lowQualScore : 1 1 4444444444444 44444444444 2 11 2 2 2 1 5555555555555555555 1111 3333333333333333333 11111111111111 99999999999999999999999999999999999999999999999999999999999 2222222222222 333333333333333333333 111111111 11111 111111 5555555555555555 11111111 222222
lowQualScore : 8 0 1 8 6 3 1 0 7777777777777 4 33333333333 0 99 0 0 0 3 5 9999999999999999999 1 0000 66 5 8 3 4 2222222222222222222 4 55555555555555 3 7777 77 3 3 4 55 9999 55555555555555555555555555555555555555555555555555555555555 66 777 777 4444444444444 111111111111111111111 3 55 99 4 3 4 666666666 55 4 4 0 4 0 22222 3 3 88 3 3 111111 77777 3 77777 44 3 3 44 77 44 44 3 3 3 88888 3 4 1111111111111111 6 999999 3 6 6 3 44 3 3 44 77 3 3 7 44 3 5 9 4 4 7 4 33 3 555 7777 3 22222222 3 44 3 3 99 77 3 3 3 3 44 44 44 555 999999 3 44 3 44 3 44 2 2 2 99 2 2 2 2 77 2 2 2 2 2 4 2 2 88 22 77 2 2 5 2 3 3 3 3
lowQualScore : . . . . . . . . ............. . ........... . .. . . . . . ................... . .... .. . . . . ................... . .............. . .... .. . . . .. .... ........................................................... .. ... ... ............. ..................... . .. .. . . . ......... .. . . . . . ..... . . .. . . ...... ..... . ..... .. . . .. .. .. .. . . . ..... . . ................ . ...... . . . . .. . . .. .. . . . .. . . . . . . . .. . ... .... . ........ . .. . . .. .. . . . . .. .. .. ... ...... . .. . .. . .. . . . .. . . . . .. . . . . . . . . .. .. .. . . . . . . . .
lowQualScore : 0 8 0 0 0 6 4 0 6666666666666 0 55555555555 0 00 0 0 0 0 5 2222222222222222222 0 1111 99 0 0 3 0 3333333333333333333 0 99999999999999 3 1111 99 3 0 0 55 4444 66666666666666666666666666666666666666666666666666666666666 11 888 888 7777777777777 111111111111111111111 5 55 55 0 2 0 000000000 55 0 0 8 0 9 77777 6 6 66 5 6 777777 77777 1 00000 66 3 3 66 99 66 66 3 3 3 33333 3 4 8888888888888888 7 666666 3 7 7 3 66 3 3 66 99 3 3 4 66 3 0 8 0 0 9 0 99 6 111 6666 3 11111111 3 66 3 3 22 99 3 3 3 3 66 66 66 888 333333 3 66 3 66 1 66 9 9 9 00 5 5 4 4 99 4 4 4 4 4 7 4 4 99 99 99 9 9 7 9 1 1 1 1
consensus : TCTCAGATTTT-AATAATAGAATTAAC-TTCATCTGATCACGTGACTGTTGTTTACATNTTTGTCTAGACGGGAAA-AAATCTTGGTCCACCTCCTCCCCTTTCTACACCCCCAAANGTATATTTTGGTTTANNAGTTTTTTGTTTCATTACATCNTGTATGTTTTATTTGATTANGTTCTAATGGCGGACATTTCTAGTC-------TTAG--------TGGCATATTCT---AGTCC--CATCTT-TTTTGCC-ATTT-TAT-----GGT-----------TAAGT-AT--A-T-T-------TT-C----CATTA--TAT-GAGNT-GTA--GT----TAGGC-----------CA---------------TG---T-A-----------T-----------G--TGC---TTTT---TGAGTTAT------------TTTTT----T------------TT--ACAT--A--GGA-CAGTTG-TA---------TGT--A-TG-TTATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----T-TAT--TT-TTGGC--AT-T-TT--AATAA--AT--GC--TC-A-T-AAACA-----ACAC-AATTTC-CTATTA---CACN--CT-TTCAGTG-TTT------T-T-ATT-ATT-GGCA--T-T-TTAATAA--ATGC--TC-AT-AAACAACA--C-AATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TT--------GG-C--AT-TT-T--AATAA--ATGC-TC-A-T-AAACAA--CA--CAA--T---TTG---A--TTA-CTTT--T-A--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( gi|2 ) : TCTCAGATTTT-AATAATAGAATTAAC-TTCATCTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCGCCCACCTCCTCCCCTTTCTACACCTCCAAATGTATATTTTAG-TTAAAAG-TTTTTG-TTCATTACATCTTGTATG-TTTA-TTGA-TATGTTTTAATGGCGGACATTTCTAGTC-------TTAG--------TGGCATATTTT---AGTCC--CATCTT-TTTTGCC-ATTT-TAT-----GTT-----------TAAGT-AT--A-T-T-------TT-C----CATTA--TAT-GAGTT-GTA--GT----TAGGC-----------CA---------------TG---T-A-----------T-----------G--TGC---TTTT---TGAGTTAT------------TTTTT----T------------TT--ACAT--A--GGA-CAGTTG-TA---------TGT--A-TG-TTATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----T-TAT--TT-TTGGC--AT-T-TT--AATAA--AT--GC--TC-A-T-AAACA-----ACAC-AATTTC-CTATCA---CACA--CT-TACAGTG-TTT------T-T-ATT-ATT-GGCA--T-T-TTAATAA--ATGC--TC-AT-AAACAACA--C-AATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-A-TT---A-TT--------GG-C--AT-TT-T--AATAA--ATGC-TC-A-T-AAACAA--CA--CAA--T---TTG---A--TTA-CTTT--T-A--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCATCTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTTGGTCCACCTCCTCCCCTTTCTACACCTCCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAACATTTC-AGTC--------TAG--------T-GCATATTCT---GGTCC--CATCTT-TTTTGCC-CTTT-TAT-----G-G-----------TAAGT-ATTCT-T-T-------TC-C----CATTATTTAT-GAGTTGGTA--GT----TTAGC-----------CA---------------TGAGTT-ACTGGTAGTTGTT-----------G--TGC----TTT---TGAGTTAT------------TTTTTTTTAT------------TT--ACTC--A--GGA-CAGT--------------TGT--A-TG-CTA-T-TTCCT-T-----T-A--A--CTGTTC-AGTG-A-T--T-----T-TAT--TT-TTGGC--AT-T-TT--AATAA--AT--GCGTCC-A-T-AA--A-----ACAC-AATTTCACTATTA---CACT--GT-T-CAGTG-TTT------T-T-ATTAATT-GGCATTT-T-TTAATAA--ATGC--TC-AT-AAAAAACA--C-AATTT
gi|3 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttacTCTCAGATTTT-AATAATAGAATTAAC-TTCATCTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA-------------CCTCCCCTTTCTACACCCCCAAAAGTATATTTTG---TATCAG--TTTTG-TTCATTACATCATGTATG-TTTA-TTAA-TATATTCTAATGGCGGACATTTCTAGTCCTATATTCTAGTCCCACCTTGACATATTCT---AGTCC--CATCTT-TTTTGCC-AATT-TAT-----GAT-----------TAAGT-AT--ATT-T-------TT-C----CATTA--TAT-GAGGT-GTA--GT----TAGGC-----------CATGTATACTGGTAGT-TG---T-A-----------T-----------G--TGC---TTTT---TGAGTTA---------------TTA----T------------TT--ACAT--A--GGA-CATTTG-TA---------TGT--A-TG-GTATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----T-TAT--TA-TTGGC--AT-T-TT--AATAA--AT--GC--TC-A-T-AAACA-----ACAC-AATTTgattacttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|16 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTCTCAGATTTT-GACAATATATTTAAC-TTCATCTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|5 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacACTCT-AAAAAT----TTAAC-TAAATCTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAAT
gi|29 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtATTTT-AATAATAGAATTAAC-TTCATCTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGAatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : C-------TT-G--------TGGCATAGTCT---AGTCC--CATCTA-TTTTGCC-AGTT-TAT-----GGT-----------TAAGT-AT--A-TGT-------TT-C----CATTA--TAT-GAGGT-GTATAGT----TAGGC-----------CA---------------TG---T-A-----------TACTTGTATAATG--TGC---TTTT---TGAGTTAT------------ATTTT---------------------ACAT--A--GGA-CAGTTG-TA---------TAT--A-TG-TTATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----C-TAT-----------------------TAA--AT--TC--TC-A-T-AAACA-----ACAC-AATTT
gi|10 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaag-------TTTG--------TGGCATATTTTCTAAGTCCATCGTTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCAT--A-T-TCATTTTGTT-C----AATTA--TATTGAATG-GGA--GTAATTTAGGC-----------CG---------------TC---TGA-----------T-----------AATTAC---CTTT---T-AGTTATATGTCTGTTTTGTTTTT----TAGGTGGTTTTTATT--ACCT--A--GGA-CA-TTGAAA---------TGT--ATTT-TTATTGTGCCTAT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCT-TCTCACT-TAGGCTTAT-C-TTCGAATAAC-AT--GC--TC-ATT-ATACA-----AC-C-AATTTgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|9 : ttatttacaaag--------TGGCATATTCT---AGTCC--CATCTT-TTT-GCC-ATTT-TAT-----GGT-----------TAAGT-AT--A-T-T-------TTTC----CATTA--TAT-GAGGT-GTA--GT----TAGGC-----------CATGCATACTGGTAGT-TG---T-A-----------T-----------G--TGC---TTTT---TGAG---T------------TCTTT----T------------TA--ACAT--AGTGGA-CAATTG-TA---------TGT--A-TG-TTATT-T--CTAT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----T-T-T--TA-TTGGC--AT-T-CT--AATAA--AT--GC--TC-A-TAAAACA-----ACACAAATTTgagtattactcttgatt
gi|20 : caatacatgcattgttgaaatttacctGCATTTCTT-----TCC--CATCTTGTTTTGCC-A-TT-TAT-----GGT-----------TAAGT--T--A---T-------TT-C----CATTA--TAA-GAGtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
gi|23 : ctctggaggggcactttccctaacatggttattgacatttgtT---AGTCC--CATCTT-TTATCCC-AGTT-TAT-----AGT-----------TCAGT-ATC-A-T-T-------TT------CATTA--TGT--AGGT-GTA--
gi|6 : GTCC--CATCTT-TTTTGCC-ATTT-TAT-----GGT-----------TAAGT-AT--ATT-T-------TT-C----CATTA--TAT-aaatcataccagtttctggtatagta
gi|8 : tTTTGCC-ATTT-TAT-----GGC-----------TAAGT-AT--ATT-T-------TT-C----CATTAG-TAT-GAGTT-GTA--GT----TAGGC-----------CATGGTATACTGGTAGTTG---T-A-----------T-----------G--TGCTTTTTTT---TGAGTTAT------------TTTTT----T------------AC--ATATGGA--GGA-CAGTTG-TA---------TGT--A-TG-TTATT-TTCCTATA----T-ACAA--CTG-TC-AGTG-A-T--T-----T-TAT--TT-TTGGC--AT-T-TT--AATAA--AT--GC--TC-A-T-AAACA-----ACAC-AATTTC-CTATTA---CACT--GT-T-CAGTG-TTT------T-TAATT-ATTGGGCA--T-T-TTAATAA--ATGC--TC-AT-AAAC-ACA--C-AATTTtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgatattcaagccTTTGCCGATTT-TAT-----GGC-----------TAAGT-AT--A-T-T-------TT-TTTTTCATTA--TAT-GAGTT-GTA--GT----TAGGCATGTATACTGGTAGT-------------TG---T-A-----------T-----------G--TGC---TTTTGTTTGGGTTA--------------TTTT----T------------TT--ACAT--AT-GGAGCAGTTG-TA---------TGTAAA-TGTTTATT-TT-CTATAAAACT-AC-AATCTG-TC-AGTG-ATT--T-----T-TAT--TT-TTGGC--AT-TGTT--AATAA--AT--GC--TC-A-T-AAAC------TCAC-AATTTC-CTAT------ACA--CTGTTCAGTG-TTT------T-TAATT-A-T-GGCA--T-T-TTAATAA--ATGCG-TC-AT-AAAC-ACAGCC-AATTTgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|36 : gacaagtagatggctctagtgatattcagcc-T-T-------CT-C----CATAA--TAT-GTGGT-GTA--GT----TAGCC-----------CA---------------TG---T-A-----------T-----------gaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|17 : -C----CAT-G--TAT-AA-TT-GTA--GT----TATAG-----------CAGC-------------TG---T-A-----------T-----------G--CAC---TTAT---TGAGTCAT------------TTTT------------------------AT--A----------TC-TA---------GGC--A-TA-T-ATT-TTTCTAT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----T-TAT--Tactgata
gi|11 : ttaattacaagaggtgtaattatg---------------TG---T-G-----------T-----------G--TGC---TTTT---TGAGTTAT------------TTTTT----T------------TTTTAC-T--A--GGA-CAGTTG-TA---------TGT--A-TG-TTATT-TTCCTAC-----T-AC-A--ATGTTT-AATG-A----T-----T-TAT--TTATTGGC--AA-T-TT--TATAAGTAT--GC--TG-A-T-AAAC------ACAC-AATTT
gi|12 : aggccatgtatactggtagtT----T------------TT--ACTC--A--CGA-CAATTG-TAATTATATAACGT--A-TG-T-ATG-TACATGT-----T-AC-A--CTGTGT-ATTT-ATT--T-----T-TGT--TG-TTGGT--AA-T-TT--AGTAG--ATACAC--TC-A-C----CA-----ACAT-GATTTgaattactttatttactttgggcaaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|19 : ttttcattatataagatgtattggTAT-----T-AT-A--CC--CC-AGTG-T-T--T-----TCTAT--AT-T--GC--ATAT-TT--AATAA--AT--GC--TCCA-T-AAACA-----ACAC-AATTTgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|6 : ttTG-T-T--T-----T-TAG--TA-TTGGC--AT-T-TT--AATAA--AT--GC--TC-A-T-AAACA-----ACAC-AATTTgaatttgcttttattctttgcggccaaaaaacaaagcagagtaga
gi|1 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt-----T-TAT--TT-TT------T-T-TT--ATT-----T--AC--TC-A---GGACAGTTGTATGC-TATTTC-CT-TTA------A--CTGTTCAGTG-ATT------T-T-ATT-TTT-GGCA--T-T-TTAATAA--ATGCGTCC-AT-AAA--ACA--C-AATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---AATT--------GG-C--AT-TT-TTTAATAA--ATGC-TC-A-T-AAAAAA--CA--CAA--T---TTG---A--TTA-CTTT--T-AATTT-T--CTT-G-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-AC-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagATTTT-CTATAAAACTACAATCT-GTCAGTGATTT------T-T-ATT-TTT-GGCA--T-TGTTAATAA--ATGC--TC-AT-AAACT-CA--C-AATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAA-TT---A--T--------GG-C--AT-TT-T--AATAA--ATGCGTC-A-T-AAAC-A--CAGCCAA--T---TTGA--A--TTGTCTTTTAT-A--TT-T--CTT-G-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-ATTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGat
