lowQualScore : 111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111 11111111111111 11111111111111111111111 1111111111111111111111111111 1111111111 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111111111111111111111 111111
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666 2222 7777777777777 22222 111 8888888888888888888888888888888888 2 11 33 5555555555555555555555555 111 4 1111 11 22222 5555555555555 111 11 22 5555555555 44 444 33333 44 4 4 3333 222 4444 2 11111111111111 1 1 555 1 4 33 2 11111111111111111111111 33333 1 1 11 8888888 2 11 2 1 444444 2 2 2 666666666666 2 2 55 4 999999 2 555555555 1 2222222222222222222222222222 2 1 1111111111 33333 2 1 5555555555555 2222 777777777777777777 1 444 2 9999999999999999999999 1 222 4 22 2 22 2 333 22 1 33 66666 333 2 4 1 33 22 1 1 2 2 000000000000000000000000000000000000000000000000000 55555 2 2 1 4 22 000000000000000000000000000000000000 333 1 4 444 2 2 2 222222222222222222222222222222222222222222222222222222222222222222222222222 333 4 33 33 33333333333 44 111 11111111 1 2 111 22 11111 33 111 777777777777777777777777777777777777777777 3333 22222 33 777777777777777777777777777777777777777777777 3333 11 666666 11 111111111111111111111111111111111111111111111111111111111111 55555555 2 999999999999999999999999 1 1 444 1 222222 1 3333 22 2 55 555 4444 2222 4444444 444 555555 3333 4 2 33 000000 2222 3 22 77777777777 1 2
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222 8 8888 3333333333333 22222 999 6 0000000000000000000000000000000000 2 7 77 66 2 4444444444444444444444444 444 0 7777 0 33 22222 3 6666666666666 3 777 33 33 0 7 9999999999 6 66 555 99999 22 0 0 5555 222 2222 0 33333333333333 5 5 555 5 0 2 55 3 0 6 99999999999999999999999 55 33333 5 5 44 4 2222222 4 0 77 0 5 222222 0 7 0 111111111111 7 0 55 0 111111 0 666666666 3 4444444444444444444444444444 2 0 5 5555555555 33333 0 5 0000000000000 5555 555555555555555555 5 111 0 2222222222222222222222 5 000 0 77 0 77 0 444 77 5 00 44444 333 3 2 3 0 2 55 44 3 6 3 0 0 555555555555555555555555555555555555555555555555555 22222 0 0 5 0 44 77 888888888888888888888888888888888888 3 888 5 0 111 6 8 7 7 3 555555555555555555555555555555555555555555555555555555555555555555555555555 111 0 00 00 44444444444 33 2 111 6 3 77777777 0 7 3 3 8 8 3 444 77 8 55555 0 999 0 00 444 333333333333333333333333333333333333333333 2222 99 8 22222 8 88 555555555555555555555555555555555555555555555 66 5 3333 7 88 5 5 555555 66 5 22 666666666666666666666666666666666666666666666666666666666666 99999999 0 444444444444444444444444 5 5 55 888 666 66 5 999999 5 2222 77 0 55 888 2222 5555 2 2222222 111 222222 2 5555 0 0 00 888888 3333 8 8 5 8 77 00000000000 0 7
lowQualScore : ............................................................... . .... ............. ..... ... . .................................. . . .. .. . ......................... ... . .... . .. ..... . ............. . ... .. .. . . .......... . .. ... ..... .. . . .... ... .... . .............. . . ... . . . .. . . . ....................... .. ..... . . .. . ....... . . .. . . ...... . . . ............ . . .. . ...... . ......... . ............................ . . . .......... ..... . . ............. .... .................. . ... . ...................... . ... . .. . .. . ... .. . .. ..... ... . . . . . .. .. . . . . . ................................................... ..... . . . . .. .. .................................... . ... . . ... . . . . . ........................................................................... ... . .. .. ........... .. . ... . . ........ . . . . . . . ... .. . ..... . ... . .. ... .......................................... .... .. . ..... . .. ............................................. .. . .... . .. . . ...... .. . .. ............................................................ ........ . ........................ . . .. ... ... .. . ...... . .... .. . .. ... .... .... . ....... ... ...... . .... . . .. ...... .... . . . . .. ........... . .
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222 0 6666 5555555555555 77777 888 7 5555555555555555555555555555555555 5 5 55 22 2 0000000000000000000000000 888 0 8888 8 88 88888 2 8888888888888 2 555 88 22 8 3 3333333333 0 00 000 55555 55 0 0 0000 000 5555 0 00000000000000 0 5 000 5 0 5 55 0 0 0 00000000000000000000000 00 00000 0 0 00 0 0000000 0 0 55 0 0 000000 0 5 0 000000000000 5 0 00 0 000000 0 222222222 3 3333333333333333333333333333 5 0 5 0000000000 55555 0 5 5555555555555 0000 555555555555555555 5 555 0 5555555555555555555555 0 555 0 55 0 55 0 555 55 5 00 55555 000 0 5 0 0 3 77 00 3 7 3 0 0 000000000000000000000000000000000000000000000000000 00000 0 0 0 0 00 00 555555555555555555555555555555555555 0 000 5 0 555 7 7 3 3 3 555555555555555555555555555555555555555555555555555555555555555555555555555 000 0 00 00 00000000000 00 5 000 0 2 88888888 0 5 2 2 0 0 8 000 00 0 22222 8 666 6 00 222 444444444444444444444444444444444444444444 8888 44 0 00000 0 00 666666666666666666666666666666666666666666666 99 0 4444 6 99 7 0 222222 99 0 00 777777777777777777777777777777777777777777777777777777777777 00000000 0 555555555555555555555555 0 5 55 555 000 55 5 555555 5 0000 55 0 00 000 0000 5555 5 0000000 555 000000 5 0000 0 0 55 888888 2222 0 0 0 0 00 66666666666 0 8
consensus : NNGCTTTTCTCGTGT-T-CACG-ACAG----ATAGCTAG-TA-CTACAA--CCGA---ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTTATTTGTTATC----GCCTTGC-GTGGCGAGGGAA-C-TTGGTGGTTCTTTTTA-GGCTAGGTGGCTATA---TAT-TATTTTTTAGAC--CTG--CC-TTGGTGG-CGGGGGAACCTTGGTG-GTTCCTTTTAGGG---CCT-AGGT----G--GGCCT-ATATATTTT-T-AGA-CCTG---CCTCG--GTG-GNNGGGAACCT--GTGG-GTTTCNTTTTAGGCCTAG---GTGG--CTATATATTTTCAGA-CCAT--GG-TGGTCGCGTGTTCGGCCTAGGTGAG-CCGTTTTCGC-CCTTGGTGGNNTTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATTATCAATTGCTCATATTATAGTGGTTCTTGTCTTTGTGCTTATATACTCTGGAGTGCAAACCAAGTTGGTCCTTGGGAGACACGAA-CTTGCACGTGCTTTCTCANTGACTGGCCGTTCAAGTGTTAGAGCTATTNNAAC-CNGTTCTGTT--TCNNTGTGAGCTGACGAAAGCGGTTCTATTTNNTTTNTATAA---ACAGTACATNAGTTATGTAACCTTNGTTTTTTAAAGACACATTTATT-GAGA-GAAATTTCGAGGTGCTTTGAGTTGA-GTTAAAATC-TCTCCCTGTTTAGATGGT--GACGTCANNNNNNNNNNGTGCACATAT-TTTGATTTGTCTC-GT-ACGTGGATTTTGA--TCATCA-GAAAT-GAGGGAA---------ATGA--TAGGA-ACGGA-ATTNCTATGCCTTGCAATCCAANNTATCCAAGGGACACTGACGCCCTAGTAGATTTAATCACGCCGGGATTG-TAGGCATGGGGATTTCTTCCGTTNGAGTGT-GATTAGTGCTGGTTGTGTGCCGTCGGGCATTTAGATTAATTTTAACCTATAT-AATCTTAACAGAACATGAAGTTTGTTCCAGATAGTATAATGCTCTTTCACAGATAAATTCCCGACATNGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGNGATGAGGGAANAAACGGGCATGGATCACGCTC-GAAGGAAGAATCCCT-TTGCCTACAA-CCCATTTAGCCTCGTGCCGAGAAAGTAA---CCAAAT-TGGTGAGTTTGGA-TTTTTGAT-GTTGATT-C-CTTGCC-TTCACGAGATC-CTAAGCATTTTTATTATCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCNACTANNGATTGATGAACATT-TTGGAATATATATTNATGATNGACTTTNAATCATATNTTTATTGCATT-AATGATGTTAATCCAATTGTCATTTTGG-TTTGCTAGCTATACA-GAT--CTTTA-GGTGATG-TGAATCTCGGAATATCNTCGNATATCAGTACATGTATATTTTNGNTTTGTTCACATGCCACTCATTCTTTGTTA-AAGACNAAGGAACATTTGGTAATTTTTTCATGCTTT-ACNAACTTTGGGT-T-GCCAATAAATA-TGAA---TA-TACTATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT-GA---G-TTTTTGTTTACAT-GATTNGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATGCG-GAGTTTTTTATGCC-CAG-A-CTAAACACATGATCTGA-ATGC--TGGAAGATATTAAA--ACTCACTGAGG----ATAGGG--GTAAAGAGC--CTC-A-T-GGT--T-AA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTGTCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGGTT-TATG-GGTT-AGCAATACT-CCAGTGTGGAGAACGTAGT-AGTGGTAATGTTGGATGANTGATGATATTATACCCACC-CACC-CCACTTGC-CCTTA-ACGGATGTGTTTTATNCGAGNGAAAAAAT-TCCCACNNTAAAGCATGTACATGTATGCATTTCTAATTCATGGTGATGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTCATA-TATGCTGCAANNATTNATACATGTGCAGTGGGTCNTGTTTACTATGGAGTGCAGGTGTTTTCATGTCNTCNNAATAT-TCAGAATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAAC--TAA-A-CATGAT-CTG-AATGCTG-GAAG--AT-TTA---AAA-CACTG-AGGAT
Reference ( gi|1 ) : GAGCTTTTCTCGTGTATGCACG-ACTA----ACAGCTAGGTC-CTACAAATCCGA--GACGTTCGACCTACACTGGGCAAGGTATTTT-AAC-TT-ATTTGTTATC-CGAGCCTTGTGGTGGCGAGGGCA-C-TTGGTGGTTCTTTTTA-GCCTAGGTGGCTATAAATTAT-TATTTTTTAGACACCTG--CT-TGGGTGGGCGGGGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCT-GGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCTG---CCTTG--GTGCGGGGGGAACCTA-GTAG-GTTTCTTTTTAGGCCTAG---GTGG--CTA-ATATTTTCAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCACCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT-GTCTTTATCACTGTATACTCTGGAGTGCAAACCAAGTTGGTCT---GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATTTAAACACG---CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGATTTAGTTTATATAATAAACAGTACATTAGTTATGTA-CTTTGGTTTTTTAAAG-CACATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAGGTGG-TTTTGAATTTATGAAGAAAT-GAGGGAACTT-TTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GATTTAATC-CGC--G-ATTGGTAGGCATGGGGATTTCTTCC-TT--AGTGTTGAT-ATGGCTGGTTGTGT-TTGTCGGGCATT-AGATTAATTTTAACCTA-ATGAATCT--ACAGAACATGAAGTTTGTTCCAGATAG-ATAATGCT--TTCAC-GATAA--TTC-GACAATGGAG--TTGAATATGCGTTTCTAATCCCTATGAAT-GCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGAGTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAAATCTCAACTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCTA-GCATTTT-ATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATAGAT------ACATTGTTGGAAT-TATAT-GAC-ATTCGTTTTAAATCAT--CTTTATTGCATTCAATGATGTTAGTCTAATT-TCATTTTGGCTTTGCTAGCTATACACGATACCTTTAAGGTGAT--TGAGT-----------ATTG-----------ATG-ATA-------------CA-ATGCCACTCATTC-T-GTTATAAGAACAAGGACGATTTGGTAATTTTTTCATGCTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA---TA-TAGTATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT-GA---G-TTTTTGTTTACAT-GATTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG---GAGTTTTTTATCCCTCAG-A-CTAAACACATGATCTGA-ATGC-GTGGAAGATATTAAAACACTCACT-AGG----ATAGGGGAGTAAAGAGC--C---A-T-GGT--T-AACTA-AAAAGCGGAAAGGTATG-TGA-TGAAGT-TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGAC--CGTAGTCAGTGGTAATGT--G-TGTATGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCCCCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAAC--T-A-A-CATGATGCTG-AATGCT--GAAG--AT-TTATAGAAA-CACTGAAGGATCACCGGG
gi|4 : GCTTTTCTCGTGT-T-CACG-ACAG----ATAGTTAG-TA-CT-CAA--CCGA----CGT-CGACCTAC--TGGG-AAGGTATTTTTAAC-TTTATTTGTTAT-----GCCCT-TGGTGGCGAGGGAA-C-TTGGTGGTTCTTTT-A-GGCTAGGTGGCTATA-------TATTTTT-AGAC--CTG--CC-TTGGTGG-CGGGGGAACCTTGGTG-GTTCTTTTTAGG----CCT-AGGT-------GGC-T-ATATATTTT-TTAGA-CCTG---CCTTG--GTG-GCGGGGAACCGT-GT-G-GTTT--TTTTAGGCCTAG---GTGG--CTATATATTTTCAGA-CC-TAGG--TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC--CTTGGTGGCAT-TAGTCAT--GCAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTTGTCTT-------ATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACGAA-CTTGCAAATGCTTT--CATTGACTGGCCGT-CAAGTGTTAGAGCT--TTAA----T---CTGTT--TCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTATAA----CAGTACATTAGTTATGTA-CCTTTGTTTTTTAAAG-CACATTTATT-GAGA-GAAA-TTCGAGGTGCTTTG-ATTGA-GTTAAA----TCTCTCTGTTTAGATGGT--GACGTCA
gi|6 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacGCTTTTCTCGTGT-T-CACG-ACAG----ATAGCTAG-TA-CT-CAA--CCGA----CGT-CGACCTAC--TGGG-AAGGTATTTT-AAC-TTTATTTGTTATC----GCCTTG--GTGGCGAGGGAA-CCTTGGTGGTTCTTTTTAGGGCTAGGTGGCTATA---TA-----TTTTTAG--ACCTG--CC-TTGGT-GGCGGGGGAACCTTGGT--GTTTCTTGTTAGG---CCT-AGG---TGG-----CT-ATACATTTT-C-AGA-CCTA---GATGGTCGTGTGTTGGG--CCTAGGTGA-G--CCGTTTT-CGCCTTG---GTGG--CT-----TT-----AGTCAT--GGCAGACTACGTGTTCGca
gi|13 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGCTTTTCTCGTGT-T-CACG-ATAG----ATAGCTAG-----TAC----TCGACCGACGT-CGACCTAC--TGGG-AAGGTATTTT-AAC-----TTTGTTATCACG----TTGC--TGGCGAGGGAACC-TTGGTGGTTCTTTtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|15 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacGCTTTTCTCGTGT-T-CACG-ACAA----ATAGCTAA-----TAC---------------TCAACC------GGG-AAGGTATTTT-AACTTT-ATTTGTTA
gi|7 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacTTTTTCGTGT-T-CACGGATCATAGTATAGCTAGTTAGCT-CAAACCTTG--AACCCTCGACCTA---TGTATAAG-TATTTT-AACTTT-ATTTTGTATC-
gi|7 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatcca-GCCTATGTGGCC-----TTATATATTTTCTAGAC--CTGTCCTCTCGGTGG-CGGGA--ACCTTGGTG---TTCATTTAGG----CCTAAAGT----GTGGGCCTAATATATtcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|6 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtT-TATTTGTTA-----TCG--CC-TTGGTGG-CGAGGGAACCTTGGTG-GTTCTTTTTAGGGC----T-AGGT-------GGC-T-ATATATTTT-T-AGA-CCTG---CCTTG--GTGGCGGGGGAACCT---TGGTGTTTCTTGTTAGGCCTAG---GTGG--CTATACATTTTCAGACCTA----GATGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG--CCTTGGTG-GCTTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGG--CCTTGGTGGCG-AAGCATAGTTATTATCAATTGCTC
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactGGCCTTATATATTTTCT-AGA-CCTGTCCTCTCG--GT--GGCGGGAACCT---T-G-GTGTTCATTTAGGCCTAAAGTGTGGGCCTA-ATAT
gi|9 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtTCATATTATAGTGATTCT-----TTGTGCTTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CGAA-CTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTAAC-CGGTTCTGTT--TCGTTGTGAGCTGACGAAA-CGGTTCTATTTGTTTTATA------ACAGTACATAAGTTATGTAACTTTG-TTTTTTAAAGACA-ATTTATT-GAGA-GAAATTTCG-AGTGCTTTGAGTTA--GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAat
gi|16 : GTGCACATAT-TTTGATTTGTCTC------GTAGATTTTGA--TCATCA-GAAAT-GAGGGAA---------ATGA--TAGGA-AC-GA-ATT
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT-ACGTGG-TTTTGA--TTATCA-GAAAT-GAGGGA-CTTATTTATATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GATTTA-TCACGC--GGATTG-TAGGCATGGGGATT-CTTCC-TTTGAGTGT-GATTAGTGCTGGTTGTGT-C-GTCGGGCATT-AGATTAATTT--ACTTA--T-AATCTTAACAGAACATGAAGTTTGT-CCAGATAGTATAATGCT--TTCAC-GATAA--TTCCGACATGGGAG--TTGAATATTGGTTTC-AA-CCCTATGAAT-G-TGAGATGAGGGAACAA-CGGGCATGGATTACGCTT-GAAGGAAGAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA---TGGTGA-TTTGAA-TTTTTGAT-GTTGATT-C-TTTGCC--TTACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGA----TGACTTTAAATCATATTTTTATTGCATT-AATGATGT--ATCCAATTGTCATTTTGG-TTTGCTAGCTATACA-GAT--CTTTA-GGTGATG-TGAAT-----------CTCGGATATCAGTACATGTATATTTTGATTTTGTTCA-ATGC-ACTCATTC-TTGTTA-AAGA-CAAGGAACATTTG-TAATTTT--CATGCTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA---TA-TA-TATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT-GA---G-TTTTTGTTTACAT-GATT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATGCA-GAGTTTTTTATGC--CAGAA-CTAA--ACATGATCTGA-ATGC--TGGAAGATATTAAA-----CACTGAGG----ATAGG---GT-AAGAGCCTC---ATT-GGT--T-AA-TA-TAAAGCGGAAGGTCATG-TGA-T---GTGTCGGTCAT--TCTT-TAGAC-ATCCA-TGCTT-GT--TATG-GGTT--GC-ATACT-CCAGTG-GGA----G-AGT-AGTGGTAATGTTGA-TGATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAGAAAAAAAA--TCCCATAGT-AAACATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-CCAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAAC--TAA-A-CATGAT-CTG-AATGCT--AGAG--ATATTA---AAA-CACTG-AGGAT
gi|3 : AGAAATCGAGGGAA---------A-GAA-TAGGA---AGACATTGTT-TGCCT-GCAATCCAAAG--------GGACACTA-CGC-CTAGTAGATTTAATCACGCCGG-ATTG-TAGGCATGGGG--TTCTTCCGTTG-AGTGT-GATTAGTGCTGGT-GTATGTCGTCGGGCATTTAGATTA--TTTA--CTATAT-AATCTTAACAGAACATGAA-TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA--CCTATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGCATT-AATGAG-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAAT-TGGTGAGTTTGGA-TTT-TGAT-GTTGATT---CTTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCTA-TCATATTCACTCTTTCGTGTCAGAATGGGAATCA-CTAGTGATTAATGAACAT--TTGGAATATATAT-TATGATGAACTTTCAATCAT--ATTTA-TGCATT-AATGATGTTA-TCTAATTGTCATTTTGGTTCTGC-AGCTATACA-GAT--CTTT-AGGTGATAGTGAATCTCGGAATATCATTAC----------ATGTATATTTTTGATTTGTTCACATG-CACTCATTCTT-GTTA-AAGACGAAGGAACATTT-GTAA---TTTCATGCTT--ACAAACTTTTGGCGT-GCCAATAAATACTGAA---TA-TATTA-TTTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTGGA---G-ATTTTGTTTAC-T-AAGTTGAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATGCA-GAGTTga
gi|2 : tttgagtgacatatttgattgtcATCACACTC-AAAGGAAGAATCCCC-ATGCCTACAA-TCC
