7 7 7 7 7 22 00 3 7 7 33 0 777 77 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTAC---ATT--AATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTGG-TTCCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGA-TATAGATCTCTAAAGAGCATATACAG-----------------------TTGATTGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-A-CTTTGATAAATCCA----ATA-AATA-TGCTC--AAGAGT-A-ATAAAGTTTAT-AT-C--AAATGCTTCTC--A-ATTCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGAA-GAA---TTGTTAGAG-AAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTG-GAAGAGAAATATGCATTCGCGTGAAAACGTAAATCAAAATTTCCA-----------ATTAT---AT-TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAAGATTCATACAAAAGAAAATTGTCATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCT--TTT-TCTAAA-AAAACTGATCATTCACGTAACGTG-ATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT--CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTGCAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTTG-GTTTTAGCATTA--TTT-GAATATAAACAGTC-ATATACTAC-GAGATC-AATAT-CTGTACATG-T----TATCTTG-TCAA---TC-AGA--T-TATGCGCCA-TAAAAC--AAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG--AAGGAAAA-TAAGT-G-TTGGCAGAAAA-CTAAT-TG---CTGCG-TTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---A-----------GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGT-TT-TTCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : ---TTACGG-AAACATAGAATAC-A-CTTT-TT-AATCC-CAA-GTA-AATATTGTTC--AAGAGT-A-G---AGTCTATC-TAT-AAAATGCTTCTC--A-ATCCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA---TAG
gi|18 : aaacatCATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA---T------T-TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTT
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTACTAGAT---A-TTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AGGGTT-CA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--AATA-AGGACTCC--AGAGCCTCT-C------------------------TTTGATCGTTACGGAAAAACA--GGATG---T-ACCG-AAACATAGAATAC-AACTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGT-AAGT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGTG-TTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACACA-GACTCGTAA-AT-ATATTTTA-GATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT-AA-TTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGTA-CGG--ATTA--TG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCA--CAATTGGCAATTT-GTAATA-TT---CTTTTT-ACAGTA-TTTT-A-ATAT-C-------ATATA-TAC-GAGATC-AATAA-C-TTACCTG-T-A--TATC-TG-TCAA---TC-AGA--T-TATGCGCCA-T-AAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--TAGT-G-TTGGCAG-AAA-CTATTCTG---C-TGA---TTTTT--AGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A-GAGT-A-G---AGTCTATC-TATAAAA-TGCTTCTCAA---TCCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGC---A----GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAACGGG-ATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AGG-TT-CT-TT-AG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT--ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T-------AAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAA-CTTT-AT-AATCCGCGATATAGAATATGTTTCATAAGAGTAA-GT--AGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA---TAGT--GTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-AGATTC-CATAAAAGAAAG-TG-CAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCA--CAATTGGCTATT--AGTATA-TT---CTTTTTAACAGTAATTGT-A-TTA---ATA-TCATTAT--TAC-GAGATCTAATAATCTCTACCTC-CTATTTATC-TGCTCAAAATTC-AGA-TTATTTGCGCCAGT-AAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAA-ATAGT-GTTTGGCAG-AAATCTATTCTGTTCTTTGA-TTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT---A-ATCCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAATTTAG--------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-TGA--A---ATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTTAAGATTC--ATAAAAGAAAG-T--CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GTGAA----CATCGC------------AA-----TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTAC-CAATTGGAAATTA-AAA-TA-TTTTGCTTTTTA-CATTATTTTTTG-ATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG--AAGGAAAATTTAGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTAC---ATGATAATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-CATAGGACTCT--AGAGCATATACAGG---------------------TTTGATCGTTACGG-AAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-GT-AATCC-CAA-GTA-AATATTGCTC--AAGAGT-A-G---AGTTTATC-TACATGCACGCCT-TGAAA-ATCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gTTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA-TT---CTTTTTA-CATTATTTT--G-ATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-C-A--TATC-AG-TCAA---TCA-GA-TT--ATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG--AAGGAAAA--AAGG-G-TTGGCAG-AAA-C-ATTTTG---GTGGA--TTTTTT--AGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtca
gi|8 : aaTATTC-CGTAACGGA-ATTGAAgttacggaatattgacgttacggatatatagattatttttaatagatcaacactttcacaaaaaattacgaggcatctggtgaactttacatctacattgtaat
blockSeqs : A . T GC T . . AA G . T . . C T . T . GT T . . C . ATGATAA . C CA TAGA A TACT TT T . A A ATG A A C C C G . C GGTTA A A C A C GT . G . AA T TCGAAG ATTA . A . . G AT T TC A A CG . ATG T A CCA T TC T . CT T . TA . . GT G . C T T . GTA C . TACTCAGT . . GTACC CCATCAG T CT A . CT . T A GA GG . . A . . . C C . AA . . A . A T C . AT T . G . A . C A TTG . . T T T ATATATA G . G TGA . GT G ATAT CAAC T . . TT . AATT . TT . . G . A . . TG G . AA T . C N NNNNNNNNNNNNNNNNNNNNTCTC A . TT . A A . . GCGAT G AT A A T A A A CAAAT T . C GC A G C TAGTGTGT GT TG . . GT ACAA G TA A GCGCATATCC GACATC C GG T T T AA T G . AA C . G G T . A T CATTG G ATA A . G AA A C T . . T . ACAG TAAAA T CA A T T AT GGTCATATTA A G . CC TT A . TTG A A TG . . AT AG C T T CTATT . C AAT A AT A G . AA A C . T A CT TT C T . TC C TTC TT . ACT C TGCC T A .
