lowQualScore : 111 3333333333 555555555555555555555 2222 1 1 2 1 11 111 2222 11 555555555 11 22222 111 111 1 111 1 11 111 11 22222222222 1 11 1 11 11 1 1 1111 1 22 222222 11 1 11 22222222222 1 11 222 222 1 11111111 11 44444444444444 1 11111 2222 1111 11 2 33333 1 2 11 1 1 777777777777777 11111 22222 1 1 1 1 11 1 11111 1 66666666666666 1 1 1 22222222 1111 555555555555 1111111111 22222222222 11111 11 11111 44444444444444 11111 1 22222
lowQualScore : 444 8 5555555555 5 555555555555555555555 6 8 0000 0 5 5 8 0 8 0 6 0 5 8 8 8 2 8 11 3 444 8 1111 11 6 8 55 222222222 88 44 3 00000 444 444 0 99 0 5 444 6 11 444 8 8 11 8 99999999999 0 33 0 22 11 0 0 8888 0 9 99 44 222222 33 0 33 55555555555 2 0 3 33 222 3 7 777 0 44444444 88 22 66 8 33333333333333 6 8 11111 8 5555 8888 8 11 0 0 4 66666 1 0 0 0 44 3 8 5 0 6 0 555555555555555 8 8 0 3 33333 00000 4 5 3 3 0 3 0 3 2 55 0 2 33 0 2 0 88888 0 2 9 3 11111111111111 0 6 0 2 7 8 55 99 00000000 5 8888 888 999999999999 5555555555 666 99999999999 44 3 3 2 6 4 11111 3 3 88 3 3 66 666 3 55555 00000000000000 4 3 66666 0 99 99999
lowQualScore : ... . .......... . ..................... . . .... . . . . . . . . . . . . . . . .. . ... . .... .. . . .. ......... .. .. . ..... ... ... . .. . . ... . .. ... . . .. . ........... . .. . .. .. . . .... . . .. .. ...... .. . .. ........... . . . .. ... . . ... . ........ .. .. .. . .............. . . ..... . .... .... . .. . . . ..... . . . . .. . . . . . . ............... . . . . ..... ..... . . . . . . . . . .. . . .. . . . ..... . . . . .............. . . . . . . .. .. ........ . .... ... ............ .......... ... ........... .. . . . . . ..... . . .. . . .. ... . ..... .............. . . ..... . .. .....
lowQualScore : 000 0 0000000000 4 222222222222222222222 0 0 2222 8 8 6 0 8 6 8 0 6 2 0 0 0 8 0 00 8 000 0 0000 00 0 0 88 444444444 88 00 2 00000 000 000 0 44 8 0 000 0 00 000 0 0 00 8 00000000000 0 22 0 55 00 0 0 5555 0 8 88 55 222222 88 0 22 55555555555 5 0 2 88 000 2 0 555 0 22222222 88 66 88 0 22222222222222 0 0 66666 0 0000 4444 0 00 8 8 0 00000 8 8 0 8 00 8 0 0 8 0 8 000000000000000 0 0 8 2 00000 00000 0 0 2 2 0 2 0 2 5 55 0 5 00 0 5 2 00000 0 5 2 0 00000000000000 0 0 0 5 7 3 33 88 00000000 7 7777 888 000000000000 3333333333 444 99999999999 66 3 3 5 7 9 11111 6 6 33 6 6 99 444 6 55555 00000000000000 4 3 77777 0 00 00000
consensus : TGAAAAT---TTTG-C----------TCGCTGA-----GCT--------AA---CTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTG-CACCGGAGAAGACACGAGTGTTTCC-TGAG-TCC-ACCGTACCTTCAATA-CATGTCATT-C--CGAAGA---ATTATTC-CGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA-AAGAT-G-AATACGTA-----AACAGA---CA---TCATTACCACAG-CACCAACACGCAG---GTGGTTCT--AA---C-TA-CACAA--TCCT--C--GATGTTG-GAAACAAAAT-GACC-GAG-TTCC--ACGCATGA-CGCC-AGG-A--TCC-GCACACTGAAAGTGG-T----CTA--GGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCACA-CGCAC--TTGCT-AGGAGATT--AGTGGG-TATCC--TTCA--AAAGGATGGTT-GTCAGACAAACTACAAACAG-GTG-A----------G-AGTT-ATCATT-TTTCC--GC-GA---TACAAC-TTTC-ATAGC--CTACTTTCTCTTTGATTCGTAAAGCG----CCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGGCATTTTATTTTTTTTTTT--TTTAT-------NAAT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTNAACTGCATAATTTT-CTTTTAATC-ATATATGTTTCCAGCACCAG-ACTG-NC-ATGTACTG-TA--AA-GGGTCTATATAACT----ATAATCATTTTATA-AATAAGTATTACTCCA-GNTGCTTGGGTTCAGAACCC-ACCC-A------CCC-C---CTCCAA---TAAC-A-T--AC-A--ACAA-T--A-----TTTAT---TTT--G---G----TT--G-AAAA-TNTC-TCNAA-NAG-ATG-TC-AACAAT-GT-CT-T-GCA---TA-CC---C-AAAAAGTCCAA----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTNTTTTTTTGGG
Reference ( gi|5 ) : TGAAAAT---TTTG-C----------TAACTGA-----G-T--------AA---CTTG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTG-CACTGGAGAAGACATGAGTGTTTCCATGAG-TCC-ACCGTACCTTCAATA-CATATCATT-C--CGAAGA---ATTATTC-CGAG--ATTCA--TTAAGTTC-CAACACAAAGTGAATATGACAAGAT-G-GATACGTA-----AACAGA---CA---TCATTACCACAG-CACCAACACGCAG---GTGGT-CT--AA---C-TA-CACAA--TCCT--C--AATGTTG-GAAACAAAAT-GACC-GAG-TTCC--ACGCATGA-CGCC-AGG-A--TCC-GCACA-TGAAGGTGG-T----CTA--GGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCACA-CGCAC--TTGCT-AGGAGAT---AGTGGG-TATCC--TTCA--AAAGGATGGTT-GTCAGACAAATTACAA-CAG-GTG-A----------G-AGTT-ATCATT-TTTCC--GC-G----TACAGC-TTTC-ATAGC--CTACTTTCTCTTTGAT-CGTAAAGC-----CCCTCTTCACTCCAGTAA-AGTGGC-GGATCAAAACTGGCA-TTTATTTTTTTTTTT--TTT---------CAAT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAAATGCATAATTTT-CTTTTAATC-ATATATGTTTCCAACACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAACT----ATAATC----TATA-AATAAGTGTTACTCCA-GCTGCTTCGGTACAGGACCC-ACCC-A------CCC-C---TTCCAA---TAAC-A-T--AC-GGTACAA-T--A-----TTTAT---TTT--G---G----TT--G-AAAA-TCTC-TCCAA-AAG-ATG-TT-AACAAA-GT-CT-T-ACA---TA-CC---CAAAAAAGTCCAA----------CTGAAATAA-TCA-----AATCCAG-AGAGGCAGGGGGTTTTTTTGGGA
gi|4 : TGAAAATGGTTTTG-C----------TCACCGATACTGGCT--------AT---CTCGCAC--GTATTTGTTGCC-CTGC-AAGATACACTGTGACAC-GGAGAAGACACG-GTGTTTCC-TGAG-TCCCACCTCACCTTCGATA-CAT-TCATT-CGACGGGAG---ATTATTCGCG-G--ATT-A--TTAAATTCGCAACACAAAGTGA---TGA--AGAT-GCAATACGTA-----GAAAGATTACAATCTCATTACCACGC-TACC----CGCAATGTGCGTT-CTTAAA---C-TAACACAACTTCCTAGCGGAATGT-G-GAAACAAAATAGACCAGAGGTTCCTTACGCATGA-CGCCCATA-G--TCCCGCTCACTGGAAGTGGGT----GTA--TCACT-ACTGTT--GACA--CTTATCTGAAGGTTACCCGTTCACAACGC-CGATTA---AGGAGGTT--AGTGGG-TATTCCGTTCACAAAAGGAGGGT--GTCAGACAAACTACAAACAGAGTG-A----------G-AGTTTATCATTGTTTCC--GCAG----CAC--C-TTTCCATAGC--C-ACTTTCT-TCTAATGCGTAAAGC-----CA-TCTATACTCAGATAA-TACCAC-GGATCCAAACTGGCC-ATTATTATTTATTTT--TT-----------AAT-ATT-CAAATACCAATATATGATTATACATGAAGATATTATTCTCACTGC-TAATTGTACTTTT-ATCAATAT-TGTTTCC-ACACCAGCGCTGAAC-ATGTACTGATATTAA-GGGTCTA-AGAACTTTTAATCATT----GATATAATAA
gi|2 : gttaaagatagatctaataaggatttcaagaatgtgtgctaccaaacagagtagacagagcgttttagagaagaaggactattagcctcagatacgagttatgctaaactttggcatgtttggatttggcggtattgttttcattggaacagtttgatgaatcatttgtccaatagtgcacgagagaatacgtgataaaggtccccctGAAAAT---TTTGTC----------TAGCTGA-----GCT--------AA---CTCG-AC--GCATTTGTTGCCACTGC-AAG-TACACTGTG-C---GGAGAAG-CACG-GTGTTTCC-TGAGGTCC-ACCGTACCTTCAATA-CATGTCATT-C--CGA-GA---TTTATTT-CGCG--ATTCA--TTAAATTC-CAACA-AAAGTG--T-TGA---GATTG-AATAC-TA-----AACAGA---CA---TCATTAC-ACAA-CAC-AA-ACGCAG---GTGGTTCT--AA---C-TA-CACAA--TC-T--C--GAT--TGTGAAACAAAAT-GACC-GAG-TTCC--ACGCAGGA-CGCC-AGG-AGATCC-GC-CACTGAAG-TGG-T----CTA--GGCCT-ACTGTTTTGA-A--C--A---GAAGGTTCCCT-TTCACA-CGCAC--TTGCTTAGGAG-T---AGTGGG-TATCC--TTCT--AAAAGATGGTT-GTCAGACAAAT-ACAAACAG-GTGGA----------G-AGTT-ATCATT-TTTC---GC-GATGCTACA---TTTC-ATAGC--CTACTTTTTCTT-GATTCGTAAAGC-----GCCCTTTTACTC-AGTAA--GTGGC-GGATCCAA-CTGGGA-TTTATTTTTTTTTTT--------------AAATCATTTCA--TACCATTAA----T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATC-ATATATGTTTCCAGCACCAG-ACTG-CC-ATGTACTG-TA--AA-GGGTCTATATAACT----ATAATCATTTTATA-Atgaaaggaagaggcagatagaataagctggcacttacaaagtgtta
gi|3 : ggattcataagatatttaagttatgcttaagtacaagaatttacttaagtcataaaaaaatacttaagtaacgctagaatgtgttttttctttaagttttattcataaagcaacttatttttcagaaaattcttaaatggttctttactttagtgtggtcaatatcagtcttaaagttgttagaaaaacttaagtaaggatcaaaaatgtgccaacagagtacacagacttagatgacttatttgtgacagtgatgtaaacttgtcatttggattgcggttttatttcgatgaatttggactggacatcaattttgtatagtttcacagagaatcacgataatcccacttcaGAAAAT---TTTG-CATCCACTGAGTAACTGA-----GCT--------AAATACTCG-ACCGA-ATTTGTTGCCACTGCAAAGATACACTTGG-CACCG-AGAAGACACGAGTGTTTCC-TGAG-TCC-ACCGTAC-TTCAATAACATGTCATTAC--CGAAGACGAATTATTT-CGCGGAATTCAATTTAAATTC-CAAC-CAAAGTGA---TG-TAAGA--G-AATACGTA-----AACAGA---CA---TCATTAC-ACAAACACCAACACGCAG---GTGGTTCT--AA---CCTA-CACAA--TCCT--C--GATGT-G-GAAACAAAA--GACC-GA--TTCC--ACGCATGAACGCC-AGG-A--TCC-GCAC--TGAAAGTGG-TTAGCCTACAGGCCT-ACTGTTT-GA-AACC--AAC-GAAGGTTCCCTGTTCACA-CGCAC--TTGCT-AGGAGATTAAAGTGGGGTATTC--CTTA--AAAGGATGGTT-GTCAACCAAACTACAA-CAA-GTG-A----------ATAGTTGATCATT-TT-CC--GC-G----CACAAC-TTTC-ATAGC--CTACTTTCTCTTTGAT-CGTAAAGCGAGAGCCCTCTACACTCAAGT-A-AGTGGC-GGATACAAACTGGCATTTTATTTATTTTTTT--TTT---------AAAT-ATT-CAAATACCAATATGT--T--TACATG-----ttgaaaggggagggggcaataaataatataagctggaacttacaagtgtt
gi|7 : ccgggattcataaaagatctttaagttatgcttaagtacaagaatttacttatatcaaataaaaaaatattaagtaacgctaagaatgtgtttttttcttaagtttttattcataaagcaacttattttctccagaaaaattcttaaatggttcttaaacttaagtgtggtcaatagtaatcttaagttgttaagaagaaacttaaagtaaggattcaaatggctgccaacagagtacagacagacgtgcttttttagagagaggaaggggctattaggctcagtacagtgatgtaaactgtgcatttggatttgccggtattattttcattaaaagtttgacatggacatcaatttgtgaatagttcacagagaaatcacggtataatccaacttcaGAAAAT---TTTG-C----------TCACTGA-----G-TTAGTGAGTAA---CTCG-AC--G-ATTTTTTGCCACTGCTAAGATACACTGTG-CACTGGAGAAGACACGAGTGTTTCCACGAG-TCC-ACCGTACCTTCAATA-CATGTCATT-C--CGAAGA---ATTATTC-CGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATG--AAGAT-G-AATACGTAAACTTAACAGA---CA---TCATTACCACAG-CACCAACACGCAG---GTGGT-CT--AAGTTC-TA-CACAA--TCAT--C--GATG-TG-GAAACAAAAT-GACC-GAG-TTCC--A