gi|10 : tgcacatattttgatttgtctcgtacgtggttttgattatcagaaatgagggacttatttatatgataggaacgtaattcctatgtcttgcaatccaacttatccaagggacactgacgccctagtgatttatcacgcT-CCATTTTGG-TTTGCTAGC--TACACGAT---TTTA--GTGAG--TGGGtagtgctggttgtgtcgtcgggcattagattaatttacttataatcttaacagaacatgaagtttgtccagatagtataatgctttcacgataattccgacatgggagttgaatattggtttcaaccctatgaatgtgagatgagggaacaacgggcatggattacgcttgaaggaagaatccctttgcctacaacccatttacctcgtgccgagaaagtaatcaatggtgatttgaatttttgatgttgattctttgccttacgagatcctaagcattttatttctggtcatattcactcttttgtgtcagaatgggaatctattatagattgatacattttggaattatattgatgactttaaatcatatttttattgcattaatgatgtatccaattgtcattttggtttgctagctatacagatctttaggtgatgtgaatctcggatatcagtacatgtatattttgattttgttcaatgcactcattcttgttaaagacaaggaacatttgtaattttcatgctttatcaactttgggttgccaataaatatgaatatatattttggttttattttgagtattgggaagagggttattgagtttttgtttacatgattgaatggaataggattgaggagatgcagagttttttatgccagaactaaacatgatctgaatgctggaagatattaaacactgaggatagggtaagagcctcattggttaatataaagcggaaggtcatgtgatgtgtcggtcattctttagacatccatgcttgttatgggttgcatactccagtgggagagtagtggtaatgttgatgattgatgatatttacccacccaccacttgcccacgaattgtttattggagaaaaaaaatcccatagtaaacatgtacatgtatgcatttctaatcatggttgatgattgataattttatcttagtcctattgtctatatgctgcaaatattgatacatgtcatgggtcatgtttactatggatgcaggtgttttcatgtcctccaatattcagatttctgtctctgcagttttttatgcccagaactaaacatgatctgaatgctagagatattaaaacactgaggatga
gi|5 : tcaattcatatgatctcttcataatggatgtctgtatgtccagattggAACTTTGGGT-TTGCCAATAAATA--GAA---TAATA-TATTTTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT-GC---G-TTTTTGTTTACAT-GATTG-AATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-A-CTAAAC---TGATCTGACATGCTGCGGAAGATATTAAA-CACTGA---GGA----ATAGGGG--TAA-GAGC--CTTCA-TTGGTATT-AA-TATAAAAGCGGAAGGTCATG-TGA-TGT-GA-TCGGTCAT--TCTTCTAGACA--CC-TTGTTTG--T-TATG-GGT--AGCA-TACT-CCAGTGTGGAGAACGTAGT----GGTAATGT--GATG-ATGATGATATTATACCCACC-CACC---ATTTGC-CCTTA--TTGATGTGTTTTATGCAAGTGAAAAAAT--CCCACTCTAAAGCATGTA------TGC-TTTCTAATTT-TGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAA-TTATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGTCAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAAC--TAA-A-CATGATTCTGAAATGCCTGGAAGT-AT-TTA---AAA-CACTG-AGGATgaaaacatcccactcccggaaactcagtaccatatatattgactctctttgtactccactttcgcttcaacccctgcattctttcgttaaagtgcaagcataaaccattttctcatcattttcgcatagagcctttatcgactttggttgccaaataatagattataattttg
gi|8 : TTTGTGT-T-GCCAATAAA-A-TGAAGCATA-TGCTATTT-AGTTTTA-GTTT-TAGTATT-------ATTTTATT--TT-GA---GATTTTTGTT-ACATTGATTT--AT--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATGTA-GAGTTTTTTATGCC-CAA-A-GCAAAAACATGGTCTGA-ATGC--TGGAAGAAATTAAA-----CACTGAGG----ATAGG---GT-AAGAGCT-C---ATT-GGT--TAAATTA-AAAAGaga
gi|12 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaA-TTTT-GAGCATTGGTCAGGAGAAGGTT--GT-GGTATA-TTTCAACTTATA--GAGTG-AAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATGTG-GAGTCTTTTATACCCAAC-A-CTAGACA--TGATCTGA-CTGC--TGAAGAATATCAA-----TCACTGATG----ATAGGGCAATAtc
gi|18 : CAG-AACTAAACA--TGATCTGA-ATGC--TGGAAGGTATTtctgtgatataa
gi|6 : TTAAAAAACTCATC-AAATGAAATAGGG------AGAGC--CTC-A-TTGGT--T-AA-TATAAAAGCGGAAGGTCATG-TGA-T---GTGTCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCG
gi|14 : AGGAGC--CTC-ACT-GGT--T-A-CTATAAAAGCGGAATGTCTTG-TGA-TG---TGTCGGTCAT--TCTT-TAGAC-ATCCG-TGCTcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|7 : actaaatcatgattgtgt--C---A-T-TGT--T-AA-TATAAAAGCGGAAGGTTATGTTGATTGGTGTGTCGGTCATGGTCTT-Taacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|4 : ct-T-GGT--T-AAATA-AAAAGCGGAAGGTCATG-TGA-T---GT-GTGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|15 : cat-T-GGT--T-AA-TATAAAAGCGGAAGGTCATG-TGA-T---GTGTCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|13 : cctcat-TGATGTGTCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|12 : GGAGTCTTTTATAC------CCAACAC--T-AGA-CATGAT-CTG-ACTGCT--GAAG--A----ATATCAATCACTGAcagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|8 : attttgagcattggtcaggagaaggttgtggtatatttcaacttatagagtgaatgtaaaaggatgtaaaaggatcagttaagaaatgagtaggatgtGAGTTTTTTATG------CCCAAAGCAAA-A-A-CATGGT-CTG-AATGCTG-GAAGAAAT-T-----AAA-CACTG-AGGATtgatagggcaatatctgtgatataa
gi|18 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgatttgtgttgccaataaaatgaagcatatgctatttagttttagttttagtattattttattttgagatttttgttacattgatttataggatagtgaggtgattgaggaaatgtaCAGAAC--T-A-AACATGAT-CTG-AATGCTG-GAAG--GT-agggtaagagctcattggttaaattaaaaagtc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AGGACACCACGCCTAACGATGGATATCTTTCTCCACGCGGAAAGTTGGGTAGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTGTGCCTTAGTAACTAGCGTTGGTGTCTTGGCATTCCGAAGATGTAATCTACAATATAATCTTAAAACAGCCATGAATAGGTTTGTCTCTGCCAGTCAAGCTCGTATACTCAATCCACGTCTGAAGAGT
Unaligned ( gi|17 ): TGATTTATCGCATGAATTGTGTAAAAAATGATCCTTCCTCTGGGTGTGATTGGTGCTAGTTG
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 1111 2 3333333333 111 2222 111 222 111 11 1 2222 111 33333333333 222222 111 3333333333 111 111 11 1 2222 111 11 11 1 3333333 1 4444 222 22 1 1 33 2 4444 2 444444444 3333 1 22 2 111 333333333 11 2 444444 2 2 1 1 2 11 1 1111 1 2 11 1111111111 1 111 222222 11 1 1 6666666666666666 11 1111 1 2 77777777 11 2 3333333 1 11 111 1 222 3333333 11 1 11 22 2222 1 222 11 111 2222 111 2 111 111 1 1 11 1 1 111 1 1 1 2 2222 222 2 11 1 333 1 1 1 2 222 333333 1 2 1 2222 1 22 11 1 3333333 1 111 1 1 11 111 1 111 1111111111111111111111 1 11 222 4444444444 1 2 1 1 11 111 1 22222 11 2222 1 11 111 2 111 11 2 111 4444444444444444444444444444 11 11 33333 1111 22222 111 3333 3333 1 2222 11 1 11 22 44 1 2 1 2222 1 22222 11 11 1 1 1 11 222 2 1 1 2222 2 11 11 1 2 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 7 99 8888888888 111 6 6 5555 6 444 0 444 0 111 11 3 0 3 1111 777 8 22222222222 8 333333 1 8 8 2 3 444 3333333333 000 8 444 4 11 6 99 88 9999 99999 44 0 444 11 8 0 3 33 0 2222222 6 55 0 2222 2 222 00 3 3 0 00 3 4444 3 7 333333333 6 7 0000 7 3 22 1 3 333 222222222 88 22 3 6 22 1 555555 1 3 6 1 3 6 3 3 3 6 44 6 3 7 8888 5 0 3 88 0000000000 3 666 444444 33 2 0 0 9999999999999999 33 2222 0 1 3 7 88888888 44 6 3 7 3 7777777 0 33 777 0 000 7 5555555 2 33 0 33 3 3 33 2 3 4444 0 3 111 33 3 33 777 3 0000 7 6 7 222 3 7 7 777 666 6 7 7 3 3 6 44 7 1 1 2 7 7 999 2 3 6 3 3 7 7 4444 777 3 44 7 3 000 3 2 3 7 7 7 3 6 7 0 222 22 111111 3 7 3 7 4 6 9999 1 0 3 00 55 33 0 8888888 0 666 0 0 3 33 666 0 2 555 7 9999999999999999999999 3 88 555 333 6 5555555555 0 7 0 0 33 777 0 99999 88 1111 3 0 33 2 6 6 44 111 6 1 6 6 1 111 1 88 55 6 99 6 0 000 6666666666666666666666666666 99 7777 8 00 77777 8 8 11 88888 4444 6 6 00000 1 5 777 66 8 1 4 4 1111 4 66 4 5 5 4444 3 4444 44 3 7 6 44 00 77 4 3 3 5555 3 66666 0 6 7 77 44 44 222 2 6 7 5 7 3 6 44 555 3 3 22 7 4 7 7777 1 6 3 6 33 1 55 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . .... . ... . ... . ... .. . . . .... ... . ........... . ...... . . . . . ... .......... ... . ... . .. . .. .. .... ..... .. . ... .. . . . .. . ....... . .. . .... . ... .. . . . .. . .... . . ......... . . .... . . .. . . ... ......... .. .. . . .. . ...... . . . . . . . . . . .. . . . .... . . . .. .......... . ... ...... .. . . . ................ .. .... . . . . ........ .. . . . . ....... . .. ... . ... . ....... . .. . .. . . .. . . .... . . ... .. . .. ... . .... . . . ... . . . ... ... . . . . . . .. . . . . . . ... . . . . . . . .... ... . .. . . ... . . . . . . . . . . ... .. ...... . . . . . . .... . . . .. .. .. . ....... . ... . . . .. ... . . ... . ...................... . .. ... ... . .......... . . . . .. ... . ..... .. .... . . .. . . . .. ... . . . . . ... . .. .. . .. . . ... ............................ .. .... . .. ..... . . .. ..... .... . . ..... . . ... .. . . . . .... . .. . . . .... . .... .. . . . .. .. .. . . . .... . ..... . . . .. .. .. ... . . . . . . . .. ... . . .. . . . .... . . . . .. . .. . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 22 2222222222 777 7 7 2222 7 000 8 444 6 000 00 2 0 2 2222 555 0 22222222222 0 000000 0 0 0 8 2 000 0000000000 000 0 000 6 00 0 88 88 8888 88888 66 8 000 00 0 8 8 88 0 0000000 0 88 0 5555 5 333 00 3 3 7 00 7 3333 7 3 000000000 7 3 0000 3 3 33 0 7 000 777777777 33 00 3 7 00 0 000000 0 7 7 0 7 7 3 3 7 7 00 7 3 3 0000 0 7 7 33 0000000000 3 777 333333 88 0 0 0 8888888888888888 88 2222 0 0 7 3 77777777 00 7 7 3 2 5555555 0 88 555 0 888 0 5555555 5 22 0 88 2 2 22 5 2 5555 0 2 888 55 2 22 000 2 0000 3 7 3 333 7 3 3 000 000 7 3 3 3 3 7 77 3 0 0 3 3 3 000 3 3 7 3 3 3 3 0000 777 3 00 3 3 333 3 0 3 3 3 3 7 7 3 7 000 00 000000 3 3 7 3 0 7 0000 0 0 2 88 88 22 0 5555555 0 222 0 0 2 22 222 0 5 888 0 0000000000000000000000 3 33 777 333 7 2222222222 0 8 0 0 22 555 0 88888 55 2222 2 0 00 5 7 7 00 777 7 8 7 7 7 777 7 33 88 7 22 7 5 222 2222222222222222222222222222 00 8888 0 88 22222 0 0 00 33333 2222 7 7 44444 7 0 777 11 9 9 4 4 1111 4 11 4 0 0 7777 3 0000 77 3 3 7 33 77 00 0 7 3 0000 3 00000 7 7 3 77 33 77 777 0 7 3 3 3 3 7 00 777 7 3 00 3 0 3 7777 0 7 3 7 33 0 00 3 7 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTT-ATTTGT-TATC---GCCTTGCG-TGGCGAGGGAA-C-TTGGTGGTTCTTT--TTAGG-CTAGGTGGCT----ATA---TAT-TATTTTTTAG--ACCTGCCTTGGT-GGCGG------GGGAACCT-TGGTG-GTTCTTTTTAGGG---CCTAGGT------GG-CCTATATATTTT-T-AGA-CCTG---CCTTG--GTG-GCGGGG-AACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGG--CCTTGGTGGCG-AAGCATAGTTATT----ATTGCTCATA-TATAGTGGTTCTTGT---TGT-CTTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCG-TCAAGTGTTAGAGCTATTNAAAC--G-TCTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTATTTNGTTTAT---AT-AACAGTACATTAGTTATGT-ACCTTTGTTTTTTAAAG-CACATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTTAAAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-G-TA-GTGG-TTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GATTTAATCACGC-GGGA--TT-G--TAGG---CA-TGGGGA--TTTCTTCC-GT--TTGAGTGTGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGACA-TGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGAGGAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-TGGTGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--GCTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG--AACATC------C---A-A-TCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTC-TT-GTTA-AAGANCAAG---GAA-CATT---T-GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA---TA-TA-TATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GATT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCAC----TGAGGA-TAGGG--GTAAAGAGCCT-CA-T-GGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCG--T-TATG-GG-TTGGCAATACT-CCAGTGTGGAGA-CGTAGT-AGTGGTAATGT--GATGA-TGATGATATT-TACCCACC-CA-CCCCACTTGC-CCTT-AACGAATGTGTTTTATTGGAG-AGAAAAAATTCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGG-TGATGATGATTGATAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCAGGTGTTTTCATGTCCTC-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACTACAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTTATTTGT-TATC---GCCTTGCG-TGGCGAGGGAA-C-TTGGTGGTTCTTT--TTAGG-CTAGGTGGCT----ATA---TAT-TATTTTTTAG--ACCTGCCTTGGT-GGCGG------GGGAACCT-TGGTG-GTTCCTTTTAGGG---CCTAGGT------GGGCCTATATATTTT-T-AGA-CCTG---CCTCG--GTG-GNNGGG-AACCT--GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCAT--GG-TGGTCGCGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGNNTTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATTATCAATTGCTCATATTATAGTGGTTCTTGTCTTTGTGCTTATATACTCTGGAGTGCAAACCAAGTTGGTCCTTGGGAGACACG-AACTTGCACGTGCTTTCTCANTGACTGGCCGTTCAAGTGTTAGAGCTATTNNAACCNGTTCTGT--TTCNNTGTGAGCTGACGAAAGCGGTTCTATTTNNTTTNT---ATAAACAGTACATNAGTTATGTAACCTTNGTTTTTTAAAGACACATTTATT-GAGA-GAAATTTCGAGGTGCTTTGAGTTGA-GTTAAAATC-TCTCCCTGTTTAGATGGT--GACGTCANNNNNNNNNNGTGCACATAT-TTTGATTTGTCTC-G-TACGTGGATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-ACGGA-ATTNCTATGCCTTGCAATCCAANNTATCCAAGGGACACTGACGCCCTAGTAGATTTAATCACGCCGGGA--TT-G--TAGG---CA-TGGGGA--TTTCTTCC-GT--TNGAGTGTGA-TTAGTG-CTGG--TTGTGTGCCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCACAGATAAATTCCCGACATNGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGNGATGAGGGAANAAACGGGCATGGATCACGC-TCGAAGGAAGAATCCCT-TTGCCTACAA-CCCATTTAGCCTCGTGCCGAGAAAGTAA---CCAAAT-TGGTGAGTTTG-GATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATTATCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCNACTANNGATTGATGAACATT-TTGGAATATATATTNATGATNGACTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG--AATATC-----NTCGNATA-TCAGTA-CATGTATATT--TTNGNTTTG---TTCACAT--------GCCACT-CATTCTTT-GTTA-AAGACNAAG---GAA-CATT---TGGTAATTTTTTCATG----CTTT-ACNAACTTTGGGT-T-GCCAATAAATA-TGAA---TA-TACTATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GATTNGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAG-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA--ACTCAC----TGAGGA-TAGGG--GTAAAGAGCCT-CA-T-GGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGGTT-TATG-GG-TTAGCAATACT-CCAGTGTGGAGAACGTAGT-AGTGGTAATGTTGGATGANTGATGATATTATACCCACC-CA-CCCCACTTGC-CCTT-AACGGATGTGTTTTATNCGAG-NGAAAAAATTCCCACNNTAAAGCATGTACATGTATGCATTTCTAATTCATGG-TGATGATGATTGATAATTTTATCTTAGTCCT--ATTGTCATA-TATGCTGCAANNATTNATACATGTGCAGTGGGTCNTGTTTACTATGGAGTGCAGGTGTTTTCATGTCNTCNNAATAT-TCAGAATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT--ATTTGT-TATCCGAGCCTTGTGGTGGCGAGGGCA-C-TTGGTGGTTCTTT--TTAGC-CTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTGGGCGG------GGGCACCT-TGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCTATATATTTT-T-AGATCCTG---CCTTG--GTGCGGGGGG-AACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGT-GCATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATA-TATAGTGGTTC-TGTCTTTATCACTGTATACTCTGGAGTGCAAACCAAGTTGGTCT---GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCG-TCAAGTGTTAAAGCTATTTAAACACG--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGATTTAGTTTATATAATAAACAGTACATTAGTTATGT-ACTTTGGTTTTTTAAAG-CACATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAGGTGG-TTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GATTTAATC-CGC---GA--TTGG--TAGG---CA-TGGGGA--TTTCTTCC--T--TAGTGT-TGA--TATGG-CTGG--TTGTGT-TTGTCGGGCA-TT---AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATG--CTTTCAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAA-TGCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGAGTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAG-AAGTAAATCTCAACTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCA-TTTTATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATAGAT------ACATTGTTGGAAT-TATA-TGAC-ATTCGTTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGAT--TGAGT
gi|1 : gaAT--------GCCACT-CATTC--T-GTTATAAGAACAAG---GAC-GATT---TGGTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA---TA-TAGTATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GATTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCAC----T-AGGA-TAGGGGAGTAAAGAGC---CA-T-GGT--TAACTA-AAAAGCGGAAAGGTATG-TGA-TGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTG--GACCGTAGTCAGTGGTAATGT---GTGTATGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGTTGATGATGAAT--TAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCCCCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGATattgatgatacaatgccactcattctgttataagaacaaggacgatttggtaattttttcatgctttgatcaactttgggttgctaataaatatggatatagtattttggttttattttgagtattgggaagagggttttgagtttttgtttacatgattggaatggaatagggtggattgaggaagatggagttttttatccctcagactaaacacatgatctgaatgcgtggaagatattaaaacactcactaggataggggagtaaagagccatggttaactaaaaagcggaaaggtatgtgatgaagttcggtcattctttgaacaatccattgcttggttgtatgcggtttggcaatactaccagtgtggaccgtagtcagtggtaatgtgtgtatgatgatatttacccaccacacccccacttgcgccttaaacgaatgtgttttattggagaagaaaaatttcccatagtaaaacatgtacatgtatgcatttctaagtcatggttgatgatgaattaattttatcttagtcctgaattgtctactatgctgcaactatgatacagtcatgggtcgttttactatggatcagtgttttcatgtcctccccatatctcagatttctgtctctgcaggagttttttatgcacccccccagaactaacatgatgctgaatgctgaagatttatagaaacactgaaggatcaccggg
gi|10 : gagcttttctcgtgtatgcacgactaacagctaggtcctacaaatccgagacgttcgacctacactgggcaaggtattttaacttatttgttatccgagccttgtggtggcgagggcacttggtggttctttttagcctaggtggctataaattattattttttagacacctgcttgggtgggcgggggcaccttggtgcgttttttttaaggccccctgggttttggggggcctatatatttttagatcctgccttggtgcggggggaacctagtaggtttctttttaggcctaggtggctaatattttcagagccataaggctggtcgtgtgttcggcctaggtgggatcgttttcgcaccttggtgcatctagtcatcggcagactacgtgattcgtttgtgaactttggcgagttcttgttgctggccccttggtggcgaaagcatagttattattgctcatatatagtggttctgtctttatcactgtatactctggagtgcaaaccaagttggtctggagacacgaaacttgcacgtgcttttcattgactggccgtcaagtgttaaagctatttaaacacgctgttattcggtgtgagtgtagaaagcggttcgatttagtttatataataaacagtacattagttatgtactttggttttttaaagcacatttattggagacgaaattcgcggtgctttggttgatgttaaaatcttctgcttgtttagtggtgcgacgtcaacatttttttgtgcacatatatttgatttgtctctgttaggtggttttgaatttatgaagaaatgagggaactttttatatgaagtaggacacggaattccttgccttgcaatccaaggacactgtgcactagtgatttaatccgcgattggtaggcatggggatttcttccttagtgttgatatggctggttgtgtttgtcgggcattagattaattttaacctaatgaatctacagaacatgaagtttgttccagatagataatgctttcacgataattcgacaatggagttgaatatgcgtttctaatccctatgaatgctgagatgagggaacaagcgggctggattacgctttgaaggagtaatccctttgcctacaacccatttacctcgtgccgagaagtaaatctcaactgtgctgatttgaaatttgtgattattgattacgtttgccgtttacgagatcgctagcattttatttctggtctattcactcttttgtgtcagaatgggaatctttatagatacattgttggaattatatgacattcgttttaaatcatctttattgcattcaatgatgttagtctaatttcattttggctttgctagctatacacgatacctttaaggtgattgagtattgatgatacaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGA--GTGG-----GGAAAACATCCCACTCCCGGAAACTCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCATCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT---TA-TA--ATTTTGcaccggg