gi|3 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttTTTC-CTATTA---CACT--GT-T-CAGTG-ATT------T-T-ATT-ATT-GGCA--T-T-TTAATAA--ATGC--TC-AT-AAACAACA--C-AATTTatggtta
gi|8 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatTTTC-CTAT-A---TACAA-CT-GTCAGTG-ATT------T-T-ATT-TTT-GGCA--T-T-TTAATAA--ATGC--TC-AT-AAACAACA--C-AATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-AATT---A-TT--------GGGC--AT-TT-T--AATAA--ATGC-TC-A-T-AAAC-A--CA--CAA--T---TTGA--A--TTG-CTTT--T-A---T-T--CTT-G-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A-TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|5 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTTTC-CTATTA---CACT--GT-T-CAGTGATGT------C-T-ATT-A-------------------A--ATTC--TC-AT-AAACAACA--C-AATTTatggta
gi|9 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatTTT-CTATTA----ACAG-CTGTTCAGTG-ATT------T-T--TT-ATT-GGCA--T-T-CTAATAA--ATGC--TC-ATAAAACAACA--CAAATTTgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|19 : caatacatgcattgttgaaatttaccttggcatattctagtcccatctttttgccattttatggttaagtatatttttccattatatgaggtgtagttaggccatgcatactggtagttgtatgtgctttttgagttctttttaacatagtggacaattgtatgtatgttaTATTA---TACC--C----CAGTG-TTT------TCT-AT--ATT-G-CA--TAT-TTAATAA--ATGC--TCCAT-AAACAACA--C-AATTTtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
gi|11 : tt-TACAATG-TTTAATGATT-T-ATTTATT-GGCA--A-T-TTTATAAGTATGC--TG-AT-AAAC-ACA--C-AATTTgaatttgcttttattctttgcggccaaaaaacaaagcagagtaga
gi|6 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttattttcctacTG-TTT------T-T-AGT-ATT-GGCA--T-T-TTAATAA--ATGC--TC-AT-AAACAACA--C-AATTTgaattactttatttactttgggcaaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|3 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-A-TT---A-TT--------GG-C--AT-TT-T--AATAA--ATGC-TC-A-T-AAACAA--CA--CAA--T---TTG---AA-TTA-CTTT--T-A--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|5 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-A-T---------------------------------TAA--ATTC-TC-A-T-AAACAA--CA--CAA--T---TTGA--A--TTA-CTCT--T-A--TG-C--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAatga
gi|11 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-T-TT---A-TT--------GG-C--AA-TT-T--TATAAGTATGC-TG-A-T-AAACA---CA--CAA--T---TTG---AA-TTA-CTTT----A--TT-TACTTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-ACTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACG
gi|9 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T---TT---A-TT--------GG-C--AT-TC-T--AATAA--ATGC-TC-A-TAAAACAA--CA--CAAATT---TTG---A--ATA-C-TT--T-A--TT-T--CTT---GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAACTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGatg
gi|10 : caatacatgcattgttgaaatttaccttggcatattctagtcccatctttttgccattttatggttaagtatatttttccattatatgaggtgtagttaggccatgcatactggtagttgtatgtgctttttgagttctttttaacatagtggacaattgtatgtatgttaC-CTATTA-CA-TTGTTCAAGTG-TATT-A-A-TC---C-TTCTCACTTAGG-CTTAT-CT-TCGAATAAC-ATGC-TC-ATT-ATACAA--C---CAA--T---TTGAGTA--TTA-CTCT--TGA--TT-atggt
gi|19 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgTATTA-TA-CC--CCA-GTG-TTTTCT-A-T----A-TT--------G--C--ATATT-T--AATAA--ATGC-TCCA-T-AAACAA--CA--CAA--T---TTG---AATTTG-CTTT--T-A--TT-C--TTT-GCGG-CC-AAAAA-ACA-AAGCA-GAGT-A--GA
gi|4 : ttA-TA-CTATT----TG-GTTT-T-A-CTTACA-TT--------GG-C--TT-CTGT--AATAA--ATGC-TC-T-T-TTTCAATTCA--AAG--TATGTTGCT-A--TTA-CATG--T-A--TC-T--ATT-G-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-ACTTGA
gi|6 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccatttttagtcatctttgtttattatggtgtatatatacagttttcatgattgctctatattaattagggcacatttcagatatgctgttattgtattgtatgtaccttttcgattgttctcatttttcatatgacaggtgtatcaagacaatactgTG-TTTT-T-A-GT---A-TT--------GG-C--AT-TT-T--AATAA--ATGC-TC-A-T-AAACAA--CA--CAA--T---TTG---AA-TTG-CTTT--T-A--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaggaaaacagtttatggtagaaaacat
gi|15 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt-TT--------GG-C--AT-TG-T--ACTAA--ATGC-TC-T-T-TA-CAA--CA--TAC--T---TTGG--A--CTA-CTAT--T-G--TTAT--CTTTA-GG-C--ACAAA-ACA---GTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-ACTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|22 : -T--CTT-G-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|28 : TT-G-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-ACTTAATCACG-TC-TG--T-GT-GTTG-T-atggtat
gi|24 : -G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-ATTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG--CTTGATatgt
gi|18 : AATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-ACTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|26 : tttcaattgtcctgattatataggcataagatgat-GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-ACTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGatggtata
gi|31 : AC-T-TT-GG-T-AG-AA-AG-ACTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatg
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC
Alignments
lowQualScore : 1 11111 2 1 333333333333333333333 11111111111 11111111111111 7777777777777777777777777777 22222222222222222222222 111111111 111111111 11111 22222222222222 1 11 22222
lowQualScore : 6 6 9 1 8 0 999 0 1 22222 22 7 7 7 7 77 7 7 3 7 1 0 7 3 1 0 777 55 000000000000000000000 3 7 3 77777777777 3 99999 55555555555555 6666 77 3 555 1 3 44 3 1111111111111111111111111111 666 55555555555555555555555 777 777 777 666666666 2 55 88 3 2 3 444444444 88 3 3 22222 3 3 88 3 7 3 88 88888 3 44444 55 3 55 88 55 55 444 99999 3 5 44444444444444 5 5 0 99 5 66 5 66 9 66 4 3 3 3 3 3 555 555 3 3 3 3 44 44 44 3 3 3 44 44 44 555 44444 3 44 44 2 33 2 2 2 77 2 2 2 2 77 2 2 2 2 2 4 2 2 2 2 2 77 2 2 5 2 2 2 2 2