blockSeqs : . . . T . . . . . . . . . . T . . . . . . . . . TAGATA . . T . . . G A . . . . . . . . A . . . TT . . . . G . . G . AA . . TCC . . . . A T . . . . . . . A A C . . T . CT T . GT . . T G . . . . . TA . . ATCT . . . TG T . . . . . . . . TA . . T . . . . . . . . . . . . . . . T C . . . . . A A . . . . . . AATTT . . . A . . . TT A . . . . . . . T . . G . . . . . . . A T . C A AGG A . TT . . . . . GCGAT G AT . . T A A A CAAAT T . C AA C G C TAGTGTGT GG TG . . GT ACAA G TA A GCGCATATCC GACATC C GG T T T AA T G . AA C . G G T . A T CATTG G ATA A . G AA A C T . . T . ACAG TAAAA T CA A T T AT G C G . CC T A . TTG A T TG . . AA AG C . . ACAA . . . A AT . . . . . . . . G . TT C . . C C . TT . ACT T T C . .
blockSeqs : . . . G . . . . . . . . . . T . . . . . . . . . ATAA . . C . . . A A . . . . . . . . A . . . TT . . . . G . . G . AG . . ATA . . . . A C . . . . . . . . T C . . . . T . . AT . . T . . . . . . TA . . T . . . TG . . . . . . . . . TT . . T . . . . . . . . . . . . . . . T C . . . . . A A . . . . . . ATG . . . A . . . TT A . . . . . . . T . . . . . . . . . . A . . A . . . . T . . . . . CAA . A . . . . A A GAAA T . A AA C . C ATTTAG GG . . . T A . . . CAT . . . . A . A C . . A . . . . G . A T G G TT A . . GA . . . . . . . . AA A . . A . . . C T . C A A . . . T A . . AA A . . . ACAA . . . A T . . . . . . . . G . A . . . C C . T . A T T C . .
blockSeqs : . . . G . . . . . . . . . . A . . . . . . . . . A . . C . . . . . . . . . . . . . T . . . G . . . . G . . . . . . . T . . . . A . . . . . . . . . . AT . . A . . . . . . . . . . . . . . . T C . . . . . A . . . . . . . AG . . . A . . T . . . . . CAA . . . . . . A A CAA T . A TA A . C ATTTAG G . . . T A . . . CAT . . . . A . A C . . A . . . . G . A T . T TT . . . A . . . . . . . . AA A . . A . . . T T . C A . . . . T A . . A . . . . TA . . . . T . . . . . . . . . . . . . . . C . . . A T . T . .
blockSeqs : . . . G . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . CA . . G TA A . A TTT G . . . . . . . . T . . . . . . . . . C . . . . . . G . . A . . . . CA . . . . . . . . . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : A . A . . G A . . A . . .
blockSeqs : . . A .
blockSeqCons : **** G** ** ** *** ** TAA******* ** C***** ********* N** ** ** *** **** *** *** ** T**** ** ***** ** A** *** T**** CGA** A* *** CAA** ** N* ATTTAGTT***** ** A***** *** CAT******* ****** A* ** ** G**** **** AA***************** ** ** C** A* *** A** AA A* CA**** T* ** C* T* **
originalCons : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC---AT---AATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG---TTACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-AAGAGT-A-GT--AGTCTATCATACAAAAATGCTTCTCAAA-ATCCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAA---TAGT--GTGTAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGA--ACAAATATGCTTCCGC-TAAACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTAAGATTC-CATAAAAGAAAG-TG-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAAACAGCATCGCTA---------AAA-----TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAAATTTTTAT----------TTCATCAAGGTAG-TCAC-CAATTGGCAATTA-AAAATA-TTTTGCTTTTTAACATTATTTTT-G-ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA-TTAGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