gi|1 : ggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtgacgctaagaatgtgttgtttcttaagttctattcataaagccacttatttcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatagctgccaactgatgtacacagacgacgttttacagagagaagggactatttagctcagtacagtgatgtaaacttgtacatttggatttgaccggtatttatttcattgaaagtttgattgacatcaatttgtcagtagttcacagagaaaacacgcataatccccacttcaGAAAAT---TTTG-C----------TCGCTGA-----G-T--------AA---CTCG-AC--G-ATTTGTTGCCACTGCTAA------CTGTG-TACTGGAGAAGACACGAGTGTTTCCCTGGG-TCC-ACCGTACCTTCAATA-CATGTCATT-C--CGAAGA---ATTATTC-CGCG--ATTCA--TTAAATTC-CAACAGAAAGTGAATATG--AAGAT-G-AATACATA-----AACAGA---CA---TCATTACCACCG-CACCAACACGCAG---GTGGT-CT--AA---C-TA-CACAA--
gi|6 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcaC--ACGCATGA-CGCC-AGGGA--TCC-GCACT-TGAAAGTGG-T----CTA--GGCCTTCCTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCACA-CGCAC--TTG-T-AGC-GAT---AGTGGG-TATCC--T-CA--AAAAGATGGTTTGTCAGACAAATTACA--CAG--TGCA----------G-AGTT-ATCATT-TT-CC--GC-G----TACAAC-TTTC-ATAGC--CTACTTTCTCTTTGAT-CGTAAAGCG----CCCTCTACAC-CCAGTAA-AGTGGCGGGATCCAAACTGGCATTTTATATTTTTTTTT--TTTATGTATCAGCAAT-ATT-CAAATACCAGTATGT--T--TACATT-----ACTTTTTAAACTGCAT-ATTTT-CTTTTAATC-ATATAT-TTTCCAGCACCAG-ACTG-ACAATGTATTG-T----A-GGGT-------------------C----TATA-AATAAGTATTACTCCATGCAGCTATAGTACAGAACCC-ACCC-A------CCC-C----TCCAA---TAAC-A-T--AC-A----AA-T--A-----TTTAT---TTT--G---G----TT--GAAAAA-TCTC-TCCAA-AAG-ATG-TT-AAC-AT-GT-C--T-AC----TA-CC---C-AAAAAGTCCAA----------CTGAAATAA-TTA-----AATCCAG-AGA-GCA-GGTTTTTTTTTGGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaggatggttgtcagacaaagtacaacaggtaatacaggtgaagagttatcatttttcctcgcgatacaacctttcattgctactattctttctttgattcgtaaagcgccctctacactcagtaatagggcggatccaaactggcattttttttttttttaatgtatcagcaatattcaaataccaatatgtttacatgattttttaaactgcataattttcttttaatcatatatgtttccagcaccagatgccattgatgtaaaggggtctatataacttaatcattttataattgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|1 : --AAAGGATGGTT-GTCAGACAAAGTACAA-CAG-GTA-ATACAGGTGAAG-AGTT-ATCATT-TTTCCTCGC-GA---TACAACCTTTC-ATTGCTACTATTCTTTCTTTGATTCGTAAAGCG----CCCTCTACACTC-AGTAATAG-GGC-GGATCCAAACTGGCA-TTT-TTTTTTTTTTTAATGTATCAG----CAAT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTAAACTGCATAATTTT-CTTTTAATC-ATATATGTTTCCAGCACCAG-A-TG-CC-AT-TGATG-TA--AAGGGGTCTATATAACT-----TAATCATTTTATA-Aggggtttaaagggctttttcttatttaattgggaatttttgggcatgcaggcattgctagcatctgttagagaggtttcaatcgaaaaatgaatcaattgttgtagtattaattttttaaggggtctgttgagtgtctctaaacccgagcaa
gi|9 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcagaaaattttgctcgctgagtaactcgacgatttgttgccactgctaactgtgtactggagaagacacgagtgtttccctgggtccaccgtaccttcaatacatgtcattccgaagaattattccgcgattcattaaattccaacagaaagtgaatatgaagatgaatacataaacagacatcattaccaccgcaccaacacgcaggtggtctaactacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCTCCA-GCTGCTT-GGTACAGA--CC-ACCC-C------CCC-C---CTCCA----TAAA-A----GC-A-TACAA-T--A-----TTTAT---TT----------------A-AAAA-TATG-T-------A-AT--TT-AACAAATGTTCTGT-ACC---AA-CCTCCCCAAAAAGTCC-A----------CTAAAATAA-ATT-----AATCCAGCAGAAGCAGGGTTTATTTTTGGGttgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|8 : CA-GGTGCTTGGGTTTAGCCCCCCACCCCA------CCC-C---CGCATA---TAGC-C-TTGAT-AGAACAA-TG-A-----TTT-T---TTT--AAACG----TT--G-AAAA-TATC-TCAAA-TAC-ATG-TC-AATAAT-GT-CT-T-GCA---TA-CC---CA-AAAAGTCCA--------------AAATAA-TTA-----Agagggggatataagggctgtttccactcagatcgtatttgactttttgagtaccatgcaatgcattgttagtcatcctattagaagaggttttcaaaactcaaaaatatgaattatttttgtg
gi|8 : caggttcttggctttaggaccccccccccccccgccccaattgctttgctagaacaattatttctttcttccgttgaacatatctcaaatacatgtcaataatgtcttgcataccccaaaacaacccaatataagcccttttaaaaaattaccctcaatgtcgagagagggcatttttttaaaaagttttttaCA-GGTTCTTGGCTTTAGGACCC-CCCC-C------CCC-CCCGCCCCAA---TTGCTT-T--GCTAGAACAATT--A-----TTTCTTTCTTC--C---G----TT--G-AACA-TATC-TCAAA-TAC-ATG-TC-AATAAT-GT-CT-T-GCA---TACCC---CAAAACAACCCAATATAAGCCCTTTTAAAAAA-TTACCCTCAATGTCG-AGAG--AGGGCATTTTTTTtgctccatgctcggttattatcatcagct
gi|10 : TGCTTGGTTTGAGGAC---ACCC-AACAGATCCC-C---CTTTAA---AAAA-A-A--AG-TCTACAA-T--AATTAATTCAT---TTCTCG---G----CT--G-AAAA-CCTC-TCTAA-TAG-ATG-TC-AACAAT-GT-CT-T-GCA---TG-CC---C-AAAAAGTTCA--------------AAATAA-aaaaagttttttattaattattttggactttttgggtatgcaagacattattgacatgtatttgagatattttcaacgtttaaaaaaatcattgttctatcaaggctatatgcgggggtggggtggggggctaaacccaagcacctgtgctccatgctcggttattatcatcagct
gi|15 : aataacatacaatatttattttggttgaaaatctcctcaaaagatgttaacaatgtcttgcataccccaaaaagtccagccaaaataattaaatccagagaggcagttttttttcttttgttttatcttacTGCTAGGGTTCAGAACCC---CC-A------CCCTC---CGCCAA---TAGC-T-T--A--------A----A-----CTTAT---TTT--G---C----TTTTG-AAAA-TATC-TCatg
gi|6 : gacatgtatttataa-A------CCC-C---TTAAAAAATTAAT-ACT--AC-A--ACAA-TTGA-----TTCAT---TTTTCG---A----TT--G-AAA--CCTC-TCTAA-CAG-ATG-CT-AGCAAT-GC-CT---GCA---TG-CC---CAAAAATTCCCAA----------TT-AAATAA-catgtgggtgccggtgtattcttcaggtg
gi|10 : cacgcatgacgccagggatccgcacttgaaagtggtctaggccttcctgtttgaacaacgaaggttccctgttcacacgcacttgtagcgatagtgggtatcctcaaaaagatggtttgtcagacaaattacacagtgcagagttatcattttccgcgtacaactttcatagcctactttctctttgatcgtaaagcgccctctacacccagtaaagtggcgggatccaaactggcattttatattttttttttttatgtatcagcaatattcaaataccagtatgtttacattactttttaaactgcatattttcttttaatcatatattttccagcaccagactgacaatgtattgtagggtctataaataagtattactccatgcagctatagtacagaacccacccacccctccaataacatacaaatatttattttggttgaaaaatctctccaaaagatgttaacatgtctactacccaaaaagtccaactgaaataattaaatccagagagcaggtttttttttgggggggtttaaagggctttttcAA---TAAC-A-T--AC------AA-T--A-----TTTAT---TTT--G---G----TT--G-AAAA-TCTC-CTCAA-AAG-ATG-TT-AACAAT-GT-CT-T-GCA---TA-CC---CCAAAAAGTCCAG----------CCAAAATAA-TTA-----AATCCAG-AGAGGCA----GTTTTTTTctgttgagtgtctctaaacccgagcaa
gi|14 : AA-A--A-----CTTAT---TTT--GTT-A----TT--G-AAAA-TATCCTCTAA-TAA-ATG-TCCAACAAT-GT-CT-TTGCA---TA-CC---TAAA-AAGTCTAA----------CTtcttttgttttatcttacttattttgaactttttgggcatgcaagacattgttgacatctattagagaggttttcagccgagaaatgaattaattattgtagactttttttttaaagggggatctgttgggtgtcctcaaaccaagcaatg
gi|11 : -----TTTTT---TTT--AC--G----TT--G-AAAAATATC-TCAAA-TAC-ATT-TC-AATAAT-GT-CT-T-GCA---TG-CG---ACACAAAGTCCA--------------AAATAACTCA-----AATtaaaagatgttcttaggccatatttcgagcgtggagcggggc
gi|9 : cacaagtgcttggtttagaagaacacccccccaacggcctttggtccaaacacatcaattaattatatattttTAT---TTT--T---GAGTTTT--G-AAAA-CCTCTTCTAATAGG-ATGACT-AACAAT-GC-AT-T-GCATGGTA-CT---C-AAAAAGTCAAA----------aaatacacctctcctcgacattcaatatataatgtatacaatcataaacgtcgagagggcattt
gi|18 : ctccagctgcttggtacagaccaccccccccctccataaaagcatacaatatttatttaaaaatatgtaatttaacaaatgttctgtaccaacctccccaaaaagtccactaaaataaattaatccagcagaagcagggtttatttttggggagggggatataagggctgtttccactcagatcgtaT--A-AAAA-TCTA-T-CAA-ATGTATG-TC-AACAAT-AT-CT-T-GCA---TA-CC---C-CAAAAGTC-------------CT-AAATAA-Ttgaattatttttgtg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CGGTGAACCATATCTCTGATGTCAACAATATTTTGCATTTACTCCAACCAGTTCAAAATAACTCCGAAAAACCCTTTTTAAAATCGCCTAACACTAGGACATTTTTGTTATAAAAAATGCACAGTTTGAATTTATTCTGGAACTTTAATTTTATGTGTATTTGTGAAACATTTTTGACGTGATTAGAGCACTAGATTTTCAACCAGAAAAATGAT
Unaligned ( gi|13 ): TTGATCTTTAAGTTTTATTCAGAAAACAACTTAATTCTTAGAAAATTCTTAAACATAAGAGTGCTCTGTGGTTCAATTAAGTCAAGTTTTAAGAATTTCTTAAGTTTCCATGTAAAATGGCCGTCATTGTAATTCACAGAAGGAATTTCAGAGAAAGAACAGACTATTTACAACAGTACAATAA
Unaligned ( gi|16 ): TTCATAAAAGAACGTGATTATTAGAAAATTCTTAAACAGTTCTTAAAGATAAGAGCACTCAGTCGCAGTCCTAAGTTTTAAGAATTTCTTAAGTTCTGAAGTAAAAT
Unaligned ( gi|17 ): TAGACCTCTCCCCGATTCATCCAGTCTCTGATGATGTAAAAATCACAAACTTTGAGACGGCATTT
Alignments
lowQualScore : 111 2222222222 11111 3333333 1111 1 2 1111 11 22 11111 111 111 111 11 11 22 1111 1 1111 11 11111 11 111 22222 111111 222222222 1 1 1 1 1111 11 11 444444444444444444 11111 111 111 1111 111111111 111111111 1111 333333333333333333333333333333333 3333333333333 111111 333333333333333 11111 1
lowQualScore : 111 6 6 7777777777 66666 9 3333333 6 5555 1 3 1 88 7 0 6 6 6 1 6 99 3333 3 99 99 6 2 88 66 6 6 1 66666 111 111 6 2 6 6 7 99 888 6 99 5 11 11 8 11 88 8 8 99 8 8 3333 8 0 44 3 8 7777 11 8 0 8 8 22222 999 8 0 11 333 8 11111 8 666666 6 7 777777777 6 3 6 6 6 6 6 99 8 3 3 6 99 1 4444 3 33 00 1 6 6 6 7 999999999999999999 6 6 1 99999 66666 1 0 0 8 0 0 8 3 8 99 8 8 111 8 0 5 0 444 7777 8 5 1 6 888888888 4 666666666 66 4 7777 8888 000000000000000000000000000000000 3 44 2 7777777777777 2 2 1 5555 2 2 77777 7777 5 2 2 33 222222 66666 5 2 2 3 888888888888888 3 22222 8 3 0 1
lowQualScore : ... . . .......... ..... . ....... . .... . . . .. . . . . . . . .. .... . .. .. . . .. .. . . . ..... ... ... . . . . . .. ... . .. . .. .. . .. .. . . .. . . .... . . .. . . .... .. . . . . ..... ... . . .. ... . ..... . ...... . . ......... . . . . . . . .. . . . . .. . .... . .. .. . . . . . .................. . . . ..... ..... . . . . . . . . . .. . . ... . . . . ... .... . . . . ......... . ......... .. . .... .... ................................. . .. . ............. . . . .... . . ..... .... . . . .. ...... ..... . . . . ............... . ..... . . . .
