lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 111111 22 1111 1 11 1 1111 111111111 000000000000000000000000000000000000000000000000000000000000000000000000 1111111111 22222222222222 1 99999999999999999999999999 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222 11 444444444444444444 1 111
lowQualScore : 11 111 6 444444 11 1 3 6666 1 1 1 0 0 8 4 0 1 3 22 3 3 3 5 0000 66 3 3 3 3 333333333 555 3 222222222222222222222222222222222222222222222222222222222222222222222222 0 66 1111111111 55555555555555 44 4 2 88888888888888888888888888 3 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 4 66 33333333 66 3 888888888888888888 4 9 000
lowQualScore : .. ... . ...... .. . . .... . . . . . . . . . . .. . . . . .... .. . . . . ......... ... . ........................................................................ . .. .......... .............. .. . . .......................... . . ......................................................................................................................... . . .. ........ .. . .................. . . ...
lowQualScore : 22 777 7 333333 33 8 5 0000 4 6 4 1 1 9 0 5 3 3 33 3 3 3 0 4444 22 3 3 3 3 333333333 888 3 222222222222222222222222222222222222222222222222222222222222222222222222 4 77 9999999999 66666666666666 77 0 0 44444444444444444444444444 6 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 11 44444444 66 7 666666666666666666 3 3 000
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---CAATATT-ATTGATAGTCCAT-T--TTGTTTATGTGGGAAAA-ATGAAGATGTGTA-TCATTTCT-TCTT-TTCTTGTA-GAA-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T---C------------TT------------T------------TCA--T-----------G-C---------TTGATTT-AATCAATAT------A---GATACA--------AA--CCTGTT-GTTATCGGGTAATGCCAGTTTAC-CTTTAC--A---C-AACA-AACTCTANTATTTTTGCTGCTGTCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TAAT---G-------A-----TT-TGT--CA---TT----TATT---C-TTTATT----TTATA-TT-ATCATA--TG-CA---GTTAACGCTTT-GTTCCACTGTCTTATATCCAC---AC-CTTT----ATTTGCATGGCACT---GTAATTGT
Reference ( gi|7 ) : TATTTTAAACTATGATCT---CTA-TAAACG---CAATATT-GTTGATAGTCCAT-T--TTGTTTATGTGGGAAAA-ATGAAGATGTTTA-TCATTTCT-TCTT-TTCTTGTA-GAA-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T---C------------TT------------T------------TCA--T-----------G-C---------TTGATTC-AATCAATAT------A---GATACA--------AA--TATGTT-GTAATCGGGTAATGTCAGTTTAC-CTTTACCAATTGC-AACA-AATTTTATTATTTTTGCTGCTGTCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TAATT--G-------A-----TT-TAT--CA---TT----CATT---C-TTTATT----TTGTA-TT-ATCATA--TA-CA---GTTAACGCTTC-GTTCCACTGTCTTGTATCAAC---AC----T----ATTTGCATGTCACT---GTAATTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G----AATATTCATTGATAGTCCAT-T--TTGTTTATGTGGGAAAA-ATGAAGATGTTTA-TAAT---T-TCCT-TTCTTGTA-GAA-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T---CTTTTTAATAGCATT------------T------------TCA--T-----------G-----------TTGATTT-AATCAATAT------A---GATACA--------AA--TCTGTT-GTTATTGGGTAATGCCAGTTTAC-CTT
gi|3 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatTATTTTGAACTATATTCT---ATA-TAA--T---CAATATT--TTGATTGTCCATTT--TTGTTTATG
gi|22 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagcTTAAACTATGATCT---CTA-TAAACG---CAATAC---------ATCTAT-C--TC-TTTATGTGGGGGAA-A-----------A-TAAT---T-TCTT-TTCTTGTA-GAC-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T---C------------TTTTAAATAGCCTAT------------TCA--C-----------G-C---------TTGATTT-AATCAA
gi|6 : aacTAAACTATAATTTATCCTT-TACTCGTTACAACATT-TGTAAAAGTCCTTCT--TTGGTTCTGTGGAAAAAAATGAAGATGTGTA-TCATATCT-TTTT-TGCTTGTA-AAA-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGAC------------TA------------T------------TCA--G-----------G-A---------TTGATTT-GGTCAACAT------A---GATATA--------GACCTATATTCCTAA-GGGGAAATGAAAATTCAT-TTTTGTAAACT---AACG-----CGAGTATTCTTGCTGCTGTTCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TAA------------A-----AC-TAT--CATATTT----AATTTCAC-TTTACT----TTCTATTT-ATC-TA--Tatgg
gi|5 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacAACTAT---CC---CTA-TTAACG---CTATATT-ATTGATACTCCAT-TCTTTGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGAAGATTAT----CAT-A-T-GGT-AG-G-AA---------CG---ACT---C------------TT------------TAATAGCATAT--TCAA-T-----------G-T---------TTGATTTTAATCAATAT------AATAGATACA--------AT--CTTTTT-GTTATCAG---ATGTCAGTTTACTCTTTACCGA-----GACATAATTTT--TAGTTTTGC-GCTGTCCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GAGTA--G-------A-----TT-TA----A---TT----T-TT---CATTTATT----TCATA-TTGATCATAGGTATC-----TTAAGGCTTTAGTTCCA-TGTCTTGTACC-AC---AT----C----CTTTGCATGACACT---t
gi|9 : atagtttgcACTATGATTT---ACA-TAAGCG---CAACATT-ATCGACAATCC---T--TTG------------AA-ATGAAGATATGTA-TCATTTCT-TATT-TGCTTGTA-AGA-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T---C------------TT------------T------------TTAATT-----------GACTATTCAGAATTGATTT-GATTAACAT------A---GATATA--------CA--CCTATT-ACTATGGGATAACGGAAATTTA------AC--ATTGCAAACC-AACACCAATATTTTTGCTGCTGTTCATAAAT------------T-------------TA------------TAGAT-----
gi|2 : actataactacatgtataactctTGTTCTTGCGTTAATA-ATGAAAACGTGTA-TCATTTCT-TTTT-TACCTGTA-GAA-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T---T------------TTGATAGACTA---T------------TTA--T-----------G-C---------TTGATTT-GGTCAATAA------A---GATACATGTGTACCAA--CCTGTT-ATCATAAGGTAATGTAAATTTGT-C---A-CA------AACC-AGTACTAGTATAGATGCCGTTGCTCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TAATTACG-------ATATATTT-TAT--CA---TT----gaatcatacatgtagattcaaataattcctatatatactagta
gi|24 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcatgatttgcaaaagcgttagcattataaagactagtatttctttctgTAGGAAAA-ATT----TGTCAA--CATTTTT-T--T-TTCTTGTA-GAA-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC--C------------TT------------T------------TGA--TA----------G-C---------TT-ATTC-Atgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|11 : TGAATATGTGTA-T-ATTTCT-T-----TCTT-TA-GAA--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T---C------------TT------------T------------TAA--TAGTCTATTCAAG-C---------TTTATTT-AATCAATAT------A---TATACA--------AA--TCTGTT-GTTATCCGGTAATGTCTGTTTAC-CTTTAT------C-GACA-AACTTCAATATTTTTGCTGCTTTTTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TGATC--GAATCGTTA-----TT-TATTGCA---TTTCTACACT---C-TTTATTTGTGTTGTA-TT-Atg
gi|10 : ggggggAAGATGTATA-TC--TTTT-TCCC---CCTGTA-TAA-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T---C------------TTTTTACTAGCCTAT------------TCA--T-----------G-C---------TTGATTT-AATCAATAT------A---AATACA--------AA--TCTGTT-GTTATCGGGTAATGCCAGTATGC-CTTTAC------C-AACA-AACTTTATTATTTTTGCTGCTATCCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CAATC--G-------A-----GT-TGT--AA---TT----GATT---A---TACG----TTGTA-TT---------------------ACGTTGT-GTTCCACTCTCTTAAAGCCAC---ACACTTT----ATTTGCATGACACT---GTAA
gi|8 : -TTATTTTT-TGTTGTTGTTGCA-GAA-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T---C------------TT------------TGTAATAGCTTATTCA--T-----------G-C---------TTGATTT-AATCATTG------------------------------ATGTT----ATCGGGTAATGTCGGTTTA--------------C-AACA-AACTGTATTATTTTTGCTGCTGTCCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TAATG--T-------A-----TTATAT--TA---------CA-------TTGATT----TT----CT-ATCATA--TG-CA---TTTAACGCTTT-GTTCCACTGTCTTATATCCAC---ACTCTTT----ATTTGCATGGCACT---AT
gi|28 : atCATTTTT-T--T-TTCTTGTA-GAA-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC--C------------TT------------T------------TGA--TA----------G-C---------TT-ATTC-Atgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