gi|11 : CACGC-GGAAAGTT-GGGTAGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTGTGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGT
gi|12 : aggacaccacgcctaacgatggatatctttctcA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GAGT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATCAA-----TCAC----TGATGA-TAGGG--ctctgccagtcaagctcgtatactcaatccacgtctgaagagt
gi|13 : -TGA-TG---TG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC-----TTTGT-TATC---ACGTTGC--TGGCGAGGGAACC-TTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACT-GGT--TAC-TATAAAAGCGGAATGTCTTG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CA-TTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AAC-TTTATTTGT-TAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-G-TA----GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-G-TACGTGG-TTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GATTTA-TCACGC--GGA--TT-G--TAGG---CA-TGGGGA--TT-CTTCC--T--TTGAGTGTGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT--TTCAC-GATAA--TTCCGACATGGGAG--TTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAGAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA---TGGTGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA----CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG------------------ATA-TCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------G-CACT-CATTC-TT-GTTA-AAGAC-AAG---GAA-CATT---T-GTAA--TTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA---TA-TA-TATTTTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GATT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATG-CAGAGTTTTTTATGCC-AGA-ACTAA--ACATGATCTGA-ATGC-TG--GAAGATATTAAA-----CAC----TGAGGA-TA-GG--GT-AAGAGCCT-CATT-GGT--TAA-TAT-AAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTTG--T-TATG-GG-TT-GC-ATACT-CCAGTG-GGAG-----AGT-AGTGGTAATGTT-GATGATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAG-AAAAAAAA-TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGG-T--TGATGATTGATAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCTC-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGATTTAATCACGCCGG-A--TT-G--TAGG---CA-TGGGG----TTCTTCC-GT--T-GAGTGTGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGC-ATTAATGA-GAATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAAT-TGGTGAGTTTG-GATTTT-GA-TGTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCTA-TCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACATT-T-GGAATATATATT-ATGATGAACTTTCAAT-CATAT---TTAT-GCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGATAGTGAATCTCGG--AATATC-----AT-----------TA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTC-TT-GTTA-AAGACGAAG---GAA-CATT---T-GTAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA---TA-TATTA-TTTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTTGAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-T-GGT--TAAATA-AAAAGCGGAAGGTCATG-TGA-TG---TG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTCG
gi|4 : catGCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTT-ATTTGT-TATG---CCCTTG-G-TGGCGAGGGAA-C-TTGGTGGTTCTTT--T-AGG-CTAGGTGGCT----ATA---TAT-T----TTTAG--ACCTGCCTTGGT-GGCGG------GGGAACCT-TGGTG-GTTCTTTTTAGG----CCTAGGT------GG--CTATATATTTT-TTAGA-CCTG---CCTTG--GTG-GCGGGG-AACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGCA-TTAGTCAT--GCAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGG--CCTTGGTGGCG-AAGCATAGTTATT----ATTGCTCATA-TATAGTGGTTCTTGT-------CTTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGCTT--TCATTGACTGGCCG-TCAAGTGTTAGAGCT-TTAA-------TCTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTT---AT-AACAGTACATTAGTTATGT-ACCTTTGTTTTTTAAAG-CACATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTTAAA----TCTCTCTGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA---TAATA-TATTTTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GATT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CAC----TGAGGAATAGGG--GTAA-GAGCCTTCA-TTGGTATTAA-TATAAAAGCGGAAGGTCATG-TGA-TG---TGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTTG--T-TATG-GG-T-AGCA-TACT-CCAGTGTGGAGAACGTAGT----GGTAATGT--GATGA-TGATGATATTATACCCACC-CA-CC--ATTTGC-CCTT-A-TTGATGTGTTTTATGCAAG-TGAAAAAAT-CCCACTCTAAAGCATGTA------TGC-TTTCTAATTT-TGA-TGATGATGAT-GATAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCAG-TGTTTTCATATCGTCAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : AAA--ACTCATCAAATGAA-A-TAGGG------AGAGCCT-CA-TTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTCGaga
gi|6 : ttaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTT-ATTTGT-TATC---GCCTTG-G-TGGCGAGGGAA-CCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TAT-T----TTTAG--ACCTGCCTTGGT-GGCGG------GGGAACCT-TGGTG-TTTCTTGTTA-GG---CCTAGGT------GG--CTATACATTTT-C-AGA-CCTA---GATGGTCGTGTGTTGGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGT-GGCGA------GGGAACCT-TGGTG-GTTCTTTTTAGGG---C-TAGGT------GG--CTATATATTTT-T-AGA-CCTG---CCTTG--GTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGG-CTTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGG--CCTTGGTGGCG-AAGCATAGTTATTATCAATTGCTCcgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CA-T-TGT--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGTGTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCTCAAA--CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATCTC---GCTT--CA-TTATGAGA----------TAGTTCTTTACCTAAG-TT-GGTGTCTGAGCATA---TATGTGCT--------ACCTGTGTTGAT-GACATTTATTCGCGTATCTGCAGTG-GGAACCTTTGGTG---CCTATGT------GGCCTTATATATTTTCT-AGA-CCTGTCCTCTCG--GTG-G-CGGG-AACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCATA-TGCTATTT-AGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGATTT--AT--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CAC----TGAGGA-TA-GG--GT-AAGAG-CT-CATT-GGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCTT-----TGTGCTTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTAACCGGTTCTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTATTTGTTTTAT------AACAGTACATAAGTTATGTAA-CTTTGTTTTTTAAAGACA-ATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TGATTTATCGCATGAATTGTGTAAAAAATGATCCTTCCTCTGGGTGTGATTGGTGCTAGTTG
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 1111 11 3333333333 111 1111 222 1 11 1 2222 111 11111111 11 555555555555555555 111 2222222 1 111 22222 111 222 111 11 11 1 2222222 1 3333 1 1 1 11 1 2222 1 666666666666 2222 1 22 1 1111111 4444444 11 1 1 1 2222 1 1 1 1 11 1 2 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 111111 111111 111 2222 3333333 11 1 2222 1 222 11 111 2222 11 111 22 11 1 1 11 1 1 1 1 1 1 222 2222222 1 1 1 333 1 1 1 1 11 11 1 1 444444 1 111 11 1 3333333 1 111 1 1 11 111 1 111 0000000000000000000000 1 11 222 33333333 1 111 1 1 111 1 222222 11 2222 1 11 111 11 111 5555555555555555555555555555 222 11 33333 2222222 1 3333 2222 11 1 5555555 1 1 1 1 1 1 2222 1 111 1 11 11 1 1 1 222 1 1 1 1 1 2 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 6 55 8888888888 111 6 6 3 7777 8 444 0 6 11 3 0 3 1111 777 88888888 5 11 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 000 8 00000 444 9999 444 99999 44 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 7 7 3 6 3 3 88 3 8888 3 333333333333 6 7 1111 7 3 00 3 7777777 5555555 88 3 6 4 6 8888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 888888 8 666666 444 8 0000 6 7777777 8 88 8 11 0 3 5 2 3 4444 0 3 111 33 3 33 777 3 0000 7 2 66 3 2 55 22 9 3 111 55 55 7 3 3 6 44 7 2 7 7 3 5 3 6 3 3 7 7 333 3333333 3 3 7 3 000 3 2 3 7 7 7 3 6 7 0 44 6 88 7 3 3 7 6 77 222222 1 0 3 777 3 2 33 0 4444444 0 666 0 0 3 33 666 0 2 555 7 1111111111111111111111 6 3 88 888 333 6 66666666 55 0 777 0 0 777 0 555555 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 4444444444444444444444444444 9 7777 8 8 111 8 8 11 0 77777 6 5555555 5 8 7 66 8 1 4 4 1111 4 66 4 5 5 5 8888 7 6 44 3 7 4444444 3 3 7 3 3 3 3 5555 3 999 7 6 7 3 44 88 7 3 3 6 6 6 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . . .... . ... . . .. . . . .... ... ........ . .. .................. . . . . . . ... ....... . . ... . ..... ... .... ... ..... .. . ... .. . . . .. . ....... .. . .... . . . . . . . . .. . .... . ............ . . .... . . .. . ....... ....... .. . . . . .... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . ...... . ...... ... . .... . ....... . .. . .. . . . . . .... . . ... .. . .. ... . .... . . .. . . .. .. . . ... .. .. . . . . .. . . . . . . . . . . . . ... ....... . . . . ... . . . . . . . . . . .. . .. . . . . . .. ...... . . . ... . . .. . ....... . ... . . . .. ... . . ... . ...................... . . .. ... ... . ........ .. . ... . . ... . ...... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................ . .... . . ... . . .. . ..... . ....... . . . .. . . . . .... . .. . . . . .... . . .. . . ....... . . . . . . . .... . ... . . . . .. .. . . . . . . ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 88 2222222222 777 7 7 2 2222 0 444 6 0 00 2 0 2 2222 555 88888888 0 00 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 000 0 00000 000 2222 222 88888 66 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 3 3 3 7 3 3 33 3 3333 3 000000000000 7 3 7777 3 3 77 3 3333333 0000000 33 3 7 0 0 3333 7 3 3 3 3 7 00 7 3 7 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 444444 0 000000 000 0 2222 8 8888888 0 88 0 00 8 2 0 5 2 5555 0 2 888 55 2 22 000 2 0000 0 5 55 2 5 55 55 2 2 555 55 88 3 3 3 7 77 3 0 3 3 3 0 3 7 3 3 3 3 333 3333333 3 3 3 3 333 3 0 3 3 3 3 3 7 3 7 77 7 33 3 3 3 3 7 33 333333 0 0 2 888 2 5 22 0 2222222 0 222 0 0 2 22 222 0 5 888 0 7777777777777777777777 7 3 33 333 333 7 22222222 00 0 000 0 8 555 0 222222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 5555555555555555555555555555 8 8888 0 0 222 0 0 00 8 44444 7 4444444 0 9 8 11 9 9 4 4 1111 4 11 4 0 0 7 3333 3 7 77 3 3 7777777 3 3 3 3 3 3 3 0000 3 777 3 7 3 3 77 77 3 3 3 7 0 7 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTTGT---TGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGCTATTT-AA-CG--T-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTATTT-GTTT-TAT----AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGGGA--TT-G--T---AGG---CA-TGGGGA--TTCCTTCC--T--TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGAG-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG--AACATC-----------A--TCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CA-TTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGCAATACT-CCAGTGTGGAG-AC---GT-AGTGGTAATGT-GATG-AT-GATGATATT-TACCCACC-CA-CCCCACTTGC-CCTT-AACGAATGTGTTTTATTGGAG-AGAAAAAATTCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGG-TGATGATGA-TGATAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAA-CTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTTGT---TGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGCTATTN-AAACG--T-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTATTTNGTTTATAT----AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTTAAAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGGGA--TT-G--T---AGG---CA-TGGGGA--TTTCTTCC-GT--TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGAGGAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG--AACATCC---------AA--TCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CA-T-GGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGCAATACT-CCAGTGTGGAG-ACGTAGT-AGTGGTAATGT-GATG-AT-GATGATATT-TACCCACC-CA-CCCCACTTGC-CCTT-AACGAATGTGTTTTATTGGAG-AGAAAAAATTCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGG-TGATGATGATTGATAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCA-CTTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCT-----GCCTT---GGTGCGG-GGGGAACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT-GTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGTC-T--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATTT-AAACA--CGCTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGATTTAGTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGC--GA--TTGG--T---AGG---CA-TGGGGA--TTTCTTCC--T--T--AGTGTTGA--TATGG-CTGG--TTGTGT-TTGTCGGGCA-TT---AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATG--CTTTCAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAA-TGCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGAGTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAG-AAGTAAATCTCAA-CTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCA-TTTTATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATA----GAT--ACATTGTTGGAAT-TATA-TGAC-ATTCG--TTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGAT--TGAGT
gi|1 : gaAT--------GCCACT-CATTCT---GTTATAAGAACAAG---GAC-GATTT----GGTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-T-GGT--TAACTA-AAAAGCGGAAAGGTATG-TGA-TGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATGT-G-TGTAT-GATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGTTGATGATGAAT--TAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGATattgatgatacaatgccactcattctgttataagaacaaggacgatttggtaattttttcatgctttgatcaactttgggttgctaataaatatggatatagtattttggttttattttgagtattgggaagagggttttgagtttttgtttacatgattggaatggaatagggtggattgaggaagatggagttttttatccctcagactaaacacatgatctgaatgcgtggaagatattaaaacactcactaggataggggagtaaagagccatggttaactaaaaagcggaaaggtatgtgatgaagttcggtcattctttgaacaatccattgcttggttgtatgcggtttggcaatactaccagtgtggaccgtagtcagtggtaatgtgtgtatgatgatatttacccaccacacccccacttgcgccttaaacgaatgtgttttattggagaagaaaaatttcccatagtaaaacatgtacatgtatgcatttctaagtcatggttgatgatgaattaattttatcttagtcctgaattgtctactatgctgcaactatgatacagtcatgggtcgttttactatggatcagtgttttcatgtcctccccatatctcagatttctgtctctgcaggagttttttatgcacccccccagaactaacatgatgctgaatgctgaagatttatagaaacactgaaggatcaccggg
gi|10 : gagcttttctcgtgtatgcacgactaacagctaggtcctacaaatccgagacgttcgacctacactgggcaaggtattttaacttatttgttatccgagccttgtggtggcgagggcacttggtggttctttttagcctaggtggctataaattattattttttagacacctgcttgggtgggcgggggcaccttggtgcgttttttttaaggccccctgggttttggggggcctatatatttttagatcctgccttggtgcggggggaacctagtaggtttctttttaggcctaggtggctaatattttcagagccataaggctggtcgtgtgttcggcctaggtgggatcgttttcgcaccttggtgcatctagtcatcggcagactacgtgattcgtttgtgaactttggcgagttcttgttgctggccccttggtggcgaaagcatagttattattgctcatatatagtggttctgtctttatcactgtatactctggagtgcaaaccaagttggtctggagacacgaaacttgcacgtgcttttcattgactggccgtcaagtgttaaagctatttaaacacgctgttattcggtgtgagtgtagaaagcggttcgatttagtttatataataaacagtacattagttatgtactttggttttttaaagcacatttattggagacgaaattcgcggtgctttggttgatgttaaaatcttctgcttgtttagtggtgcgacgtcaacatttttttgtgcacatatatttgatttgtctctgttaggtggttttgaatttatgaagaaatgagggaactttttatatgaagtaggacacggaattccttgccttgcaatccaaggacactgtgcactagtgatttaatccgcgattggtaggcatggggatttcttccttagtgttgatatggctggttgtgtttgtcgggcattagattaattttaacctaatgaatctacagaacatgaagtttgttccagatagataatgctttcacgataattcgacaatggagttgaatatgcgtttctaatccctatgaatgctgagatgagggaacaagcgggctggattacgctttgaaggagtaatccctttgcctacaacccatttacctcgtgccgagaagtaaatctcaactgtgctgatttgaaatttgtgattattgattacgtttgccgtttacgagatcgctagcattttatttctggtctattcactcttttgtgtcagaatgggaatctttatagatacattgttggaattatatgacattcgttttaaatcatctttattgcattcaatgatgttagtctaatttcattttggctttgctagctatacacgatacctttaaggtgattgagtattgatgatacaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGA--GTGG-----GGAAAACATCCCACTCCCGGAAACTCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCA-TCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGCGGAAAGTT-GGGT---AGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTG-TGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATC-AA----TCACTGATGA-TAGGG--