finalCons : CCATTCTCC-CG----C-AAAAG--GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTACTAA-------TTT--GAA-AGTTTTCGCCACAC-----CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACAN--GG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAAT----AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTGA--CTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATGT----ACGG-AAACATAGAATAC-A-CTTT-AT-AATCCCGA--ATA-AATATTGTTCA-AAGAGT-A-G---AGTCTATCATACAAAAATGCTTCTCAA--ATCCATTTCTCTTCATCGTC--TTTCAGGN-TAATCAAATG-ACATGAACAAAATTTAGTT-----AAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGTGAA-----ATATGCTTCCGC---AACAAGTAAATCAAAATTTTCCAT-------TTACTAT------TCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTTA-GATTC--ATAAAAGAAAG-T--CATGATATTTTGTT-AAATTTGGCAGTAG----TATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GTGAA----CATCGCAA-----------------TNACGGACT--TTGTGTCCTAAAAAAGATGTNAATGTCAAA--TTTTAT----------TTCATCAAGGTAG-TCAC--AATTGGCAATTA-AAAATA-TT---CTTTTTAACATTATTTTTA--ATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTGCA----TATC-TG-TCAA---TCAAGAT-T-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG--AAGGAAAA--TAGT-G-TTGGCAG-AAAC-TATTCTG---CTTGAT-TTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1111 111 11 11 444444444 11 111111 1111 1111 11 333333333 111 111 11111 11 222222 1111 11 11 11 11 1 222 111 1 11 1 11111 1 1 1 111 11 1 1 22 1 11 2222222 1 11 4444444444 1 1 22222 3333333333 333333333 11 1 1 11 11 11 111 1111 1 111 11 111 11111 11111 111 33333333333 11 111 111 11 1 11111 2222 1 1 1 333 1 2222 111 1111 444444444 1 1 2 2222 11 11 1 1 1111 11 000000000000000000000000 11 2222 22222 1 22 11 1 1 11 11 1 5555555555555 1 11 4444444444 1 333 1 3333333333 444444 1 22 1 1 1 2 1 1 11 111 1 1 11 33333 111 1 1 11 2 2 2 1 4444 7777777777777777777 22 1 1 11 3333333333 1 22 22 111 222 1 1 11 22 1 333333 111 1 22 1 111 2222 1 11 111 22 111 2222
lowQualScore : 6 4444 6 777 6 6 6 99 6 99 6 99 444 6 1 6 8 11 11 8 8 8 8 8 666666666 0 11 8 888888 7777 8 7777 22 6 0 222222222 8 8 444 8 8 8 8 222 8 8 8 0 55555 8 8 8 8 0 0 5 11 8 3 8 22 8 333333 7777 8 8 0 0 0 11 8 0 3 11 8 11 8 8 33 0 0 888 9 1 666 0 33 0 3 0 77777 3 0 11 0 0 111 22 0 0 55 0 33 3333333 0 33 6666666666 0 0 55555 6666666666 999999999 33 0 0 11 11 8 8 0 11 22 8 8 1 444 0 8 7777 8 6 444 11 444 8 8 99 6 6 6 6 77777 1 6 6 99 6 66666 3 5 111 6 6 6 6 6 22222222222 8 11 8 111 0 444 11 0 0 22222 4444 0 0 0 222 0 1111 777 4444 000000000 0 2 0 0 1111 33 33 0 0 4444 3 33 1 5 111111111111111111111111 3 11 5555 8 8 8 8 8 44444 3 00 6 6 88 5 3 2 66 55 5 66 66 44 4 1 55 3333333333333 0 88 99 6 0000000000 0 666 5 0 11 9999999999 666666 0 3 55 0 1 0 0 0 1 0 8 8 6 6 11 444 6 3 7 44 3 3 55555 2 555 2 5 5 4 1 00 0 0 0 8 8 0 8 8 2222 1111111111111111111 1 22 0 0 0 1 0 88 5555555555 3 6 6 22 11 7 111 333 8 1 66 6 6 66 33 3 6 6 777777 6 6 111 5 00 6 6 6 99 6 6 6 6 7 111 0000 3 6 6 33 1 111 00 99 888 9 7777 3 6 6
lowQualScore : . .... . ... . . . .. . .. . .. ... . . . . .. .. . . . . . ......... . .. . ...... .... . .... .. . . ......... . . ... . . . . ... . . . . ..... . . . . . . . .. . . . .. . ...... .... . . . . . .. . . . .. . .. . . .. . . ... . . ... . .. . . . ..... . . .. . . ... .. . . .. . .. ....... . .. .......... . . ..... .......... ......... .. . . .. .. . . . .. .. . . . ... . . .... . . ... .. ... . . .. . . . . ..... . . . .. . ..... . . ... . . . . . ........... . .. . ... . ... .. . . ..... .... . . . ... . .... ... .... ......... . . . . .... .. .. . . .... . .. . . ........................ . .. .... . . . . . ..... . .. . . .. . . . .. .. . .. .. .. . . .. ............. . .. .. . .......... . ... . . .. .......... ...... . . .. . . . . . . . . . . . .. ... . . . .. . . ..... . ... . . . . . .. . . . . . . . . .... ................... . .. . . . . . .. .......... . . . .. .. . ... ... . . .. . . .. .. . . . ...... . . ... . .. . . . .. . . . . . ... .... . . . .. . ... .. .. ... . .... . . .