gi|12 : atttgtcaaTTCA-TCAT-TTCTTTTA-GAA-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T---C------------TTTATAATAGCCTAT------------TCA--T-----------G-C---------TTGATTT-AATCAATATACTAGAA---GACAAA--------AA--TCTGGT-GTTATCAGGTAATGCCAGTTTAC-----A------------------TTATTATTTTTTATGCTTTCCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TAATC--A-------A-----TT-TGT--CA---------------------ATTA---TCATA-TC-ATCATA--TG-CA---tg
gi|13 : caataAATAT------A---GACACA--------AA--C-TGTT-GTTATCGGGTACTGCCAGCTTAC-CTTTACCGA-------CA-AACGGTACTATTTTTGCTGCTGTCCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTAATT--G-------A-----TT-TGT--CA---TT----TATT---A----A-------TATA-TC-ATAATA--TG-CA---TTTAACGCTTT-GTTCCACTGTCTTATAT-AACCGTACTCTTT----ATTTGCACAGCACT---ATAAtaaaaaaatataaaacgctttgtt
gi|21 : ATTATATTTGCTGCCGTCTATAAAT------------T-----------------------------------------------------G-------A-----TT-TGT--CA---TT----TATT-----------------ATA-TC-AACATA--TG-CATTTGTTATCGCTTT-GTTCCACTGTCTTATATC--C---AC----T----CTTT-TATG--ATT---GTA
gi|15 : ATTATATTTGCTGCCGTCTATAAAT------------T-----------------------------------------------------G-------A-----TT-TGT--CA---TT----TATT-----------------ATA-TC-AACATA--TG-CATTTGTTATCGCTT--GTTCCACTGTCTTATATC--C---AC----T----CTTT-TATG--ATT---GTActacaagtgttgtgtttagggagaacaagaacttgattccaattc
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA------CCAT----------------------T--CA---TT-----ATT---C-TTTA-T----ATGCA-TT-ATCATA--TA-CA---GTTGACGCTTT-GTTCCACTGctacaagtgttgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|23 : CACTGTCTTACATCCAC---GC----TTTTTATTTGCATGTCACTATGATAATTGT
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): ACAAGGTGTTAATTTGTTTTTGTATGTTAATTACTCAAAGCTAGAAATACTAGTTGACTATTTATATTTGATTTTATGTCAACACATATACAACCAGCTATGATGGGGTGATAAAAATTTGTCATTGCAAACCAATACCAGAATTTTGCAGCACTAGCTGTTCATAAATTCATTTGCATAGATAAATACCATCTATCTTAATATCACTATATAGTATGTTATTTGACCTTGTTCCACTTTTATAATTTGCAATTATTTATTATCCAATGTACGCGACATATTTTTTGTAATATTTAAGGAGAGGAGTCAGGATAGTAGAGAGAACCTGTCTCCAGTCTGGTTCATTTTATACTAAAATATACAAGTGAATGTGTGTTCAAAACATGTAATTATATTAATTAATCTGAATTCTTTGTGAAATATAATTCATTCA
Unaligned ( gi|14 ): ATTCAGATATCGATTTAGTTTACCATAAAATATACCACCTATTACCGTGGGGTAAAGAAATCTTATCATTGCAAACAAACAACCATTTATTTTTTGTTTTTGCTTGTTCCATAAATCTATAAGGTTGAATTCCATTGTTAGATTCAATAGTTTAATTTGCATATACTAAGTACTATTAGATTATATTTTAATTAAA
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 11111111 3333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222222222 22 1111
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 44 555 999999 22222222 44 2 3 1 6666666 3 55 77 2 6666 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 3 4 888888888888 4 55 4 777 22 0 3 2 0 0000 3
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . .. ... ...... ........ .. . . . ....... . .. .. . .... . .......................................................................................................... . . . ............ . .. . ... .. . . . . .... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 6666666666666666666666666666666666666666666666666666666666666666666666666666 9 66 888 666666 11111111 66 9 3 4 4444444 6 77 33 1 5555 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 0 555555555555 0 55 0 000 22 1 2 5 2 2222 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT--CAAT---ATA------GATACA--------AACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTAC-----ACA-ACA-AACNCTANTATTTT----TGCT-GCTGTCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TTTATTTTA-TA-TT-ATCATATG-C-------A---NT-T--AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT--CAAT---ATA------GATACA--------AACC--TGTTGTTATCGGGTAATGCCAGTTTAC-CTTTAC-----ACA-ACA-AACTCTANTATTTT----TGCT-GCTGTCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TTTATTTTA-TA-TT-ATCATATG-C-------A---GT-T--AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---GTAATTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT--CAAT---ATA------GATACA--------AATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT--CAAT---ATA------AATACA--------AATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTAC------CA-ACA-AACTTTATTATTTT----TGCT-GCTATCCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTAAT-TG--ATT---A---TACGTTG-TA-TT-----------------------------ACGTTGT-GTTCCACTCTCTTAAAG--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT--CAAT---ATA------TATACA--------AATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTAT------CG-ACA-AACTTCAATATTTT----TGCT-GCTTTTTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTTAT-TT--ATT---
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT--CAAT---ATACTAGAAGACAAA--------AATC--TGGTGTTATCAGGTAATGCCAGTTTAC-ATT----------------------ATTATTTT----TTAT-GCTTTCCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TA-A-TC--AA-----TTTGTCAA-TT--A-------------TCA-TA-TC-ATCATATG-CATAAAAAA---ATATAAAACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------AAC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTAC------CG-ACA-AACGGTACTATTTT----TGCT-GCTGTCCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTCAT-TT--ATT---A----A---TA-TA-TC-ATAATATG-C-------A---TT-T--AACGCTTT-GTTCCACTGTCTTATATAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|15 : ATTATATT----TGCT-GCCGTCTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-C-------ATTTGT-T--ATCGCTT--GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGT
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT--CAAT---AAA------GATACATGTGTACCAACC--TGTTATCATAAGGTAATGTAAATTTGT-C---AC-----A-A-ACC-AGTACTAGTATAGA----TGCC-GTTGCTCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATCAT-TT--tgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcATTATATT----TGCT-GCCGTCTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-C-------ATTTGT-T--ATCGCTTT-GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT--CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACAT--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA------CC-A-T--------------TCA--TT--ATT---C-TTTA-TATG-CA-TT-ATCATATA-C-------A---GT-T--GACGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGTCAAC---ACA------TATACA--------A-CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTGC-----A-A-ACC-AATACCAGAATTTTGCAGCACTAGCTGTTCATAAAT------------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACCAT-CT--A-T---C-TTAATATCACTA--T-ATAGTATGTT-------A---TT-T--GA--CCTT-GTTCCAC--TTTTATA
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT--CAATATAATA------GATACA--------ATCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTAC-----CGAGACATAATTTT--TAGTTT----TGC--GCTGTCCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA--AT-TT---TT---CATTTATTTCA-TA-TTGATCATAGG-T-------AT--CT-T--AAGGCTTTAGTTCCA-TGTCTTGTA---CCACAT-CC---TTTGCATGACACT---atttgcaattatttattatccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT--CAAC---ATA------GATATA--------GACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTGT-----A-A-ACT-AACGCGAGTATTCT----TGCT-GCTGTTCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATATTTAATTTCAC-TTTACTTTC-TATTT-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT--CAAT---ATA------GATACA--------AATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACCAATTGCA-ACA-AATTTTATTATTTT----TGCT-GCTGTCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATCAT-TC--ATT---C-TTTATTTTG-TA-TT-ATCATATA-C-------A---GT-T--AACGCTTC-GTTCCACTGTCTTGTAT--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT--CA-------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC--------------A-ACA-AACTGTATTATTTT----TGCT-GCTGTCCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATTATATT--A-----CATTGATTTT-----CT-ATCATATG-C-------A---TT-T--AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT--TAAC---ATA------GATATA--------CACC--TATTACTATGGGATAACGGAAATTTAA-CATTGC-----A-A-ACC-AACACCAATATTTT----TGCT-GCTGTTCATAAAT------------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTCAGATATCGATTTAGTTTACCATAAAATATACCACCTATTACCGTGGGGTAAAGAAATCTTATCATTGCAAACAAACAACCATTTATTTTTTGTTTTTGCTTGTTCCATAAATCTATAAGGTTGAATTCCATTGTTAGATTCAATAGTTTAATTTGCATATACTAAGTACTATTAGATTATATTTTAATTAAA