gi|13 : -TGA-TG---TG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATC---AC-GTTGC--TGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACT-GGT--TAC-TATAAAAGCGGAATGTCTTG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CA-TTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCATGA-A--TT-G--TGTAAAA---AA-TGA------TCCTTCC--T--CTGGGTG-TGA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGCGG-A--TT-G--T---AGG---CA-TGGGGA--TT-CTTCC--T--TTGAGTG-TGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT--TTCAC-GATAA--TTCCGAC-ATGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAGAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-G-G-TGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGAT-GTGAATCTCGG--A---T------------A--TCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----G-TAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-----------AT-----------TGAGGA-GATG-CAGAGTTTTTTATGCC-AGA-ACTAAACA--TGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TAGGG---TAA-GAGCCT-CA-TTGGT--TAA-TATAAA-GCGGAAGGTCATG-TGA-TG---TG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTTG-CA-TACT-CCAGTG-GGAG-A----GT-AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA-CC--ACTTGC-CC----ACGAAT-TGTTT-ATTGGAG-AAAAAAAAT-CCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGG-T--TGATGATTGATAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA--TT-G--T---AGG---CA-TGGGG----TTCTTCC-GT--T-GAGTG-TGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGC-ATTAATGAG-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTG-GATTTT-GA-TGTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCT-ATCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACA-T-TTGGAATATATATT-ATGAT--GAACTTTCAAT-CATA---TTTA-TGCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGATAGTGAATCTCGG--AATATC-----------A--T---TA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----G-TAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-T-GGT--TAAATA-AAAAGCGGAAGGTCATG-TGA-TG---TG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : catGCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATG---CC-CTTG-G-TGGCGAGGGAA-CTTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA---TAT-T----TTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GGC-T-ATATATTTT-TTAGA-CCT-----GCCTT---GGTG-GC-GGGGAACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGCATT-AGTCAT-G-CAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTTGT-------C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGCTTT--CATTGACTGGCCGT-CAAGTGTTAGAGCT--TT-AA-----T-CTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTAT----AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTT-AAATC-TCT-C-TGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GTAA-GAGCCTTCA-TTGGTATTAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAAC---GT-AGTGGTAATGT-GATG-AT-GATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAG-TGAAAAAA-TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGA-TGATGATGA-TGATAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : A-TAGGG------AGAGCCT-CA-TTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcatcaaatgaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTG-G-TGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TA-----TTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACATTTT-C-AGA-CCTAGATGGTCGT----GTG-TT-GGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CA-T-TGT--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGTGTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATC---TCGCTT-CA-TTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA---TATGTGCT------AC--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATATTTTCT-AGA-CCT-----GTCCTCTCGGTG-GC--GGGAACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATT-GGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCTT-----TGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTAACCGGTT-CTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTATTT-GTTT-TAT----AACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc
Alignments
lowQualScore : 1111 11 3333333333 111 1111 222 1 11 1 2222 111 11111111 11 555555555555555555 111 2222222 1 111 22222 111 222 111 11 11 1 2222222 1 3333 1 1 1 11 1 2222 1 6666666 111 11 1 1 1 22 1 5555555555 11 1 1 1 333333 1 1 1 1 11 1 1 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 111111 111111 111 2222 1111 11 1 2222 1 222 11 111 2222 11 111 22 11 1 1 11 1 1 111 1 1 1 222 2222222 1 1 1 333 1 1 1 1 11 11 1 1 444444 1 111 11 1 3333333 1 111 1 1 11 111 1 1111 44444444444 44444 1 11 222 33333333 1 111 1 1 111 1 222222 11 2222 1 11 111 11 111 4444444444444444444444444444 11 33333 22222 333 2222 1 2 1 3333333333 1 111 1 1 444 1 111 1 2 11 1 33 1 11 222 1 1 1 1 1 1 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 6 55 8888888888 111 6 6 3 7777 8 444 0 5 11 3 0 3 1111 777 88888888 5 11 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 000 8 00000 444 9999 444 99999 44 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 7 7 3 6 3 3 88 3 8888 3 0000000 666 6 7 6 88 7 3 7 3 3 22 3 8888888888 88 3 6 3 3 888888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 888888 8 666666 444 8 0000 7777 0 8 88 8 11 0 3 5 2 3 4444 0 3 111 33 3 33 777 3 0000 7 2 66 3 2 55 22 9 3 111 55 55 7 3 3 6 44 7 2 7 7 3 666 3 6 3 3 7 7 333 3333333 3 3 7 3 000 3 2 3 7 7 7 3 6 7 0 44 6 88 7 3 3 7 6 77 222222 1 0 3 777 3 2 33 0 4444444 0 666 0 0 3 33 666 0 2 3333 77777777777 22222 6 3 88 888 333 6 66666666 55 0 777 0 0 777 0 555555 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 6666666666666666666666666666 99 7777 8 8 77777 8 8 11 0 77777 6 6 00000 1 4 66 8 1 4 4 555 4 66 4 5 5 5 8888 7 2 3 3 7 5555555555 3 7 777 3 3 333 3 999 7 6 7 3 3 88 7 3 00 3 88 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . . .... . ... . . .. . . . .... ... ........ . .. .................. . . . . . . ... ....... . . ... . ..... ... .... ... ..... .. . ... .. . . . .. . ....... .. . .... . . . . . . . . .. . .... . ....... ... . . . .. . . . . . .. . .......... .. . . . . ...... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . ...... . ...... ... . .... .... . . .. . .. . . . . . .... . . ... .. . .. ... . .... . . .. . . .. .. . . ... .. .. . . . . .. . . . . . ... . . . . . . ... ....... . . . . ... . . . . . . . . . . .. . .. . . . . . .. ...... . . . ... . . .. . ....... . ... . . . .. ... . . .... ........... ..... . . .. ... ... . ........ .. . ... . . ... . ...... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................ .. .... . . ..... . . .. . ..... . . ..... . . .. . . . . ... . .. . . . . .... . . . . . .......... . . ... . . ... . ... . . . . . .. . . .. . .. ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 88 2222222222 777 7 7 2 2222 0 444 6 0 00 2 0 2 2222 555 88888888 0 00 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 000 0 00000 000 2222 222 88888 66 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 3 3 3 7 3 3 33 3 3333 3 0000000 777 7 3 7 33 3 3 3 3 3 00 3 3333333333 33 3 7 3 3 333333 7 3 3 3 3 7 00 7 3 3 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 444444 0 000000 000 0 2222 0000 8 0 88 0 00 8 2 0 5 2 5555 0 2 888 55 2 22 000 2 0000 0 5 55 2 5 55 55 2 2 555 55 88 3 3 3 7 77 3 0 3 3 3 777 3 7 3 3 3 3 333 3333333 3 3 3 3 333 3 0 3 3 3 3 3 7 3 7 77 7 33 3 3 3 3 7 33 333333 0 0 2 888 2 5 22 0 2222222 0 222 0 0 2 22 222 0 5 5555 55555555555 77777 7 3 33 333 333 7 22222222 00 0 000 0 8 555 0 222222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 2222222222222222222222222222 00 8888 0 0 22222 0 0 00 8 44444 7 7 44444 7 4 11 9 9 4 4 666 4 11 4 0 0 7 3333 3 0 7 3 3 0000000000 3 3 777 3 3 333 3 777 3 7 3 3 7 77 3 3 33 3 33 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT--T---TGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGGGA--TT-G--T---AGG---CA-TGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAA-ACCATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAG-AGAAAAAA-TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTTGT---TGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGCTATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGGGA--TT-G--T---AGG---CA-TGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAACATCATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-TG--GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGCAATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA-CCCCACTTGC-CCTT-AACGAATGTGTTTTATTGGAG-AGAAAAAATTCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGTGATGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCAC-TTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCT-----GCCTT---GGTGCGG-GGGGAACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT-GTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGT-CT--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATT-TAAACAC--G--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGA-TTTA-GTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGC--GA--TTGG--T---AGG---CA-TGGGGA--TTTCTTCCT----T--AGTGTTGA--TATGG-CTGG--TTGTGT-TTGTCGGGCA-TT---AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATG--CTTTCAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAA-TGCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGA-GTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAG-AAGTAAATCTCAA-CTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCA-TTTTATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATA----GAT--ACATTGTTGGAAT-TATA-TGAC-ATTCG--TTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGA-T--TGAG-----------T
gi|1 : gaAT--------GCCACT-CATTCT---GTTATAAGAACAAG---GAC-GATTT----GGTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-TGGT--TAACTA-AAAAGCGGAAAGGTATG-TGA-TGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATG-TG-TGTA-TGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGATattgatgatacaatgccactcattctgttataagaacaaggacgatttggtaattttttcatgctttgatcaactttgggttgctaataaatatggatatagtattttggttttattttgagtattgggaagagggttttgagtttttgtttacatgattggaatggaatagggtggattgaggaagatggagttttttatccctcagactaaacacatgatctgaatgcgtggaagatattaaaacactcactaggataggggagtaaagagccatggttaactaaaaagcggaaaggtatgtgatgaagttcggtcattctttgaacaatccattgcttggttgtatgcggtttggcaatactaccagtgtggaccgtagtcagtggtaatgtgtgtatgatgatatttacccaccacacccccacttgcgccttaaacgaatgtgttttattggagaagaaaaatttcccatagtaaaacatgtacatgtatgcatttctaagtcatggttgatgatgaattaattttatcttagtcctgaattgtctactatgctgcaactatgatacagtcatgggtcgttttactatggatcagtgttttcatgtcctccccatatctcagatttctgtctctgcaggagttttttatgcacccccccagaactaacatgatgctgaatgctgaagatttatagaaacactgaaggatcaccggg
gi|10 : gagcttttctcgtgtatgcacgactaacagctaggtcctacaaatccgagacgttcgacctacactgggcaaggtattttaacttatttgttatccgagccttgtggtggcgagggcacttggtggttctttttagcctaggtggctataaattattattttttagacacctgcttgggtgggcgggggcaccttggtgcgttttttttaaggccccctgggttttggggggcctatatatttttagatcctgccttggtgcggggggaacctagtaggtttctttttaggcctaggtggctaatattttcagagccataaggctggtcgtgtgttcggcctaggtgggatcgttttcgcaccttggtgcatctagtcatcggcagactacgtgattcgtttgtgaactttggcgagttcttgttgctggccccttggtggcgaaagcatagttattattgctcatatatagtggttctgtctttatcactgtatactctggagtgcaaaccaagttggtctggagacacgaaacttgcacgtgcttttcattgactggccgtcaagtgttaaagctatttaaacacgctgttattcggtgtgagtgtagaaagcggttcgatttagtttatataataaacagtacattagttatgtactttggttttttaaagcacatttattggagacgaaattcgcggtgctttggttgatgttaaaatcttctgcttgtttagtggtgcgacgtcaacatttttttgtgcacatatatttgatttgtctctgttaggtggttttgaatttatgaagaaatgagggaactttttatatgaagtaggacacggaattccttgccttgcaatccaaggacactgtgcactagtgatttaatccgcgattggtaggcatggggatttcttccttagtgttgatatggctggttgtgtttgtcgggcattagattaattttaacctaatgaatctacagaacatgaagtttgttccagatagataatgctttcacgataattcgacaatggagttgaatatgcgtttctaatccctatgaatgctgagatgagggaacaagcgggctggattacgctttgaaggagtaatccctttgcctacaacccatttacctcgtgccgagaagtaaatctcaactgtgctgatttgaaatttgtgattattgattacgtttgccgtttacgagatcgctagcattttatttctggtctattcactcttttgtgtcagaatgggaatctttatagatacattgttggaattatatgacattcgttttaaatcatctttattgcattcaatgatgttagtctaatttcattttggctttgctagctatacacgatacctttaaggtgattgagtattgatgatacaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGAGT-GGGGAAAACATCCCACTCCCGGAA-AC--TCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCA-TCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGCGGAAAGTT-GGGT---AGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTG-TGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATC-AA----TCACTGATGA-TAGGG--
gi|13 : -TGA-TG---TG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATC---AC-GTTGC--TGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACTGGT--TAC-TATAAAAGCGGAATGTCTTG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCATGA-A--TT-G--TGTAAAA---AA-TGA------TCCTTCCT----CTGGGTG-TGA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGCGG-A--TT-G--T---AGG---CA-TGGGGA--TTC-TTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT--TTCAC-GATAA--TTCCGAC-ATGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAG-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-G-G-TGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGA----TATCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----G-TAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATG-CAGAGTTTTTTATGCC-AGA-ACTAA--ACATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TA-GG--GT-AAGAGCCT-CATTGGT--TAA-TAT-AAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTT-GC-ATACT-CCAGTG-GGAG-A-GT----AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAG-AAAAAAAA-TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA--TT-G--T---AGG---CA-TGGGG----TTCTTCCG----TTGAGTG-TGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGC-ATTAATGA-G-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTG-GATTTT-GA-TGTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCT-ATCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACA-T-TTGGAATATATATT-ATGAT--GAACTTTCAAT-CATA---TTTA-TGCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGA-TAGTGAA-----------TCTCGGAATATCAT---TA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----G-TAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-CATTGGT--TAAATA-AAAAGCGGAAGGTCATG-TGA-T---GTG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : GCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATG---CC-CTTG-G-TGGCGAGGGAAC-TTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA---TAT-T----TTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GGC-T-ATATATTTT-TTAGA-CCT-----GCCTT---GGTG-GC-GGGGAACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGCATT-AGTCAT-G-CAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTC---T---TGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGC-TT-TCATTGACTGGCCGT-CAAGTGTTAGAGC--TT-TA---A----T-CTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTT-AAATC-TCT-C-TGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GTAA-GAGCCTTCATTGGTATTAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAACGT----AGTGGTAATG-TGATG-A-TGATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAG-TGAAAAAA-TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : A-TAGGG------AGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-TGA-T---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcatcaaatgaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTG-G-TGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TA-----TTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACATTTT-C-AGA-CCTAGATGGTCGT----GTG-TT-GGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CATTG-T--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGTGTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATC---TCGCTT-CA-TTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA---TATGTGCT------AC--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATATTTTCT-AGA-CCT-----GTCCTCTCGGTG-GC--GGGAACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATTGGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCTT-----TGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTA---ACCGGTTCTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTA-TTTG-TTTTAT------AACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc
Alignments