lowQualScore : . . . . . . ... . . ..... .. . . . . .. . . . . . . . . . . ... .. ..................... . . . ........... . ..... .............. .... .. . ... . . .. . ............................ ... ....................... ... ... ... ......... . .. .. . . . ......... .. . . ..... . . .. . . . .. ..... . ..... .. . .. .. .. .. ... ..... . . .............. . . . .. . .. . .. . .. . . . . . . ... ... . . . . .. .. .. . . . .. .. .. ... ..... . .. .. . .. . . . .. . . . . .. . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 7 7 5 0 0 8 000 7 0 77777 00 3 3 3 3 77 3 3 7 3 0 7 3 8 7 7 000 00 999999999999999999999 6 3 6 33333333333 6 11111 66666666666666 5555 33 1 888 0 6 66 6 7777777777777777777777777777 444 55555555555555555555555 000 000 000 222222222 4 00 66 6 0 6 555555555 66 6 6 77777 6 6 66 6 3 6 66 33333 3 66666 00 6 00 66 00 00 111 11111 6 7 33333333333333 0 0 0 00 0 99 0 99 5 99 0 3 6 6 3 3 222 888 1 1 1 1 22 22 22 1 1 1 22 22 22 444 11111 1 22 22 9 99 5 5 5 99 2 2 1 1 11 1 1 1 1 1 2 1 1 1 7 7 33 7 7 3 7 9 9 9 9
consensus : TCTCAGATTTT-AATAATAGAATTAACTT-CATCTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTTTCTACACCTCCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTATT-GATTATGTTTTAATGGCGGACATTTCTAGTCTTAGTGGCATATTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T-T-------TTC----CATTA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---TA-----------T-----------GT---GC---TTTT---TGAGTTATTTTTT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT-TTGGC--ATT-TT--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-NTT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( family-1155 ) : TCTCAGATTTT-AATAATAGAATTAACTT-CATCTGATCACGTGACTGTTGTTTACATNTTTGTCTAGACGGGAAA-AAATCTTGGTCCACCTCCTCCCCTTTCTACACCCCCAAANGTATATTTTGGTTTANNAGTTTTTTGTTTCATTACATCNTGTATGTTTTATTTGATTANGTTCTAATGGCGGACATTTCTAGTCTTAGTGGCATATTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T-T-------TTC----CATTA--TA-TGA---GNT-GTA--G-TTAGGC-----------CA---------------TG---TA-----------T-----------GT---GC---TTTT---TGAGTTATTTTTT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT-TTGGC--ATT-TT--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-ATT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCATCTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTTGGTCCACCTCCTCCCCTTTCTACACCTCCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAACATTTC-AGTC-TAGT-GCATATTCT---GGTCC--CA---------------------TCTT-TTTTGCC-CTTT-TAT-----------GG--TAAGT-----ATTCT-T-T-------TCC----CATTATTTA-TGA---GTTGGTA--G-TTTAGC-----------CA---------------TGAGTTACTGGTAGTTGTT-----------GT---GC----TTT---TGAGTTATTTTTTTTTATTT--ACTC--A--GGA-CAGT--------------TGTA--TGCT-A-T-TTCCT-T-----T-A--A--CTGTTC-AGTG-A-T--T-----TT-AT--TT-TTGGC--ATT-TT--AATAA--AT--GCGTCCA-T-AA--A-----ACAC-AATTTCACTAT-----TACACT-G-TTC-AGTG-TTTTT-ATTAATT-GGCATTTT-TTAATAAATGC--TCATAAAAAACA--CAATTT---GATTA-C
gi|1 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttac-----TT-AT--TT-TT------TT-TT--ATT-----T--AC--TCA---GGACAGTTGTATGC-TATTTC-CT-T-----TA---ACTGTTC-AGTG-ATTTT-ATT-TTT-GGCA--TT-TTAATAAATGCGTCCATAAA--ACA--CAATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---AATTGG-CAT-TT-TTTAATAA--AT--GC-TC-AT-AAAAAA--CA--CAA--T---TTG--A--TTA-CTTT--TAATTT-T--CTT-G-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-A-C-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|10 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagTTTGTGGCATATTTTCTAAGTCCATCG---------------------TTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCAT--A-T-TCATTTTGTTC----AATTA--TATTGAATGGGA-GTA--ATTTAGGC-----------CG---------------Tat
gi|10 : ttatttacaaagTA--G-TTA--------------TA---------------TG---TC-----------T-----------GTTTTGT---TTTT---T-AGGTGGTTTTT----ATT--ACCT--A--GGA-CA-TTGAAA---------TGTAT-TTTT-ATTGTGCCTAT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCTT-CTCACT-TAGGCTTATC-TTCGAATAAC-AT--GC--TCATT-ATACA-----AC-C-AATTTctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgcctattacattgttcaagtgtattaatccttctcacttaggcttatcttcgaataacatgctcattatacaaccaatttgagtattactcttgatt
gi|11 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttt---------------TG---TG-----------T-----------GT---GC---TTTT---TGAGTTATTTTTT----TTTTTAC-T--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAC-----T-AC-A--ATGTTT-AATG-A----T-----TT-AT--TTATTGGC--AAT-TT--TATAAGTAT--GC--TGA-T-AAAC------ACAC-AATTTgagtattactcttgatt
gi|11 : aggccatgtatactggtagtTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-T-TT---A-TTGG-CAA-TT-T--TATAAGTAT--GC-TG-AT-AAACA---CA--CAA--T---TTG--AA-TTA-CTTT---A--TT-TACTTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-A-CTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACGgaattactttatttactttgggcaaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|12 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatT----TTT--ACTC--A--CGA-CAATTG-TAATTATATAACGTA--TGT--ATG-TACATGT-----T-AC-A--CTGTGT-ATTT-ATT--T-----TT-GT--TG-TTGGT--AAT-TT--AGTAG--ATACAC--TCA-C----CA-----ACAT-GATTTatg
gi|12 : ttttcattatataagatgtattggTGTTA-CA-CTGTGTATTTA-TTTT-T-G-TT---G-TTGG-TAA-TT-T--AGTAG--ATACAC-TC-AC----CAA--CA--TGA--T---TTGA-A--TGA-TTCT--TA--TC-T--TTT-T-GC-C--TAAA----A-AAGCA-AAGA-A--GTC-A-TT-GA-T-AG-GA-AT-ATTTTAATgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|15 : ttttcattatataagatgtattggttttactcacgacaattgtaattatataacgtatgtatgtaca-TTGG-CAT-TG-T--ACTAA--AT--GC-TC-TT-TA-CAA--CA--TAC--T---TTGG-A--CTA-CTAT--TG--TTAT--CTTTA-GG-C--ACAAA-ACA---GTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-A-CTatcaaagtttgttttaaacagaaatgattg
gi|16 : TCTCAGATTTT-GACAATATATTTAACTT-CATCTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|17 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacC----CAT-G--TA-TAA----TT-GTA--G-TTATAG-----------CAGC-------------TG---TA-----------T-----------GC---AC---TTAT---TGAGTCATTTTT------------AT--A----------TC-TA---------GGCA--TAT--ATT-TTTCTAT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----TT-AT--T