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 3333333 11111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222222222222 22
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 999 555 888888 1111111111 44 0 1 3 2 5555555 3 44 777 2 00000000 6666 2 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 4 3333333333333333 4 777 22 0 3 2 0 888 1
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . ... ... ...... .......... .. . . . . ....... . .. ... . ........ .... . . .......................................................................................................... . . . ................ . ... .. . . . . ... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 444 888888 9999999999 22 8 0 1 6 9999999 3 55 111 0 44444444 1111 9 9 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 0 1111111111111111 0 000 22 1 2 5 2 888 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTAC-----A-A-ACA-AACN-CTATT--------ATTTT----TGCT-GCTGT-CCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TTTATTTTA-TA-TT-ATCATATG-C-------A-TT-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTAC-----ACA-ACA-AACN-CTANT--------ATTTT----TGCT-GCTGT-CCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TTTATTTTA-TA-TT-ATCATATG-C-------A-NT-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------AATACA--------A-ATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTAC------CA-ACA-AACT-TTATT--------ATTTT----TGCT-GCTAT-CCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTAAT-TG--ATT---A---TACGTTG-TA-TT----------------------------ACGTTGT-GTTCCACTCTCTTAAAG--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT---CAAT---ATA------TATACA--------A-ATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTAT------CG-ACA-AACT-TCAAT--------ATTTT----TGCT-GCTTT-TTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTTAT-TT--ATT---
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATACTAGAAGACAAA--------A-ATC--TGGTGTTATCAGGTAATGCCAGTTTAC-AT-----------------------TATT--------ATTTT----TTAT-GCTTT-CCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TA-A-TC--AA-----TTTGTCAA-TT--A-------------TCA-TA-TC-ATCATATG-CATAAAAAA-ATATAA-AACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------A-AC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTAC------CG-ACA-AACG-GTACT--------ATTTT----TGCT-GCTGT-CCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTCAT-TT--ATT---A----A---TA-TA-TC-ATAATATG-C-------A-TT-T---AACGCTTT-GTTCCACTGTCTTATATAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|14 : ----TCGA-TTTAGTTTACCAT---A-A------AATATA--------CCACC--TATTACCGTGGGGTAAAGAAATCTTAT-CATTGC-----A-A-ACA-AACAACCATTTATTTTTTGTTTT----TGCT---TGTTCCATAAAT------------C-------------TA------------TA
gi|15 : attcagataATT--------ATATT----TGCT-GCCGT-CTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-C-------A-TT-TGTTATCGCTT--GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTaggttgaattccattgttagattcaatagtttaatttgcatatactaagtactattagattatattttaattaaa
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT---CAAT---AAA------GATACATGTGTACCA-ACC--TGTTATCATAAGGTAATGTAAATTTGT-C---AC-----A-A-ACC-AGTA-CTAGT--------ATAGA----TGCC-GTTGC-TCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATCAT-TT--tgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcATT--------ATATT----TGCT-GCCGT-CTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-C-------A-TT-TGTTATCGCTTT-GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT---CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACAT--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA------CC-A-T--------------TCA--TT--ATT---C-TTTA-TATG-CA-TT-ATCATATA-C-------A-GT-T---GACGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGT-CAAC---ACA------TATACA--------A--CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTGC-----A-A-ACC-AATA-CCAGA--------ATTTTGCAGCACTAGCTGT-TCATAAAT------------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACCAT-CT--A-T---C-TTAATATCACTA--T-ATAGTATGTT-------A-TT-T---GA--CCTT-GTTCCAC--TTTTATA
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT---CAATATAATA------GATACA--------A-TCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTAC-----CGAGACATAATT-TT--T--------AGTTT----TGC--GCTGT-CCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA--AT-TT---TT---CATTTATTTCA-TA-TTGATCATAGG-T-------ATCT-T---AAGGCTTTAGTTCCA-TGTCTTGTA---CCACAT-CC---TTTGCATGACACT---atttgcaattatttattatccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT---CAAC---ATA------GATATA--------G-ACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTGT-----A-A-ACT-AACG-CGAGT--------ATTCT----TGCT-GCTGT-TCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATATTTAATTTCAC-TTTACTTTC-TATTT-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT---CAAT---ATA------GATACA--------A-ATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACCAATTGCA-ACA-AATT-TTATT--------ATTTT----TGCT-GCTGT-CCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATCAT-TC--ATT---C-TTTATTTTG-TA-TT-ATCATATA-C-------A-GT-T---AACGCTTC-GTTCCACTGTCTTGTAT--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT---CA--------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC--------------A-ACA-AACT-GTATT--------ATTTT----TGCT-GCTGT-CCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATTATATT--A-----CATTGATTTT-----CT-ATCATATG-C-------A-TT-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT---TAAC---ATA------GATATA--------C-ACC--TATTACTATGGGATAACGGAAATTTAA-CATTGC-----A-A-ACC-AACA-CCAAT--------ATTTT----TGCT-GCTGT-TCATAAAT------------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 1111111111 111111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222222222 22
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 999 555 888888 1111111111 44 0 1 3 2 4444444444 1 777 111111111 6666 2 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7777 4 7777777777777 4 777 22 0 3 2 0 888 1
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . ... ... ...... .......... .. . . . . .......... . ... ......... .... . . .......................................................................................................... .... . ............. . ... .. . . . . ... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 444 888888 9999999999 22 8 0 1 6 1111111111 2 111 333333333 1111 9 9 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222 0 4444444444444 0 000 22 1 2 5 2 888 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TT-ATTTTA-TA-TT-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTCAT-TT--ATT---C-TTTATTTTA-TA-TT-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------AATACA--------A-ATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTA-C--C-----AACAAAC-TTTA--------TTATTTT----TGCT-GCTA-TCCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTAAT-TG--A-------------TTA-TA------CGT-TG-TAT-------T------ACGTTGT-GTTCCACTCTCTTAAAG--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT---CAAT---ATA------TATACA--------A-ATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTA-T--C-----GACAAAC-TTCA--------ATATTTT----TGCT-GCTT-TTTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTTAT-TT--ATT---