lowQualScore : 7 2222 7 555 7 7 7 22 7 22 7 22 000 7 0 7 0 00 00 0 0 0 0 0 666666666 8 00 0 222222 0000 0 0000 00 0 8 000000000 0 0 000 0 0 0 0 000 0 0 0 8 66666 0 0 0 0 8 8 0 00 0 2 0 22 0 000000 6666 0 0 8 8 8 00 0 8 8 88 0 00 0 0 88 2 0 000 8 0 222 0 88 2 2 0 22222 2 0 55 0 0 000 55 0 0 55 0 88 2222222 0 88 5555555555 0 0 00000 8888888888 555555555 88 0 0 00 00 0 0 8 00 00 0 0 4 000 8 0 0000 0 0 000 00 000 0 0 22 7 7 7 7 55555 0 7 7 22 7 77777 2 7 777 7 7 7 7 7 22222222222 0 00 0 888 8 000 00 2 0 00000 8888 0 0 0 000 0 2222 555 8888 000000000 0 5 0 0 2222 88 88 0 0 8888 2 88 0 8 222222222222222222222222 2 00 0000 0 0 0 0 0 44444 3 77 7 7 33 5 2 0 11 77 0 99 77 11 9 4 77 0000000000000 8 33 22 7 8888888888 0 000 4 6 44 2222222222 000000 6 2 00 6 4 8 6 6 4 0 0 0 0 0 00 000 0 2 2 00 5 2 00000 5 888 0 7 0 3 4 55 4 0 4 0 0 6 0 0 0000 0000000000000000000 0 00 8 6 6 0 6 33 8888888888 5 7 7 55 22 3 777 333 0 7 55 7 7 77 22 3 7 7 000000 7 7 777 5 77 7 7 7 22 7 7 7 7 7 777 3333 3 7 7 33 0 777 77 22 222 8 2222 7 7 7
consensus : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTACAT--TA---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG----TACGG-AAACATAGAATAC-A-CTTT-AT-AATCCGCGATATA-AATATTGTTCA-A-AG-AGTAG--AGTCTATCATACAAAAATGCTTCTCAAAT--CCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAAAT--TTAGT---TAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGT----GAACAAATATGCTTCCGCTA-AACAAGTAAATCAAAATTTTCGCGCATATCCTTACTATGACATCTCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTT-AAGATTCCAT--AAAAGAAA---GTGCATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GT-GAAACAGCATCGCTAA--------AA------TNACGGACTCATTGTGTCCTAAAAAAGATGTNAATGTCAAA--TTTTAT----------TTCATCAAGGTAG-TCAC--AATTGGCAATTA-AAAATA---TT---CTTTTTAACATTATTTTT-GATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG---AAGGAAAA--T-AGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
Reference ( family-1199 ) : CCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGANAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTAC----TA---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACA--NGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAGACT-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT-TATGCA-ACTAGCGAA--A-TGTTCAAAG-TATT--ATCTCCG-TTTTT-TGGTGAAATGTGNAC--AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-GT-GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T------TAAT-GCGA-TTT-----CAGAAAC-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TANNT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATATTC-GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCNTATACAGG---------------------TTTGATCGTTACGGAAAAACA--GGATG----TACGG-AAACATAGAATAC-A-CTTT-AT-AATCC-CGA-ATA-AATATTGTTCA-A-AG-AGTAG--AGTCTATCATACAAAAATGCTTCTCAAAT--CCATTTCTCTTCATCGTC--TTTCAGG-NTAATCAAATG-ACATGAACAAAAT--TTAGT---TAAGAAAATATGTGTGGTTTCAGT--GAAAA--CAGAAAA-GGTTGT----G---AAATATGCTTCCGC---AACAAGTAAATCAAAATTTTC---CAT----TTACTAT------TCCGGCAACTTAATGGTGATTTTGCCATGCATTTACTCTAACACAAGACCCGTAAGAT-ATATTTT-A-GATT-CAT--AAAAGAAA---GT-CATGATATTTTGTT-AAATTTGGCAGTA----GTATTTCCTTGTTT-TNTAAATAAAATCTATTATTC-CGTAACGGG-ATTAAATGATCCATCATGTAC-AAACGTT-TTC-GT-GAA----CATCGC-----------AA------TNACGGACT--TTGTGTCCTAAAAAAGATGTNAATGTCAAA--TTTTAT----------TTCATCAAGGTAG-TCAC--AATTGGCAATTA-AAAATA---TT---CTTTTTAACATTATTTTT-AATAT-CACA-TCAATATA-TAC-GAGATC-AATAA-CTTTACCTG-C-A--TATC-TG-TCAA---TCAAGA-TT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGGAATG---AAGGAAAA--T-AGT-G-TTGGCAG-AAA-CTATTCTG---CTTGA-TTTTTTT--AGGACTGCCTTATCGT---GACTTTTCC-AAT-TCC