lowQualScore : 777 7 7 3333333333 77777 3 3333333 7 2222 7 2 0 88 3 0 7 7 7 0 7 22 3333 7 22 22 7 5 55 55 7 7 0 77777 777 777 7 5 7 7 3 22 333 7 22 0 00 00 0 22 88 0 0 22 0 0 0000 0 8 00 8 0 0000 00 0 8 0 0 00000 000 0 8 00 888 0 00000 0 888888 7 8 333333333 7 3 7 7 7 7 7 22 0 5 3 7 22 3 2222 5 00 22 7 7 7 7 3 222222222222222222 7 7 0 33333 77777 0 8 8 0 8 8 0 2 0 00 0 0 888 0 8 6 6 666 2222 0 7 0 7 000000000 4 333333333 11 4 2222 5555 555555555555555555555555555555555 1 22 4 2222222222222 9 7 0 7777 7 7 66666 5555 3 9 9 99 111111 66666 7 9 9 1 333333333333333 6 55555 0 2 0 0
consensus : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATG--AAGAT-G-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCGATACAAC-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCA-GGTGCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
Reference ( family-1185 ) : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA-AAGAT-G-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCGATACAAC-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------NA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTNAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-NC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTATTACTCCA-GNTGCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TNT----C-T-C----NAANAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTNTTTTTTTGGG
gi|1 : GAAAAT---TTTG-C-TC---------GCTGA-----G-TA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAA------CTGTGTAC-TGGAGAAGACACGAGTGTTTCCCTGGG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACAGAAAGTGAATATG--AAGAT-G-AATACATA-----AACAG---ACA---TCATTACCAC-CGCACCAACACGCAG-GTG-G-TCT--AA---CT-ACACAA--
gi|1 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcaAAAGGATGGTT-GTCAGACAAAGTACAACAGGTAATACAG-GTG-AAG-AG-TT-ATCATT-TTTCCTCGCGATACAACCTTT-CATTGCTACTATTCTTTCTTTGATTCGTAAAGC----GCCCTCTACACTCA-GTAATAG-GGC-GGATCCAAACTGG-CATT-TTTTTTTTTTTTAATGTAT-------CAGCAAT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTAAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-A-TG-CC-AT-TGATG-TA--AAGGGGTCTATATAAC-T-TAATCATTTTATA-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaggatggttgtcagacaaagtacaacaggtaatacaggtgaagagttatcatttttcctcgcgatacaacctttcattgctactattctttctttgattcgtaaagcgccctctacactcagtaatagggcggatccaaactggcattttttttttttttaatgtatcagcaatattcaaataccaatatgtttacatgattttttaaactgcataattttcttttaatcatatatgtttccagcaccagatgccattgatgtaaaggggtctatataacttaatcattttataattgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcagaaaattttgctcgctgagtaactcgacgatttgttgccactgctaactgtgtactggagaagacacgagtgtttccctgggtccaccgtaccttcaatacatgtcattccgaagaattattccgcgattcattaaattccaacagaaagtgaatatgaagatgaatacataaacagacatcattaccaccgcaccaacacgcaggtggtctaactacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA----TAA---C----A-----TACA--A---------T--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-C-T----CAAAAG-ATGTT-AACAA-TGTCTT-GC--A------T---ACC-CC-AAAA-AGTCC-AG-----------CCAAAATAA-TTA-----AATCCAG-AGAGGCA--GTTTTTTTTttgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : TGCTTGGTTTGAGG---A-----C---ACCC-AACAGATCC--C-CCT----TTAA----AAA---A----AAAGTCTACA--AT-----A-ATTAA-TT--CATTTCTCG-----G----CTG-AAAA-CCT----C-T-C----TAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---G-C-CC-AAAA-AGTTC-A---------------AAATAA-GTA-----Acttttgttttatcttacttattttgaactttttgggcatgcaagacattgttgacatctattagagaggttttcagccgagaaatgaattaattattgtagactttttttttaaagggggatctgttgggtgtcctcaaaccaagcaatg
gi|11 : aataacatacaatatttattttggttgaaaatctcctcaaaagatgttaacaatgtcttgcataccccaaaaagtccagccaaaataattaaatccagagaggcagttttttttcttttgttttatcCA-AGTGCTTGG-TTTAGA---AGAACACCC-CCCC-A------ACGGC-CTTTGGTCCAA----ACA---C----A-----T-CA--ATTAATTATAT--A-TT--TTTTTT--TTTTACG----TTG-AAAAATAT----C-T-C----AAATAC-ATTTC-AATAA-TGTCTT-GC--A------T---G-CGAC-ACAA-AGTCC-A---------------AAATAACTCA-----AATatg
gi|12 : caA-TAT----C-T-C----T----G-ATGTC-AACAA-TATTTT-GC--ATT----T---A-CTCC-AACC-AGTTC-A---------------AAATAA-CTaaatacacctctcctcgacattcaatatataatgtatacaatcataaacgtcgagagggcattt
gi|12 : cggtgaacc--A-TT--T-TTCT--G-----G----TTG-AAAA-TCTAGTGC-T-C----TAAT-C-ACGTC-AAAAA-TGTTTC-ACAAA------T---A-C-AC-ATAA-AATccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaactttaattttatgtgtatttgtgaaacatttttgacgtgattagagcactagattttcaaccagaaaaatgat
gi|14 : cggtgaaccatatctctgatgtcaacaatattttgcatttactccaaccagttcaaaataactccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaacttta-----A-AA--A-CT--TATTTT--GTT---A----TTG-AAAA-TAT----CCT-C----TAATAA-ATGTCCAACAA-TGTCTTTGC--A------T---A-C-CT-AAAA-AGTCT-AA-----------CT-gat
gi|15 : CA-TGTGCTAGGGTTCAGA---A-----CC---CCC-A------CC--CTCCG----CCAA----TAG---C----T-----TA-A--AC--------------T--TATTTT--GCT---T----TTG-AAAA-TAT----C-T-CTTATAAATAC-ATGTC-taaaagatgttcttaggccatatttcgagcgtggagcggggc
gi|18 : TA-AAAA-TCT----A-T-C----AAATGT-ATGTC-AACAA-TATCTT-GC--A------T---A-C-CC-CAAA-AGTC---------------CT-AAATAA-Ttgggtgccggtgtattcttcaggtg
gi|2 : gGAAAAT---TTTGTC-TA---------GCTGA-----GCTA-------ACTCG-AC--GCATTTGTTGCCACTGC-AAG-TACACTGTGC----GGAGAAG-CACG-GTGTTTCC-TGAGGT-CCACCGTACCTTCAAT-ACATGTCATT-C--CGA----GATTTATTTCGCG--ATTCA--TTAAATTC-CAACA-AAAGTG--T-TGA---GATTG-AATAC-TA-----AACAG---ACA---TCATTAC-AC-AACAC-AA-ACGCAG-GTG-GTTCT--AA---CT-ACACAA--TC-T--CG--ATTGT--GAAACAAAAT-GACC-GA-GTTCC--ACGCAGG-ACG-CCAGG-AGAT-CCGC-CACTGAA-GT-GGT----CT--AGGCCT-ACTGTTTTGA-A--C--A---GAAGGTTCCCT-TTCAC-ACGCAC--TTGCTTAG-GAG--T--AGT-GGGTATCC--TT--CTAAAAGATGGTT-GTCAGACAAA-TACAA--------ACAG-GTGGA-G-AG-TT-ATCATT-TTTC---GCGATGCTACATTT-CATAGC--CTACTTTTTCTT-GATTCGTAAAGC----GCCCTTT-TACTCA-GTAA--GTGGC-GGATCCAA-CTGG-GATT-T-ATTTTTTTTTTT------------AA---ATCATTTCA--TACCATTAA----T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-CC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-Aa
gi|3 : ggattcataagatatttaagttatgcttaagtacaagaatttacttaagtcataaaaaaatacttaagtaacgctagaatgtgttttttctttaagttttattcataaagcaacttatttttcagaaaattcttaaatggttctttactttagtgtggtcaatatcagtcttaaagttgttagaaaaacttaagtaaggatcaaaaatgtgccaacagagtacacagacttagatgacttatttgtgacagtgatgtaaacttgtcatttggattgcggttttatttcgatgaatttggactggacatcaattttgtatagtttcacagagaatcacgataatcccacttcaGAAAAT---TTTG-CATCCACTGAGTAACTGA-----GCTAAAT----ACTCG-ACCGA-ATTTGTTGCCACTGCAAAGATACACTTGGCAC-C-GAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTA-CTTCAATAACATGTCATTAC--CGAAGACGAATTATTTCGCGGAATTCAATTTAAATTC-CAAC-CAAAGTG---ATGT-AAGA--G-AATACGTA-----AACAG---ACA---TCATTA-CACAAACACCAACACGCAG-GTG-GTTCT--AAC--CT-ACACAA--TCCT--CG--AT-G-TGGAAACAAAA--GACC-GA--TTCC--ACGCATGAACG-CCAGG-A--T-CCG--CACTGAAAGT-GGTTAGCCTACAGGCCT-ACTGTTT-GA-AACC--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATTAAAGTGGGGTATTC--CT--TAAAAGGATGGTT-GTCAACCAAACTAC-A--------ACAA-GTG-A-ATAG-TTGATCA-T-TTTCC--GCG-CACAAC-TTT-CATAGC--CTACTTTCTCTTTGA-TCGTAAAGCGAGAGCCCTCTACACTCAAGT-A-AGTGGC-GGATACAAACTGG-CATT-TTATTTATTTTTTTTTTA---------A---AT-ATT-CAAATACCAATATGT--T--TACATG-----ttgaaaggggagggggcaataaataatataagctggaacttacaagtgtt
gi|4 : ccgggattcataaaagatctttaagttatgcttaagtacaagaatttacttatatcaaataaaaaaatattaagtaacgctaagaatgtgtttttttcttaagtttttattcataaagcaacttattttctccagaaaaattcttaaatggttcttaaacttaagtgtggtcaatagtaatcttaagttgttaagaagaaacttaaagtaaggattcaaatggctgccaacagagtacagacagacgtgcttttttagagagaggaaggggctattaggctcagtacagtgatgtaaactgtgcatttggatttgccggtattattttcattaaaagtttgacatggacatcaatttgtgaatagttcacagagaaatcacggtataatccaacttcaTGAAAATGGTTTTG-C-TC---------ACCGATACTGGCTA-------TCTCGCAC--GTATTTGTTGCC-CTGC-AAGATACACTGTG-ACACGGAGAAGACACG-GTGTTTCC-TGAG-TCCCACCTCACCTTCGAT-ACAT-TCATT-CGACGGG---AGATTATT-CGCG--GATTA--TTAAATTCGCAACACAAAGTG---ATG--AAGAT-GCAATACGTA-----GAAAGATTACAATCTCATTACCAC-GCTACC----CGCAATGTGCGTTCTTAAA---CTAACACAACTTCCTAGCGGAAT-G-TGGAAACAAAATAGACCAGAGGTTCCTTACGCATG-ACGCCCATA-G--TCCCGCTCACTGGAAGTGGGT----GT--ATCACT-ACTG-TT-GACA--CTTATCTGAAGGTTACCCGTTCACAACGC-CGATTA---AG-GAGGTT--AGT-GGGTATTCCGTTCACAAAAGGA-GGGT-GTCAGACAAACTACAA--------ACAGAGTG-A-G-AGTTT-ATCATTGTTTCC--GCAGCAC--C-TTTCCATAGC--C-ACTTTCT-TCTAATGCGTAAA------GCCATCTATACTCAGATAA-TACCAC-GGATCCAAACTGGCCATTATTATTTATTTTTT--------------A---AT-ATT-CAAATACCAATATATGATTATACATGAAGATATTATTCTCACTGC-TAATTGTACTTTT-ATCA-ATATTGTTTCCA-CACCAGCGCTGAAC-ATGTACTGATATTAA-GGGTCTA-AGAACTTTTAATCA-TTGATATAATAA