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATACTAGAAGACAAA--------A-ATC--TGGTGTTATCAGGTAATGCCAGTTTAC-AT-----------------------TA--------TTATTTT----TTAT-GCTT-TCCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TA-A-TC--AA-----TTTGTCAA-TT--A-------------TCA-TA-TC-ATCATATG-CATAAAAAAATATAA-AACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------A-AC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTA-C--C-----GACAAAC-GGTA--------CTATTTT----TGCT-GCTG-TCCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTCAT-TT--ATT---A----A---TA-TA-TC-ATAATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATATAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|14 : ----TCGA-TTTAGTTTACCAT---A-A------AATATA--------CCACC--TATTACCGTGGGGTAAAGAAATCTTAT-CATTG-C--A-----AACAAACAACCATTTATTTTTTGTTTT----TGCT---TGTTCCATAAAT------------C-------------TA------------TA
gi|15 : attcagataA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-CAT-------T-TGTTATCGCTT--GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTaggttgaattccattgttagattcaatagtttaatttgcatatactaagtactattagattatattttaattaaa
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT---CAAT---AAA------GATACATGTGTACCA-ACC--TGTTATCATAAGGTAATGTAAATTTGT-C---A-C--A-----AACCAGT-ACTA--------GTATAGA----TGCC-GTTG-CTCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATCAT-TT--tgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTCAT-TT--ATT-------------A-TA-TC-AACATATG-CAT-------T-TGTTATCGCTTT-GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT---CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACAT--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA------CC-A-T--------------TCA--TT--ATT---C-TTTA-TATG-CA-TT-ATCATATA-CAG-------T-T---GACGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGT-CAAC---ACA------TATACA--------A--CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTG-C--A-----AACCAAT-ACCA--------GAATTTTGCAGCACTAGCTG-TTCATAAAT------------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACCAT-CT--A-T---C-TTAATATCACTA--T-ATAGTATGTTAT-------T-T---GA--CCTT-GTTCCAC--TTTTATA
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT---CAATATAATA------GATACA--------A-TCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTA-CCGA-----GACATAA-TTT---------TTAGTTT----TGC--GCTG-TCCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA--AT-TT---TT---CATTTATTTCA-TA-TTGATCATAGG-TATC------T-T---AAGGCTTTAGTTCCA-TGTCTTGTA---CCACAT-CC---TTTGCATGACACT---atttgcaattatttattatccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT---CAAC---ATA------GATATA--------G-ACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTG-T--A-----AACTAAC-GCGA--------GTATTCT----TGCT-GCTG-TTCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATATTTAATTTCAC-TTTACTTTC-TATTT-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT---CAAT---ATA------GATACA--------A-ATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACC--AATTGCAACAAAT-TTTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATCAT-TC--ATT---C-TTTATTTTG-TA-TT-ATCATATA-CAG-------T-T---AACGCTTC-GTTCCACTGTCTTGTAT--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT---CA--------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC----------------AACAAAC-TGTA--------TTATTTT----TGCT-GCTG-TCCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATTATATT--A-----CATTGATTTT-----CT-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT---TAAC---ATA------GATATA--------C-ACC--TATTACTATGGGATAACGGAAATTTAA-CATTG-C--A-----AACCAAC-ACCA--------ATATTTT----TGCT-GCTG-TTCATAAAT------------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 1111111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222 22
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 999 555 888888 1111111111 44 0 1 3 2 4444444444 1 22222222222222 6666 2 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 7777777777777 4 777 22 0 3 2 0 888 1
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . ... ... ...... .......... .. . . . . .......... . .............. .... . . ....................................................................................................................... . ............. . ... .. . . . . ... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 444 888888 9999999999 22 8 0 1 6 1111111111 2 99999999999999 1111 9 9 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 4444444444444 0 000 22 1 2 5 2 888 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------AATACA--------A-ATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTA-C--C-----AACAAAC-TTTA--------TTATTTT----TGCT-GCTA-TCCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTA--AT-TGA-------------T-TAT--A-----------CGT-TG-TAT-------T------ACGTTGT-GTTCCACTCTCTTAAAG--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT---CAAT---ATA------TATACA--------A-ATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTA-T--C-----GACAAAC-TTCA--------ATATTTT----TGCT-GCTT-TTTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTT--AT-TTA--TT
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATACTAGAAGACAAA--------A-ATC--TGGTGTTATCAGGTAATGCCAGTTTAC-ATT-----------------------A--------TTATTTT----TTAT-GCTT-TCCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TA-A-TC--AA-----TTTGTC--AA-TTA-------------T-CAT--A-T-----C-ATCATATG-CATAAAAAAATATAA-AACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------A-AC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTA-C--C-----GACAAAC-GGTA--------CTATTTT----TGCT-GCTG-TCCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTC--AT-TTA--TTA-----A----TAT--A-T-----C-ATAATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATATAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|14 : ----TCGA-TTTAGTTTACCAT---A-A------AATATA--------CCACC--TATTACCGTGGGGTAAAGAAATCTTAT-CATTG-C--A-----AACAAACAACCATTTATTTTTTGTTTT----TGCT---TGTTCCATAAAT------------C-------------TA------------TA
gi|15 : attcagataA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTATCGCTT--GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTaggttgaattccattgttagattcaatagtttaatttgcatatactaagtactattagattatattttaattaaa
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT---CAAT---AAA------GATACATGTGTACCA-ACC--TGTTATCATAAGGTAATGTAAATTTGT-C---A-C--A-----AACCAGT-ACTA--------GTATAGA----TGCC-GTTG-CTCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATC--AT-TTtgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTATCGCTTT-GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT---CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACAT--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA--------------------------CC--AT-TCA--TTA---TTCTTTATATGCA-T-----T-ATCATATA-CAG-------T-T---GACGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGT-CAAC---ACA------TATACA--------A--CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTG-C--A-----AACCAAT-ACCA--------GAATTTTGCAGCACTAGCTG-TTCATAAAT------------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACC--AT-CTA---TC---TTA-----AT--A-TCACTAT-ATAGTATGTTAT-------T-T---GA--CCTT-GTTCCAC--TTTTATA