lowQualScore : 1111 11 3333333333 111 1111 222 1 11 1 2222 111 11111111 11 555555555555555555 111 2222222 1 111 22222 111 222 111 11 11 1 2222222 1 3333 1 1 1 11 1 2222 1 33333 111 2222 1 1 1 222 1 666666666 11 1 1 1 333333 1 1 1 1 11 1 1 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 22222 222222 111 2222 1111 11 1 3333 1 222 11 111 2222 22 11 111111 22 1 1 2 1 1 111 1 1 1 2 222 2222222 1 1 1 333 1 1 1 2 1 11 222222 1 1 444444444444 1 2222 11 1 3333333 1 111 1 1 11 111 111 777777777777777777777777 1111 5555555555555555555555555555555 1 111 1 1 111 1 222222 11 2222 1 11 111 11 111 4444444444444444444444444444 11 33333 22222 11111 2222 1 1 1 3333333333 1 111 1 1 222 1 111 11 11 1 11 1 11 222 1 1 1 1 1 1 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 6 55 8888888888 111 6 6 3 7777 8 444 0 5 11 3 0 3 1111 777 88888888 5 11 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 000 8 00000 444 9999 444 99999 44 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 7 7 3 6 3 3 88 3 8888 3 55555 666 6 7 1111 7 3 7 3 3 777 3 777777777 88 3 6 3 3 888888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 33333 444444 444 8 0000 7777 0 8 8 0 8 11 0 3 5 2 6666 0 3 111 33 3 33 777 3 0000 7 2 66 3 44 22 888888 55 3 3 7 3 3 6 3 7 2 7 7 3 666 3 6 3 3 3 333 3333333 3 3 7 3 000 3 2 3 7 3 3 6 7 0 44 777777 7 3 3 555555555555 1 0 7777 3 2 33 0 4444444 0 666 0 0 3 33 666 6 3 777 555555555555555555555555 7777 3 2222222222222222222222222222222 55 0 777 0 0 777 0 555555 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 6666666666666666666666666666 99 7777 8 8 77777 8 8 11 0 77777 6 6 00000 1 4 66 8 1 11111 777 4 66 4 5 5 5 8888 7 2 3 3 7 5555555555 3 7 777 3 3 333 3 999 7 6 7 0 88 88 7 3 88 3 88 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . . .... . ... . . .. . . . .... ... ........ . .. .................. . . . . . . ... ....... . . ... . ..... ... .... ... ..... .. . ... .. . . . .. . ....... .. . .... . . . . . . . . .. . .... . ..... ... . . .... . . . . . ... . ......... .. . . . . ...... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . ..... ...... ... . .... .... . . . . . .. . . . . .... . . ... .. . .. ... . .... . . .. . .. .. ...... .. . . . . . . . . . . . . ... . . . . . ... ....... . . . . ... . . . . . . . . . .. ...... . . . ............ . . .... . . .. . ....... . ... . . . .. ... . . ... ........................ .... . ............................... .. . ... . . ... . ...... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................ .. .... . . ..... . . .. . ..... . . ..... . . .. . . ..... ... . .. . . . . .... . . . . . .......... . . ... . . ... . ... . . . . .. .. . . .. . .. ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 88 2222222222 777 7 7 2 2222 0 444 6 0 00 2 0 2 2222 555 88888888 0 00 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 000 0 00000 000 2222 222 88888 66 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 3 3 3 7 3 3 33 3 3333 3 77777 777 7 3 3333 3 3 3 3 3 333 3 333333333 33 3 7 3 3 333333 7 3 3 3 3 7 00 7 3 3 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 44444 000000 000 0 2222 0000 8 0 0 8 0 00 8 2 0 5 8888 0 2 888 55 2 22 000 2 0000 0 5 55 2 00 55 888888 55 2 2 3 3 3 7 7 3 0 3 3 3 777 3 7 3 3 7 333 3333333 3 3 3 3 333 3 0 3 3 7 3 7 3 7 77 333333 3 3 3 777777777777 0 0 0000 2 5 22 0 2222222 0 222 0 0 2 22 222 5 2 000 222222222222222222222222 8888 2 5555555555555555555555555555555 00 0 000 0 8 555 0 222222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 2222222222222222222222222222 00 8888 0 0 22222 0 0 00 8 44444 7 7 44444 7 4 11 9 9 11111 888 4 11 4 0 0 7 3333 3 0 3 3 3 0000000000 3 3 777 3 3 333 3 777 3 7 3 7 33 77 3 3 33 3 33 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACGAA-CTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TAA---C--GT-CTGTT--TCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTATA------ACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATTG-AGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTTAAA-TCT-CT-CTTGTTTAG-TGGTG--ACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTATCA-GAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGG-A--TTGG-T---AGG---CA-TGGGGA--TTCCTTCCT----TTGAGTGT-GA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTC-TTCAC-GATAAATTCCCGACA-TGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGCTT-GAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTGAA-TTTTTGAT-GTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTTAGGTGA-T-GTGAA-----------TCTCGGAA--TATCAGTA-C--ATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACGAA-CTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TAA---C--GT-CTGTT--TCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTATA------ACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATTG-AGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTTAAA-TCT-CT-CTTGTTTAG-TGGTG--ACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTATCA-GAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGCGGGA--TTG--T---AGG---CA-TGGGGA--TTCCTTCCT----TTGAGTGT-GA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTT---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTTTCAC-GATAAATTCCCGACA-TGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAATTGTTGAGATGAGGGAACAAGCGGGCATGGATTACGCTT-GAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-TTG-G-TGA-TTTGAA-TTTTTGAT-GTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTTAGGTGA-T-GTGAA-----------TCTCGGAAACCATCAGTA-C--ATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----G-TAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAGAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCAC-TTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCT-----GCCTT---GGTGCGG-GGGGAACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTGTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGTC-T--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATT-TAAACAC--G--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGA-TTTA-GTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGCG--A--TTGG-T---AGG---CA-TGGGGA--TTTCTTCCT----T--AGTGTTGA-T-ATGG-CTGG--TTGTGT-TTGTCGGGCATT----AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATGCT--TTCAC-GATAA-TTC--GACAATGGAG--TTGAATATGCGTTTCTAATCCCTATGAAT-GCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGA-GTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAAATCTCAA-CTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCTA-GCATTTT-ATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATAGAT------ACATTGTTGGAAT-TATAT-GAC-ATTCG--TTTTAAAT-CAT--C-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAG------GTGA--------------TTG---------AGTA-TTGATG-ATA------------------CA-AT--------GCCACT-CATTCT---GTTATAAGAACAAG---GAC-GATTT----GGTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-TGGT--TAACTA-AAAAGCGGAAAGGTATG-----TGATGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATG-TG-TGTA-TGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGAT
gi|10 : gaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTTA-GTGAGT-GGGGAAAACATCCCACTCCCGGAAAC--TCAGTACC--ATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCA-TCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGCGGAAAGTTGGGT---AGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTGT-GCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATC-AA----TCACTGATGA-TAGGG--
gi|13 : -----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATC---AC-GTTGC--TGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACTGGT--TAC-TATAAAAGCGGAATGTCTTG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCATCA-GAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCATGA-A--TTG--TGTAAAA---AA-TGA------TCCTTCCT----CTGGGTGT-GA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTATCA-GAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGCGG-A--TTG--T---AGG---CA-TGGGGA--TTC-TTCCT----TTGAGTGT-GA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT--TTCAC-GATAA--TTCCGACA-TGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGCTT-GAAGGAAG-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-G-G-TGA-TTTGAA-TTTTTGAT-GTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTTAGGTGA-T-GTGAA-----------TCTCGGA---TATCAGTA-C--ATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----G-TAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATG-CAGAGTTTTTTATGCC-AGA-ACTAA--ACATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TA-GG--GT-AAGAGCCT-CATTGGT--TAA-TAT-AAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTT-GC-ATACT-CCAGTG-GGAG-A-GT----AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAGAAAAAAAA--TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGTCA-GAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA--TTG--T---AGG---CA-TGGGG----TTCTTCCG----TTGAGTGT-GA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGCAT-TAATGA-G-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTGGA-TTTT-GAT-GTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCT-ATCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACA-T-TTGGAATATATATT-ATGAT--GAACTTTCAAT-CATA---TTTA-TGCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTTAGGTGA-TAGTGAA-----------TCTCGGAA--TATCATTA-C--ATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----G-TAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-CATTGGT--TAAATA-AAAAGCGGAAGGTCATG-----TGAT---GTG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : GCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATG---CC-CTTG-G-TGGCGAGGGAAC-TTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA---TAT-T----TTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GGC-T-ATATATTTT-TTAGA-CCT-----GCCTT---GGTG-GC-GGGGAACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGCATT-AGTCAT-G-CAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTC-----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACGAA-CTTGCAAATGC-TT-TCATTGACTGGCCGT-CAAGTGTTAGAGC--TT-TAA-------T-CTGTT--TCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTATA------ACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATTG-AGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTTAAA-TCT-CT-C-TGTTTAGATGGTG--ACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GTAA-GAGCCTTCATTGGTATTAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAACGT----AGTGGTAATG-TGATG-A-TGATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAGTGAAAAAA--TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : A-TAGGG------AGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcatcaaatgaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTG-G-TGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TA-----TTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACATTTT-C-AGA-CCTAGATGGTCGT----GTG-TT-GGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CATTG-T--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGT---GTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATC---TCGCTT-CA-TTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA---TATGTGCT------AC--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATATTTTCT-AGA-CCT-----GTCCTCTCGGTG-GC--GGGAACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATTGGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCT----TTGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CGAA-CTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTAA---CCGGTTCTGTT--TCGTTGTGAGCTGACGAAA-CGGTTCTA-TTTG-TTTTATA------ACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATTG-AGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTTAAA-TCT-CT-CTTGTTTAG-TGGTG--ACGTCAagtc
Alignments
lowQualScore : 1111 11 3333333333 111 1111 222 1 11 1 2222 111 11111111 11 555555555555555555 111 2222222 1 111 22222 111 222 111 11 11 1 2222222 1 3333 1 1 1 11 1 2222 1 33333 111 11 1 1 1 666666666666666666 11 1 1 1 333333 1 1 1 1 11 1 1 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 111 222 111 1 2222 1111 11 1 3333 1 222 11 111 2222 2222 11 111 22 11 1 1 1 1 1 111 1 1 1 1 222 2222222 1 1 1 333 1 1 1 1 1 11 11 1 1 444444 1 22 11 1 3333333 1 111 1 1 11 111 1 1111 44444444444 111 1 5555555555555555555555555555555 1 11 1 1 111 1 3333 11 2222 1 11 111 11 111 4444444444444444444444444444 11 33333 22222 11111 2222 1 1 1 3333333333 1 111 1 1 222 1 111 11 11 1 11 1 11 222 1 1 1 1 1 1 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 6 55 8888888888 111 6 6 3 7777 8 444 0 5 11 3 0 3 1111 777 88888888 5 11 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 000 8 00000 444 9999 444 99999 44 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 7 7 3 6 3 3 88 3 8888 3 55555 666 6 7 6 88 7 3 7 3 3 333333333333333333 88 3 6 3 3 888888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 8 444 666 444 6 0000 7777 0 8 88 8 11 0 3 5 2 6666 0 3 111 33 3 33 777 3 0000 7 2 66 3 3333 22 9 3 111 55 55 7 3 3 6 3 7 2 7 7 3 666 3 6 3 3 3 333 3333333 3 3 7 3 000 3 2 3 7 3 3 6 7 0 44 6 88 3 7 3 7 6 77 222222 1 0 3 00 55 33 0 4444444 0 666 0 0 3 33 666 0 2 3333 77777777777 2 555 2 0 3 2222222222222222222222222222222 55 0 3 33 0 0 777 0 1111 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 6666666666666666666666666666 99 7777 8 8 77777 8 8 11 0 77777 6 6 00000 1 4 66 8 1 11111 777 4 66 4 5 5 5 8888 7 2 3 3 7 5555555555 3 7 777 3 3 333 3 999 7 6 7 88 88 7 3 88 3 88 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . . .... . ... . . .. . . . .... ... ........ . .. .................. . . . . . . ... ....... . . ... . ..... ... .... ... ..... .. . ... .. . . . .. . ....... .. . .... . . . . . . . . .. . .... . ..... ... . . . .. . . . . . .................. .. . . . . ...... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . . ... ... ... . .... .... . . .. . .. . . . . .... . . ... .. . .. ... . .... . . .. . .... .. . . ... .. .. . . . . . . . . . . ... . . . . . ... ....... . . . . ... . . . . . . . . . .. . .. . . . . . .. ...... . . . .. .. .. . ....... . ... . . . .. ... . . .... ........... . ... . . . ............................... .. . . .. . . ... . .... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................ .. .... . . ..... . . .. . ..... . . ..... . . .. . . ..... ... . .. . . . . .... . . . . . .......... . . ... . . ... . ... . . . .. .. . . .. . .. ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 88 2222222222 777 7 7 2 2222 0 444 6 0 00 2 0 2 2222 555 88888888 0 00 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 000 0 00000 000 2222 222 88888 66 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 3 3 3 7 3 3 33 3 3333 3 77777 777 7 3 7 33 3 3 3 3 3 000000000000000000 33 3 7 3 3 333333 7 3 3 3 3 7 00 7 3 3 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 0 000 000 000 0 2222 0000 8 0 88 0 00 8 2 0 5 5555 0 2 888 55 2 22 000 2 0000 0 5 55 2 0000 55 2 2 555 55 88 3 3 3 7 3 3 0 3 3 3 777 3 7 3 3 3 333 3333333 3 3 3 3 333 3 0 3 3 3 3 7 3 7 77 7 33 3 3 3 3 7 33 333333 0 0 2 88 88 22 0 2222222 0 222 0 0 2 22 222 0 5 5555 55555555555 5 888 5 0 2 5555555555555555555555555555555 00 0 2 88 0 8 555 0 2222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 2222222222222222222222222222 00 8888 0 0 22222 0 0 00 8 44444 7 7 44444 7 4 11 9 9 11111 888 4 11 4 0 0 7 3333 3 0 3 3 3 0000000000 3 3 777 3 3 333 3 777 3 7 3 33 77 3 3 33 3 33 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CA-TGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCAC-TTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCT-----GCCTT---GGTGCGG-GGGGAACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTGTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGT-CT--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATT-TAAACAC--G--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGA-TTTA-GTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGC--GA---TTG-G-TAGG---CA-TGGGGA--TTTCTTCCT----T--AGTGTTGA--TATGG-CTGG--TTGTGT-TTGTCGGGCATT----AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATGCT-TT-CAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAAT-GCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGA-GTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAAATCTCAA-CTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCATTTT-ATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATA----GAT--ACATTGTTGGAAT-TATA-TGAC-ATTCG--TTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGA-T--TGAG-----------TATTG-------------ATG-ATA------------------CA-AT--------GCCACT-CATTC-T--GTTATAAGAACAAG---GAC-GATTTG---GTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-TGGT--TAACTA-AAAAGCGGAAAGGTATG-----TGATGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATG-TG-TGTA-TGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGAT
gi|10 : gaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGAGT-GGGGAAAACATCCCACTCCCGGAAACTCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCATCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGC-GGAAAGTTG-GGTAGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTG-TGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATC-AA----TCACTGATGA-TAGGG--