gi|1 : TTCTCC-CGAAAAC-AAAAAG-GGTAA-AATGTAATT--TTCAGAA-AAACCCGCAA-AATTTCGAAAGTGGATTGGAGTAGGA-AACTGAAAAGTTAA-ATAAATGGAAA--AAGA-AAGGACATGAT-TGATGTACAT--TA---ATTTTTGAA-AGTTTTCGCCACATATAC-CACTAGTATAGATT----GATCA-CAATCATATACTG----ACGGA-ACCTATTAATTACCCTGTTACGCCAGCGGGGG-AAC-ATAG---CA-T-GCTCTAAG-GA-CGACATTTGG-TTCCT-TTTAG--TT-T-TTGGTA-G-ACAT-GTA--ACAA-GG--TGAAAAAACATTCGACAGTTTTAGAT-ACGCTGTC------AAAAAGGCT-TACAGTA-TATGCATAG-------AATGTTTTTAACGGAT--AGG-TATGCA-ACTA-CGAA--A-TGTTCAAAG-TATT--ATCTCCGTTTTTT-TGATGAAATGTGTA---AATTATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAATCAGTTCGTAGAATATGCAGAGCAAAAACATGTTTGATTG-TCCATTTGTGCATGGTGTTAAGTAACAA-GTCGAAAAT-AAACCTGGTTACTTTCT-GGTTTAAAAAGA--T------GAGTAGCGACTTT-----CAGAAAA-----GTGAACGCTTAAACTTGATAG--GTTAA-GTC--ACTTT-CTGTTGTTTA-CGG-AAA--TAGGTATGTACTCAGTATGAAACGACCTTAAATCTAAACCATAAATTTTT-TCTTGTTTTCGTCCTTGTT--TGATATATCGG-GCAAAATT-TTT-CATTGTTGGAATAAC-AGAAAA-TAGAAAAGAACATAA-AAAGAAGAAACAA-TATTTCCAATAACAAAGGTTAATTT---AGTCAAAA-GA-AAT-AGAGAAAA----A--TAGTGTCGAAA-TTTCT-AAAACTG----TAACAATTTAAAATCCA--TGATAACTTTAAT-AATT-T-TAAACTTCA-A-TGTG-CATAATAATATTCGGCATTTA----TTTAAACTGGT-GCCCCCGGTCTAAATAAGTCTTCAGTAAAATATGATTGTGACTTGTTTTTGCATCTTA--ACA-CACTCTAAAGATTGA-TATAGATCTCTAAAGAGCATATACAG-----------------------TTGATTGTTACGGAATAACATGGAATGATTTTACGGAAAACATAGAATAC-A-CTTTGATAAATCC---A-ATA-AATA-TGCTCA-AGAGTAATAA--AGTTTAT-AT-C--AAATGCTTCTC-AAT--TCATTTCTCTTCATCGTCCTTTTCAGGCTTAGTCAAATG-ACATGA--AGAATTGTTAGA---GAAAAAAATAGGTGTTTTTTCAGT--GAAAACTCAGAAAAGGGTTGGAAGAG---AAATATGCATTCGCGTGAAAACGTAAATCAAAA-TTTC---CAA----TTA-TAT------TCTGGCAATTGAAT--TGATTTT-CCATGCA-TTACTCTAACACAGTACGCGTAA-ATAATATTTTAA-GATT-CATACAAAAGAAAATTGT-CATAGTA-TTTGTTAAAATTTGACTG-A----GTATTTCCT--TTT-TCTAAA-AAAACTGATCATTCACGTAACGTG-ATTATAAG-TCCAT-ATA-ACAAAACTTTGTTCTGTAGAAT---CATCGCTATATATCCTTAAATATTTTCTCGGACT--TTGTGTCT--ACAAAGATTGCAATGTCAAA--TTTTAA----------TTCAT--AAGTAGTTCACAGAATTGGCGATTATAAAATAGCTTT---GGTTTTAGCATTA-TTTG-AATATAAACAGTC-ATATACTAC-GAGATC-AATAT-CTGTACATG-T----TATCTTG-TCAA---TC-AGA--T-TATGCGCCA-TAAAAC--AAACTTC-AACATGG-GCTATTGTTA-TCGAT-GAATG---AAGGAAAA--TAAGT-G-TTGGCAGAAAA-CTAAT-TG---CTGCG-TTTTTGTAAAAGGTTGCC-TATCG----GACTTTTCA-GATGTCC
gi|11 : aagccattcGAA-AACTGATTAGT-AATACAATTG--ATGTAAGA-A-GGGCATC-TCTG-AGTAC---------A-----GAA-A----TTACCACA----T----TAGAATA-ATC----GATGAACAAT-------------------ACCT--TAA---CTCTGTTAC---------GGAAACAACAG---CA-TAGCTCTGAG-GGCCGACG--CGT-TT-TTCTTTAG---G-T-TTGCGA-GCATAT-ACATT-TAACCC--T------GTATC-GCT--TTTTCGAT-ACGTTGTC------TACAAGTCC-CACG-TG-CATCTA---ATAGCTGCGTG---------G--GAAGC-TATGCATTCTAGCAAATCA-TGTTCAAAG-TATagttactgaattattgacgtttacggctgatatatagattaatttttaatatatcacactttcacaattagttttgtacgagggcatccggtgagcatgtagtgttgagatgacggtcatcataacgtaatgtttagataaaaaaatcggtgatctggtgaagtacagtggtacctcgggtggctatttgttgctcctgggaacaaatggctgctttttggaaaacatacgttcctttaatacaagacatggaagttttaaaaacattgatttgttgaaactgctaaccgtacaatttctaatagaagatgtaatcaattaaattttgtcaaaaatttgcaaaatcaaattgatgttaagagacccacagaatagataacaaaaattatttacatcccagcatttgcagctaaactagtgtgaagataaaaacacgttaaggaatcagcaacaatgttaataagcgtccaggtttccattttacagcccataaatttcataatctccttgattttgggagttgattttcattcgtaagtacatatcaaacaaacaccatccatactagttatcgaaaagaagagaatcaggcgcgtttctaaataaagatagagtaagaacagggcggctagatctgaaaatacagagatggagaccaacacttggggcctggcgacatctggatgttatatatttctacactgttggaaagagttatttaaagaaagtaacaataaagatg
gi|13 : --AC--T-CTGTTCGTTAATGGAAAA--TAGGT-TGTTCT-AGTATGAAACA---TTAAATTT-AACT----ATTTTT-TCTTG-TTTCG---TTGTT--AAA---ATC-G-GCAAA--TATTA-AATTGTTGGAATAAC-AG-GAA-T---AGTGAA-AAAA-AA--GAGAAGCAA-T-----TCAAAGAAAA--TAAATTT---A-TA-AAA-AATAAATAAATAAAA----AATTT--GTTGAAA-TT--TGAAAACTG--ACTAACAATTCAA---TCA--TGATAA