gi|5 : gttaaagatagatctaataaggatttcaagaatgtgtgctaccaaacagagtagacagagcgttttagagaagaaggactattagcctcagatacgagttatgctaaactttggcatgtttggatttggcggtattgttttcattggaacagtttgatgaatcatttgtccaatagtgcacgagagaatacgtgataaaggtccccctTGAAAAT---TTTG-C-TA---------ACTGA-----G-TA-------ACTTG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACATGAGTGTTTCCATGAG-T-CCACCGTACCTTCAAT-ACATATCATT-C--CGAA---GAATTATTCCGAG--ATTCA--TTAAGTTC-CAACACAAAGTGAATATGACAAGAT-G-GATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GT-CT--AA---CT-ACACAA--TCCT--CA--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACA-TGAAGGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGAT---AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAATTACAA---------CAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCG-TACAGC-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC-----CCCTCTTCACTCCAGTAA-AGTGGC-GGATCAAAACTGG-CATT-T-ATTTT--TTTTTTTTTT-------CA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAAATGCATAATTTT-CTTTTAATCATATA-TGTTTCCAACACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATC----TATA-AATAAGTGTTACTCCA-GCTGCTTCGGTACAGG---A-----CCC-ACCC-A------CC--C-CTT----CCAA----TAA---C----A-----TACGGTAC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----CAAAAG-ATGTT-AACAA-AGTCTT-AC--A------T---A-C-CCAAAAA-AGTCC-AA-----------CTGAAATAA-TCA-----AATCCAG-AGAGGCAGGGGGTTTTTTTGGGtgaaaggaagaggcagatagaataagctggcacttacaaagtgtta
gi|6 : C--ACGCATG-ACG-CCAGGGA--T-CCGCAC-TTGAAAGT-GGT----CT--AGGCCTTCCTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTG-T-AGCGA---T--AGT-GGGTATCC--T---CAAAAAGATGGTTTGTCAGACAAATTACA----------CAG--TGCA-G-AG-TT-ATCATT-TT-CC--GCG-TACAAC-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC----GCCCTCTACACCC-AGTAA-AGTGGCGGGATCCAAACTGG-CATT-TTATATTTTTTTTTTTTATGTATCAGCA---AT-ATT-CAAATACCAGTATGT--T--TACATT-----ACTTTTTAAACTGCAT-ATTTT-CTTTTAATCATATA-T-TTTCCAGCACCAG-ACTG-ACAATGTATTG-T----A-GGGTC--------------------TATA-AATAAGTATTACTCCATGCAGCTATAGTACAGA---A-----CCC-ACCC-A-------C--C-CCT----CCAA----TAA---C----A-----TACA---------A-AT--A-TT--TATTTT--G-----G----TTGAAAAA-TCT----C-T-C----CAAAAG-ATGTT-AAC-A-TGTC-T-AC---------T---A-C-CC-AAAA-AGTCC-AA-----------CTGAAATAA-TTA-----AATCCAG-AGA-GCA-GGTTTTTTTTTGGGa
gi|6 : TGCTCGGGTTTAGAGACA-----CTC-AACA-G------AC--C-CCT----TAAAAAATTAA---T----AC----TACA--AC-----A-ATTGA-TT--CATTTTTCG-----A----TTG-AAA--CCT----C-T-C----TAACAG-ATGCT-AGCAA-TGCCT--GC--A------T---G-C-CC-AAAA-ATTCCCAA-----------TT-AAATAA-ggggtttaaagggctttttcttatttaattgggaatttttgggcatgcaggcattgctagcatctgttagagaggtttcaatcgaaaaatgaatcaattgttgtagtattaattttttaaggggtctgttgagtgtctctaaacccgagcaa
gi|7 : cacgcatgacgccagggatccgcacttgaaagtggtctaggccttcctgtttgaacaacgaaggttccctgttcacacgcacttgtagcgatagtgggtatcctcaaaaagatggtttgtcagacaaattacacagtgcagagttatcattttccgcgtacaactttcatagcctactttctctttgatcgtaaagcgccctctacacccagtaaagtggcgggatccaaactggcattttatattttttttttttatgtatcagcaatattcaaataccagtatgtttacattactttttaaactgcatattttcttttaatcatatattttccagcaccagactgacaatgtattgtagggtctataaataagtattactccatgcagctatagtacagaacccacccacccctccaataacatacaaatatttattttggttgaaaaatctctccaaaagatgttaacatgtctactacccaaaaagtccaactgaaataattaaatccagagagcaggtttttttttgggggggtttaaagggctttttcGAAAAT---TTTG-C-TC---------ACTGA-----GTTAGTGAGTAACTCG-AC--G-ATTTTTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACACGAGTGTTTCCACGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATG--AAGAT-G-AATACGTAAACTTAACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-G-TCT--AAGTTCT-ACACAA--TCAT--CG--AT-G-TGGAAACAAAAT-GACC-GA-GTTCC--Aa
gi|8 : ggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtgacgctaagaatgtgttgtttcttaagttctattcataaagccacttatttcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatagctgccaactgatgtacacagacgacgttttacagagagaagggactatttagctcagtacagtgatgtaaacttgtacatttggatttgaccggtatttatttcattgaaagtttgattgacatcaatttgtcagtagttcacagagaaaacacgcataatccccacttcaCA-GGTTCTTGGCTTTAGG---A-----CCC-CCCC-C------CC--C-CCCGCC-CCAA----TTG---CTTTGC-----TAGA--AC-----A-ATT-A-TT--TCTTTC--TTCC--G----TTG-AACA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---ACC-CC-AAAACAACCC-AATATAAGCCCTTTT-AAAAAA-TTACCCTCAATGTCG-AGAG--AGGGCATTTTTTT
gi|8 : CA-GGTGCTTGGGTTTAGC---C-----CCCCACCCCA------CC--C-CCG----CATA----TAG---CCTTGA-----TAGA--AC-----A-ATG-A-TT--T-TTTT--AAAC--G----TTG-AAAA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-A---------------AAATAA-TTA-----Aaaaaagttttttattaattattttggactttttgggtatgcaagacattattgacatgtatttgagatattttcaacgtttaaaaaaatcattgttctatcaaggctatatgcgggggtggggtggggggctaaacccaagcacctgtgctccatgctcggttattatcatcagct
gi|9 : caggttcttggctttaggaccccccccccccccgccccaattgctttgctagaacaattatttctttcttccgttgaacatatctcaaatacatgtcaataatgtcttgcataccccaaaacaacccaatataagcccttttaaaaaattaccctcaatgtcgagagagggcatttttttaaaaagttttttaCTCCA-GCTGCTTGG-TACAGA----------CC-ACCC-C------CC--C-CCT----CCA-----TAAAAGC----A-----TACA--A---------T--A-TT--TATTT----------------A-AAAA-TAT----G-T-------AAT------TT-AACAAATGTTCT-GT--ACCAACCT---C-C-CC-AAAA-AGTCC--A-----------CTAAAATAA-ATT-----AATCCAGCAGAAGCAGGGTTTATTTTTGGGtgctccatgctcggttattatcatcagct
gi|9 : ACA--AA-----A-AT--AATTCATATTTT--T-----GAGTTTTG-AAAA-CCT----C-TTC----TAATAGGATGACTAACAA-TGCATT-GC--A------TGGTA-C-TC-AAAA-AGTCA-AA-----------gagggggatataagggctgtttccactcagatcgtatttgactttttgagtaccatgcaatgcattgttagtcatcctattagaagaggttttcaaaactcaaaaatatgaattatttttgtg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGATCTTTAAGTTTTATTCAGAAAACAACTTAATTCTTAGAAAATTCTTAAACATAAGAGTGCTCTGTGGTTCAATTAAGTCAAGTTTTAAGAATTTCTTAAGTTTCCATGTAAAATGGCCGTCATTGTAATTCACAGAAGGAATTTCAGAGAAAGAACAGACTATTTACAACAGTACAATAA
Unaligned ( gi|16 ): TTCATAAAAGAACGTGATTATTAGAAAATTCTTAAACAGTTCTTAAAGATAAGAGCACTCAGTCGCAGTCCTAAGTTTTAAGAATTTCTTAAGTTCTGAAGTAAAAT
Unaligned ( gi|17 ): TAGACCTCTCCCCGATTCATCCAGTCTCTGATGATGTAAAAATCACAAACTTTGAGACGGCATTT
Alignments
lowQualScore : 111 2222222222 11111 3333333 1111 1 2 1111 1 11111 111 111 111 11 11 22 1111 1 1111 11 11111 11 111 22222 111111 222222222 2 1 1 1111 11 11 4444444444444 11111 111 111 1111 111111111 111111111 1111 333333333333333333333333333333333 3333333333333 111111 333333333333333 11111 1
lowQualScore : 111 6 6 7777777777 66666 9 3333333 6 5555 1 3 1 88 7 0 6 6 6 1 6 99 3333 3 99 99 6 2 5 1 99 6 1 66666 111 111 6 2 6 6 7 99 888 6 99 5 11 11 8 11 88 8 8 99 8 8 3333 8 0 44 3 8 7777 11 8 0 8 8 22222 999 8 0 11 333 8 11111 8 666666 6 7 777777777 6 0 6 6 6 6 99 8 777 6 6 99 1 4444 3 33 00 1 6 6 6 7 5555555555555 1 99999 66666 1 0 0 8 0 0 8 3 8 88 8 8 111 8 0 5 0 444 7777 8 4 6 888888888 4 666666666 66 4 7777 8888 000000000000000000000000000000000 3 44 2 7777777777777 2 2 5555 2 8888888 555 5 2 2 33 222222 66666 5 2 2 3 888888888888888 3 22222 8 3 0 1
lowQualScore : ... . . .......... ..... . ....... . .... . . . .. . . . . . . . .. .... . .. .. . . . . .. . . ..... ... ... . . . . . .. ... . .. . .. .. . .. .. . . .. . . .... . . .. . . .... .. . . . . ..... ... . . .. ... . ..... . ...... . . ......... . . . . . . .. . ... . . .. . .... . .. .. . . . . . ............. . ..... ..... . . . . . . . . . .. . . ... . . . . ... .... . . . ......... . ......... .. . .... .... ................................. . .. . ............. . . .... . ....... ... . . . .. ...... ..... . . . . ............... . ..... . . . .