gi|13 : -----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATC---AC-GTTGC--TGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACTGGT--TAC-TATAAAAGCGGAATGTCTTG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCAT-GAA---TTGTG-TAAA---AAATGA------TCCTTCCT----CTGGGTG-TGA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGC-GGA---TTG---TAGG---CA-TGGGGA--TTC-TTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT-TT-CAC-GATAA--TTCCGAC-ATGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAG-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-G-G-TGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGA-TATCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----GTAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATG-CAGAGTTTTTTATGCC-AGA-ACTAA--ACATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TA-GG--GT-AAGAGCCT-CATTGGT--TAA-TAT-AAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTT-GC-ATACT-CCAGTG-GGAG-A-GT----AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAGAAAAAAAA--TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA---TTG---TAGG---CA-TGGGG----TTCTTCCG----TTGAGTG-TGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGC-ATTAATGA-G-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTG-GATTTT-GA-TGTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCTA-TCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACATT-T-GGAATATATATT-ATGAT--GAACTTTCAAT-CATAT---TTAT-GCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGA-TAGTGAA-----------TCTCGGAATATCATTA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----GTAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-CATTGGT--TAAATA-AAAAGCGGAAGGTCATG-----TGAT---GTG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : GCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATG---CC-CTTG-G-TGGCGAGGGAAC-TTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA---TAT-T----TTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GGC-T-ATATATTTT-TTAGA-CCT-----GCCTT---GGTG-GC-GGGGAACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGCATT-AGTCAT-G-CAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTC-----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGC-TT-TCATTGACTGGCCGT-CAAGTGTTAGAGC--TT-TA---A----T-CTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTT-AAATC-TCT-C-TGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GTAA-GAGCCTTCATTGGTATTAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAACGT----AGTGGTAATG-TGATG-A-TGATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAGTGAAAAAA--TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : A-TAGGG------AGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcatcaaatgaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTG-G-TGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TA-----TTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACATTTT-C-AGA-CCTAGATGGTCGT----GTG-TT-GGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CATTG-T--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGT---GTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATC---TCGCTT-CA-TTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA---TATGTGCT------AC--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATATTTTCT-AGA-CCT-----GTCCTCTCGGTG-GC--GGGAACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATTGGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCT----TTGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTA---ACCGGTTCTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTA-TTTG-TTTTAT------AACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc
Alignments
lowQualScore : 1111 11 3333333333 111 1111 222 1 11 1 2222 111 11111111 11 555555555555555555 111 2222222 1 111 22222 111 222 111 11 11 1 2222222 1 3333 1 1 1 11 1 2222 1 33333 111 11 1 1 1 666666666666666666 11 1 1 1 333333 1 1 1 1 11 1 1 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 111 222 222222 2222 1111 11 1 3333 1 222 11 111 2222 2222 11 111 22 11 1 1 1 1 1 111 1 1 1 1 222 2222222 1 1 1 333 1 1 1 1 1 11 11 1 1 444444 1 22 11 1 3333333 1 111 1 1 11 111 1 1111 44444444444 111 1 5555555555555555555555555555555 1 11 1 1 111 1 3333 11 2222 1 11 111 11 111 4444444444444444444444444444 11 33333 22222 11111 2222 1 1 1 3333333333 1 111 1 1 222 1 111 11 11 1 11 1 11 222 1 1 1 1 1 1 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 6 6 4444 6 6 99 6 55 8888888888 111 6 6 3 7777 8 444 0 5 11 3 0 3 1111 777 88888888 5 11 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 000 8 00000 444 9999 444 99999 44 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 7 7 3 6 3 3 88 3 8888 3 55555 666 6 7 6 88 7 3 7 3 3 333333333333333333 88 3 6 3 3 888888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 8 444 666 000000 0000 7777 0 8 88 8 11 0 3 5 2 6666 0 3 111 33 3 33 777 3 0000 7 2 66 3 3333 22 9 3 111 55 55 7 3 3 6 3 7 2 7 7 3 666 3 6 3 3 3 333 3333333 3 3 7 3 000 3 2 3 7 3 3 6 7 0 44 6 88 3 7 3 7 6 77 222222 1 0 3 00 55 33 0 4444444 0 666 0 0 3 33 666 0 2 3333 77777777777 2 555 2 0 3 2222222222222222222222222222222 55 0 3 33 0 0 777 0 1111 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 6666666666666666666666666666 99 7777 8 8 77777 8 8 11 0 77777 6 6 00000 1 4 66 8 1 11111 777 4 66 4 5 5 5 8888 7 2 3 3 7 5555555555 3 7 777 3 3 333 3 999 7 6 7 88 88 7 3 88 3 88 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .......... ... . . . .... . ... . . .. . . . .... ... ........ . .. .................. . . . . . . ... ....... . . ... . ..... ... .... ... ..... .. . ... .. . . . .. . ....... .. . .... . . . . . . . . .. . .... . ..... ... . . . .. . . . . . .................. .. . . . . ...... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . . ... ... ...... .... .... . . .. . .. . . . . .... . . ... .. . .. ... . .... . . .. . .... .. . . ... .. .. . . . . . . . . . . ... . . . . . ... ....... . . . . ... . . . . . . . . . .. . .. . . . . . .. ...... . . . .. .. .. . ....... . ... . . . .. ... . . .... ........... . ... . . . ............................... .. . . .. . . ... . .... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................ .. .... . . ..... . . .. . ..... . . ..... . . .. . . ..... ... . .. . . . . .... . . . . . .......... . . ... . . ... . ... . . . .. .. . . .. . .. ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 2222 7 7 22 7 88 2222222222 777 7 7 2 2222 0 444 6 0 00 2 0 2 2222 555 88888888 0 00 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 000 0 00000 000 2222 222 88888 66 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 3 3 3 7 3 3 33 3 3333 3 77777 777 7 3 7 33 3 3 3 3 3 000000000000000000 33 3 7 3 3 333333 7 3 3 3 3 7 00 7 3 3 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 0 000 000 444444 2222 0000 8 0 88 0 00 8 2 0 5 5555 0 2 888 55 2 22 000 2 0000 0 5 55 2 0000 55 2 2 555 55 88 3 3 3 7 3 3 0 3 3 3 777 3 7 3 3 3 333 3333333 3 3 3 3 333 3 0 3 3 3 3 7 3 7 77 7 33 3 3 3 3 7 33 333333 0 0 2 88 88 22 0 2222222 0 222 0 0 2 22 222 0 5 5555 55555555555 5 888 5 0 2 5555555555555555555555555555555 00 0 2 88 0 8 555 0 2222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 2222222222222222222222222222 00 8888 0 0 22222 0 0 00 8 44444 7 7 44444 7 4 11 9 9 11111 888 4 11 4 0 0 7 3333 3 0 3 3 3 0000000000 3 3 777 3 3 333 3 777 3 7 3 33 77 3 3 33 3 33 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCAC-TTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTAT-TATTTTTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATATTTT-T-AGATCCT-----GCCTT---GGTGCGG-GGGGAACCTA-GTA-G-GTTTCTTTTTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTGTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGT-CT--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATT-TAAACAC--G--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGA-TTTA-GTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGC--GA---TTG-G-TAGG---C-ATGGGGA--TTTCTTCCT----T--AGTGTTGA--TATGG-CTGG--TTGTGT-TTGTCGGGCATT----AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATGCT-TT-CAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAAT-GCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGA-GTAATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAAATCTCAA-CTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCATTTT-ATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATA----GAT--ACATTGTTGGAAT-TATA-TGAC-ATTCG--TTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGA-T--TGAG-----------TATTG-------------ATG-ATA------------------CA-AT--------GCCACT-CATTC-T--GTTATAAGAACAAG---GAC-GATTTG---GTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGAT---GGAGTTTTTTATCCCTCAG-ACTAAACACATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-TGGT--TAACTA-AAAAGCGGAAAGGTATG-----TGATGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATG-TG-TGTA-TGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGAT
gi|10 : gaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGAGT-GGGGAAAACATCCCACTCCCGGAAACTCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCATCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGC-GGAAAGTTG-GGTAGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTG-TGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-ATGTAAAAGGATCAGTTAAGAAATGAGTAGGATG-TGGAGTCTTTTATACC-CAACACTAGACA--TGATCTGA-CTGC-TG--AAGAATATC-AA----TCACTGATGA-TAGGG--
gi|13 : -----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--G--ACG-TCGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATC---AC-GTTGC--TGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggacAGGAGCCT-CACTGGT--TAC-TATAAAAGCGGAATGTCTTG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|15 : actaaatcatgattgtgtCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCAT-GAA---TTGTG-TAAA---AAATGA------TCCTTCCT----CTGGGTG-TGA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGC-GGA---TTG---TAGG---CA-TGGGGA--TTC-TTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT-TT-CAC-GATAA--TTCCGAC-ATGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAG-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAAAGTAA---TCAA-T-G-G-TGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGA-TATCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----GTAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATA--------G------GAT-----------TGAGG-AGATG-CAGAGTTTTTTATGCC-AGA-ACTAA--ACATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TA-GG--GT-AAGAGCCT-CATTGGT--TAA-TAT-AAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTT-GC-ATACT-CCAGTG-GGAG-A-GT----AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAGAAAAAAAA--TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA---TTG---TAGG---CA-TGGGG----TTCTTCCG----TTGAGTG-TGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA-CC-TATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGAT-ACGC-ATTAATGA-G-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTG-GATTTT-GA-TGTTGATTC---TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCTA-TCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACATT-T-GGAATATATATT-ATGAT--GAACTTTCAAT-CATAT---TTAT-GCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGA-TAGTGAA-----------TCTCGGAATATCATTA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----GTAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-------GAT-----------TGAGG-AGATG-CAGAGTTga
gi|4 : tttgagtgacata-CATTGGT--TAAATA-AAAAGCGGAAGGTCATG-----TGAT---GTG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : GCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATG---CC-CTTG-G-TGGCGAGGGAAC-TTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA---TAT-T----TTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GGC-T-ATATATTTT-TTAGA-CCT-----GCCTT---GGTG-GC-GGGGAACC---GTGTG-GTTT--TTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGCATT-AGTCAT-G-CAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTC-----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGC-TT-TCATTGACTGGCCGT-CAAGTGTTAGAGC--TT-TA---A----T-CTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTT-AAATC-TCT-C-TGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGTG------T-T-----------TGAGGA-GATATCAGAGTTGTTTATGCC-CAA-ACTAAAC---TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GTAA-GAGCCTTCATTGGTATTAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAACGT----AGTGGTAATG-TGATG-A-TGATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAGTGAAAAAA--TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : A-TAGGG------AGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcatcaaatgaaGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTG-G-TGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA---TA-----TTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACATTTT-C-AGA-CCTAGATGGTCGT----GTG-TT-GGG---CCTAGGTG-A-G--CCGTTTT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacT-TATTTGTTA-----TCGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GCGGGGGAACCT---TG-GTGTTTCTTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactCT-CATTG-T--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGT---GTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGA-ACCCTCGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATC---TCGCTT-CA-TTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA---TATGTGCT------AC--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATATTTTCT-AGA-CCT-----GTCCTCTCGGTG-GC--GGGAACCT---TG-G-TGTTCA-TTTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GTG-------AT-----------TGAGGAA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAAAAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATTGGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCT----TTGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTA---ACCGGTTCTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTA-TTTG-TTTTAT------AACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc
blockSeqs : . . GATC T . TA . A TTGAACCCT C . T T A G CA C AC T G A GAGC . TTATTTG G . ACATTTATTCGCGTATCT . T . G . . C T TT . AGATG CTC GCG TAG TGGT GT AGT GC A T GG . TAGG TC . CTGG C G A T . G . . . . ATCA T T GC C T C TG A . T C T ATTGTAACCGGTT . C G T T . C A . . T G AG G . . . . T A . . . ACG . . C CTTATTTAT . ACG C A T CTTATCCAA GA C A GGATATCT T A C AAG GG GACCAA GACT ATAA . CT A CG T G C CCGA G A TA TT T T TAA A TAGG C C TA T CGTA AG C A CAC A AA A . . C T T A A T . AG A C A G A . ATTGG G . T . T . C . A T A G A TA G GA . T A T G TG TGAA C T A GA TG T G CTGTATG G GGT . C T A C . G GTG AAACATCCCAC G AAC G C T TTGACTCTCTTTGTACTCCACTTTCGCTTCA CC G T TC . G CAT C TCTC T CG GAGC T . G G T CT G A . AT T T C TCA G AG TT A CA T G . CGG GATGTAAAAGGATCAGTTAAGAAA AG ATCA . C AAACA C . CG T A G GTA G T AT A T TTGAT . A GG C . . . . T A . . T GAACGT T A AT A . . . TT A G T . C A . GA T . A A . A T G T G G A G G G G CA . A A . A TT A C G A T A . .
blockSeqs : . . . . . . . . GACGT C . . T C . C C . T . A . . TGTGCT G . . . . . G . . C . CT . . . GC T GTGT TT . . . C . . TAGA TG . C C G . . . . . . . . . . . C . . C . . . . . . CTTTAAT . . . . . . . . . . . . A . . . . . . . . . . A . . . A . AC . . . A A . . . A G . . TG AAA AT . . T . . T G C T . A A CT T T T A G T C TA T CTTT G A A TCC . GA . . . . . . . A . . G . . . . . . TGG . . . . . . . . A . . . A A G . . . . T . TG . A . A T T T . TA . G . . T A C . G TAG . G ATA G . T TTTTTGATTTGTTCACAT C . T . . C . . . T TT . T . T . . T . . . . . . T . A G G . . . . . G TGAGGTGAT AA GTG . . ACA . . . . . G GT A . . . T . . . . . . . . . . . . . . GAGT . A A . . . . . . . . . G . . . . . . . . T T . T . . T G . G . C . . . . A T . . A A . . . .
blockSeqs : . . . . . . . . GACGT C . . T G . G . . . . . . . TTT . . . . . . . . . . . C . . . TT T GTG T . . . T . . ACG . . . . G . . . A . A . A . . . . A . . . CA . . . T . . . . . . . . A A T . T . . . . T . TT . A . CC . G C . A . G . . A . G . . . . . . . TG . G TA T . T TTTTGATTTTGTTCAAT C . T . . . . . . . . . . . G . . T . . . . . . T . A A . . . . . . G GCGTGTT A GCA . . ACA . . . . . G GT A . . . T . . . . . . . . A T . . G . . .
blockSeqs : . . . . . . . . GACGT . . . T T . G . . TTT . . . . . . . . . . . T . . . GC . AG A . . . . . . . A . . . CA . . . T . . G . . . . . . . . . T . A A . . . . . . A GGTGAT A GCA . . AC . . . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . GGAT A GTA . . . . . . T . . . . . . . .
blockSeqs : . . . T . . . . . . . .