gi|14 : AAACA-----TT----TACGG-AAACATAGAATAC-A-CTTT-TT-AATCC-CAA-GTA-AATATTGTTC--A-AG-AGTAG--AGTCTATC-TAT-AAAATGCTTCTC-AAT--CCATTTCTCTTTATCATC--TTTAGGG-CTGCTT-AATG-ATAGTCACAAA
gi|18 : CATCGTC--TTTCAGG-CTA-TCAAATG-ACATGA-CAAA-----T--T---TAAGAAAA-ATGTGTGTTTTCAGT--GAAAA--CAGAAAA-GGTTtag
gi|19 : CAAA--T-TTT-AATTGTTGGAATAAC-AG-AAA-------------TAA-AA--GAGAAACAA-T-----TAGAAAAAAAAGTAAATTT---A-TC-GAA-GA-AAA-AG
gi|2 : TTCTCTACG----C-AAAA-GCGGTAATA-T-TCATTAATTCATGA-AAAA--GCAATAATTT--GAAGTA---TGGAGTAGGACAACTAATAAGT-AA-ATAAATG--AA--AGAATA-GGACATT-T-TG-TGTAC----TAGATATTT--GAACAGTTTTCGGCGCA----CACAATAGTATAGATTTAGAGATCA-CAATCATACACTGTACTGCGGTTATCTTTTAATTACCCTGTTAC---------GG-AAC-ATGGATGCAAT-GCTTTAAACGA-CGACA--AGGGTT-CA-TTTAGGGTTATATTGGTAAG-ACATAGTATTACAAGGGGTTG-AAAAGCAAT-GACAATTTTAGATTACTTTGTTTCGAAGAAAAAGATTATATA-TAATATCCATAGATAATTAAAGGTTTT--AC-GATAAAGT-CATGCA-ACTAGCGAA--AATGTTCAAAGATATTCGATTCTCG-TTTTTATGGTGAA-TGTGAACCAAATAATTTTCTTCATATACTTCTTTT-CTCAAATGATTGAAAT-AGTT--T--AA-AT-CAGATAAAAAACAA-TTGGA-TGGT-CATTGGT--ATGGT-TTAAGTAACAACGT-GAAAATTAAA--TGGGTA----CTCGGTTT--TCAGAATC------TAAT-GCGA-TTTGTACCCAGAAACCATCAG---ATGCTG---------AGCTGTTAAAG-CCTAC--TTCTGTTCGTTA-CGAAAGAGATATAT-TGTTCT-AGTATGAATCA---T-AAATTT-AACC----ATTTTTCTCTTGCTTTCG---TTGTGAAGAA---ATC-GAGCAAA--T-TTTTAATTGT-GGAAGAACCAG-AAAAT---AACTAA-ATAAGAA--CAGAAACAAAT-----TAAAAAAA---GTAAATTTTTGA-TC-AAATGA-A------GAAAA----A---G--GTTAGAAGTT--T-AAAACTGTGACTAACAAT-CAA---CCAGTTGATAAGTTTAATGAATTATAT-AACTTCCAACTGTATCAT-AT-ATATTT-GCA-TTAAATTTT---ACT--TTGCCCTC---------AAGTCTT-A-T-AAATATGAATGTGACTTG----TGCA--CTATGACAGCAC-CTAAAGAT--AATA-AGGACTCC--AGAGCCTCT-C------------------------TTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATAC-AACTTT-AT-AATCCGCGATATAGAATATGTTTCATA-AG-AGTAAGTAGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA-----TAGTGTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGT----GAACAAATATGCTTCCGCTA-AACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-A-GATTCCAT--AAAAGAAA---GTGCAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GT-GAAACAGCATCGCTAA--------AA------TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATGGTCATATTATTCAT-AAAGTAG-TCAC--AATTGGCAATTT-GTAATA---TT---CTTTTT-ACAGTA-TTTT-AATAT-C-------ATATA-TAC-GAGATC-AATAA-C-TTACCTG-T-A--TATC-TG-TCAA---TC-AGA--T-TATGCGCCA-T-AAAT--AAACTTC-AACAAAG-GCTATT-TTA-TCGAT-GAATG---AAGGAAAA--T-AGT-G-TTGGCAG-AAA-CTATTCTG---C-TGA---TTTTT--AGGA--GCC-TATCG----GACTTTT-C-AAT-TCC
gi|20 : ccatatTCTCA-CG----CTAGAA-T-GATAC-A-T-TAATT--TTCAGAAGAAAA--GCAA-ACTTT--GAAGCA---TGGAGTAGGA-AATTGATAAGT-g
gi|21 : TA-AATATTGTTCA-A--G-AGTAG--AGTCTATC-TATAAAA-TGCTTCTCAA-T--CCATTTCTCTTTATCATC--TT
gi|22 : ATATTT-GTT-AAATTTGGC---A----GTATTTCCTTGTTT---TAAATAAAATATATT-TTC-CGTAACGGG-ATTA
gi|23 : tCCATTCTCC-CG----C-AAAA-G-GGCAA-A-T-TACTT--TTCAGAA-AAAA--GCAA-AATTT--G
gi|3 : agCCATTCTCT-CG----C-AAAA-G-GGTAA-A-T-TCATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--AAGA-A-GGACATG-T-TG-TGTACA---TA---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGG-ACCTATTAATTACCCTGTTAC---------GG-AAC-ATAG---CA-T-GCTTTAAG-GA-CGACA--AGG-TT-CT-TT-AG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAAGCATT-GACAATTTTAGAT-ACGTTGTC------AAAAAGATA-TATA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGT--ATGCA-ACTAGCGAA--A-TGTTCAAAG-TATC--ATTTCAG-TTTTT---GTGAATTGTGAAC--AAATATTT-CT--ACTTACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAGTAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--T-------AAT-GCGA-TTT-----TAGAAAT-----G---ATGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TATTT-TGTTCT-AGTATGAATCA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-TTT-AATTGTTGGAAGAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----TAAAAAAAAAAGTAAATTT---A-TC-AAA-GA-AAA-AGAGAAAA----A--TG--GTTAAAG-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAATTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTC---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-TATAGGACTCC--AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGATCGTTACGGAAAAACA--GGATG----TACCG-AAACATAGAATACAA-CTTT-AT-AATCCGCGATATAGAATATGTTTCATA-AG-AGTAAGTAGTCTATCATACAAAAATGCTTCTCAAATACTCATTTCTCTTCATCGTC--TTTCAGG-ATAATACAATG-ACATGGACAAA-----TAGTGTGTAAGAAAATATGTGT-GTTCCAGT--GAAAA--CAGAAAA-GGTTGT----GAACAAATATGCTTCCGCTA-AACAAGTAAATCAAAATTTTC---CAT----TTGCTAT------TCTGGCAACTTAAT--TGATTTTGTCATGCATTTACTCTAACAC-AGACTCGTAA-AT-ATATTTT-A-GATTCCAT--AAAAGAAA---GTGCAT-ATATTTTGTT--AATTTGGCAGTA--------TTCCTTGTTTATATTAATCAAATCTATTATTC-CGT-AC-GG-ATT--ATG-TCCAT-ATGTAC-AAACGTT-TTC-GT-GAAACAGCATCGCTAA--------AA------TTACGGACTCACTGTGTTCTAAAAGAAAGGTTAATTTCAAAATTTTTATG---------GTCATAAAAGTAG-TCAC--AATTGGCTATT--AGTATA---TT---CTTTTTAACAGTAATTGT-ATTA---ATA-TCATTAT--TAC-GAGATCTAATAATCTCTACCTC-CTATTTATC-TGCTCAAAATTC-AGA-TTATTTGCGCCAGT-AAATAAAAACTTCAAACAAAGCGCTATT-TTATTCGATAGAATGCTAAGGGAAAA--T-AGT-GTTTGGCAG-AAATCTATTCTGTTCTTTGA-TTTTTAT---GGA----CCTATCG----GACTTTTTCAAAT-TCC
gi|4 : TACAAAA-TGCTTCT--AAT--CCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAAT--TTAG------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-T----G---AAATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTT-AAGATT-CAT--AAAAGAAA---GT-CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GT-GAA----CATCGC-----------AA------TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTACC-AATTGGAAATTA-AAA-TA---TTTTGCTTTTTA-CATTATTTTTTGATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTT-AGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCC
gi|5 : atTACAAAA-TGCTTCT--AAT--CCATT-CTCTTCATCGCT--TTTCAGG-GCTATCAAATGGACATGAAAAAAAT--TTAG------AAAGAATATGTGTGGTTTCAGTTGAAAAA--CAGAAAA-GCTT-T----G---AAATAT-CTTCCGT---AACA-GTAAATTCAACTTTTTGCGCATATCCTTACTATGACATCTCCGACCA-TTAATGGTGATTT-GCTAAGCATT-ACTCTAACACAAGACCATTAAGAT-ATATTTT-AAGATT-CAT--AAAAGAAA---GT-CATGATATTTGTTT-AAATTTGGCAGTACATTGTATTTCCTTTTTT-TTTAAATAAAATCTATT-TCC-CGTAACGGGGATTAAATGATCCATCATG-AC-AAACGTT-T-C-GT-GAA----CATCGC-----------AA------TAACGGACT--TTGTGTCCTAAAAA-GATGTAAA-GTCAAA--TTTTAT----------TTCATCAAGTTAG-TTACC-AATTGGAAATTA-AAA-TA---TTTTGCTTTTTA-CATTATTTTTTGATAT-CACA-TCAATATAGTACCGAGATC-AATAA-CTTTACCTGAC-AA-TATC-TG-TCAA---TCAAGAATT-TATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGATGACATG---AAGGAAAATTT-AGTCG-TGGGCAG-AAA--TATTCTG---CTTGATTTTTTTT--AGGACTGCCTTATCAT---GACTTTTCC-AAT-TCCgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|6 : atCCATTCTCC-CG----C-AAAA-G-GGTAA-A-T-TAATT--TTCAGAA-AAAA--GCAA-AATTT--GAAGTA---TGGAGTAGGA-AACTGAAAAGT-AA-ATAAATG--AA--GAGA-A-GGACATG-T-TG-TGTACATGATA---ATTT--GAA-AGTTTTCGCCACA----C-CACTAGTATAGATT----GATCA-CAATCATACACTG----ACGGA-ACTTATTAATTACCCTGTTAC---------GG-AGC-ATAT---CG-T-GCTCTAAG-GA-CGACA--TGG-TT-CT-TTTAG--TT-T-TTGGTA-G-ACAT-GTATTACAAGGG--TG-AAAA-CATT-GACAGTTTTAGAT-ACGTTGTC------AAAAAG--T-TACA-TA-TATCCATAGATAATTAAATGTTTT--AC-GATAAAGTATATGCA-ACTAGTGAA--A-TGTTCAAAG-TATT--ATCTCTG-ATTTT---GTGAAATGTGTAC--AATTATTT-CT--AATAACTTCTTTTTCTCAAATGATTGAAAT-AGTTC-T--AATAT-CAGAATAAAAACAT-TTTGA-TG-T-CATTTGTG-ATGGT-TTAAGTAACAA-G--GAAAAT-AAA--TGG-TA----CT-GGTTT--TCAGA--TACTCAGTAAT-ACGA-TTT-----CAGAAAT-----G---ACGCTT--------TAG--GTTAA-G-C--AC--T-CTGTTCGTTA-CGGAAAA--TAATT-TGTTCT-AGTATGAAACA---TTAAATTT-AACC----ATTTTT-TCTTG-TTTCG---TTGTT--GAA---ATC-G-GCAAA--T-CTT-AATTGTTGGAATAAC-AG-AAA-T---AACGAA-ATAA