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT---CAATATAATA------GATACA--------A-TCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTA-CCGA-----GACATAA-TTT---------TTAGTTT----TGC--GCTG-TCCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA----AT-TT---TTCAT-TTATTT-CAT--A-T-----TGATCATAGG-TATC------T-T---AAGGCTTTAGTTCCA-TGTCTTGTA---CCACAT-CC---TTTGCATGACACT---atttgcaattatttattatccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT---CAAC---ATA------GATATA--------G-ACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTG-T--A-----AACTAAC-GCGA--------GTATTCT----TGCT-GCTG-TTCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATAT-TTAATTTCACTTTACTT-TCT--ATT-----T-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT---CAAT---ATA------GATACA--------A-ATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACC--AATTGCAACAAAT-TTTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATC--AT-TCA--TTCT--TTATTT-TGT--A-T-----T-ATCATATA-CAG-------T-T---AACGCTTC-GTTCCACTGTCTTGTAT--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT---CA--------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC----------------AACAAAC-TGTA--------TTATTTT----TGCT-GCTG-TCCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATT--ATATTA--CAT---TGATTT-T------C-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT---TAAC---ATA------GATATA--------C-ACC--TATTACTATGGGATAACGGAAATTTAA-CATTG-C--A-----AACCAAC-ACCA--------ATATTTT----TGCT-GCTG-TTCATAAAT------------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 1111111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222 22
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 999 555 888888 1111111111 44 0 1 3 2 4444444444 1 22222222222222 6666 2 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 7777777777777 4 777 22 0 3 2 0 888 1
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . ... ... ...... .......... .. . . . . .......... . .............. .... . . ....................................................................................................................... . ............. . ... .. . . . . ... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 444 888888 9999999999 22 8 0 1 6 1111111111 2 99999999999999 1111 9 9 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 4444444444444 0 000 22 1 2 5 2 888 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------AATACA--------A-ATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTA-C--C-----AACAAAC-TTTA--------TTATTTT----TGCT-GCTA-TCCATAAAT------------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTA--AT-TGA-------------T-TAT--A-----------CGT-TG-TAT-------T------ACGTTGT-GTTCCACTCTCTTAAAG--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT---CAAT---ATA------TATACA--------A-ATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTA-T--C-----GACAAAC-TTCA--------ATATTTT----TGCT-GCTT-TTTATAAAT------------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTT--AT-TTA--TT
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATACTAGAAGACAAA--------A-ATC--TGGTGTTATCAGGTAATGCCAGTTTAC-ATT-----------------------A--------TTATTTT----TTAT-GCTT-TCCATAAATTATAGATGAAACT-------------TG------------TAGA------GTA-AG---TA-A-TC--AA-----TTTGTC--AA-TTA-------------T-CAT--A-T-----C-ATCATATG-CATAAAAAAATATAA-AACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------A-AC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTA-C--C-----GACAAAC-GGTA--------CTATTTT----TGCT-GCTG-TCCATTAAT------------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTC--AT-TTA--TTA-----A----TAT--A-T-----C-ATAATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATATAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|14 : ----TCGA-TTTAGTTTACCAT---A-A------AATATA--------CCACC--TATTACCGTGGGGTAAAGAAATCTTAT-CATTG-C--A-----AACAAACAACCATTTATTTTTTGTTTT----TGCT---TGTTCCATAAAT------------C-------------TA------------TA
gi|15 : attcagataA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTATCGCTT--GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTaggttgaattccattgttagattcaatagtttaatttgcatatactaagtactattagattatattttaattaaa
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT---CAAT---AAA------GATACATGTGTACCA-ACC--TGTTATCATAAGGTAATGTAAATTTGT-C---A-C--A-----AACCAGT-ACTA--------GTATAGA----TGCC-GTTG-CTCAAAAAT------------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATC--AT-TTtgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcA--------TTATATT----TGCT-GCCG-TCTATAAAT------------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTATCGCTTT-GTTCCACTGTCTTATAT--CCACTC-TTTTA--TG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT---CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACAT--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT------------T-------------TG------------TAGAT-----TTA--------------------------CC--AT-TCA--TTA---TTCTTTATATGCA-T-----T-ATCATATA-CAG-------T-T---GACGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGT-CAAC---ACA------TATACA--------A--CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTG-C--A-----AACCAAT-ACCA--------GAATTTTGCAGCACTAGCTG-TTCATAAAT------------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACC--AT-CTA---TC---TTA-----AT--A-TCACTAT-ATAGTATGTTAT-------T-T---GA--CCTT-GTTCCAC--TTTTATA
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT---CAATATAATA------GATACA--------A-TCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTA-CCGA-----GACATAA-TTT---------TTAGTTT----TGC--GCTG-TCCATCAAT------------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA----AT-TT---TTCAT-TTATTT-CAT--A-T-----TGATCATAGG-TATC------T-T---AAGGCTTTAGTTCCA-TGTCTTGTA---CCACAT-CC---TTTGCATGACACT---atttgcaattatttattatccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT---CAAC---ATA------GATATA--------G-ACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTG-T--A-----AACTAAC-GCGA--------GTATTCT----TGCT-GCTG-TTCAC-AAT------------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATAT-TTAATTTCACTTTACTT-TCT--ATT-----T-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT---CAAT---ATA------GATACA--------A-ATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACC--AATTGCAACAAAT-TTTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATC--AT-TCA--TTCT--TTATTT-TGT--A-T-----T-ATCATATA-CAG-------T-T---AACGCTTC-GTTCCACTGTCTTGTAT--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT---CA--------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC----------------AACAAAC-TGTA--------TTATTTT----TGCT-GCTG-TCCATAAATGTATAAC-----T-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATT--ATATTA--CAT---TGATTT-T------C-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT---TAAC---ATA------GATATA--------C-ACC--TATTACTATGGGATAACGGAAATTTAA-CATTG-C--A-----AACCAAC-ACCA--------ATATTTT----TGCT-GCTG-TTCATAAAT------------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
blockSeqs : GA ATC . G TTAC A GAC TTCTTTCTG T A A A C G A TT G ATAG CA T T . C TGCTTTTTT TAC C CTTTTTACTAGCCTATTCATGC T TTA ATA CTAGAA TGTGTACCA TA C T T CCAATTGC A AACCATTTATTTTT GCAG A T TTACGGATGAAACTTTAGATTTAAAGAGTAGATTTAATTTTTCATTTATTTCATATTG T AAAAAAATATAA A TAA TC T C ATG G
blockSeqs : GA . . A TT A . TCTT A G . . C . . . . A T . . . . . . . CTTTATAATAGCCTATTCATGC . GT . . CC . T . T CCGA A TTCAA . . . TCAATATACATGTATACTAAAACTATCATATTTAATTTCACTTTACTTTCTATTT . TTGTT . T TT T C . T
blockSeqs : AT . . A C T . TTT . G . . T . . . . . T . . . . . . . CTTTTAAATAGCCTATTCACGC . . . . A . C . T TC A GGTAC . . . TTATAGATGAAACTTGTAGATTTAATTGATTTGTCATTTATTAATATATC . TTGTT . T TC T C . T
blockSeqs : AA . . T C G . CTT . T . . C . . . . . T . . . . . . . CTTTGTAATAGCTTATTCATGC . . . . A . C . T CC C ACTAG . . . TATAGATGAAACTTGTAGAGTAAGTAATCAATTTGTCAATTATCATATC . CTT . T T T C .