gi|18 : ttaattacaagaggtgtaattatgAATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACG
gi|19 : tttcaattgtcctgattatataggcataagatgatTATTA-TA-CC--CCA-GTG-TTTTCT-A-T----A-TTG--CATATT-T--AATAA--AT--GC-TCCAT-AAACAA--CA--CAA--T---TTG--AATTTG-CTTT--TA--TT-C--TTT-GCGG-CC-AAAAA-ACA-AAGCA-GAGT-A--GAatggtata
gi|2 : ttTCTCAGATTTT-AATAATAGAATTAACTT-CATCTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCGCCCACCTCCTCCCCTTTCTACACCTCCAAATGTATATTTTAGTT-AAAAGTTTTT-GTT-CATTACATCTTGTATGTTT-ATT-GAT-ATGTTTTAATGGCGGACATTTCTAGTCTTAGTGGCATATTTT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GTT-TAAGT-----AT--A-T-T-------TTC----CATTA--TA-TGA---GTT-GTA--G-TTAGGC-----------CA---------------TG---TA-----------T-----------GT---GC---TTTT---TGAGTTATTTTTT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT-TTGGC--ATT-TT--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----CACACACT-TAC-AGTG-TTTTT-ATT-ATT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|20 : GCAT-TTCT----TTCC--CA---------------------TCTTGTTTTGCC-ATTT--AT-----------GGT-TAAGT------T--A---T-------TTC----CATTA--TA-AGA---G
gi|22 : ctctggaggggcactttccctaacatggttattgacatttgt-T--CTT-G-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|23 : T---AGTCC--CA---------------------TCTT-TTATCCC-AGTT-TAT-----------AGT-TCAGT-----ATC-A-T-T-------TT-----CATTA--TG-T-A---GGT-GTA--atggtat
gi|24 : -G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-A-TTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaaatcataccagtttctggtatagta
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG---CTTGATatgt
gi|26 : -GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-A-CTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|28 : TT-G-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-atg
gi|29 : ATTTT-AATAATAGAATTAACTT-CATCTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGA
gi|3 : TCTCAGATTTT-AATAATAGAATTAACTT-CATCTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA-------------CCTCCCCTTTCTACACCCCCAAAAGTATATTTTG---TATCAG--TTTTG-TTCATTACATCATGTATG-TTTATT--AATATATTCTAATGGCGGACATTTCTAGTCCT------ATATTCT---AGTCC--CACCTTGACATATTCTAGTCCCATCTT-TTTTGCC-AATT-TAT-----------GAT-TAAGT-----AT--ATT-T-------TTC----CATTA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGTATACTGGTAGT-TG---TA-----------T-----------GT---GC---TTTT---TGAGTTA---TTA----TTT--ACAT--A--GGA-CATTTG-TA---------TGTA--TGGT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TA-TTGGC--ATT-TT--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTT
gi|3 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|31 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatga
gi|36 : -T-T-------CTC----CATAA--TA-TGT---GGT-GTA--G-TTAGCC-----------CA---------------TG---TA-----------T-----------atggtat
gi|4 : ACCTT-TTCGATTG-TTCTC-ATT-TTT---CA--TA-T-GACAGGTGTA-TCA-AGACAATA--C----------TGA-TA-CTATT----TG-GTTT-T-A-CTTACA-TTGG-CTT-CTGT--AATAA--AT--GC-TC-TT-TTTCAATTCA--AAG--TATGTTGCTA--TTA-CATG--TA--TC-T--ATT-G-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-A-CTTGAactgata
gi|5 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccatttttagtcatctttgtttattatggtgtatatatacagttttcatgattgctctatattaattagggcacatttcagatatgctgttattgtattgtatgtACTCT-AAAAAT----TTAACTA-AATCTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAATaggaaaacagtttatggtagaaaacat
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtCTT-GTGGCATAGTCT---AGTCC--CA---------------------TCTA-TTTTGCC-AGTT-TAT-----------GGT-TAAGT-----AT--A-TGT-------TTC----CATTA--TA-TGA---GGT-GTATAG-TTAGGC-----------CA---------------TG---TA-----------TACTTGTATAATGT---GC---TTTT---TGAGTTATATTTT---------ACAT--A--GGA-CAGTTG-TA---------TATA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----CT-AT----------------------TAA--AT--TC--TCA-T-AAACA-----ACAC-AATTTatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-A-T-----------------------TAA--AT--TC-TC-AT-AAACAA--CA--CAA--T---TTGA-A--TTA-CTCT--TA--TG-C--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|6 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT-T-------TTC----CATTA--TA-T
gi|6 : tTG-TTTT-T-A-GT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTG-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAGTG--ATATTC----AGCC--------------------------------TTTGCCGATTT-TAT-----------GGC-TAAGT-----AT--A-T-T-------TTTTTTTCATTA--TA-TGA---GTT-GTA--G-TTAGGCATGTATACTGGTAGT-------------TG---TA-----------T-----------GT---GC---TTTTGTTTGGGTTATTTTTT----T----ACAT--AT-GGAGCAGTTG-TA---------TGTAAATGTTTATT-TTC-TATAAAACT-AC-AATCTGT-C-AGTG-A-T--T-----TTTAT--TT-TTGGC--ATTGTT--AATAA--AT--GC--TCA-T-AAACT------CAC-AATTTC-CTAT--------ACACTGTTC-AGTG-TTTTTAATT-A-T-GGCA--TT-TTAATAAATGCG-TCATAAAC-ACAGCCAATTTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : gacaagtagatggctcATTTT-CTATAAAACTACAATCT-GTC-AGTGATTTTT-ATT-TTT-GGCA--TTGTTAATAAATGC--TCATAAACT-CA--CAATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAA-TT---A--TGG-CAT-TT-T--AATAA--AT--GCGTC-AT-AAAC-A--CAGCCAA--T---TTGA-A--TTGTCTTTTATA--TT-T--CTT-G-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-A-TTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGgaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|8 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttATATTCA---AGCC--------------------------------TTTGCC-ATTT-TAT-----------GGC-TAAGT-----AT--ATT-T-------TTC----CATTAG-TA-TGA---GTT-GTA--G-TTAGGC-----------CATGGTATACTGGTAGTTG---TA-----------T-----------GT---GCTTTTTTT---TGAGTTATTTTTT----TAC--ATATGGA--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTATA----T-ACAA--CTG-TC-AGTG-A-T--T-----TT-AT--TT-TTGGC--ATT-TT--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACT-G-TTC-AGTG-TTTTTAATT-ATTGGGCA--TT-TTAATAAATGC--TCATAAAC-ACA--CAATTTatggtta