lowQualScore : 777 7 7 3333333333 77777 3 3333333 7 2222 7 2 0 88 3 0 7 7 7 0 7 22 3333 7 22 22 7 5 5 7 22 7 0 77777 777 777 7 5 7 7 3 22 333 7 22 0 00 00 0 22 88 0 0 22 0 0 0000 0 8 00 8 0 0000 00 0 8 0 0 00000 000 0 8 00 888 0 00000 0 888888 7 8 333333333 7 0 7 7 7 7 22 0 777 7 7 22 3 2222 5 00 22 7 7 7 7 3 2222222222222 0 33333 77777 4 8 8 0 8 8 0 2 0 66 0 0 888 0 8 6 6 666 2222 0 4 7 000000000 4 333333333 11 4 2222 5555 555555555555555555555555555555555 1 22 4 2222222222222 9 7 7777 7 9999999 555 3 9 9 99 111111 66666 7 9 9 1 333333333333333 6 55555 0 2 0 0
consensus : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
Reference ( family-1185 ) : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
gi|1 : GAAAAT---TTTG-C-TC---------GCTGA-----G-TA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAA------CTGTGTAC-TGGAGAAGACACGAGTGTTTCCCTGGG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACAGAAAGTGAATATGA--AGATG-AATACATA-----AACAG---ACA---TCATTACCAC-CGCACCAACACGCAG-GTG-G-TCT--AA---CT-ACACAA--
gi|1 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcaAAAGGATGGTT-GTCAGACAAAGTACAACAGGTAATACAG-GTGAAG-AG-TT-ATCATT-TTTCCTCGCGATACAACC-TTT-CATTGCTACTATTCTTTCTTTGATTCGTAAAGC----GCCCTCTACACTC-AGTAATAG-GGC-GGATCCAAACTGG-CATT-TTTTTTTTTTTTAATGTATCAG----CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTAAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-A-TG-CC-AT-TGATG-TA--AAGGGGTCTATATAAC-T-TAATCATTTTATA-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaggatggttgtcagacaaagtacaacaggtaatacaggtgaagagttatcatttttcctcgcgatacaacctttcattgctactattctttctttgattcgtaaagcgccctctacactcagtaatagggcggatccaaactggcattttttttttttttaatgtatcagcaatattcaaataccaatatgtttacatgattttttaaactgcataattttcttttaatcatatatgtttccagcaccagatgccattgatgtaaaggggtctatataacttaatcattttataattgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcagaaaattttgctcgctgagtaactcgacgatttgttgccactgctaactgtgtactggagaagacacgagtgtttccctgggtccaccgtaccttcaatacatgtcattccgaagaattattccgcgattcattaaattccaacagaaagtgaatatgaagatgaatacataaacagacatcattaccaccgcaccaacacgcaggtggtctaactacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA----TAA---C----A-----TACA--A---------T--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-C-T----CAAAAG-ATGTT-AACAA-TGTCTT-GC--A------T---ACC-CC-AAAA-AGTCC-AG-----------CCAAAATAA-TTA-----AATCCAG-AGAGGCA--GTTTTTTTTttgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : T-GCTTGGTTTGAGG---A-----C---ACCC-AACAGATCC--C-CCT----TTAA----AAA---A----AAAGTCTACA--AT-----A-ATTAA-TT--CATTTCTCG-----G----CTG-AAAA-CCT----C-T-C----TAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---G-C-CC-AAAA-AGTTC-A---------------AAATAA-GTA-----Acttttgttttatcttacttattttgaactttttgggcatgcaagacattgttgacatctattagagaggttttcagccgagaaatgaattaattattgtagactttttttttaaagggggatctgttgggtgtcctcaaaccaagcaatg
gi|11 : aataacatacaatatttattttggttgaaaatctcctcaaaagatgttaacaatgtcttgcataccccaaaaagtccagccaaaataattaaatccagagaggcagttttttttcttttgttttatcCAAGT-GCTTGG-TTTAGA---AGAACACCC-CCCC-A------ACGGC-CTTTGGTCCAA----ACA---C----A-----T-CA--ATTAATTATAT--A-TT--TTTTTT--TTTTACG----TTG-AAAAATAT----C-T-C----AAATAC-ATTTC-AATAA-TGTCTT-GC--A------T---G-CGAC-ACAA-AGTCC-A---------------AAATAACTCA-----AATatg
gi|12 : caA-TCT----C-T-----------G-ATGTC-AACAA-TATTTT-GC--ATT----T---A-CTCC-AACC-AGTTC-A---------------AAATAA-CTaaatacacctctcctcgacattcaatatataatgtatacaatcataaacgtcgagagggcattt
gi|12 : cggtgaaccat--A-TT--T-TTCT--G-----G----TTG-AAAA-TCTAGTGC-T-C----TAAT-C-ACGTC-AAAAA-TGTTTC-ACAAA------T---A-C-AC-ATAA-AATccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaactttaattttatgtgtatttgtgaaacatttttgacgtgattagagcactagattttcaaccagaaaaatgat
gi|14 : cggtgaaccatatctctgatgtcaacaatattttgcatttactccaaccagttcaaaataactccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaacttta-----A-AA--A-CT--TATTTT--GTT---A----TTG-AAAA-TAT----CCT-C----TAATAA-ATGTCCAACAA-TGTCTTTGC--A------T---A-C-CT-AAAA-AGTCT-AA-----------CT-gat
gi|15 : CATGT-GCTAGGGTTCAGA---A-----CC---CCC-A------CC--CTCCG----CCAA----TAG---C----T-----TA-A--AC--------------T--TATTTT--GCT---T----TTG-AAAA-TAT----C-T-CTTATAAATAC-ATGTC-taaaagatgttcttaggccatatttcgagcgtggagcggggc
gi|18 : TA-AAAA-TCT----A-T-C----AAATGT-ATGTC-AACAA-TATCTT-GC--A------T---A-C-CC-CAAA-AGTC---------------CT-AAATAA-Ttgggtgccggtgtattcttcaggtg
gi|2 : gGAAAAT---TTTGTC-TA---------GCTGA-----GCTA-------ACTCG-AC--GCATTTGTTGCCACTGC-AAG-TACACTGTGC----GGAGAAG-CACG-GTGTTTCC-TGAGGT-CCACCGTACCTTCAAT-ACATGTCATT-C--CGA----GATTTATTTCGCG--ATTCA--TTAAATTC-CAACA-AAAGTG--T-TGA--GATTG-AATAC-TA-----AACAG---ACA---TCATTAC-AC-AACAC-AA-ACGCAG-GTG-GTTCT--AA---CT-ACACAA--TC-T--CG--ATTGT--GAAACAAAAT-GACC-GA-GTTCC--ACGCAGG-ACG-CCAGG-AGAT-CCGC-CACTGAA-GT-GGT----CT--AGGCCT-ACTGTTTTGA-A--C--A---GAAGGTTCCCT-TTCAC-ACGCAC--TTGCTTAG-GAG--T--AGT-GGGTATCC--TT--CTAAAAGATGGTT-GTCAGACAAA-TACAA--------ACAG-GTGGAG-AG-TT-ATCATT-TTTC---GCGATGCTA-CATTT-CATAGC--CTACTTTTTCTT-GATTCGTAAAGC----GCCCTTT-TACTCA-GTAA--GTGGC-GGATCCAA-CTGG-GATT-T-ATTTTTTTTTTTAA-AT-------CA-T-TTCA--TACCATTAA----T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-CC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-Aa
gi|3 : ggattcataagatatttaagttatgcttaagtacaagaatttacttaagtcataaaaaaatacttaagtaacgctagaatgtgttttttctttaagttttattcataaagcaacttatttttcagaaaattcttaaatggttctttactttagtgtggtcaatatcagtcttaaagttgttagaaaaacttaagtaaggatcaaaaatgtgccaacagagtacacagacttagatgacttatttgtgacagtgatgtaaacttgtcatttggattgcggttttatttcgatgaatttggactggacatcaattttgtatagtttcacagagaatcacgataatcccacttcaGAAAAT---TTTG-CATCCACTGAGTAACTGA-----GCTAAAT----ACTCG-ACCGA-ATTTGTTGCCACTGCAAAGATACACTTGGCAC-C-GAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTA-CTTCAATAACATGTCATTAC--CGAAGACGAATTATTTCGCGGAATTCAATTTAAATTC-CAAC-CAAAGTG-ATGT-A--AGA-G-AATACGTA-----AACAG---ACA---TCATTA-CACAAACACCAACACGCAG-GTG-GTTCT--AAC--CT-ACACAA--TCCT--CG--AT-G-TGGAAACAAAA--GACC-GA--TTCC--ACGCATGAACG-CCAGG-A--T-CCG--CACTGAAAGT-GGTTAGCCTACAGGCCT-ACTGTTT-GA-AACC--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATTAAAGTGGGGTATTC--CT--TAAAAGGATGGTT-GTCAACCAAACTAC-A--------ACAA-GTG-AATAG-TTGATCA-T-TTTC--CGCG-CACAA-C-TTT-CATAGC--CTACTTTCTCTTTGA-TCGTAAAGCGAGAGCCCTCTACACTCAAGT-A-AGTGGC-GGATACAAACTGG-CATT-TTATTTATTTTTTTTTTA---------AATATTCAAATACCAATATGT--T--TACATG-----ttgaaaggggagggggcaataaataatataagctggaacttacaagtgtt
gi|4 : ccgggattcataaaagatctttaagttatgcttaagtacaagaatttacttatatcaaataaaaaaatattaagtaacgctaagaatgtgtttttttcttaagtttttattcataaagcaacttattttctccagaaaaattcttaaatggttcttaaacttaagtgtggtcaatagtaatcttaagttgttaagaagaaacttaaagtaaggattcaaatggctgccaacagagtacagacagacgtgcttttttagagagaggaaggggctattaggctcagtacagtgatgtaaactgtgcatttggatttgccggtattattttcattaaaagtttgacatggacatcaatttgtgaatagttcacagagaaatcacggtataatccaacttcaTGAAAATGGTTTTG-C-TC---------ACCGATACTGGCTA-------TCTCGCAC--GTATTTGTTGCC-CTGC-AAGATACACTGTG-ACACGGAGAAGACACG-GTGTTTCC-TGAG-TCCCACCTCACCTTCGAT-ACAT-TCATT-CGACGGG---AGATTATT-CGCG--GATTA--TTAAATTCGCAACACAAAGTG---ATGA--AGATGCAATACGTA-----GAAAGATTACAATCTCATTACCAC-GCTACC----CGCAATGTGCGTTCTTAAA---CTAACACAACTTCCTAGCGGAAT-G-TGGAAACAAAATAGACCAGAGGTTCCTTACGCATG-ACGCCCATA-G--TCCCGCTCACTGGAAGTGGGT----GT--ATCACT-ACTG-TT-GACA--CTTATCTGAAGGTTACCCGTTCACAACGC-CGATTA---AG-GAGGTT--AGT-GGGTATTCCGTTCACAAAAGGA-GGGT-GTCAGACAAACTACAA--------ACAGAGTG-AG-AGTTT-ATCATTGTTTC--CGCAGCAC---C-TTTCCATAGC--C-ACTTTCT-TCTAATGCGTAAA------GCCATCTATACTCAGATAA-TACCAC-GGATCCAAACTGGCCATTATTATTTATTTTTT--------------AATATTCAAATACCAATATATGATTATACATGAAGATATTATTCTCACTGC-TAATTGTACTTTT-ATCA-ATATTGTTTCCA-CACCAGCGCTGAAC-ATGTACTGATATTAA-GGGTCTA-AGAACTTTTAATCA-TTGATATAATAA
gi|5 : gttaaagatagatctaataaggatttcaagaatgtgtgctaccaaacagagtagacagagcgttttagagaagaaggactattagcctcagatacgagttatgctaaactttggcatgtttggatttggcggtattgttttcattggaacagtttgatgaatcatttgtccaatagtgcacgagagaatacgtgataaaggtccccctTGAAAAT---TTTG-C-TA---------ACTGA-----G-TA-------ACTTG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACATGAGTGTTTCCATGAG-T-CCACCGTACCTTCAAT-ACATATCATT-C--CGAA---GAATTATTCCGAG--ATTCA--TTAAGTTC-CAACACAAAGTGAATATGACAAGATG-GATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GT-CT--AA---CT-ACACAA--TCCT--CA--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACA-TGAAGGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGAT---AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAATTACAA---------CAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCG-TACAG-C-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC-----CCCTCTTCACTCCAGTAA-AGTGGC-GGATCAAAACTGG-CATT-T-ATTTT--TTTTTTTTTT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAAATGCATAATTTT-CTTTTAATCATATA-TGTTTCCAACACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATC----TATA-AATAAGTGTTACTCCAGCT-GCTTCGGTACAGG---A-----CCC-ACCC-A------CC--C-CTT----CCAA----TAA---C----A-----TACGGTAC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----CAAAAG-ATGTT-AACAA-AGTCTT-AC--A------T---A-C-CCAAAAA-AGTCC-AA-----------CTGAAATAA-TCA-----AATCCAG-AGAGGCAGGGGGTTTTTTTGGGtgaaaggaagaggcagatagaataagctggcacttacaaagtgtta
gi|6 : C--ACGCATG-ACG-CCAGGGA--T-CCGCAC-TTGAAAGT-GGT----CT--AGGCCTTCCTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTG-T-AGCGA---T--AGT-GGGTATCC--T---CAAAAAGATGGTTTGTCAGACAAATTACA----------CAG--TGCAG-AG-TT-ATCATT-TT-C--CGCG-TACAA-C-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC----GCCCTCTACACCC-AGTAA-AGTGGCGGGATCCAAACTGG-CATT-TTATATTTTTTTTTTTTATGTATCAGCAATATTCAAATACCAGTATGT--T--TACATT-----ACTTTTTAAACTGCAT-ATTTT-CTTTTAATCATATA-T-TTTCCAGCACCAG-ACTG-ACAATGTATTG-T----A-GGGTC--------------------TATA-AATAAGTATTACTCCATGCAGCTATAGTACAGA---A-----CCC-ACCC-A-------C--C-CCT----CCAA----TAA---C----A-----TACA---------A-AT--A-TT--TATTTT--G-----G----TTGAAAAA-TCT----C-T-C----CAAAAG-ATGTT-AAC-A-TGTC-T-AC---------T---A-C-CC-AAAA-AGTCC-AA-----------CTGAAATAA-TTA-----AATCCAG-AGA-GCA-GGTTTTTTTTTGGGa
gi|6 : T-GCTCGGGTTTAGAGACA-----CTC-AACA-G------AC--C-CCT----TAAAAAATTAA---T----AC----TACA--AC-----A-ATTGA-TT--CATTTTTCG-----A----TTG-AAA--CCT----C-T-C----TAACAG-ATGCT-AGCAA-TGCCT--GC--A------T---G-C-CC-AAAA-ATTCCCAA-----------TT-AAATAA-ggggtttaaagggctttttcttatttaattgggaatttttgggcatgcaggcattgctagcatctgttagagaggtttcaatcgaaaaatgaatcaattgttgtagtattaattttttaaggggtctgttgagtgtctctaaacccgagcaa
gi|7 : cacgcatgacgccagggatccgcacttgaaagtggtctaggccttcctgtttgaacaacgaaggttccctgttcacacgcacttgtagcgatagtgggtatcctcaaaaagatggtttgtcagacaaattacacagtgcagagttatcattttccgcgtacaactttcatagcctactttctctttgatcgtaaagcgccctctacacccagtaaagtggcgggatccaaactggcattttatattttttttttttatgtatcagcaatattcaaataccagtatgtttacattactttttaaactgcatattttcttttaatcatatattttccagcaccagactgacaatgtattgtagggtctataaataagtattactccatgcagctatagtacagaacccacccacccctccaataacatacaaatatttattttggttgaaaaatctctccaaaagatgttaacatgtctactacccaaaaagtccaactgaaataattaaatccagagagcaggtttttttttgggggggtttaaagggctttttcGAAAAT---TTTG-C-TC---------ACTGA-----GTTAGTGAGTAACTCG-AC--G-ATTTTTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACACGAGTGTTTCCACGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTAAACTTAACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-G-TCT--AAGTTCT-ACACAA--TCAT--CG--AT-G-TGGAAACAAAAT-GACC-GA-GTTCC--Aa
gi|8 : ggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtgacgctaagaatgtgttgtttcttaagttctattcataaagccacttatttcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatagctgccaactgatgtacacagacgacgttttacagagagaagggactatttagctcagtacagtgatgtaaacttgtacatttggatttgaccggtatttatttcattgaaagtttgattgacatcaatttgtcagtagttcacagagaaaacacgcataatccccacttcaCAGGT-TCTTGGCTTTAGG---A-----CCC-CCCC-C------CC--C-CCCGCC-CCAA----TTG---CTTTGC-----TAGA--AC-----A-ATT-A-TT--TCTTTC--TTCC--G----TTG-AACA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---ACC-CC-AAAACAACCC-AATATAAGCCCTTTT-AAAAAA-TTACCCTCAATGTCG-AGAG--AGGGCATTTTTTT
gi|8 : CAGGT-GCTTGGGTTTAGC---C-----CCCCACCCCA------CC--C-CCG----CATA----TAG---CCTTGA-----TAGA--AC-----A-ATG-A-TT--T-TTTT--AAAC--G----TTG-AAAA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-A---------------AAATAA-TTA-----Aaaaaagttttttattaattattttggactttttgggtatgcaagacattattgacatgtatttgagatattttcaacgtttaaaaaaatcattgttctatcaaggctatatgcgggggtggggtggggggctaaacccaagcacctgtgctccatgctcggttattatcatcagct
gi|9 : caggttcttggctttaggaccccccccccccccgccccaattgctttgctagaacaattatttctttcttccgttgaacatatctcaaatacatgtcaataatgtcttgcataccccaaaacaacccaatataagcccttttaaaaaattaccctcaatgtcgagagagggcatttttttaaaaagttttttaCTCCAGCT-GCTTGG-TACAGA----------CC-ACCC-C------CC--C-CCT----CCA-----TAAAAGC----A-----TACA--A---------T--A-TT--TATTT----------------A-AAAA-TAT----G-T-------AAT------TT-AACAAATGTTCT-GT--ACCAACCT---C-C-CC-AAAA-AGTCC--A-----------CTAAAATAA-ATT-----AATCCAGCAGAAGCAGGGTTTATTTTTGGGtgctccatgctcggttattatcatcagct
gi|9 : ACA--AA-----A-AT--AATTCATATTTT--T-----GAGTTTTG-AAAA-CCT----C-TTC----TAATAGGATGACTAACAA-TGCATT-GC--A------TGGTA-C-TC-AAAA-AGTCA-AA-----------gagggggatataagggctgtttccactcagatcgtatttgactttttgagtaccatgcaatgcattgttagtcatcctattagaagaggttttcaaaactcaaaaatatgaattatttttgtg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGATCTTTAAGTTTTATTCAGAAAACAACTTAATTCTTAGAAAATTCTTAAACATAAGAGTGCTCTGTGGTTCAATTAAGTCAAGTTTTAAGAATTTCTTAAGTTTCCATGTAAAATGGCCGTCATTGTAATTCACAGAAGGAATTTCAGAGAAAGAACAGACTATTTACAACAGTACAATAA
Unaligned ( gi|16 ): TTCATAAAAGAACGTGATTATTAGAAAATTCTTAAACAGTTCTTAAAGATAAGAGCACTCAGTCGCAGTCCTAAGTTTTAAGAATTTCTTAAGTTCTGAAGTAAAAT
Unaligned ( gi|17 ): TAGACCTCTCCCCGATTCATCCAGTCTCTGATGATGTAAAAATCACAAACTTTGAGACGGCATTT
Alignments
lowQualScore : 111 2222222222 11111 3333333 1111 1 2 1111 1 11111 111 111 111 11 11 22 1111 1 1111 11 11111 11 111 22222 111111 222222222 2 1 1 1111 11 11 4444444444444 11111 111 111 1111 111111111 111111111 1111 333333333333333333333333333333333 3333333333333 111111 333333333333333 11111 1
lowQualScore : 111 6 6 7777777777 66666 9 3333333 6 5555 1 3 1 88 7 0 6 6 6 1 6 99 3333 3 99 99 6 2 5 1 99 6 1 66666 111 111 6 2 6 6 7 99 888 6 99 5 11 11 8 11 88 8 8 99 8 8 3333 8 0 44 3 8 7777 11 8 0 8 8 22222 999 8 0 11 333 8 11111 8 666666 6 7 777777777 6 0 6 6 6 6 99 8 777 6 6 99 1 4444 3 33 00 1 6 6 6 7 5555555555555 1 99999 66666 1 0 0 8 0 0 8 3 8 88 8 8 111 8 0 5 0 444 7777 8 4 6 888888888 4 666666666 66 4 7777 8888 000000000000000000000000000000000 3 44 2 7777777777777 2 2 5555 2 8888888 555 5 2 2 33 222222 66666 5 2 2 3 888888888888888 3 22222 8 3 0 1
lowQualScore : ... . . .......... ..... . ....... . .... . . . .. . . . . . . . .. .... . .. .. . . . . .. . . ..... ... ... . . . . . .. ... . .. . .. .. . .. .. . . .. . . .... . . .. . . .... .. . . . . ..... ... . . .. ... . ..... . ...... . . ......... . . . . . . .. . ... . . .. . .... . .. .. . . . . . ............. . ..... ..... . . . . . . . . . .. . . ... . . . . ... .... . . . ......... . ......... .. . .... .... ................................. . .. . ............. . . .... . ....... ... . . . .. ...... ..... . . . . ............... . ..... . . . .