blockSeqs : GA . . A C A . CT . G . . T . . . . . C . . . . . . . CTTTTTAATTGACTATTCAGAA . . . . A . A . A CA C ACCAG . . . TTGTAGATTTAAGTAATTGATTTATCATTCATTCTTTATTTTGTATT . TT . T T T C .
blockSeqs : GA . . G C . . TT . T . . T . . . . . C . . . . . . . CTTTTAATAGTCTATTCAAGC . . . . A . T . A CA A GCGAG . . . GTATAACTTGTAGATTTAAGTAATGTATTATATTACATTGATTTTCT . TT . T C . . .
blockSeqs : . . . . C . . TT . G . . T . . . . . C . . . . . . . CTTTAATAGCATATTCAATGT . . . . A . A . T CA T TTTAT . . . TCATTTGCATAGATAAATACCATCTATCTTAATATCACTAT . TT . . . . . .
blockSeqs : . . . C . . . . . C . . . . . . . TTTGATAGACTATTTATGC . . . . A . T . T TA A TGTAT . . . TTGTAGATTTACCATTCATTATTCTTTATATGCATT . TT .
blockSeqs : . . . G . . . . . T . . . . . . . AGTTGACTATTTATAT . . . . G . A . T CA A ACCAA . . . TGATTTGTCATTTATTATATC . TT .
blockSeqs : . A . . . . . C . . . . . . . TGACTATTCAGGA . . . . A . T . A . C TTTT . . . TGATTTGTCATTTATTATATC
blockSeqs : . . . . . . . T . . . . . . . CCTTTTGATAGC . . . . C . T . . . . AT . . .
blockSeqs : . . . . . . . A . . . . . . . CCTTTTGATAGC . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . CTTTTCATGC . . . .
blockSeqs : .
blockSeqCons : GA C**** A* TT*********** TC
originalCons : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AACGCTTT-GTTCCACTGTCTTATAT--CCACAC-CTTTATTTGCATGGCACT---ATAANTGT
finalCons : TGTTTTAAACTATGATCT---CTA-TAAACGC----AATATTA-TTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT------------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CATTT-----------AACGCTTT-GTTCCACTGTCTTATAT--CCACACTCTTTATTTGCATGGCACT---ATAANTGT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 11 11111111111 1 111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 1111111111 11111111111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222 111111
lowQualScore : 33 888 5 4 22222 00 888 0 77777777777 0 0 0 6 4 0 3 6 2 2 33 2 8888 33 2 2 2 2 111111111 555 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 2 999 555 888888 1111111111 44 0 1 3 2 4444444444 1 22222222222222 6666 2 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 1111111111111 55 4 333333 3 1 4 2 0 888 1
lowQualScore : .. ... . . ..... .. ... . ........... . . . . . . . . . . .. . .... .. . . . . ......... ... . ............................................................................ . ... ... ...... .......... .. . . . . .......... . .............. .... . . .................................................................................................................. . ............. .. . ...... . . . . . ... .
lowQualScore : 66 888 0 1 00000 22 888 4 00000000000 1 2 0 6 0 5 1 5 9 9 99 9 9999 99 9 9 9 9 444444444 000 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 444 888888 9999999999 22 8 0 1 6 1111111111 2 99999999999999 1111 9 9 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 9999999999999 55 0 000000 9 0 6 5 2 888 0
consensus : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT-------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AA--CGCTTT-GTTCCACTGTCTTATA---T--CCACACTCTTTATTTGCATGGCACT---ATAANTGT
Reference ( family-1156 ) : TGTTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-ATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTGT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ACC--TGTTGTTATCGGGTAATGNCAGTTTAC-CTTTA-C--A-----AACAAAC-NCTA--------TTATTTT----TGCT-GCTG-TCCATAAAT-------T-------------TG------------TAGAT-----TTA-AG---TA-A-T---GA-----TTTGTC--AT-TTA--TTC---TTATTT-TAT--A-T-----T-ATCATATG-CAT-------T-T---AA--CGCTTT-GTTCCACTGTCTTATA---T--CCACACTCTTTATTTGCATGGCACT---ATAANTGT
gi|1 : TGTTTTAAACTATG--CT---CTAATAAA-G-----AATATTCATTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATAAT---T-TCCT-TTCTTGT-AGA--A-ATTAT----CAC-AGT-TCT-AGAA-AA---------AA---A-T------CTTTTTAATAGCATT------------T------------TC-A--T-----------G-----------TTGA-TTTAAT---CAAT---ATA------GATACA--------A-ATC--TGTTGTTATTGGGTAATGCCAGTTTAC-CTT
gi|10 : gcaaacatctaatgtgcaagaatagttacttggtcttcgctatctttgtttcaaacaggcaataacttcatcggaaaatcgttggtgtacctcacaacaaaacacgttgttgttgagaccagtgccctgtaattattctggtaattgttcaaaacgcatgaaatgtatcacatatacattaagcttgaataccgccgtaataaagataagtttttcaatccaaacatgtgatatagaatattcaatagaagtcctttgtatagatgcagtaaaaaagtgaatccagtaaaatggtaaacgctagcggaatcatctttccattaattaattcacgaaaatccgatgctacatgccaaaaatccctgcgcataagtttagtttggcaaacttacaccaaatataattcataccaagctaagacaacaatAAGATGTAT-ATC--TTTT-TCCC---CCTGT-ATA--A-CTTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTTACTAGCCTAT------------TC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATA------AATACA--------A-ATC--TGTTGTTATCGGGTAATGCCAGTATGC-CTTTA-C--C-----AACAAAC-TTTA--------TTATTTT----TGCT-GCTA-TCCATAAAT-------T-------------TATAGATGAAAATTTAGAT-----TTA-AG---CA-A-TC--GA-----GTTGTA--AT-TGA-------------T-TAT--A-----------CGT-TG-TAT-------T------A--CGTTGT-GTTCCACTCTCTTAAA---G--CCACACACTTTATTTGCATGACACT---GTAA