gi|8 : tgTTTC-CTATA----TACA-ACT-GTC-AGTG-ATTTT-ATT-TTT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-AATT---A-TTGGGCAT-TT-T--AATAA--AT--GC-TC-AT-AAAC-A--CA--CAA--T---TTGA-A--TTG-CTTT--TA---T-T--CTT-G-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A--TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|9 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTGGCATATTCT---AGTCC--CA---------------------TC-T-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT-T-------TTC----CATTA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGCATACTGGTAGT-TG---TA-----------T-----------GT---GC---TTTT---TGAG---TTCTTT----TTA--ACAT--AGTGGA-CAATTG-TA---------TGTA--TGTT-ATT-T--CTAT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----TT--T--TA-TTGGC--ATT-CT--AATAA--AT--GC--TCA-TAAAACA-----ACACAAATTTatggta
gi|9 : caatacatgcattgttgaaatttacctTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T---TT---A-TTGG-CAT-TC-T--AATAA--AT--GC-TC-ATAAAACAA--CA--CAAATT---TTG--A--ATA-C-TT--TA--TT-T--CTT---GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAA-CTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC
Alignments
lowQualScore : 11111 11 333333333 11 2222 333333333333 222 1 1 222222222222222222222 11111111111 2222222222222222222 11111111 11111111111 88888888888888888888888888888888888888888888888888888888 111111111 111111111 11111 22222222222222 11 22222
lowQualScore : 5 0 5 44444 22 3 1 6 3 999999999 33 1111 3 999 3 000000000000 3 2 2 9 222 0 66 2 0 7 2 1 2 2 4 666 555 888888888888888888888 3 6 3 55555555555 3 88888 1111111111111111111 6666 00000000 66 2 555 0 3 33 3 44444444444 22222222222222222222222222222222222222222222222222222222 666 666 666 55 222222222 1 44 77 3 1 3 333333333 77 33 3 1 11111 6 3 77 3 6 3 77 77777 3 44 999 44 3 3 44 77 44 44 444 99999 3 5 44444444444444 5 5 5 66 5 66 5 66 9 66 4 3 3 3 3 3 555 555 3 3 3 3 44 44 44 3 3 3 44 44 44 555 44444 3 44 44 2 33 2 2 2 77 2 2 2 2 77 2 2 2 2 2 4 2 2 2 2 2 77 2 2 5 2 2 2 2 2
lowQualScore : . . . ..... .. . . . . ......... .. .... . ... . ............ . . . . ... . .. . . . . . . . . ... ... ..................... . . . ........... . ..... ................... .... ........ .. . ... . . .. . ........... ........................................................ ... ... ... .. ......... . .. .. . . . ......... .. .. . . ..... . . .. . . . .. ..... . .. ... .. . . .. .. .. .. ... ..... . . .............. . . . .. . .. . .. . .. . . . . . . ... ... . . . . .. .. .. . . . .. .. .. ... ..... . .. .. . .. . . . .. . . . . .. . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 7 7 7 33333 11 4 9 7 5 000000000 88 2222 2 555 2 555555555555 2 5 5 2 555 2 55 5 0 0 5 7 4 5 0 444 000 333333333333333333333 3 7 3 88888888888 3 33333 1111111111111111111 5555 44444444 88 9 444 4 1 99 1 66666666666 33333333333333333333333333333333333333333333333333333333 444 444 444 00 666666666 4 66 99 3 0 3 333333333 99 88 3 2 77777 7 3 99 3 7 3 99 77777 1 22 222 66 3 3 66 99 66 66 111 11111 6 7 33333333333333 0 0 0 00 0 99 0 99 5 99 0 3 6 6 3 3 222 888 1 1 1 1 22 22 22 1 1 1 22 22 22 444 11111 1 22 22 9 99 5 5 5 99 2 2 1 1 11 1 1 1 1 1 2 1 1 1 7 7 33 7 7 3 7 9 9 9 9
consensus : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( family-1155 ) : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-NTT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCAT-----CTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTTGGTCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAAC-ATTTC-AGTC-TAGT-GCATA-TTCT---GGTCC--CA---------------------TCTT-TTTTGCC-CTTT-TAT-----------GG--TAAGT-----ATTCT-T------T-------TCC----CAT--------TATTTA-TGA---GTTGGTA--G-TTTAGC-----------CA---------------TGAGTT-----------ACTGGTAGTTGTT-----------GT---GC----TTT---TGAGTTATTTT--TTTTTATTT--ACTC--A--GGA-CAGT--------------TGTA--TGCT-A-T-TTCCT-T-----T-A--A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GCGTCCA-T-AA--A-----ACAC-AATTTCACTAT-----TACACT-G-TTC-AGTG-TTTTT-ATTAATT-GGCATTTT-TTAATAAATGC--TCATAAAAAACA--CAATTT---GATTA-C
gi|1 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttac-----TT-AT--TT---TT------TT-T-T--ATT-----T--AC--TCA---GGACAGTTGTATGC-TATTTC-CT-T-----TA---ACTGTTC-AGTG-ATTTT-ATT-TTT-GGCA--TT-TTAATAAATGCGTCCATAAA--ACA--CAATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---AATTGG-CAT-TT-TTTAATAA--AT--GC-TC-AT-AAAAAA--CA--CAA--T---TTG--A--TTA-CTTT--TAATTT-T--CTT-G-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-A-C-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|10 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagTTTGTGGCATA-TTTTCTAAGTCCATCG---------------------TTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCAT--A-T------TCATTTTGTTC----AAT--------TA--TATTGAATGGGA-GTA--ATTTAGGC-----------CG---------------Tat
gi|10 : ttatttacaaagTA--G-TTA--------------TA---------------TG---T-----------C-----------T-----------GTTTTGT---TTTT---T-AGGTGGTTT--TT----ATT--ACCT--A--GGA-CA-TTGAAA---------TGTAT-TTTT-ATTGTGCCTAT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCTT-CTCACT---TAGGCTTATC-T-TCGAATAAC-AT--GC--TCATT-ATACA-----AC-C-AATTTctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgcctattacattgttcaagtgtattaatccttctcacttaggcttatcttcgaataacatgctcattatacaaccaatttgagtattactcttgatt
gi|11 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttt---------------TG---T-----------G-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTTTTAC-T--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAC-----T-AC-A--ATGTTT-AATG-A----T-----TT-AT--TTA--TTGGC--AAT-T-T--TATAAGTAT--GC--TGA-T-AAAC------ACAC-AATTTgagtattactcttgatt
gi|11 : aggccatgtatactggtagtTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-T-TT---A-TTGG-CAA-TT-T--TATAAGTAT--GC-TG-AT-AAACA---CA--CAA--T---TTG--AA-TTA-CTTT---A--TT-TACTTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-A-CTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACGgaattactttatttactttgggcaaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|12 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatT----TTT--ACTC--A--CGA-CAATTG-TAATTATATAACGTA--TGT--ATG-TACATGT-----T-AC-A--CTGTGT-ATTT-ATT--T-----TT-GT--TG---TTGGT--AAT-T-T--AGTAG--ATACAC--TCA-C----CA-----ACAT-GATTTatg
gi|12 : ttttcattatataagatgtattggTGTTA-CA-CTGTGTATTTA-TTTT-T-G-TT---G-TTGG-TAA-TT-T--AGTAG--ATACAC-TC-AC----CAA--CA--TGA--T---TTGA-A--TGA-TTCT--TA--TC-T--TTT-T-GC-C--TAAA----A-AAGCA-AAGA-A--GTC-A-TT-GA-T-AG-GA-AT-ATTTTAATgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|15 : ttttcattatataagatgtattggttttactcacgacaattgtaattatataacgtatgtatgtaca-TTGG-CAT-TG-T--ACTAA--AT--GC-TC-TT-TA-CAA--CA--TAC--T---TTGG-A--CTA-CTAT--TG--TTAT--CTTTA-GG-C--ACAAA-ACA---GTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-A-CTatcaaagtttgttttaaacagaaatgattg
gi|16 : TCTCAGATTTT-GACAATATATTTAACTT-CAT-----CTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|17 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacAT--------TA--CA-AGA---GGT-GTA--A-TTATGC-----------CA---------------TG---T-----------A-----------T-----------
gi|17 : ttaT-GTA--G-TTATAG-----------CAGC-------------TG---T-----------A-----------T-----------GC---AC---TTAT---TGAGTCATTTT--T------------AT--A----------TC-TA---------GGCA--TAT--ATT-TTTCTAT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----TT-AT--Taattgtagttatagcagctgtatgcacttattgagtcatttttatatctaggcatatatttttctattacattgcccagtgaatggtttatt
gi|18 : ttaattacaagaggtgtaattatgccatgtataatAATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACG
gi|19 : tttcaattgtcctgattatataggcataagatgatTATTA-TA-CC--CCA-GTG-TTTTCT-A-T----A-TTG--CATATT-T--AATAA--AT--GC-TCCAT-AAACAA--CA--CAA--T---TTG--AATTTG-CTTT--TA--TT-C--TTT-GCGG-CC-AAAAA-ACA-AAGCA-GAGT-A--GAatggtata
gi|2 : ttTCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCGCCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTT-AAAAGTTTTT-GTT-CATTACATCTTGTATGTTT-A-TTGAT-ATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTTT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GTT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GTT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----CACACACT-TAC-AGTG-TTTTT-ATT-ATT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|20 : GCAT--TTCT----TTCC--CA---------------------TCTTGTTTTGCC-ATTT--AT-----------GGT-TAAGT------T--A--------T-------TTC----CAT--------TA--TA-AGA---G
gi|22 : ctctggaggggcactttccctaacatggttattgacatttgt-T--CTT-G-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|23 : T---AGTCC--CA---------------------TCTT-TTATCCC-AGTT-TAT-----------AGT-TCAGT-----ATC-A-T------T-------TT-----CAT--------TA--TG-T-A---GGT-GTA--atggtat
gi|24 : -G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-A-TTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaaatcataccagtttctggtatagta
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG---CTTGATatgt
gi|26 : -GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-A-CTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|28 : TT-G-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-atg
gi|29 : ATTTT-AATAATAGAATTAACTT-CAT-----CTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGA
gi|3 : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA-------------CCTCCCCTT--TCTACACCC----CCAAAAGTATATTTT-GTATCAG----TTTTG-TTCATTACATCATGTATG-TTTA-TTAA-TATATTCTAATGGCGGAC-ATTTCTAGTCCT------ATA-TTCT---AGTCC--CACCTTGACATATTCTAGTCCCATCTT-TTTTGCC-AATT-TAT-----------GAT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGTATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTA---T--TA----TTT--ACAT--A--GGA-CATTTG-TA---------TGTA--TGGT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TA---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTT
gi|3 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|31 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatga
gi|36 : -T------T-------CTC----CAT--------AA--TA-TGT---GGT-GTA--G-TTAGCC-----------CA---------------TG---T-----------A-----------T-----------atggtat
gi|4 : TCTCA-ATTTT-CATTGTACAA---ACTC-CATGACGGTTGATCACGTGATCGTTGTT--------------GAAGGGAGA-AGAATTT-G---AC--CCTCCCCTTCATCCACACATTTTGCTGAATGTA-ATC----TTTAAA----------TAC-CTACTCCTT---TGGTT------ATTATGTTTTAAT--CAAACTAGTCCCA-TCTTTTTTGCCCATTTTT---AGT----CA---------------------TCTT-TGTT-----TAT-TAT-----------GGT----GT-----AT--A-TATACAGT-------TTT----CATGATTGCTCTA--TA-T----------TA--A-TTAGGG-----------CACATTTCAGATATGC-TG---TTATTGTATTGTA-----------T-----------GT---AC---CTTT---TCGATTGTTCTCATT----TTT---CAT--A--TGA-CAGGTG-TA---------T-CA--AGAC-A------ATAC-----TGAT-A--CTATT----TG-G-T--T-----TT-AC--TTACATTGGC--TTC-TGT--AATAA--AT--GC--TCactgata
gi|4 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggACCTT-TTCGATTG-TTCTC-ATT-TTT---CA--TA-T-GACAGGTGTA-TCA-AGACAATA--C----------TGA-TA-CTATT----TG-GTTT-T-A-CTTACA-TTGG-CTT-CTGT--AATAA--AT--GC-TC-TT-TTTCAATTCA--AAG--TATGTTGCTA--TTA-CATG--TA--TC-T--ATT-G-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-A-CTTGAtttttcaattcaaagtatgttgctattacatgtatctattgtcaaaaaacagagtagagtagactccgatagaaagacttgaaggaaaacagtttatggtagaaaacat
gi|5 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccatttttagtcatctttgtttattatggtgtatatatacagttttcatgattgctctatattaattagggcacatttcagatatgctgttattgtattgtatgtACTCT-AAAAAT----TTAACTA-AAT-----CTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAATaggaaaacagtttatggtagaaaacat