lowQualScore : 777 7 7 3333333333 77777 3 3333333 7 2222 7 2 0 88 3 0 7 7 7 0 7 22 3333 7 22 22 7 5 5 7 22 7 0 77777 777 777 7 5 7 7 3 22 333 7 22 0 00 00 0 22 88 0 0 22 0 0 0000 0 8 00 8 0 0000 00 0 8 0 0 00000 000 0 8 00 888 0 00000 0 888888 7 8 333333333 7 0 7 7 7 7 22 0 777 7 7 22 3 2222 5 00 22 7 7 7 7 3 2222222222222 0 33333 77777 4 8 8 0 8 8 0 2 0 66 0 0 888 0 8 6 6 666 2222 0 4 7 000000000 4 333333333 11 4 2222 5555 555555555555555555555555555555555 1 22 4 2222222222222 9 7 7777 7 9999999 555 3 9 9 99 111111 66666 7 9 9 1 333333333333333 6 55555 0 2 0 0
consensus : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
Reference ( family-1185 ) : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
gi|1 : GAAAAT---TTTG-C-TC---------GCTGA-----G-TA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAA------CTGTGTAC-TGGAGAAGACACGAGTGTTTCCCTGGG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACAGAAAGTGAATATGA--AGATG-AATACATA-----AACAG---ACA---TCATTACCAC-CGCACCAACACGCAG-GTG-G-TCT--AA---CT-ACACAA--
gi|1 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcaAAAGGATGGTT-GTCAGACAAAGTACAACAGGTAATACAG-GTGAAG-AG-TT-ATCATT-TTTCCTCGCGATACAACC-TTT-CATTGCTACTATTCTTTCTTTGATTCGTAAAGC----GCCCTCTACACTC-AGTAATAG-GGC-GGATCCAAACTGG-CATT-TTTTTTTTTTTTAATGTATCAG----CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTAAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-A-TG-CC-AT-TGATG-TA--AAGGGGTCTATATAAC-T-TAATCATTTTATA-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaggatggttgtcagacaaagtacaacaggtaatacaggtgaagagttatcatttttcctcgcgatacaacctttcattgctactattctttctttgattcgtaaagcgccctctacactcagtaatagggcggatccaaactggcattttttttttttttaatgtatcagcaatattcaaataccaatatgtttacatgattttttaaactgcataattttcttttaatcatatatgtttccagcaccagatgccattgatgtaaaggggtctatataacttaatcattttataattgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcagaaaattttgctcgctgagtaactcgacgatttgttgccactgctaactgtgtactggagaagacacgagtgtttccctgggtccaccgtaccttcaatacatgtcattccgaagaattattccgcgattcattaaattccaacagaaagtgaatatgaagatgaatacataaacagacatcattaccaccgcaccaacacgcaggtggtctaactacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA----TAA---C----A-----TACA--A---------T--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-C-T----CAAAAG-ATGTT-AACAA-TGTCTT-GC--A------T---ACC-CC-AAAA-AGTCC-AG-----------CCAAAATAA-TTA-----AATCCAG-AGAGGCA--GTTTTTTTTttgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : T-GCTTGGTTTGAGG---A-----C---ACCC-AACAGATCC--C-CCT----TTAA----AAA---A----AAAGTCTACA--AT-----A-ATTAA-TT--CATTTCTCG-----G----CTG-AAAA-CCT----C-T-C----TAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---G-C-CC-AAAA-AGTTC-A---------------AAATAA-GTA-----Acttttgttttatcttacttattttgaactttttgggcatgcaagacattgttgacatctattagagaggttttcagccgagaaatgaattaattattgtagactttttttttaaagggggatctgttgggtgtcctcaaaccaagcaatg
gi|11 : aataacatacaatatttattttggttgaaaatctcctcaaaagatgttaacaatgtcttgcataccccaaaaagtccagccaaaataattaaatccagagaggcagttttttttcttttgttttatcCAAGT-GCTTGG-TTTAGA---AGAACACCC-CCCC-A------ACGGC-CTTTGGTCCAA----ACA---C----A-----T-CA--ATTAATTATAT--A-TT--TTTTTT--TTTTACG----TTG-AAAAATAT----C-T-C----AAATAC-ATTTC-AATAA-TGTCTT-GC--A------T---G-CGAC-ACAA-AGTCC-A---------------AAATAACTCA-----AATatg
gi|12 : caA-TCT----C-T-----------G-ATGTC-AACAA-TATTTT-GC--ATT----T---A-CTCC-AACC-AGTTC-A---------------AAATAA-CTaaatacacctctcctcgacattcaatatataatgtatacaatcataaacgtcgagagggcattt
gi|12 : cggtgaaccat--A-TT--T-TTCT--G-----G----TTG-AAAA-TCTAGTGC-T-C----TAAT-C-ACGTC-AAAAA-TGTTTC-ACAAA------T---A-C-AC-ATAA-AATccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaactttaattttatgtgtatttgtgaaacatttttgacgtgattagagcactagattttcaaccagaaaaatgat
gi|14 : cggtgaaccatatctctgatgtcaacaatattttgcatttactccaaccagttcaaaataactccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaacttta-----A-AA--A-CT--TATTTT--GTT---A----TTG-AAAA-TAT----CCT-C----TAATAA-ATGTCCAACAA-TGTCTTTGC--A------T---A-C-CT-AAAA-AGTCT-AA-----------CT-gat
gi|15 : CATGT-GCTAGGGTTCAGA---A-----CC---CCC-A------CC--CTCCG----CCAA----TAG---C----T-----TA-A--AC--------------T--TATTTT--GCT---T----TTG-AAAA-TAT----C-T-CTTATAAATAC-ATGTC-taaaagatgttcttaggccatatttcgagcgtggagcggggc
gi|18 : TA-AAAA-TCT----A-T-C----AAATGT-ATGTC-AACAA-TATCTT-GC--A------T---A-C-CC-CAAA-AGTC---------------CT-AAATAA-Ttgggtgccggtgtattcttcaggtg
gi|2 : gGAAAAT---TTTGTC-TA---------GCTGA-----GCTA-------ACTCG-AC--GCATTTGTTGCCACTGC-AAG-TACACTGTGC----GGAGAAG-CACG-GTGTTTCC-TGAGGT-CCACCGTACCTTCAAT-ACATGTCATT-C--CGA----GATTTATTTCGCG--ATTCA--TTAAATTC-CAACA-AAAGTG--T-TGA--GATTG-AATAC-TA-----AACAG---ACA---TCATTAC-AC-AACAC-AA-ACGCAG-GTG-GTTCT--AA---CT-ACACAA--TC-T--CG--ATTGT--GAAACAAAAT-GACC-GA-GTTCC--ACGCAGG-ACG-CCAGG-AGAT-CCGC-CACTGAA-GT-GGT----CT--AGGCCT-ACTGTTTTGA-A--C--A---GAAGGTTCCCT-TTCAC-ACGCAC--TTGCTTAG-GAG--T--AGT-GGGTATCC--TT--CTAAAAGATGGTT-GTCAGACAAA-TACAA--------ACAG-GTGGAG-AG-TT-ATCATT-TTTC---GCGATGCTA-CATTT-CATAGC--CTACTTTTTCTT-GATTCGTAAAGC----GCCCTTT-TACTCA-GTAA--GTGGC-GGATCCAA-CTGG-GATT-T-ATTTTTTTTTTTAA-AT-------CA-T-TTCA--TACCATTAA----T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-CC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-Aa
gi|3 : ggattcataagatatttaagttatgcttaagtacaagaatttacttaagtcataaaaaaatacttaagtaacgctagaatgtgttttttctttaagttttattcataaagcaacttatttttcagaaaattcttaaatggttctttactttagtgtggtcaatatcagtcttaaagttgttagaaaaacttaagtaaggatcaaaaatgtgccaacagagtacacagacttagatgacttatttgtgacagtgatgtaaacttgtcatttggattgcggttttatttcgatgaatttggactggacatcaattttgtatagtttcacagagaatcacgataatcccacttcaGAAAAT---TTTG-CATCCACTGAGTAACTGA-----GCTAAAT----ACTCG-ACCGA-ATTTGTTGCCACTGCAAAGATACACTTGGCAC-C-GAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTA-CTTCAATAACATGTCATTAC--CGAAGACGAATTATTTCGCGGAATTCAATTTAAATTC-CAAC-CAAAGTG-ATGT-A--AGA-G-AATACGTA-----AACAG---ACA---TCATTA-CACAAACACCAACACGCAG-GTG-GTTCT--AAC--CT-ACACAA--TCCT--CG--AT-G-TGGAAACAAAA--GACC-GA--TTCC--ACGCATGAACG-CCAGG-A--T-CCG--CACTGAAAGT-GGTTAGCCTACAGGCCT-ACTGTTT-GA-AACC--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATTAAAGTGGGGTATTC--CT--TAAAAGGATGGTT-GTCAACCAAACTAC-A--------ACAA-GTG-AATAG-TTGATCA-T-TTTC--CGCG-CACAA-C-TTT-CATAGC--CTACTTTCTCTTTGA-TCGTAAAGCGAGAGCCCTCTACACTCAAGT-A-AGTGGC-GGATACAAACTGG-CATT-TTATTTATTTTTTTTTTA---------AATATTCAAATACCAATATGT--T--TACATG-----ttgaaaggggagggggcaataaataatataagctggaacttacaagtgtt
gi|4 : ccgggattcataaaagatctttaagttatgcttaagtacaagaatttacttatatcaaataaaaaaatattaagtaacgctaagaatgtgtttttttcttaagtttttattcataaagcaacttattttctccagaaaaattcttaaatggttcttaaacttaagtgtggtcaatagtaatcttaagttgttaagaagaaacttaaagtaaggattcaaatggctgccaacagagtacagacagacgtgcttttttagagagaggaaggggctattaggctcagtacagtgatgtaaactgtgcatttggatttgccggtattattttcattaaaagtttgacatggacatcaatttgtgaatagttcacagagaaatcacggtataatccaacttcaTGAAAATGGTTTTG-C-TC---------ACCGATACTGGCTA-------TCTCGCAC--GTATTTGTTGCC-CTGC-AAGATACACTGTG-ACACGGAGAAGACACG-GTGTTTCC-TGAG-TCCCACCTCACCTTCGAT-ACAT-TCATT-CGACGGG---AGATTATT-CGCG--GATTA--TTAAATTCGCAACACAAAGTG---ATGA--AGATGCAATACGTA-----GAAAGATTACAATCTCATTACCAC-GCTACC----CGCAATGTGCGTTCTTAAA---CTAACACAACTTCCTAGCGGAAT-G-TGGAAACAAAATAGACCAGAGGTTCCTTACGCATG-ACGCCCATA-G--TCCCGCTCACTGGAAGTGGGT----GT--ATCACT-ACTG-TT-GACA--CTTATCTGAAGGTTACCCGTTCACAACGC-CGATTA---AG-GAGGTT--AGT-GGGTATTCCGTTCACAAAAGGA-GGGT-GTCAGACAAACTACAA--------ACAGAGTG-AG-AGTTT-ATCATTGTTTC--CGCAGCAC---C-TTTCCATAGC--C-ACTTTCT-TCTAATGCGTAAA------GCCATCTATACTCAGATAA-TACCAC-GGATCCAAACTGGCCATTATTATTTATTTTTT--------------AATATTCAAATACCAATATATGATTATACATGAAGATATTATTCTCACTGC-TAATTGTACTTTT-ATCA-ATATTGTTTCCA-CACCAGCGCTGAAC-ATGTACTGATATTAA-GGGTCTA-AGAACTTTTAATCA-TTGATATAATAA
gi|5 : gttaaagatagatctaataaggatttcaagaatgtgtgctaccaaacagagtagacagagcgttttagagaagaaggactattagcctcagatacgagttatgctaaactttggcatgtttggatttggcggtattgttttcattggaacagtttgatgaatcatttgtccaatagtgcacgagagaatacgtgataaaggtccccctTGAAAAT---TTTG-C-TA---------ACTGA-----G-TA-------ACTTG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACATGAGTGTTTCCATGAG-T-CCACCGTACCTTCAAT-ACATATCATT-C--CGAA---GAATTATTCCGAG--ATTCA--TTAAGTTC-CAACACAAAGTGAATATGACAAGATG-GATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GT-CT--AA---CT-ACACAA--TCCT--CA--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACA-TGAAGGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGAT---AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAATTACAA---------CAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCG-TACAG-C-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC-----CCCTCTTCACTCCAGTAA-AGTGGC-GGATCAAAACTGG-CATT-T-ATTTT--TTTTTTTTTT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAAATGCATAATTTT-CTTTTAATCATATA-TGTTTCCAACACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATC----TATA-AATAAGTGTTACTCCAGCT-GCTTCGGTACAGG---A-----CCC-ACCC-A------CC--C-CTT----CCAA----TAA---C----A-----TACGGTAC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----CAAAAG-ATGTT-AACAA-AGTCTT-AC--A------T---A-C-CCAAAAA-AGTCC-AA-----------CTGAAATAA-TCA-----AATCCAG-AGAGGCAGGGGGTTTTTTTGGGtgaaaggaagaggcagatagaataagctggcacttacaaagtgtta
gi|6 : C--ACGCATG-ACG-CCAGGGA--T-CCGCAC-TTGAAAGT-GGT----CT--AGGCCTTCCTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTG-T-AGCGA---T--AGT-GGGTATCC--T---CAAAAAGATGGTTTGTCAGACAAATTACA----------CAG--TGCAG-AG-TT-ATCATT-TT-C--CGCG-TACAA-C-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC----GCCCTCTACACCC-AGTAA-AGTGGCGGGATCCAAACTGG-CATT-TTATATTTTTTTTTTTTATGTATCAGCAATATTCAAATACCAGTATGT--T--TACATT-----ACTTTTTAAACTGCAT-ATTTT-CTTTTAATCATATA-T-TTTCCAGCACCAG-ACTG-ACAATGTATTG-T----A-GGGTC--------------------TATA-AATAAGTATTACTCCATGCAGCTATAGTACAGA---A-----CCC-ACCC-A-------C--C-CCT----CCAA----TAA---C----A-----TACA---------A-AT--A-TT--TATTTT--G-----G----TTGAAAAA-TCT----C-T-C----CAAAAG-ATGTT-AAC-A-TGTC-T-AC---------T---A-C-CC-AAAA-AGTCC-AA-----------CTGAAATAA-TTA-----AATCCAG-AGA-GCA-GGTTTTTTTTTGGGa
gi|6 : T-GCTCGGGTTTAGAGACA-----CTC-AACA-G------AC--C-CCT----TAAAAAATTAA---T----AC----TACA--AC-----A-ATTGA-TT--CATTTTTCG-----A----TTG-AAA--CCT----C-T-C----TAACAG-ATGCT-AGCAA-TGCCT--GC--A------T---G-C-CC-AAAA-ATTCCCAA-----------TT-AAATAA-ggggtttaaagggctttttcttatttaattgggaatttttgggcatgcaggcattgctagcatctgttagagaggtttcaatcgaaaaatgaatcaattgttgtagtattaattttttaaggggtctgttgagtgtctctaaacccgagcaa
gi|7 : cacgcatgacgccagggatccgcacttgaaagtggtctaggccttcctgtttgaacaacgaaggttccctgttcacacgcacttgtagcgatagtgggtatcctcaaaaagatggtttgtcagacaaattacacagtgcagagttatcattttccgcgtacaactttcatagcctactttctctttgatcgtaaagcgccctctacacccagtaaagtggcgggatccaaactggcattttatattttttttttttatgtatcagcaatattcaaataccagtatgtttacattactttttaaactgcatattttcttttaatcatatattttccagcaccagactgacaatgtattgtagggtctataaataagtattactccatgcagctatagtacagaacccacccacccctccaataacatacaaatatttattttggttgaaaaatctctccaaaagatgttaacatgtctactacccaaaaagtccaactgaaataattaaatccagagagcaggtttttttttgggggggtttaaagggctttttcGAAAAT---TTTG-C-TC---------ACTGA-----GTTAGTGAGTAACTCG-AC--G-ATTTTTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACACGAGTGTTTCCACGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTAAACTTAACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-G-TCT--AAGTTCT-ACACAA--TCAT--CG--AT-G-TGGAAACAAAAT-GACC-GA-GTTCC--Aa
gi|8 : ggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtgacgctaagaatgtgttgtttcttaagttctattcataaagccacttatttcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatagctgccaactgatgtacacagacgacgttttacagagagaagggactatttagctcagtacagtgatgtaaacttgtacatttggatttgaccggtatttatttcattgaaagtttgattgacatcaatttgtcagtagttcacagagaaaacacgcataatccccacttcaCAGGT-TCTTGGCTTTAGG---A-----CCC-CCCC-C------CC--C-CCCGCC-CCAA----TTG---CTTTGC-----TAGA--AC-----A-ATT-A-TT--TCTTTC--TTCC--G----TTG-AACA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---ACC-CC-AAAACAACCC-AATATAAGCCCTTTT-AAAAAA-TTACCCTCAATGTCG-AGAG--AGGGCATTTTTTT
gi|8 : CAGGT-GCTTGGGTTTAGC---C-----CCCCACCCCA------CC--C-CCG----CATA----TAG---CCTTGA-----TAGA--AC-----A-ATG-A-TT--T-TTTT--AAAC--G----TTG-AAAA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-A---------------AAATAA-TTA-----Aaaaaagttttttattaattattttggactttttgggtatgcaagacattattgacatgtatttgagatattttcaacgtttaaaaaaatcattgttctatcaaggctatatgcgggggtggggtggggggctaaacccaagcacctgtgctccatgctcggttattatcatcagct
gi|9 : caggttcttggctttaggaccccccccccccccgccccaattgctttgctagaacaattatttctttcttccgttgaacatatctcaaatacatgtcaataatgtcttgcataccccaaaacaacccaatataagcccttttaaaaaattaccctcaatgtcgagagagggcatttttttaaaaagttttttaCTCCAGCT-GCTTGG-TACAGA----------CC-ACCC-C------CC--C-CCT----CCA-----TAAAAGC----A-----TACA--A---------T--A-TT--TATTT----------------A-AAAA-TAT----G-T-------AAT------TT-AACAAATGTTCT-GT--ACCAACCT---C-C-CC-AAAA-AGTCC--A-----------CTAAAATAA-ATT-----AATCCAGCAGAAGCAGGGTTTATTTTTGGGtgctccatgctcggttattatcatcagct
gi|9 : ACA--AA-----A-AT--AATTCATATTTT--T-----GAGTTTTG-AAAA-CCT----C-TTC----TAATAGGATGACTAACAA-TGCATT-GC--A------TGGTA-C-TC-AAAA-AGTCA-AA-----------gagggggatataagggctgtttccactcagatcgtatttgactttttgagtaccatgcaatgcattgttagtcatcctattagaagaggttttcaaaactcaaaaatatgaattatttttgtg
blockSeqs : GGT T A CACTGAGTAA TACTG C GTGAGTA C CGA A A C AC A A G C A G A GA AGAC T GA AT G C A G CA C G AACTT ATT ATC A C T C T TA GTT A CT C AG GA . TT TA A G TT A C GA C T AC A G TAGC AC T . C ACC TCT A GA CT C ATTAA G CGTTCA T C A A G T T G G . A TA A C . T GAGA A AA A T G C A T TTTTATGTATCAG G GATTA AAGAT T A T G C AA A A ATT . T TTT ATTT T A G AGAACA C CAC GG T TGGT AAAT AAAAGTCTACAATAATTA A CA A TTTTACG A A AGTG C CTTATA AGG C A T AA CCAACC GGTA G A C C ATATAAGCCCTTTT C CCCTC C G G G
blockSeqs : . . . G . C AAT . GC T A C C A A . . . G . . G T . . . C A A . . G . . . . C . . T . C . . C . . . T T . . . . . A . A AC A . . . . . . CTT AC . . CT . GTT . CT . C A . C . . . . . G AA . . . T . A AG T T . . . T TTTTTT A T . T . . A . C . . A . T TA ATT . . G GACA . AA . . GCC . CATCAATTAATTATAT . . T TGAGTT . . . . TCT AG T . . . TT AC T . . . ACTG . . . G G T
blockSeqs : . . . A . C . . GT T A C T A . . . . A . . A C . . . C . A . . G . . . . C . . T . . . . C . . . T T . . . . . G . A A G . . . . . . C AC . . T . AT . TT . T A . . . . . . . . AG . . . G . T CA A C . . . T TAAAT G T . T . . G . A . . A . . TA . . . G A . AC . . . . CTTTGCTAGAACAATT . . A TTCCG . . . . CT AC . . . . . G . . . . ACTG . . . A G A
blockSeqs : . . . A . T . . G . A C T . . . . . G . . A C . . . C . A . . G . . . . . . . T . . . . A . . . T . . . . . . A . . T A . . . . . . C AC . . . . T . T . T . . . . . . . . . AA . . . . . A A A T . . . . TTTTA G T . A . . . . A . . . . . . . . . G A . AC . . . . CCTTGATAGAACAATG . . A AAACG . . . . CA AA . . . . . G . . . . ACTA . . . . . T
blockSeqs : . . . A . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . . . T . . C A . GA . . . . TACTACAACAATTG . . A TCGG . . . . CT AC . . . . . A . . . . ACT . .