gi|11 : TGAATATGTGT-AT-ATTTCT-T-----TCTT-T-AGA--A--TCAT----CAT-AATTGCTTAG-A-AA---------CA---A-T------C------------TT------------T------------TA-A--TAGTCTATTCAAG------C----TTTA-TTTAAT---CAAT---ATA------TATACA--------A-ATC--TGTTGTTATCCGGTAATGTCTGTTTAC-CTTTA-T--C-----GACAAAC-TTCA--------ATATTTT----TGCT-GCTT-TTTATAAAT-------A-------------TG------------TAGAT-----TTA-GA---TG-A-TC--GA-----ATCGTT--AT-TTA--TT
gi|12 : ggggggTTCA-TCAT-TTCTTTT-AGA--A-ATTAT----CAT-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------TATAATAGCCTATTC-A--T-----------G------C----TTGA-TTTAAT---CAAT---ATACTAGAAGACAAA--------A-ATC--TGGTGTTATCAGGTAATGCCAGTTTAC-ATT-----------------------A--------TTATTTT----TTAT-GCTT-TCCATAAAT-------TATAGATGAAACT-TG------------TAGAG-----T-A-AG---TA-A-TC--AA-----TTTGTC--AA-TTA--TC------------AT--A-T-----C-ATCATATG-CATAAAAAAATAT---AAAACGCTTT-GTTgcatttctacactctttatttgtgttgtatta
gi|13 : caataAAT---ATA------GACACA--------A-AC---TGTTGTTATCGGGTACTGCCAGCTTAC-CTTTA-C--C-----GACAAAC-GGTA--------CTATTTT----TGCT-GCTG-TCCATTAAT-------T-------------TA------------TAGATGAAACTTGTAGATTTA-ATT---GA-----TTTGTC--AT-TTA--TTA-----A----TAT--A-T-----C-ATAATATG-CAT-------T-T---AA--CGCTTT-GTTCCACTGTCTTATA---TAACCGTACTCTTTATTTGCACAGCACT---ATAA
gi|14 : ----TCGA-TTTAGTTTACCAT---A-A------AATATA--------CCACC--TATTACCGTGGGGTAAAGAAATCTTAT-CATTG-C--A-----AACAAACAACCATTTATTTTTTGTTTT----TGCT---TGTTCCATAAAT-------C-------------TA------------TA
gi|15 : attcagataA--------TTATATT----TGCT-GCCG-TCTATAAAT-------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTAT--CGCTT--GTTCCACTGTCTTATA---T--C--CACTCTTT-TATG-ATTGTACT---ACAAGTGTaggttgaattccattgttagattcaatagtttaatttgcatatactaagtactattagattatattttaattaaa
gi|2 : ATGATTT---GCA-AAAGCG---TTAGCATT-ATAAAGACTAGT--AT--TTCTTTCTGTGTTCTTGCGTTAATA-ATGAAAACGTGT-ATCATTTCT-TTTT-TACCTGT-AGA--A-ATTA-----CACAAAT-GCT-AG-A-AA---------TATACA-T------T------------TTGATAGACTA---T------------TT-A--T-----------G------C----TTGA-TTTGGT---CAAT---AAA------GATACATGTGTACCA-ACC--TGTTATCATAAGGTAATGTAAATTTGT-C---A-C--A-----AACCAGT-ACTA--------GTATAGA----TGCC-GTTG-CTCAAAAAT-------TTATAGACAAATTCTG------------TAGAT-----TTA-AG---TA-A-TTACGATATATTTTATC--AT-TTtgtgtttagagaaccaagaactttgattccaattcttttgatttggtcataaaatatgtataaaaaa
gi|21 : atccgccatcgtacttttcatttggtaaacgtaaaaccagccatcaaactaaggtaaatgtacatcA--------TTATATT----TGCT-GCCG-TCTATAAAT-------T-------------------------------------------------------GA-----TTTGTC--AT-TTA--TT------------AT--A-T-----C-AACATATG-CAT-------T-TGTTAT--CGCTTT-GTTCCACTGTCTTATA---T--C--CACTCTTT-TATG-ATTGTACT---ACAAGTGTgaatgacttgtagaactttatctgagttttctttctttctataatccaatgtctatgttgtaaacattcaagagagataccggggtctccagtccgtttgattattcgtcgaagtatgttccaaacgatatatttcttctaggtacattattccttgataaaaaaatattcattc
gi|22 : TTAAACTATGATCT---CTA-TAAACG---C-AATAC------------ATCTAT--CT-------C-TTTATGTGGGGGAA-A------------ATAAT---T-TCTT-TTCTTGT-AGA--C-ATTAT----TGC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TTTTAAATAGCCTAT------------TC-A--C-----------G------C----TTGA-TTTAAT---CAAtgtgtttagggagaacaagaacttgattccaattc
gi|23 : aacCACTGTCTTACA---T--CCACGCTTTTTATTTGCATGTCACTATGATAATTGTatgg
gi|24 : TAGGAAAA-ATT----TGT-C-AACATT--T-TTTT-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-ACGC---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCAtgtgtttatggagaagagcaagaacttgtttctaagccgtttgaactggtcaataacatatgtttaaaacaaa
gi|27 : CATGAAT-------T-------------TG------------TAGAT-----TTA--------------------------CC--AT-TCA--TTA---TTCTTTATATGCA-T-----T-ATCATATA-CAG-------T-T---GA--CGCTTT-GTTCCACTGtg
gi|28 : CATTTTT-T--T-TTCTTGT-AGA--A-ATTAT----CAC-AAT-ACT-AG-A-CG---------CA---A-TC-----C------------TT------------T------------TG-A--TA----------G------C----TT-A-TTCA
gi|3 : atttgtcaaTATTTTGAACTATATTCT---ATA-TAA--T---C-AATATT--TTGA---TTGTCCATT-TT-------TGTTTATGtg
gi|4 : gaaaacatgcaactgtgttctgcgagacttgttactggtctttttgtttcaaacgcagtactatataagaaaactggttacttacaaaatagacgttatattgcatgtttaaaattcagagagaggtagtacctgataatttgctggacattgttcccaacacgcataaaaatgtatcacaatataatacccgtaatgaagagaagtttatcattccgaaatgtagattagaattattaaaaagtcatttgtacctgatgctataaaacaatggaattcattagggaagacacttccatcaaatcatttcgcgaaagcatcgatattattcctggaattccacccgcatatctgtttggcaaacgttatacaaataattcatagcaagc-TTTTTGT-ATGTTA-ATTA-----CTC-AAA-GCT-AG-A-AA---------TA---C-TAGTTGAC------------TA------------T------------TT-A--T-----------A------T----TTGA-TTTTATGT-CAAC---ACA------TATACA--------A--CC--AGCTATGATGGGGTGATAAAAATTTGT-CATTG-C--A-----AACCAAT-ACCA--------GAATTTTGCAGCACTAGCTG-TTCATAAAT-------T-------------C----------------AT-----TTG-CA---TAGA-T---AA------ATACC--AT-CTA---TC---TTA-----AT--A-TCACTAT-ATAGTATGTTAT-------T-T---GA----CCTT-GTTCCAC--TTTTATAATTT--GCA-ATTATTTATT