-AA--GAGAAACAA-T-----T-AAAAAAAAAGTAAATTT---A-TT-AAA-GA-AAA-AGAGAAAAATATA--TA--GTGAAAA-TT--T-AAAACTG--ACTAACAATTCAA---CCA--TGATAACTTTAAT-AATT-T-T-AACTTC--A-TGTA-CAT-AT-ATAT---GCA-TTA----TT---ACT--T-GCCCTT---------AAGTCTT-AGT-AAATATGA-TGTGACTTG----TGCA--CTA--ACA-CAC-CTAAAGAT--A-CATAGGACTCT--AGAGCATATACAGG---------------------TTTGATCGTTACGG-AAAACA--GGATGT---TACGG-AAACATAGAATAC-A-CTTT-GT-AATCC-CAA-GTA-AATATTGCTC--A-AG-AGTAG--AGTTTATC-TACAgttacgggaaatattaacttacggattatatagattattttaatagatcgattaaacactttacaaaaaatttacgcaggcatccggtgaacatctatgttgaatggggtaccatataaacgtaatgtttatttaaaaacgtgtatctggtgaagaccagtggtaccgcttaatttctctataaatgcgttatggaaaacattagttccttaaacaagacatattgaaattaaaactatttttgtggaaattgcaaacccacaattctgaagagacgttatcaattaaattttgtcaagaatttccaatcaaatgacataagaacccacagaataaaacaaaattatttacatgttttgccactatagttgttggaaattaaaaacaccgttaccgggaatgcataacatggttcaagcgacaggccattatacaccattaaattcataattccttttgggaggcagattttatcgtaagtaatatcaacaaaacatatacattatgcgaaaaacaggccgtttctataaagttagacacgctagattgaaacacagaacaaacattcgctaaattaacaacatggcacattgggcattattaatatattttctacactttgggaaagaggtatttaagaattaaacaataaagatgcctggggaaattgactgttttatgtttactttacatcttaattacgtagttgatacaattactttacgttacaaacactttcaggaattcagcatctcttattctttacaagcgacatgaattctatataaaagtaaccatatacaggaggaa
gi|8 : gAA--TTTTAT----------T-CATTAAG-TAA-TCAC--AATTGGCAATTTTAAAATA---TT---CTTTTTA-CATTATTTT--GATAT-CACA-TCA--------------T---ATAA-CTT-ACCTG-C-A--TATC-AG-TCAA---TCA-GA-TT--ATGCGCCA-T-AAAT--AAACTTC-AACAGAG-GCTATT-TTA-TCGAT-GAATG---AAGGAAAA--A-AGG-G-TTGGCAG-AAA-C-ATTTTG---GTGGA--TTTTTT--AGG---GGCTTA-AGTGCCGGCCTTTTC-AAT-TCCtgcacgccttgaaaatctca
gi|8 : TATTC-CGTAACGGA-ATTGAAgttacggaatattgacgttacggatatatagattatttttaatagatcaacactttcacaaaaaattacgaggcatctggtgaactttacatctacattgtaat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAAGGTATTTGCAGATATAAAATTTTGTTGAAATACAGCAACAATACAGCAATATTTTCTGACAGAAGTTTGTAAAGATTGTATAATCAAGGTGGCGTAACAGCACACCAAGTCAAGCAAACATTTTTGATAGTTTTTGACGATAAGGTGCAATAAAACTTGATACGGATACAATATAGCTTAGTCAAGCCATTTAACACCATAAATTCAGGATCGCTGGCAGTGAGGTGATTGTCATTGTAACGTGAGTAAATAAGCCATAAACTACCATGGGAAAACAGCCGATTCATAAATATTGAAAAATAAAACCCTGCAAACATTCCTGAATAAACAAAACTGGCGATACTAGATGTTTGTAGATTTATACACTTTGGACAGGAGTTATTTTAGAAATAAAACAGAATAAAATGTCTCCAATTTTTAGTTTTATTTTCATTTCACACCTAATCGTGTAGATGATGTGAATTACTTTATATGCAAAAAACTTTCAGAACTTAGCATTTGTTATCCTTTACTAGCGACATGAATTCAATAAAAGTCGACCATATGTAAAGGAAATG
Unaligned ( gi|9 ): GATTATATTATATAATACAAATTCACACTTTCACAAAAAAAAACTTACGAGGGGCATCCGGGTGAACTCTTTGAGTCTGAATGAGTTTCACATATAAACGTGCATGTTTATAACGTGATAATATCTGGTGCTGTTCTCGCTTATATTCTCTATTTAAATGGCAGTTATGGAAAAACATTAAGTTTCTTAAACAAGAAAGTATGAAGATATTTAAAACACTTTTTGTCTGAATGCTACCCAAATTTCTGCTAGAAGATGTATCAAATTAATTCGTGTGTATGAATTTCAAT
Unaligned ( gi|10 ): TTTATAAAAACCGTGTAATCAGGACGAGGGACAGTGTGACAACTTGTTAATTTCATCTATAAACTGCCGCTATGAAAACATAATTTCTTAAACAAGAACTATAGCAGGAGTTAAATATTTTATTTGAAAGCAACTTACCAAATGATAGAGATGTATCAAATGAATTTATCAAAAAATTATACGGCAATTAAATGACCTAACCAAGCCCCAAAGATAAAAAATATATATTTATCATAGATTGGAGCATTATACGTGTGGAAAATAAAAAC
Unaligned ( gi|12 ): ATTTAAGTCTACAAACTACAATAGATAAGAACTGCCTGTAAATATAACATGTGACTGTAATATAACTAGTTGATACATATTAACAGTCTAATTACGGTAGGTCTGATAACAAAACCTTACTTTACGGTACAAACACTTTTCAAGGAATTCAGCATCTCTTATTCTTACTAGCGACATGAATTCTATATAAAAGTTAACCATAGTTACAGCTGAGAAGCAATGG
Unaligned ( gi|15 ): TTTTTCGATGAAAGTAATGCAAGATTGCAGAAGATATTTTAAGGTAGATTAGATTCACGTTTTTATGGGAAAATTAACCATGTATGAAAAAATTAGTTCTCCATGTGCTGGATCTCTCAAGTTTAATGATTGTAAC
Unaligned ( gi|16 ): TTTACATCTACATTGTAATTACGTAGTTGATACAATTACTTTACGTACAAACACTTTCAGGAATTCAGCATCTCTTATTCTTTACTAGCGACATGAATTCTATATAAAGTAACCATATTCAGT
Unaligned ( gi|17 ): TTTCTGATAGTGATGCATCAATTAAATTTTGTCAAGAATATACAATCAAATGACATAAGTGCCCACATAATAAAAAA