blockSeqs : . . . T . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** GACGT***** C** N*** G** TTT***** ** *** ******* GC** T** NG*** T* G** G*** T* A* GGTGAT********************** A* GCA* ACA** ***** GT*** ***
originalCons : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA-ACGTTCGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATC---GC-CTTGCG-TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TAT-TATTTTTTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTG-GC-GGGGAACCTA-GTG-G-GTTTCNTTTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGA--TTCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GTG------GAT-----------TGAGGAAGATG-CGGAGTTTTTTATGCC-CAA-ACTAAACACATGATCTGA-ATGC-TG--GAAGATATTAAA----TCACTGAGGA-TAGGG--GTAAAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
finalCons : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CCGACGT-----CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATCN---C-CTTGG--TGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA---TATTT-----TTAGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATATTTT-T-AGA-CCT-----GCCTT---GGTGGC--GGGGAACCT--GTGNG---TTCT-TTTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTGG--TAGG---CAATGGGGG---TCCTTCCT----TTGAGTG-TGAT-TAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAAT-GTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTACAA-CCCATTTA-CCTCGTGCCGAGAA-GTAA---TCAA-TTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCATTTT-ATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAGGGTGAT----------------------TGAGGA-GATGCA-GAGTTTTTTATGCC-CAA-ACTAAACA--TGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TAGGGGT---AAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Alignments
lowQualScore : 1111 11 11 1111 11 1 11 1 2222 222222 1 1 11 555555555555555555 111 2222222 1 22222 111 11 33 111 111 11 11 1 2222222 1 3333 11 22 1 1 11 1 2222 1 33333 111 11 1 1 1 666666666666666666 11 1 1 1 333333 1 1 1 1 11 1 1 1 1 1 11 1 1 33333 11 1 1 7777777777777777 11 1111 1 1 555555555 11 1 22222222 1 111 222 222222 3333 1111 11 1 3333 1 222 11 111 2222 2222 11 111 22 11 1 22 1 1 1 111 1 1 1 1 222 1 111 1 1 1 2222 1 1 1 1 1 11 11 1 1 444444 1 111 11 1 3333333 1 111 1 1 11 111 1 1111 44444444444 111 1 5555555555555555555555555555555 1 11 1 1 111 1 3333 11 2222 1 11 111 11 111 44444444444444444444444444444 11 11111 11 11111 11111 2222 1 1 1 3333333333 1 111 1 1 222 1 111 11 11 1 11 1 11 222 1 1 1 1 1 1 111 1 1 22 333333 111 1 1 1 1 222 1
lowQualScore : 5 5 2222 5 5 77 5 33 77 55 5 0 888 6 6 3 5555 8 11 0 5 11 3 0 3 1111 888888 0 0 2 33 999999999999999999 8 8 8 0 0 8 444 6666666 0 8 8 8 8 00000 444 8 88 8 00 8 222 8 0 444 11 8 0 3 33 0 2222222 55 0 0000 2 2 44 00 3 3 88 3 8888 3 55555 666 6 7 6 88 7 3 7 3 3 333333333333333333 88 3 6 3 3 888888 6 3 3 3 3 6 44 6 3 3 3 3 7 3 88 3 3 44444 33 0 0 5555555555555555 33 2222 0 3 7 555555555 88 5 8 99999999 5 3 8 444 666 000000 3333 7777 0 8 88 8 11 0 3 5 2 6666 0 3 111 33 3 33 777 3 0000 7 2 66 3 3333 22 9 3 111 55 55 7 3 00 3 7 2 7 7 3 666 3 6 3 3 3 333 3 7 666 3 3 7 3 8888 3 2 3 7 3 3 6 7 0 44 6 88 7 3 3 7 6 77 222222 1 0 3 777 3 2 33 0 4444444 0 666 0 0 3 33 666 0 2 3333 77777777777 2 555 2 0 3 2222222222222222222222222222222 55 0 3 33 0 0 777 0 1111 3 00 1111 3 0 2 6 6 44 6 6 6 99 6 6 1 111 1 88 55 6 99 6 6 6 000 44444444444444444444444444444 6 6 00 8 8 33333 0 8 8 11 66666 6 6 77 6 4 66 8 1 11111 777 4 66 4 5 5 5 8888 7 2 3 3 7 5555555555 3 7 777 3 3 333 3 999 7 6 7 88 88 7 3 88 3 88 555 3 3 1 7 6 7 3 3 3 6 3 6 3 666 3 3 00 888888 3 111 0 0 6 3 0 0 333 3
lowQualScore : . . .... . . .. . .. .. .. . . ... . . . .... . .. . . .. . . . .... ...... . . . .. .................. . . . . . . ... ....... . . . . . ..... ... . .. . .. . ... . . ... .. . . . .. . ....... .. . .... . . .. .. . . .. . .... . ..... ... . . . .. . . . . . .................. .. . . . . ...... . . . . . . .. . . . . . . . .. . . ..... .. . . ................ .. .... . . . ......... .. . . ........ . . . ... ... ...... .... .... . . .. . .. . . . . .... . . ... .. . .. ... . .... . . .. . .... .. . . ... .. .. . . .. . . . . . . ... . . . . . ... . . ... . . . . .... . . . . . . . . . .. . .. . . . . . .. ...... . . . ... . . .. . ....... . ... . . . .. ... . . .... ........... . ... . . . ............................... .. . . .. . . ... . .... . .. .... . . . . . .. . . . .. . . . ... . .. .. . .. . . . ... ............................. . . .. . . ..... . . . .. ..... . . .. . . .. . . ..... ... . .. . . . . .... . . . . . .......... . . ... . . ... . ... . . . .. .. . . .. . .. ... . . . . . . . . . . . . . ... . . .. ...... . ... . . . . . . ... .
lowQualScore : 7 7 1111 7 7 99 7 66 99 77 7 7 666 7 7 2 0000 0 00 6 0 00 2 0 2 2222 888888 0 0 5 88 000000000000000000 0 0 0 8 6 2 000 0000000 0 0 0 0 0 00000 000 0 00 0 00 8 444 0 8 000 00 0 8 8 88 0 2222222 88 0 0000 5 5 77 00 3 3 33 3 3333 3 77777 777 7 3 7 33 3 3 3 3 3 000000000000000000 33 3 7 3 3 333333 7 3 3 3 3 7 00 7 3 3 3 3 3 3 33 3 3 33333 88 0 0 0000000000000000 88 2222 0 3 3 777777777 22 0 0 00000000 8 8 0 000 000 444444 4444 0000 8 0 88 0 00 8 2 0 5 5555 0 2 888 55 2 22 000 2 0000 0 5 55 2 0000 55 2 2 555 55 88 3 3 00 3 3 0 3 3 3 777 3 7 3 3 3 333 3 3 777 3 3 3 3 7777 3 0 3 3 3 3 7 3 7 77 7 33 3 3 3 3 7 33 333333 0 0 2 888 2 5 22 0 2222222 0 222 0 0 2 22 222 0 5 5555 55555555555 5 888 5 0 2 5555555555555555555555555555555 00 0 2 88 0 8 555 0 2222 2 00 2222 2 0 5 7 7 00 7 7 7 22 7 7 7 777 7 33 88 7 22 7 7 7 222 88888888888888888888888888888 7 7 33 0 0 00000 8 0 0 00 77777 7 7 99 7 4 11 9 9 11111 888 4 11 4 0 0 7 3333 3 0 3 3 3 0000000000 3 3 777 3 3 333 3 777 3 7 3 33 77 3 3 33 3 33 777 3 3 0 3 7 3 3 3 7 7 3 7 3 777 3 3 77 333333 2 000 0 0 5 2 0 0 333 3
consensus : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CGA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATCN---C-CTTG--GTGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA------TATTT-TT-AGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATA-TTTT-TAGA-CCT-----GCCTT---GGTG-GCGGGG-AACC-TAGGTGNGTTC--TT-TTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGA---TTCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAA-TGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTAC-AACCCATTTA-CCTCGTGCCGAGAA-GTAA---TC-AATTG-G-TGA-TTTG-AATTTTTGA-TGTTGATT-C--TTGCC-TTCACGAGATC-CTAAGCA-TTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GT-G-------AT-----------TGAGG-AG-ATG-CAGAGTTTTTTATGCC-CAA-ACTAA--A--CATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TAGGG--GT-AAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
Reference ( family-1188 ) : NNGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATCN---C-CTTG--GTGGCGAGGGAACCTTGGTGGTTCTTT--TTA-GGCTAGGTGGCT----ATA------TATTT-TT-AGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGGGCC---TAGGT-------GGCCT-ATATA-TTTT-TAGA-CCT-----GCCTT---GGTG-GCGGGG-AACC-T--GTGNGTTC--TT-TTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCNN--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCGC---CCTTGGTGGCATTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCT----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCCT--GGAGACACG-AACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAGAGC-ATT-TA---AC--GT-CTGT--TTCGGTGTGAG-TGACGAAAGCGGTTCTA-TTTG-TTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGAGTTGA-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAACATTTTTTTGTGCACATAT-TTTGATTTGTCTC-GT--A-GTGGTTTTGA--TTAT-CAGAAAT-GAGGGA-------AC-------ATGA--TAGGA-ACGGA-ATTCCT-TGCCTTGCAATCCAA--------AGGGACACTGACGCCCTAGT-GAT--------TTAATCACGC-GGA---TTG-G-TAGG---CAATGGGGG---TCCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGTGTCGTCGGGCATTC---AGAT-TAATTTTAACCTATAT-AATCTT--AACAGAACATGAA---GTTTGTTCCAGATAGTATAATGCTCTT-CAC-GATAAATTCCCGAC-ATGGAGAGTTGAATATTGGTTTC-AA-CCCTATGAA-TGTTGAGATGAGGGAACAAGCGGGCATGGATTACGC-TTGAAGGA-G-AATCCCT-TTGCCTAC-AACCCATTTA-CCTCGTGCCGAGAA-GTAA---TC-AATTG-G-TGA-TTTG-AATTTTTGA-TGTTGATTCC--TTGCC-TTCACGAGATC-CTAAGCA-TTTTATT-TCTGGTCATATTCACTCTTTCGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGACGAT--G--CTTTNAAT-CATATN-TTTATTGCATT-AATG-ATGT---TA-GTCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGAATATCAGTA-CATGTATATT--TTCGNTTTG---TTCACAT--------GCCACT-CATTCTT--GTTA-AAGANCAAG---GAA-CATTT----GTAATTTTTTCATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG---G-GT-G-------AT-----------TGAGG-AG-ATG-CAGAGTTTTTTATGCC-CAA-ACTAA--A--CATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TAGGG--GT-AAGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-GTTAT----GGGTTGGC-ATACT-CCAGTGTGGAG-ACGT----AGTGGTAATG-TGATG-A-TGATGATATT-TACCCACC-CA---CCACTTGC-CCTT-AACGAATGTGTTTTATTGGAGAAAAAAAA--TCCCATAGTAAAGCATGTACATGTATGCATTTCTAA-TCATGGT--TGATGA-TGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAANTATTGATACATGT-CA-TGGGTCGTGTTTACTATGGA-TGCA-GTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGCA-GAGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-AT-TTA---AAACACTG-AGGAT
gi|1 : GCTTTTCTCGTGTATGCACG----ACTA-ACAGCTAGGT--CCTACAAATCC--GAGACGTTCGACCTACACTGGGCAAGGTATTTT-AACTT-ATTTGTTATCCGAGC-CTTGTGGTGGCGAGGGCAC-TTGGTGGTTCTTT--TTA-GCCTAGGTGGCT----ATAAATTATTATTT-TTTAGACACCTGCTTGGGTG------------------GGCGG-GGGCACCTTGGTGCGTTTTTTTTAAGGCCCCCTGGGTTTTGGGGGGCCT-ATATA-TTTT-TAGATCCT-----GCCTT---GGTGCGGGGGG-AACC-TA-GTAGGTTTCTTT-TTAGGCCTAG---GTGG--CT-A-ATATTTT--CAGAGCCATAAGGCTGGTCGTGTGTTCGGCCTAGGTGGGATCGTTTTCGCA--CCTTGGTG-CATCTAGTCATCGGCAGACTACGTGATTCGTTTGTGAACTTTGGCGAGTTCTTGTTGCTGGCCCCTTGGTGGCGAAAGCATAGTTATT----ATTGCTCATAT-ATAGTGGTTCTGTCTTTAT-CACTGTATACTCTGGAGTGCAAACCAAGTTGGT-CT--GGAGACACGAAACTTGCACGTGCTTT-TCATTGACTGGCCGT-CAAGTGTTAAAGCTATT-TAAACAC--G--CTGTTATTCGGTGTGAG-TGTAGAAAGCGGTTCGA-TTTA-GTTTATATAATAAACAGTACATTAGTTATGTACTTTGGTTTTTTAAAGCAC-ATTTATTGGAGACGAAA-TTCGCGGTGCTTTG-GTTGATGTTAAAATCTTCTGCTTGTTTAG-TGGTGCGACGTCAACATTTTTTTGTGCACATATATTTGATTTGTCTCTGTTAG-GTGGTTTTGAATTTATGAAGAAAT-GAGGGA-------ACTTTTTATATGAAGTAGGACACGGA-ATTCCT-TGCCTTGCAATCCAA----------GGACACTG-TGCACTAGT-GAT--------TTAATC-CGC--GA---TTG-G-TAGG---C-ATGGGGAT--TTCTTCCT----T--AGTGTTGA--TATGG-CTGG--TTGTGT-TTGTCGGGCATT----AGAT-TAATTTTAACCTA-ATGAATCT----ACAGAACATGAA---GTTTGTTCCAGATAG-ATAATGCT-TT-CAC-GAT-AATT--CGACAATG--GAGTTGAATATGCGTTTCTAATCCCTATGAA-TGCTGAGATGAGGGAACAAGCGGGC-TGGATTACGCTTTGAAGGA-GTAATCCCT-TTGCCTAC-AACCCATTTA-CCTCGTGCCGAGAA-GTAAATCTC-AACTGTGCTGA-TTTGAAATTTGTGATTATTGATTACGTTTGCCGTTTACGAGATCGCT-AGCA-TTTTATT-TCTGGTC-TATTCACTCTTTTGTGTCAGAATGGGAATCT-TTATA----GAT--ACATTGTTGGAAT-TATA-TGAC-ATTCG--TTTTAAAT-C--ATC-TTTATTGCATTCAATG-ATGT---TA-GTCTA-ATT---TCATTTTGGCTT-TGCTAGCTATACACGATACCTTTAAGGTGA-T--TGAG-----------TATTG-------------ATG-ATA------------------CA-AT--------GCCACT-CATTC-T--GTTATAAGAACAAG---GAC-GATTTG---GTAATTTTTTCATG----CTTTGATCAACTTTGGGT-T-GCTAATAAATA-TGGA-TA-TAGTATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTT--TT--GAG-TTTTT--GTTTACAT-GA-TTGGAAT--GGAATAG---G-GTGG-------AT-----------TGAGGAAG-ATG---GAGTTTTTTATCCCTCAG-ACTAAACA--CATGATCTGA-ATGCGTG--GAAGATATTAAAACACTCACT-AGGA-TAGGGGAGTAAAGAGC---CA-TGGT--TAACTA-AAAAGCGGAAAGGTATG-----TGATGAAGT--TCGGTCAT--TCTT-TGAACAATCCATTGCTTGGTTGTATGCGGTTTGGCAATACTACCAGTGTGGA--CCGTAGTCAGTGGTAATG-TG-TGTA-TGATGATATT-TACCCACCACACCCCCACTTGCGCCTTAAACGAATGTGTTTTATTGGAGAAGAAAAATTTCCCATAGTAAAACATGTACATGTATGCATTTCTAAGTCATGGT--TGATGA-TGAATTAATTTTATCTTAGTCCTGAATTGTC-TACTATGCTGCAACTA-TGATACA-GT-CA-TGGGTCGT-TTTACTATGGA-T-CA-GTGTTTTCATGTCCTCC-CCATATCTCAG-ATTTCTGTCTCTGCAGGAGTTTTTTATGCACCCCCCCAGAACT-AACATGA-TGCTG-AATG-CT-GAAG-AT-TTATAGAAACACTGAAGGAT