blockSeqs : . G A . CC . . . . CATACGGTACAAT . . A GTTA . . . . CT GT . . . . . A . . . . ATT . .
blockSeqs : . . C . CC . . . . AAGCATACAAT . . A GCTT . . . . CA AG . . . . . A . . . . CT . .
blockSeqs : . . . . A . . . . CATACAAAT . . C TCGA . . . . CC AG . . . . . A . . . . . .
blockSeqs : . CTTAAAC . . A GG . . . . CC AG . . . . . A . . . . . .
blockSeqs : . . A GG . . . . CT AC . . . . . A . . . . . .
blockSeqs : . . . GG . . . . CA AC . . . . . G . . . . .
blockSeqs : . . . . . . . . CA G . . . . . A . . . .
blockSeqs : . . . . . C . . . . . C . . .
blockSeqs : . . . . . .
blockSeqCons : G*** A*** AC AC* T** A******** ** AA* ** AA A* TTTT********* T** **** AC******* CATACAACAT*********************** GG*********** A**** ACT************
originalCons : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGCT-AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTTAT-------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC-TATAATCATTTTATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-----A-AT--A-TT--TATTTT--G-----G----TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
finalCons : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-ACG---ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGGA---T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGT--AG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAAA--------CAG-GTG-AG-AG-TT-ATCATT-TTTC--CGCGATACAA-C-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAAA-GTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTTTTTTT---------CAATATTCAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAACT--TAATC----TATA-AATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCCAC-------C--C-CCT----CCAA----TAACATACAACAT-----------------------A-TT--TATTTTGG-----------TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------TA----C-CC-AAAA-AGTCC-AACT------------AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGATCTTTAAGTTTTATTCAGAAAACAACTTAATTCTTAGAAAATTCTTAAACATAAGAGTGCTCTGTGGTTCAATTAAGTCAAGTTTTAAGAATTTCTTAAGTTTCCATGTAAAATGGCCGTCATTGTAATTCACAGAAGGAATTTCAGAGAAAGAACAGACTATTTACAACAGTACAATAA
Unaligned ( gi|16 ): TTCATAAAAGAACGTGATTATTAGAAAATTCTTAAACAGTTCTTAAAGATAAGAGCACTCAGTCGCAGTCCTAAGTTTTAAGAATTTCTTAAGTTCTGAAGTAAAAT
Unaligned ( gi|17 ): TAGACCTCTCCCCGATTCATCCAGTCTCTGATGATGTAAAAATCACAAACTTTGAGACGGCATTT
Alignments
lowQualScore : 111 2222222222 11111 3333333 1111 1 2 1111 1 11111 111 111 111 11 11 22 1111 1 1111 11 11111 11 222 22222 111111 222222222 1 1 1 1 1111 11 11 444444444444444444444 11111 111 2222 55555 111111111 111111111 1111 44444444444444444444444444444444 333333333333 111111 333333333333333 11111 1
lowQualScore : 111 6 6 7777777777 66666 9 3333333 6 5555 1 3 1 88 7 0 6 6 6 1 6 99 3333 3 99 99 6 2 5 1 99 6 1 66666 111 111 6 2 6 6 7 99 888 6 99 5 11 11 8 11 88 8 8 99 8 8 3333 8 0 44 3 8 7777 11 8 0 8 8 22222 999 8 0 11 777 8 11111 8 666666 6 7 777777777 6 3 6 6 6 6 6 99 8 3 3 6 99 1 4444 3 33 00 1 6 6 6 7 000000000000000000000 6 6 1 99999 66666 1 0 0 8 0 0 8 3 8 88 8 8 111 8 0 5 0 2222 44444 0 4 6 888888888 4 666666666 66 4 7777 8888 44444444444444444444444444444444 6 3 6 555555555555 2 2 5555 2 8888888 555 5 2 2 33 222222 66666 5 2 2 3 888888888888888 3 22222 8 3 0 1
lowQualScore : ... . . .......... ..... . ....... . .... . . . .. . . . . . . . .. .... . .. .. . . . . .. . . ..... ... ... . . . . . .. ... . .. . .. .. . .. .. . . .. . . .... . . .. . . .... .. . . . . ..... ... . . .. ... . ..... . ...... . . ......... . . . . . . . .. . . . . .. . .... . .. .. . . . . . ..................... . . . ..... ..... . . . . . . . . . .. . . ... . . . . .... ..... . . . ......... . ......... .. . .... .... ................................ . . . ............ . . .... . ....... ... . . . .. ...... ..... . . . . ............... . ..... . . . .
lowQualScore : 777 7 7 3333333333 77777 3 3333333 7 2222 7 2 0 88 3 0 7 7 7 0 7 22 3333 7 22 22 7 5 5 7 22 7 0 77777 777 777 7 5 7 7 3 22 333 7 22 0 00 00 0 22 88 0 0 22 0 0 0000 0 8 00 8 0 0000 00 0 8 0 0 00000 000 0 8 00 888 0 00000 0 888888 7 8 333333333 7 3 7 7 7 7 7 22 0 5 3 7 22 3 2222 5 00 22 7 7 7 7 3 777777777777777777777 7 7 0 33333 77777 4 8 8 0 8 8 0 2 0 66 0 0 888 0 8 6 6 8888 00000 8 4 7 000000000 4 333333333 11 4 2222 5555 55555555555555555555555555555555 2 1 2 333333333333 9 7 7777 7 9999999 555 3 9 9 99 111111 66666 7 9 9 1 333333333333333 6 55555 0 2 0 0
consensus : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGC-TAG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCGATACAAC-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTT--TTTTT---------CA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC--TATAATCATTT-TATAAATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-------A--T-A-TTTATTTT--G-----G---TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
Reference ( family-1185 ) : TGAAAAT---TTTG-C-TC---------GCTGA-----GCTA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-CGGAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GTTCT--AA---CT-ACACAA--TCCT--CG--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACACTGAAAGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTG--TAG-GAGATT--AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAACTACAA--------ACAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCGATACAAC-TTT-CATAGC--CTACTTTCTCTTTGATTCGTAAAGC----GCCCTCTACACTCAAGTAA-AGTGGC-GGATCCAAACTGG-CATT-TTATTTTTTTTT--TTTTT---------CA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC--T-TAATC-----TATAAATAAGTGTTACTCCAGGT-GCTTGGGTTCAGA---A-----CCC-ACCC-A------CC--C-CCT----CCAA----TAA---C----A-----TACA--AC-------A--T-A-TTTATTTT--G-----G---TTG-AAAA-TCT----C-T-C----NAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-AA-----------CT-AAATAA-TTA-----AATCCAG-AGAGGCAGGGTTTTTTTTTGGG
gi|1 : GAAAAT---TTTG-C-TC---------GCTGA-----G-TA-------ACTCG-AC--G-ATTTGTTGCCACTGCTAA------CTGTGTAC-TGGAGAAGACACGAGTGTTTCCCTGGG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACAGAAAGTGAATATGA--AGATG-AATACATA-----AACAG---ACA---TCATTACCAC-CGCACCAACACGCAG-GTG-G-TCT--AA---CT-ACACAA--
gi|1 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcaAAAGGATGGTT-GTCAGACAAAGTACAACAGGTAATACAG-GTG-AAG-AG-TT-ATCATT-TTTCCTCGCGATACAACCTTT-CATTGCTACTATTCTTTCTTTGATTCGTAAAGC----GCCCTCTACACTCA-GTAATAG-GGC-GGATCCAAACTGG-CATT-TTTTTTTTTTTTAATGTAT---------CAGCAAT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTAAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-A-TG-CC-AT-TGATG-TA--AAGGGGTCTATATAAC--T-TAATCATTT-TATAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaggatggttgtcagacaaagtacaacaggtaatacaggtgaagagttatcatttttcctcgcgatacaacctttcattgctactattctttctttgattcgtaaagcgccctctacactcagtaatagggcggatccaaactggcattttttttttttttaatgtatcagcaatattcaaataccaatatgtttacatgattttttaaactgcataattttcttttaatcatatatgtttccagcaccagatgccattgatgtaaaggggtctatataacttaatcattttataattgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : agggccaggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtaacgctgataatgtgttgttttcttaagttttattcataaagcaacttatttcttagaaaattcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatggttgccaacagagtacacagatgacgttagtacagtgatgtaaacttgtacatttggatttggccggtatttattttattgaaaatttgactggacatcaatttgttagtagttcacagagaaatcacgcataatccccacttcagaaaattttgctcgctgagtaactcgacgatttgttgccactgctaactgtgtactggagaagacacgagtgtttccctgggtccaccgtaccttcaatacatgtcattccgaagaattattccgcgattcattaaattccaacagaaagtgaatatgaagatgaatacataaacagacatcattaccaccgcaccaacacgcaggtggtctaactacacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA----TAA---C----A-----TACA--A-----------T-A-TTTATTTT--G-----G---TTG-AAAA-TCT----C-C-T----CAAAAG-ATGTT-AACAA-TGTCTT-GC--A------T---ACC-CC-AAAA-AGTCC-AG-----------CCAAAATAA-TTA-----AATCCAG-AGAGGCA--GTTTTTTTTttgaaaggggagggggcaataaaataatatagctgagaacttcacaacgtggt
gi|10 : T-GCTTGGTTTGAGG---A-----C---ACCC-AACAGATCC--C-CCT----TTAA----AAA---A----AAAGTCTACA--AT-------AATT-AATTCATTTCTCG-----G---CTG-AAAA-CCT----C-T-C----TAATAG-ATGTC-AACAA-TGTCTT-GC--A------T---G-C-CC-AAAA-AGTTC-A---------------AAATAA-GTA-----Acttttgttttatcttacttattttgaactttttgggcatgcaagacattgttgacatctattagagaggttttcagccgagaaatgaattaattattgtagactttttttttaaagggggatctgttgggtgtcctcaaaccaagcaatg
gi|11 : aataacatacaatatttattttggttgaaaatctcctcaaaagatgttaacaatgtcttgcataccccaaaaagtccagccaaaataattaaatccagagaggcagttttttttcttttgttttatcCAAGT-GCTTGG-TTTAGA---AGAACACCC-CCCC-A------ACGGC-CTTTGGTCCAA----ACA---C----A-----T-CA--ATTAATTATA--T-A-TTTTTTTT--TTTTACG---TTG-AAAAATAT----C-T-C----AAATAC-ATTTC-AATAA-TGTCTT-GC--A------T---G-CGAC-ACAA-AGTCC-A---------------AAATAACTCA-----AATatg
gi|12 : caA-TCT----C-T-----------G-ATGTC-AACAA-TATTTT-GC--ATT----T---A-CTCC-AACC-AGTTC-A---------------AAATAA-CTaaatacacctctcctcgacattcaatatataatgtatacaatcataaacgtcgagagggcattt
gi|12 : cggtgaaccat-A-TTT-TTCT--G-----G---TTG-AAAA-TCTAGTGC-T-C----TAAT-C-ACGTC-AAAAA-TGTTTC-ACAAA------T---A-C-AC-ATAA-AATccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaactttaattttatgtgtatttgtgaaacatttttgacgtgattagagcactagattttcaaccagaaaaatgat
gi|14 : cggtgaaccatatctctgatgtcaacaatattttgcatttactccaaccagttcaaaataactccgaaaaaccctttttaaaatcgcctaacactaggacatttttgttataaaaaatgcacagtttgaatttattctggaacttta-A-CTTATTTT--GTT---A---TTG-AAAA-TAT----CCT-C----TAATAA-ATGTCCAACAA-TGTCTTTGC--A------T---A-C-CT-AAAA-AGTCT-AA-----------CT-gat