gi|5 : acaaggtgttaatttgGTTTGCAACTAT---CC---CTA-TTAACG---C-TATATT-ATTGA---TACTCCATTCTT-------TGTTTAGTTGGGAAAATAGAAAGATGTTTAATCATTTCCATTTT-TTCTTGTAAGA--AGATTAT----CAT--AT-GGT-AG-G-AA---------CG---ACT------C------------TTTAATAGCATA--T------------TCAA--T-----------G------T----TTGATTTTAAT---CAATATAATA------GATACA--------A-TCT--TTTTGTTATCAG---ATGTCAGTTTACTCTTTA-CCGA-----GACATAA-TTT---------TTAGTTT----TGC--GCTG-TCCATCAAT-------T-------------TACGGATGAAACTTTAGAT-----TTA-AA---GA-G-TA--GA-----TTTA----AT-TT---TTCAT-TTATTT-CAT--A-T-----TGATCATAGG-TATC------T-T---AA--GGCTTTAGTTCCA-TGTCTTGTA------CCACATCC----TTTGCATGACACT---atccaatgtacgcgacatattttttgtaatatttaaggagaggagtcaggatagtagagagaacctgtctccagtctggttcattttatactaaaatatacaagtgaatgtgtgttcaaaacatgtaattatattaattaatctgaattctttgtgaaatataattcattca
gi|6 : ataTAAACTATAATTTATCCTT-TACTCGTTAC-AACATT-TGTAA---AAGTCCTTC-TT-------TGGTTCTGTGGAAAAAAATGAAGATGTGT-ATCATATCT-TTTT-TGCTTGT-AAA--A-ATCATATAGCA--AAT-ACT-AG-A-AATGCTTTTTTTA---A-TTGA---C------------TA------------T------------TC-A--G-----------G------A----TTGA-TTTGGT---CAAC---ATA------GATATA--------G-ACCTATATTCCTAAGGGGAAATGAAAATTCAT-TTTTG-T--A-----AACTAAC-GCGA--------GTATTCT----TGCT-GCTG-TTCAC-AAT-------TCAA----------TA------------TACAT-----GTATAC---TA-A------A-----ACTATCATAT-TTAATTTCACTTTACTT-TCT--ATT-----T-ATC-TAT
gi|7 : tctgaccatacattttcatttgtaatattcgaattaccgttcatacTATTTTAAACTATGATCT---CTA-TAAACG---C-AATATT-GTTGA---TAGTCCAT--TT-------TGTTTATGTGGGAAAA-ATGAAGATGTTT-ATCATTTCT-TCTT-TTCTTGT-AGA--A-ATGAT----CAC-AAT-GCT-AG-A-AA---------CA---A-T------C------------TT------------T------------TC-A--T-----------G------C----TTGA-TTCAAT---CAAT---ATA------GATACA--------A-ATA--TGTTGTAATCGGGTAATGTCAGTTTAC-CTTTACC--AATTGCAACAAAT-TTTA--------TTATTTT----TGCT-GCTG-TCCATAAAT-------T-------------TG------------TAGAT-----TTA-AG---TA-ATT---GA-----TTTATC--AT-TCA--TTCT--TTATTT-TGT--A-T-----T-ATCATATA-CAG-------T-T---AA--CGCTTC-GTTCCACTGTCTTGTA---T--CAACAC----TATTTGCATGTCACT---GTAATTGTt
gi|8 : TTATTTTT-TGTTGTTGTTGC-AGA--A-ATTAT----CAT-AAT-GCT-TG-A-AA---------CA---A-T------C------------TT------------TGTAATAGCTTATTC-A--T-----------G------C----TTGA-TTTAAT---CA--------------------------------T--TGATGTTATCGGGTAATGTCGGTTTAC----------------AACAAAC-TGTA--------TTATTTT----TGCT-GCTG-TCCATAAATGTATAACT-------------TG------------TAGAT-----TTA-AG---TA-A-T---G--------TATT--ATATTA--CAT---TGATTT-T------C-----T-ATCATATG-CAT-------T-T---AA--CGCTTT-GTTCCACTGTCTTATA---T--CCACACTCTTTATTTGCATGGCACT---AT
gi|9 : atACTATGATTT---ACA-TAAGCG---C-AACATT-ATCGA---CAATCC----TT-------TG------------AA-ATGAAGATATGT-ATCATTTCT-TATT-TGCTTGT-AAG--A-ATTATA---CAA-AA--GCT-AG-A-GA---------TA---C-T------C------------TT------------T------------TT-AATT-----------GACTATTCAGAATTGA-TTTGAT---TAAC---ATA------GATATA--------C-ACC--TATTACTATGGGATAACGGAAATTTAA-CATTG-C--A-----AACCAAC-ACCA--------ATATTTT----TGCT-GCTG-TTCATAAAT-------T-------------TA------------TAGAT-----tgaagaactggtaagttgcgcaagaacttgtttcttatatccttttgacttggtcaataaaatatgttcaaaacc
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGATCAGTTCATTGTTCCAAGACGTACTCTCGAATTATTAAAAAAAATCTATTGTACCAGGTGCAGTAAAACAATGGAATTGGTTGAATGTAGAAGCAAGGACAGTCACCGCAGTCAACTCATTTTGCAAACATATAAATTCTAATGTTTCGAATCCGCCACCATATTTTTTTTATTT
Unaligned ( gi|17 ): TTCTGAATTGATTTGGTCAACATAGGTATACATGTATGCCTATTACTATGAGGTAAATATAAATGAAAAATCATTGTAATCATTGTAAACGAACACCAGTATTTGGCCTGTGCTATCCGCGCTTTTCTTCCGCTTTTTATTTATTTATTTTTTTTTTATTTATCTAT
Unaligned ( gi|18 ): TTTGTATTTACAATGATGTAGCAAACAAGTTACAAGTATGATCTACAATGCTACATGCAAGTTCATTTGTGTGCTAACAATGATCAACTTATGTACAAAATATCGATGCTAATATTGCATATTTTGTCTGGTAAACGTTACACCAATATAATTCATACCATG
Unaligned ( gi|19 ): ATTACTATGTACTATATTATCTAACCTTGCTCCACTTATTATTGCGAGTTTTTTTCAATACTCCAATGTGCATGACATATCAAGAGCGAGTAAGCTGAAAAAACATTTCTTCAGTCTCTTTGATTAAAATATGCTCAAAACAACAGAATTAATTGATTAA
Unaligned ( gi|20 ): TGGGATAATGAAAACTCATTACAAACCAACACCAGTATGTAAATTCACAGAGGAATCATGTATAGATTCAAATAATTACTATATACATGTACATATATACTAGTACTATATACTTAAACTCACTTTACTTGCTATTTATCTGTACATTGTA
Unaligned ( gi|25 ): GGGAGGGGGGGGAATAAAGATCTATTCTTTCCTAGCCATCAGAATGTCCTTAGTAAAAATCCTCTTAATAATTTCTTCAAG
Unaligned ( gi|26 ): GAATATCTTGTAAGATGTACATAAGAACTTGATTCTAATCCTTTTGACGCGGTCAATAAAATGTCTTAAAATTA
Unaligned ( gi|29 ): TTTTGCCGGCCTGCTTATACAATTCGTATCAGATGAATCATGTAGATTCAAATAATTGCTATATACTCACTA
Unaligned ( gi|30 ): AGGGAAGCCATTTCCATTAAATTATTTCACGAAAACATCGATGCTACT
Unaligned ( gi|31 ): TATATTTAATCTCACTTTACTTGCTATTTTTAAAACTTTTGT
Unaligned ( gi|32 ): AAAAAGCCATTTGTACCAGATGCTGTAAAACAATGGAATT