gi|10 : gaTCAATTCATATGATCTCTT-CAT--AATGGATGTCTGTATGTCCAGATTGGTCCATTTTGG-TT-TGCTAGCTACAC--GAT---TTT-A-GTGAGT-GGGGAAAACATCCCACTCCCGGAAACTCAGTACCATATATATTGACTCTCTTTGTACTCCACTTTCGCTTCAACCCCTGCATTCTTTCGTTA-AAGTGCAAGCATAAACCATTTTCTCATCATTTTCGCATAGAGCCTTT-ATCGACTTT-GGT-T-GCCAAATAATA--GAT-TA-TA--ATT--TTGcaccggg
gi|11 : GGACACC-ACGCC-TAAC-GATGGATATCTTTCTCCACGC-GGAAAGTTG-GGTAGGGACCAATGGGGGACTTCCTTCCTATAATTGAGTG-TGCCTTAGTAACTAGCGTTG-GTGTCTT--GGCATTCCGAAGATGTAATCT--ACA-ATAT-AATCTTAAAACAG-CCATGAATAGGTTTGTCTCTGCCAGT-CAA-GCTCGTATAC---TCAATCCACGTC--TGAAGAGT
gi|12 : aA-TTTT-GAGCATTGGTCAGGAGAAGGTTG-TG--GTA-TATTTCAACTTATA--GA-GT-GAAT--GTAAAAG---G-AT-GTAAAAGGATCAGTTAAGAAATGAGT-AGGATG-TGGAGTCTTTTATACC-CAACACTAG--A--CATGATCTGA-CTGC-TG--AAGAATATCAAT-----CACTGATGA-TAGGG--
gi|13 : -----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcaatatctgtgatataa
gi|13 : GCTTTTCTCGTGT-T-CACG----ATAG-ATAGCTAG-T--ACT-CGA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AAC----TTTGTTATCA---C-GTTG--CTGGCGAGGGAACCTTGGTGGTTCTTT--cagtaggacgcttttctcgtgttcacgatagatagctagtactcgaccgacgtcgacctactgggaaggtattttaactttgttatcacgttgctggcgagggaaccttggtggttcttt
gi|14 : tgatgtgtcggtcattctttagacatccttgctcgcagtaggac--GT-AGGAGCCT-CACTGGT--TAC-TATAAAAGCGGAATGTCTTG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-GTGCT
gi|14 : actaaatcatgattgtGTTTTCCTCGTGC-T-CCCG----ATAG-AACTTTAG-T--CCT-CGA--CC--GA--CGT-CGA-CTAC--Taacagaaggacgttttcctcgtgctcccgatagaactttagtcctcgaccgacgtcgactactcg
gi|15 : actaaatcatgattgtgtaggagcctcactggttactataaaagcggaatgtcttgtgatgtgtcggtcattctttagacatccgtgctaacagaaggacCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gcg
gi|15 : GCTTTTCTCGTGT-T-CACG----ACAA-ATAGCTAA-T--ACT-CAA--CC---------------------GGG-AAGGTATTTT-AACTTTATTTGTTAcagtaggacgcttttctcgtgttcacgacaaatagctaatactcaaccgggaaggtattttaactttatttgtta
gi|16 : cctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGTGCACATAT-TTTGATTTGTCTC-GT--A---GATTTTGA--TCAT-CAGAAAT-GAGGGA-------A--------ATGA--TAGGA-AC-GA-ATT
gi|17 : T-GAT--------TTA-TCGCAT-GAA---TTGTG-TAAA---AAATGA------TCCTTCCT----CTGGGTG-TGA-TTGGTG-CTAG--TTG
gi|18 : CAGAACTAAACATGA-T-CTG-AATG-CTGGAAG-GT-
gi|2 : TGCACATAT-TTTGATTTGTCTC-GT--ACGTGGTTTTGA--TTAT-CAGAAAT-GAGGGACTTATTTAT-------ATGA--TAGGA-ACGTA-ATTCCTATGTCTTGCAATCCAACTTATCCAAGGGACACTGACGCCCTAGT-GAT--------TTA-TCACGC-GGA---TTG---TAGG---CA-TGGGGA---TTCTTCCT----TTGAGTG-TGA-TTAGTG-CTGG--TTGTGT--CGTCGGGCATT----AGAT-TAATTT--ACTTATA---ATCTT--AACAGAACATGAA---GTTTGT-CCAGATAGTATAATGCT-TT-CAC-GATAA--TTCCGAC-ATGG-GAGTTGAATATTGGTTTC-AA-CCCTATGAA-TGT-GAGATGAGGGAACAA-CGGGCATGGATTACGC-TTGAAGGAAG-AATCCCT-TTGCCTAC-AACCCATTTA-CCTCGTGCCGAGAAAGTAA---TC-AAT-G-G-TGA-TTTG-AATTTTTGA-TGTTGATTCT--TTGCC-TT-ACGAGATC-CTAAGCA-TTTTATT-TCTGGTCATATTCACTCTTTTGTGTCAGAATGGGAATCTATTATAGATTGAT--ACATT-TTGGAAT-TATATTGATGA------CTTTAAAT-CATATT-TTTATTGCATT-AATG-ATGT------ATCCA-ATTG--TCATTTTGG-TT-TGCTAGCTATACA-GAT--CTTT-AGGTGA-T-GTGAA-----------TCTCGGA-TATCAGTA-CATGTATATT--TTGATTTTG---TTCA-AT--------GC-ACT-CATTCTT--GTTA-AAGA-CAAG---GAA-CATTT----GTAATTTT--CATG----CTTT-ATCAACTTTGGGT-T-GCCAATAAATA-TGAA-TA-TA-TATT--TTGGTTTTA-TTTT-GAGTATTGG---GAAGAGGGTTA-TT--GAG-TTTTT--GTTTACAT-GA-TT-GAAT--GGAATAG--------G-------AT-----------TGAGG-AG-ATG-CAGAGTTTTTTATGCC-AGA-ACTAA--A--CATGATCTGA-ATGC-TG--GAAGATATTAAA-----CACTGAGGA-TA-GG--GT-AAGAGCCT-CATTGGT--TAA-TAT-AAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-ATGCTT-GTTAT----GGGTT-GC-ATACT-CCAGTG-GGAG-A-GT----AGTGGTAATGTTGATG-ATTGATGATATT-TACCCACC-CA---CCACTTGC-CC----ACGAAT-TG-TTTATTGGAGAAAAAAAA--TCCCATAGTAAA-CATGTACATGTATGCATTTCTAA-TCATGGT--TGATGATTGA--TAATTTTATCTTAGTCCT--ATTGTC-TA-TATGCTGCAAATATTGATACATGT-CA-TGGGTCATGTTTACTATGGA-TGCAGGTGTTTTCATGTCCT-C-CAATAT-TCAG-ATTTCTGTCTCTGC---AGTTTTTTATG------CCCAGAACTAAACATGA-T-CTG-AATG-CTAG-AG-ATATTA---AAACACTG-AGGATatt
gi|3 : TTTGA--TTGT-CAGAAATCGAGGGA-------A--------AGAA--TAGGA-A--GACATTGTT-TGCCT-GCAATCCAA--------AGGGACACT-ACGCC-TAGTAGAT--------TTAATCACGCCGGA---TTG---TAGG---CA-TGGGG----TTCTTCCG----TTGAGTG-TGA-TTAGTG-CTGG--T-GTATGTCGTCGGGCATTT---AGAT-TA--TTTA--CTATAT-AATCTT--AACAGAACATGAA----TTTGTTC-AGATAGTATAATGCTCTTTCACAGATAAATTCC-GAC--TGGAGAGTTGA-TATTGGTTTC-AA--CCTATGAATTGTTGCGATGAAGGAAAAAACGGGCATGGA-TACGC-ATTAATGA-G-AATCCCTATTGC--ACAAACCCATTTAGCCTCGTGCCGAGAA-GTAA---CCAAATTG-G-TGAGTTTG-GA-TTTTGA-TGTTGATT-C--TTGCT-TTCACGAGATC-CTAAGCATTTTTATTATCT-ATCATATTCACTCTTTCGTGTCAGAATGGGAATC-ACTAGTGATTAATGAACA-T-TTGGAATATATATT-ATGAT--GAACTTTCAAT-CATA---TTTA-TGCATT-AATG-ATGT---TA--TCTA-ATTG--TCATTTTGG-TTCTGC-AGCTATACA-GAT--CTTT-AGGTGA-TAGTGAA-----------TCTCGGAATATCATTA-CATGTATATT--TTTGATTTG---TTCACAT--------G-CACT-CATTCTT--GTTA-AAGACGAAG---GAA-CATTT----GTAA---TTTCATG----C-TT-ACAAACTTTTGGCGT-GCCAATAAATACTGAA-TA-TA-TTAT--TTAGTTTTATTTTT-GATTATTGG---GAAAAGGGTTA-TTG-GAG-ATTTT--GTTTAC-T-AAGTT-GAAT---GAATAG---G-GT-G-------AT-----------TGAGG-AG-ATG-CAGAGTTga
gi|4 : tttgagtgacata-CATTGGT--TAAATA-AAAAGCGGAAGGTCATG-----TGAT---GTG-T-GGTCAT--TCTT-TAGAC-ATCC-TTGCTC-G
gi|4 : GCTTTTCTCGTGT-T-CACG----ACAG-ATAGTTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTTTAACTTTATTTGTTATGC---C-CTTG--GTGGCGAGGGAAC-TTGGTGGTTCTTT--T-A-GGCTAGGTGGCT----ATA------TATTT-TT-AGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-GTTCTTTTTAGG-CC---TAGGT-------GG-CT-ATATATTTTT-TAGA-CCT-----GCCTT---GGTG-GCGGGG-AACCGT--GTG-GTTT--TT-TTAGGCCTAG---GTGG--CT-ATATATTTT--CAGA-CCTA--GG-TGGTCGTGTGTTCGGCCTAGGTGAG-CCGTTTTCG----CCTTGGTGGCA-TTAGTCAT--GCAGACTACGTG-TTCGTTTGTAAACTTTGG-GAGTTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATT----ATTGCTCATAT-ATAGTGGTTC-----TTGT-C-TTATATACTCTGGAGTGCAAACCAAGTTGGTCTT--GGAGACACG-AACTTGCAAATGC-TT-TCATTGACTGGCCGT-CAAGTGTTAGAGC--TT-TA---A----T-CTGT--TTCCGTGTGAG-TGACGAAAGCGGTTCTATTTTGTTTTTAT------AACAGTACATTAGTTATGTACCTTTGTTTTTTAAAGCAC-ATTTATT-GAGA-GAAA-TTCGAGGTGCTTTGA-TTGA-GTT-AAATC-TCT-C-TGTTTAGATGGT--GACGTCAcagtaggacgcttttctcgtgttcacgacagatagttagtactcaaccgacgtcgacctactgggaaggtatttttaactttatttgttatgcccttggtggcgagggaacttggtggttcttttaggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtggttctttttaggcctaggtggctatatattttttagacctgccttggtggcggggaaccgtgtggtttttttaggcctaggtggctatatattttcagacctaggtggtcgtgtgttcggcctaggtgagccgttttcgccttggtggcattagtcatgcagactacgtgttcgtttgtaaactttgggagttcttgttgctggccttggtggcgaagcatagttattattgctcatatatagtggttcttgtcttatatactctggagtgcaaaccaagttggtcttggagacacgaacttgcaaatgctttcattgactggccgtcaagtgttagagctttaatctgtttccgtgtgagtgacgaaagcggttctattttgtttttataacagtacattagttatgtacctttgttttttaaagcacatttattgagagaaattcgaggtgctttgattgagttaaatctctctgtttagatggtgacgtcaca
gi|5 : cattggttaaataaaaagcggaaggtcatgtgatgtgtggtcattctttagacatccttgctcgcagtaggacAACTTTGGGT-TTGCCAATAAATA--GAA-TAATA-TATT--TTGTTTATA-TTTTTGAG-ATTGG---GAAGAGGGTTAGTT--GCG-TTTTT--GTTTACAT-GA-TT-GAATCGGGAATAG---GCGT-G-------TT-----------TGAGG-AG-ATATCAGAGTTGTTTATGCC-CAA-ACTAA--A--C-TGATCTGACATGC-TGCGGAAGATATTAAA-----CACTGAGGAATAGGG--GT-AAGAGCCTTCATTGGTATTAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTGATCGGTCAT--TCTTCTAGAC-A-CC-TTGTTT-GTTAT----GGG-TAGC-ATACT-CCAGTGTGGAGAACGT----AGTGGTAATG-TGATG-A-TGATGATATTATACCCACC-CA---CCATTTGC-CCTT-ATTG-ATGTGTTTTATGCAAGTGAAAAAA--TCCCACTCTAAAG------CATGTATGC-TTTCTAA-TTTTGATGATGATGA-TGA--TAATTTTATCTTAGTCCT---TTGTCATA-TATGCTGCAATAATT-ATATATGTGCAGTGGGTCTTGTTTACTATGGAGTGCA-GTGTTTTCATATCGT-CAAAATAT-TCAGAATTTCTGTCTCTGCA-GAGATTTTTAGG------CCCAGAACTAAACATGATT-CTGAAATGCCTGGAAGTAT-TTA---AAACACTG-AGGATca
gi|6 : ATCAAA--------TGAA-A-TAGGG------AGAGCCT-CATTGGT--TAA-TATAAAAGCGGAAGGTCATG-----TGAT---GTG-TCGGTCAT--TCTT-TAGAC-ATCC-TTGCTC-Gaga
gi|6 : ttaaaaaactcGCTTTTCTCGTGT-T-CACG----ACAG-ATAGCTAG-T--ACT-CAA--CC--GA--CGT-CGACCTAC--TGGG-AAGGTATTTT-AACTTTATTTGTTATCG---C-CTTG--GTGGCGAGGGAACCTTGGTGGTTCTTT--TTAGGGCTAGGTGGCT----ATA------TATTT-TT-AGAC--CTGCCTTGGTG------------------G-CGG-GGGAACCTTGGTG-TTTCTTGTTA-GGCC---TAGGT-------GG-CT-ATACA-TTTT-CAGA-CCTAGATGGTCGT----GTG-TTGGG----CC-TAGGTGAGCCG--TT-TT-CGCCTTG---GTGG--CT-TTA-GTCATGGCAGA-CTAC---G-TGTTCGTTTGT--GAACTTTGGGAG-CTCTTGTTGCTGGCCTTGGTGGCcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcgccttggtggcgagggaaccttggtggttctttttagggctaggtggctatatatttttagacctgccttggtggcgggggaaccttggtgtttcttgttaggcctaggtggctatacattttcagacctagatggtcgtgtgttgggcctaggtgagccgttttcgccttggtggctttagtcatggcagactacgtgttcgtttgtgaactttgggagctcttgttgctggccttggtggcgaagcatagttattatcaattgctc
gi|6 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacGCCTTGGTG------------------G-CGA-GGGAACCTTGGTG-GTTCTTTTTAGGGC----TAGGT-------GGC-T-ATATA-TTTT-TAGA-CCT-----GCCTT---GGTG-GCGGGGGAACC-TTGGTGT-TTC--TTGTTAGGCCTAG---GTGG--CT-ATACATTTT--CAGA-CCTA--GA-TGGTCGTGTGTTGGGCCTAGGTGAG-CCGTTTTCGC---C-TTGGTGGC-TTTAGTCAT-GGCAGACTACGTG-TTCGTTTGTGAACTTTGG-GAGCTCTTGTTGCTGGCC--TTGGTGGCGAA-GCATAGTTATTATCAATTGCTCgaagcatagttattatcaattgctc
gi|7 : ttaaaaaactcatcaaatgaaatagggagagcctcattggttaatataaaagcggaaggtcatgtgatgtgtcggtcattctttagacatccttgctcgcagtaggacgcttttctcgtgttcacgacagatagctagtactcaaccgacgtcgacctactgggaaggtattttaactttatttgttatcCT-CATTG-T--TAA-TATAAAAGCGGAAGGTTATGTTGATTGGT---GTG-TCGGTCATGGTCTT-T
gi|7 : TTTTTCGTGT-T-CACGGATCATAGTATAGCTAG-TTAGCT-CAAA-CCTTGAACCCT-CGACCTA---TGTA-TAAGTATTTT-AACTTTATTTTGTATCT---CGCTTC--ATTATGAGA---------TAGTTCTTTACCTA-AGTT-GGTGTCTGAGCATA------TATGTGCT-A--C--CTGTGTTGATGACATTTATTCGCGTATCTG-CAGTGGGAACCTT--TG-GT----------GCC---TATGT-------GGCCTTATATA-TTTTCTAGA-CCT-----GTCCTCTCGGTG-GCGGG--AACC-T--TGGTGTTC--AT-TTAGGCCTAAAGTGTGGGCCTAATATATtatatcaatctccctgccgcagtgcatcaggaatccatttttcgtgttcacggatcatagtatagctagttagctcaaaccttgaaccctcgacctatgtataagtattttaactttattttgtatctcgcttcattatgagatagttctttacctaagttggtgtctgagcatatatgtgctacctgtgttgatgacatttattcgcgtatctgcagtgggaacctttggtgcctatgtggccttatatattttctagacctgtcctctcggtggcgggaaccttggtgttcatttaggcctaaagtgtgggcctaatatat
gi|8 : ctcattgttaatataaaagcggaaggttatgttgattggtgtgtcggtcatggtcttttatatcaatctccctgccgcagtgcatcaggaatccaTTTGTGT-T-GCCAATAAA-A-TGAAGCA-TA-TGCTATTTAGTTTTA-GTTT-TAGTATTAT---T-------TTA-TTTTGAGATTTTT--GTT-ACATTGA-TT-TA-T--AGGATAGTGAG-GT-G-------AT-----------TGAGG-AA-ATG-TAGAGTTTTTTATGCC-CAA-AGCAA--AAACATGGTCTGA-ATGC-TG--GAAGAAATTAAA-----CACTGAGGA-TA-GG--GT-AAGAG-CT-CATTGGT--TAA-ATTAAAA
gi|9 : ataccagtaaactattgtaatattttcgattttgtttaataatgacgcgtatattatttgttttgtaaaaaaaaaacctgactattgaTCATATTATAGTGATTCT----TTGTGC-TTATATACTCTGGAGTGCAAAC-AAGT-GGTCCTTGGGAGAC-CG-AACTTGCACGTGCTTTCTCAGTGACTGACCGTTCAAGTGTTAGAG--ATTGTA---ACCGGTTCTGT--TTCGTTGTGAGCTGACGAAA-CGGTTCTA-TTTG-TTTTAT------AACAGTACATAAGTTATGTAACTTTGTTTTTTAAAG-ACAATTTATT-GAGA-GAAATTTCGA-GTGCTTTGAGTT-A-GTT-AAATC-TCT-CTTGTTTAG-TGGT--GACGTCAagtc