gi|15 : CATGT-GCTAGGGTTCAGA---A-----CC---CCC-A------CC--CTCCG----CCAA----TAG---C----T-----TA-A--AC---------------TTATTTT--GCT---T---TTG-AAAA-TAT----C-T-CTTATAAATAC-ATGTC-ttttaaaagatgttcttaggccatatttcgagcgtggagcggggc
gi|18 : TA-AAAA-TCT----A-T-C----AAATGT-ATGTC-AACAA-TATCTT-GC--A------T---A-C-CC-CAAA-AGTC---------------CT-AAATAA-Ttgggtgccggtgtattcttcaggtg
gi|2 : gGAAAAT---TTTGTC-TA---------GCTGA-----GCTA-------ACTCG-AC--GCATTTGTTGCCACTGC-AAG-TACACTGTGC----GGAGAAG-CACG-GTGTTTCC-TGAGGT-CCACCGTACCTTCAAT-ACATGTCATT-C--CGA----GATTTATTTCGCG--ATTCA--TTAAATTC-CAACA-AAAGTG--T-TGA--GATTG-AATAC-TA-----AACAG---ACA---TCATTAC-AC-AACAC-AA-ACGCAG-GTG-GTTCT--AA---CT-ACACAA--TC-T--CG--ATTGT--GAAACAAAAT-GACC-GA-GTTCC--ACGCAGG-ACG-CCAGG-AGAT-CCGC-CACTGAA-GT-GGT----CT--AGGCCT-ACTGTTTTGA-A--C--A---GAAGGTTCCCT-TTCAC-ACGCAC--TTGCTTAG-GAG--T--AGT-GGGTATCC--TT--CTAAAAGATGGTT-GTCAGACAAA-TACAA--------ACAG-GTGGA-G-AG-TT-ATCATT-TTTC---GCGATGCTACATTT-CATAGC--CTACTTTTTCTT-GATTCGTAAAGC----GCCCTTT-TACTCA-GTAA--GTGGC-GGATCCAA-CTGG-GATT-T-ATTTTTTTTT--TT------------AA---ATCATTTCA--TACCATTAA----T--TACATG-----ATTTTTTTAACTGCATAATTTT-CTTTTAATCATATA-TGTTTCCAGCACCAG-ACTG-CC-ATGTACTG-TA--AA-GGGTCTATATAAC--TATAATCATTT-TATAAa
gi|3 : ggattcataagatatttaagttatgcttaagtacaagaatttacttaagtcataaaaaaatacttaagtaacgctagaatgtgttttttctttaagttttattcataaagcaacttatttttcagaaaattcttaaatggttctttactttagtgtggtcaatatcagtcttaaagttgttagaaaaacttaagtaaggatcaaaaatgtgccaacagagtacacagacttagatgacttatttgtgacagtgatgtaaacttgtcatttggattgcggttttatttcgatgaatttggactggacatcaattttgtatagtttcacagagaatcacgataatcccacttcaGAAAAT---TTTG-CATCCACTGAGTAACTGA-----GCTAAAT----ACTCG-ACCGA-ATTTGTTGCCACTGCAAAGATACACTTGGCAC-C-GAGAAGACACGAGTGTTTCC-TGAG-T-CCACCGTA-CTTCAATAACATGTCATTAC--CGAAGACGAATTATTTCGCGGAATTCAATTTAAATTC-CAAC-CAAAGTG-ATGT-A--AGA-G-AATACGTA-----AACAG---ACA---TCATTA-CACAAACACCAACACGCAG-GTG-GTTCT--AAC--CT-ACACAA--TCCT--CG--AT-G-TGGAAACAAAA--GACC-GA--TTCC--ACGCATGAACG-CCAGG-A--T-CCG--CACTGAAAGT-GGTTAGCCTACAGGCCT-ACTGTTT-GA-AACC--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGC-TAG-GAGATTAAAGTGGGGTATTC--CT--TAAAAGGATGGTT-GTCAACCAAACTAC-A--------ACAA-GTG-A-ATAG-TTGATCA-T-TTTCC--GCG-CACAAC-TTT-CATAGC--CTACTTTCTCTTTGA-TCGTAAAGCGAGAGCCCTCTACACTCAAGT-A-AGTGGC-GGATACAAACTGG-CATT-TTATTTATTTTT--TTTTT---------AA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ttgaaaggggagggggcaataaataatataagctggaacttacaagtgtt
gi|4 : ccgggattcataaaagatctttaagttatgcttaagtacaagaatttacttatatcaaataaaaaaatattaagtaacgctaagaatgtgtttttttcttaagtttttattcataaagcaacttattttctccagaaaaattcttaaatggttcttaaacttaagtgtggtcaatagtaatcttaagttgttaagaagaaacttaaagtaaggattcaaatggctgccaacagagtacagacagacgtgcttttttagagagaggaaggggctattaggctcagtacagtgatgtaaactgtgcatttggatttgccggtattattttcattaaaagtttgacatggacatcaatttgtgaatagttcacagagaaatcacggtataatccaacttcaTGAAAATGGTTTTG-C-TC---------ACCGATACTGGCTA-------TCTCGCAC--GTATTTGTTGCC-CTGC-AAGATACACTGTG-ACACGGAGAAGACACG-GTGTTTCC-TGAG-TCCCACCTCACCTTCGAT-ACAT-TCATT-CGACGGG---AGATTATT-CGCG--GATTA--TTAAATTCGCAACACAAAGTG---ATGA--AGATGCAATACGTA-----GAAAGATTACAATCTCATTACCAC-GCTACC----CGCAATGTGCGTTCTTAAA---CTAACACAACTTCCTAGCGGAAT-G-TGGAAACAAAATAGACCAGAGGTTCCTTACGCATG-ACGCCCATA-G--TCCCGCTCACTGGAAGTGGGT----GT--ATCACT-ACTG-TT-GACA--CTTATCTGAAGGTTACCCGTTCACAACGC-CGATTA---AG-GAGGTT--AGT-GGGTATTCCGTTCACAAAAGGA-GGGT-GTCAGACAAACTACAA--------ACAGAGTG-A-G-AGTTT-ATCATTGTTTCC--GCAGCAC--C-TTTCCATAGC--C-ACTTTCT-TCTAATGCGTAAA------GCCATCTATACTCAGATAA-TACCAC-GGATCCAAACTGGCCATTATTATTTATTTTT--T--------------A---AT-ATT-CAAATACCAATATATGATTATACATGAAGATATTATTCTCACTGC-TAATTGTACTTTT-ATCA-ATATTGTTTCCA-CACCAGCGCTGAAC-ATGTACTGATATTAA-GGGTCTA-AGAACTTT-TAATCATTGATAT-AATAA
gi|5 : gttaaagatagatctaataaggatttcaagaatgtgtgctaccaaacagagtagacagagcgttttagagaagaaggactattagcctcagatacgagttatgctaaactttggcatgtttggatttggcggtattgttttcattggaacagtttgatgaatcatttgtccaatagtgcacgagagaatacgtgataaaggtccccctTGAAAAT---TTTG-C-TA---------ACTGA-----G-TA-------ACTTG-AC--G-ATTTGTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACATGAGTGTTTCCATGAG-T-CCACCGTACCTTCAAT-ACATATCATT-C--CGAA---GAATTATTCCGAG--ATTCA--TTAAGTTC-CAACACAAAGTGAATATGACAAGATG-GATACGTA-----AACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-GT-CT--AA---CT-ACACAA--TCCT--CA--AT-GTTGGAAACAAAAT-GACC-GA-GTTCC--ACGCATG-ACG-CCAGG-A--T-CCGCACA-TGAAGGT-GGT----CT--AGGCCT-ACTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTGC-TAG-GAGAT---AGT-GGGTATCC--TT--CAAAAGGATGGTT-GTCAGACAAATTACAA---------CAG-GTG-A-G-AG-TT-ATCATT-TTTCC--GCG-TACAGC-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC-----CCCTCTTCACTCCAGTAA-AGTGGC-GGATCAAAACTGG-CATT-T-ATTTTTTTTT--TTTTT---------CA---AT-ATT-CAAATACCAATATGT--T--TACATG-----ATTTTTTTAAATGCATAATTTT-CTTTTAATCATATA-TGTTTCCAACACCAG-ACTG-AC-ATGTACTG-TA--AA-GGGTCTATATAAC--TATAATC-----TATAAATAAGTGTTACTCCAGCT-GCTTCGGTACAGG---A-----CCC-ACCC-A------CC--C-CTT----CCAA----TAA---C----A-----TACGGTACA------A--T-A-TTTATTTT--G-----G---TTG-AAAA-TCT----C-T-C----CAAAAG-ATGTT-AACAA-AGTCTT-AC--A------T---A-C-CCAAAAA-AGTCC-AA-----------CTGAAATAA-TCA-----AATCCAG-AGAGGCAGGGGGTTTTTTTGGGtgaaaggaagaggcagatagaataagctggcacttacaaagtgtta
gi|6 : C--ACGCATG-ACG-CCAGGGA--T-CCGCAC-TTGAAAGT-GGT----CT--AGGCCTTCCTGTTT-GA-A--C--AAC-GAAGGTTCCCTGTTCAC-ACGCAC--TTG--TAGCGA---T--AGT-GGGTATCC--T---CAAAAAGATGGTTTGTCAGACAAATTACA----------CAG--TGCA-G-AG-TT-ATCATT-TT-CC--GCG-TACAAC-TTT-CATAGC--CTACTTTCTCTTTGAT-CGTAAAGC----GCCCTCTACACCC-AGTAA-AGTGGCGGGATCCAAACTGG-CATT-TTATATTTTTTT--TTTTTATGTATCAGCA---AT-ATT-CAAATACCAGTATGT--T--TACATT-----ACTTTTTAAACTGCAT-ATTTT-CTTTTAATCATATA-T-TTTCCAGCACCAG-ACTG-ACAATGTATTG-T----A-GGG-----------------TC-----TATAAATAAGTATTACTCCATGCAGCTATAGTACAGA---A-----CCC-ACCC-A-------C--C-CCT----CCAA----TAA---C----A-----TACA--A--------A--T-A-TTTATTTT--G-----G---TTGAAAAA-TCT----C-T-C----CAAAAG-ATGTT-AAC-A-TGTC-T-AC---------T---A-C-CC-AAAA-AGTCC-AA-----------CTGAAATAA-TTA-----AATCCAG-AGA-GCA-GGTTTTTTTTTGGGa
gi|6 : T-GCTCGGGTTTAGAGACA-----CTC-AACA-G------AC--C-CCT----TAAAAAATTAA---T----AC----TACA--AC-------AATTGA-TTCATTTTTCG-----A---TTG-AAA--CCT----C-T-C----TAACAG-ATGCT-AGCAA-TGCCT--GC--A------T---G-C-CC-AAAA-ATTCCCAA-----------TT-AAATAA-ggggtttaaagggctttttcttatttaattgggaatttttgggcatgcaggcattgctagcatctgttagagaggtttcaatcgaaaaatgaatcaattgttgtagtattaattttttaaggggtctgttgagtgtctctaaacccgagcaa
gi|7 : cacgcatgacgccagggatccgcacttgaaagtggtctaggccttcctgtttgaacaacgaaggttccctgttcacacgcacttgtagcgatagtgggtatcctcaaaaagatggtttgtcagacaaattacacagtgcagagttatcattttccgcgtacaactttcatagcctactttctctttgatcgtaaagcgccctctacacccagtaaagtggcgggatccaaactggcattttatattttttttttttatgtatcagcaatattcaaataccagtatgtttacattactttttaaactgcatattttcttttaatcatatattttccagcaccagactgacaatgtattgtagggtctataaataagtattactccatgcagctatagtacagaacccacccacccctccaataacatacaaatatttattttggttgaaaaatctctccaaaagatgttaacatgtctactacccaaaaagtccaactgaaataattaaatccagagagcaggtttttttttgggggggtttaaagggctttttcGAAAAT---TTTG-C-TC---------ACTGA-----GTTAGTGAGTAACTCG-AC--G-ATTTTTTGCCACTGCTAAGATACACTGTGCAC-TGGAGAAGACACGAGTGTTTCCACGAG-T-CCACCGTACCTTCAAT-ACATGTCATT-C--CGAA---GAATTATTCCGCG--ATTCA--TTAAATTC-CAACACAAAGTGAATATGA--AGATG-AATACGTAAACTTAACAG---ACA---TCATTACCAC-AGCACCAACACGCAG-GTG-G-TCT--AAGTTCT-ACACAA--TCAT--CG--AT-G-TGGAAACAAAAT-GACC-GA-GTTCC--Aa
gi|8 : ggattcataaagatatttaagttatgcttaagtacaagaatttacttaagtcaataaaaaatacttaagtgacgctaagaatgtgttgtttcttaagttctattcataaagccacttatttcttaaatggttcttaactttaagtgtggtcaatagcagtcttaagttgttaagaaaaacttaagtaaggaatcaaaatagctgccaactgatgtacacagacgacgttttacagagagaagggactatttagctcagtacagtgatgtaaacttgtacatttggatttgaccggtatttatttcattgaaagtttgattgacatcaatttgtcagtagttcacagagaaaacacgcataatccccacttcaCAGGT-TCTTGGCTTTAGG---A-----CCC-CCCC-C------CC--C-CCCGCC-CCAA----TTG---CTTTGC-----TAGA--AC-------AATT-A-TTTCTTTC--TTCC--G---TTG-AACA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---ACC-CC-AAAACAACCC-AATATAAGCCCTTTT-AAAAAA-TTACCCTCAATGTCG-AGAG--AGGGCATTTTTTT
gi|8 : CAGGT-GCTTGGGTTTAGC---C-----CCCCACCCCA------CC--C-CCG----CATA----TAG---CCTTGA-----TAGA--AC-------AA-TGA-TTT-TTTT--AAAC--G---TTG-AAAA-TAT----C-T-C----AAATAC-ATGTC-AATAA-TGTCTT-GC--A------T---A-C-CC-AAAA-AGTCC-A---------------AAATAA-TTA-----Aaaaaagttttttattaattattttggactttttgggtatgcaagacattattgacatgtatttgagatattttcaacgtttaaaaaaatcattgttctatcaaggctatatgcgggggtggggtggggggctaaacccaagcacctgtgctccatgctcggttattatcatcagct
gi|9 : caggttcttggctttaggaccccccccccccccgccccaattgctttgctagaacaattatttctttcttccgttgaacatatctcaaatacatgtcaataatgtcttgcataccccaaaacaacccaatataagcccttttaaaaaattaccctcaatgtcgagagagggcatttttttaaaaagttttttaCTCCAGCT-GCTTGG-TACAGA----------CC-ACCC-C------CC--C-CCT----CCA-----TAAAAGC----A-----TACA--A-----------T-A-TTTATTT---------------A-AAAA-TAT----G-T-------AAT------TT-AACAAATGTTCT-GT--ACCAACCT---C-C-CC-AAAA-AGTCC--A-----------CTAAAATAA-ATT-----AATCCAGCAGAAGCAGGGTTTATTTTTGGGtgctccatgctcggttattatcatcagct
gi|9 : C-------A--T-A-TTT---TT--G-----AGTTTTG-AAAA-CCT----C-TTC----TAATAGGATGACTAACAA-TGCATT-GC--A------TGGTA-C-TC-AAAA-AGTCA-AA-----------gagggggatataagggctgtttccactcagatcgtatttgactttttgagtaccatgcaatgcattgttagtcatcctattagaagaggttttcaaaactcaaaaatatgaattatttttgtg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGATCTTTAAGTTTTATTCAGAAAACAACTTAATTCTTAGAAAATTCTTAAACATAAGAGTGCTCTGTGGTTCAATTAAGTCAAGTTTTAAGAATTTCTTAAGTTTCCATGTAAAATGGCCGTCATTGTAATTCACAGAAGGAATTTCAGAGAAAGAACAGACTATTTACAACAGTACAATAA
Unaligned ( gi|16 ): TTCATAAAAGAACGTGATTATTAGAAAATTCTTAAACAGTTCTTAAAGATAAGAGCACTCAGTCGCAGTCCTAAGTTTTAAGAATTTCTTAAGTTCTGAAGTAAAAT
Unaligned ( gi|17 ): TAGACCTCTCCCCGATTCATCCAGTCTCTGATGATGTAAAAATCACAAACTTTGAGACGGCATTT