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtCTT-GTGGCATA-GTCT---AGTCC--CA---------------------TCTA-TTTTGCC-AGTT-TAT-----------GGT-TAAGT-----AT--A-TG-----T-------TTC----CAT--------TA--TA-TGA---GGT-GTATAG-TTAGGC-----------CA---------------TG---T-----------A-----------TACTTGTATAATGT---GC---TTTT---TGAGTTATATT--TT---------ACAT--A--GGA-CAGTTG-TA---------TATA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----CT-AT-------------------------TAA--AT--TC--TCA-T-AAACA-----ACAC-AATTTatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-A-T-----------------------TAA--AT--TC-TC-AT-AAACAA--CA--CAA--T---TTGA-A--TTA-CTCT--TA--TG-C--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|6 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-T
gi|6 : tTG-TTTT-T-A-GT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTG-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAGTG--ATA-TTC----AGCC--------------------------------TTTGCCGATTT-TAT-----------GGC-TAAGT-----AT--A-T------T-------TTTTTTTCAT--------TA--TA-TGA---GTT-GTA--G-TTAGGCATGTATACTGGTAGT-------------TG---T-----------A-----------T-----------GT---GC---TTTTGTTTGGGTTATTTT--TT----T----ACAT--AT-GGAGCAGTTG-TA---------TGTAAATGTTTATT-TTC-TATAAAACT-AC-AATCTGT-C-AGTG-A-T--T-----TTTAT--TT---TTGGC--ATTGT-T--AATAA--AT--GC--TCA-T-AAACT------CAC-AATTTC-CTAT--------ACACTGTTC-AGTG-TTTTT-AAT-TAT-GGCA--TT-TTAATAAATGCG-TCATAAAC-ACAGCCAATTTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : gacaagtagatggctcATTTT-CTATAAAACTACAATCT-GTC-AGTGATTTTT-ATT-TTT-GGCA--TTGTTAATAAATGC--TCATAAACT-CA--CAATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAA-TT---A--TGG-CAT-TT-T--AATAA--AT--GCGTC-AT-AAAC-A--CAGCCAA--T---TTGA-A--TTGTCTTTTATA--TT-T--CTT-G-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-A-TTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGgaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|8 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttATA-TTCA---AGCC--------------------------------TTTGCC-ATTT-TAT-----------GGC-TAAGT-----AT--ATT------T-------TTC----CAT--------TAG-TA-TGA---GTT-GTA--G-TTAGGC-----------CATGGTATACTGGTAGTTG---T-----------A-----------T-----------GT---GCTTTTTTT---TGAGTTATTTT--TT----TAC--ATATGGA--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTATA----T-ACAA--CTG-TC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACT-G-TTC-AGTG-TTTTTAATT-ATTGGGCA--TT-TTAATAAATGC--TCATAAAC-ACA--CAATTTatggtta
gi|8 : tgTTTC-CTATA----TACA-ACT-GTC-AGTG-ATTTT-ATT-TTT-GGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-AATT---A-TTGGGCAT-TT-T--AATAA--AT--GC-TC-AT-AAAC-A--CA--CAA--T---TTGA-A--TTG-CTTT--TA---T-T--CTT-G-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A--TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|9 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTGGCATA-TTCT---AGTCC--CA---------------------TC-T-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGCATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAG---TTCT--TT----TTA--ACAT--AGTGGA-CAATTG-TA---------TGTA--TGTT-ATT-T--CTAT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----TT--T--TA---TTGGC--ATT-C-T--AATAA--AT--GC--TCA-TAAAACA-----ACACAAATTTatggta
gi|9 : caatacatgcattgttgaaatttacctTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T---TT---A-TTGG-CAT-TC-T--AATAA--AT--GC-TC-ATAAAACAA--CA--CAAATT---TTG--A--ATA-C-TT--TA--TT-T--CTT---GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAA-CTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC
Alignments
lowQualScore : 11111 11 333333333 11 2222 333333333333 222 1 1 222222222222222222222 11111111111 2222222222222222222 11111111 11111111111 88888888888888888888888888888888888888888888888888888888 111111111 111111111 11111 22222222222222 11 22222
lowQualScore : 5 0 5 44444 22 3 1 6 3 999999999 33 1111 2 3 999 3 000000000000 3 2 2 9 222 0 66 2 0 7 2 1 2 2 4 666 555 888888888888888888888 3 6 3 55555555555 3 88888 1111111111111111111 6666 00000000 66 2 555 0 3 33 3 44444444444 22222222222222222222222222222222222222222222222222222222 666 666 666 55 222222222 1 44 77 3 1 3 333333333 77 33 3 1 11111 6 3 77 3 6 3 77 77777 3 44 999 44 3 3 44 77 44 44 444 99999 3 5 99999999999999 4 4 4 8 66 5 66 9 66 4 3 3 3 3 3 555 555 3 3 3 3 44 44 44 3 3 3 44 44 44 555 44444 3 44 44 2 33 2 2 2 77 2 2 2 2 77 2 2 2 2 2 4 2 2 2 2 2 77 2 2 5 2 2 2 2 2
lowQualScore : . . . ..... .. . . . . ......... .. .... . . ... . ............ . . . . ... . .. . . . . . . . . ... ... ..................... . . . ........... . ..... ................... .... ........ .. . ... . . .. . ........... ........................................................ ... ... ... .. ......... . .. .. . . . ......... .. .. . . ..... . . .. . . . .. ..... . .. ... .. . . .. .. .. .. ... ..... . . .............. . . . . .. . .. . .. . . . . . . ... ... . . . . .. .. .. . . . .. .. .. ... ..... . .. .. . .. . . . .. . . . . .. . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 7 7 7 33333 11 4 9 7 5 000000000 88 2222 0 2 555 2 555555555555 2 5 5 2 555 2 55 5 0 0 5 7 4 5 0 444 000 333333333333333333333 3 7 3 88888888888 3 33333 1111111111111111111 5555 44444444 88 9 444 4 1 99 1 66666666666 33333333333333333333333333333333333333333333333333333333 444 444 444 00 666666666 4 66 99 3 0 3 333333333 99 88 3 2 77777 7 3 99 3 7 3 99 77777 1 22 222 66 3 3 66 99 66 66 111 11111 6 0 00000000000000 4 4 4 9 11 0 99 5 99 0 3 6 6 3 3 222 888 1 1 1 1 22 22 22 1 1 1 22 22 22 444 11111 1 22 22 9 99 5 5 5 99 2 2 1 1 11 1 1 1 1 1 2 1 1 1 7 7 33 7 7 3 7 9 9 9 9
consensus : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( family-1155 ) : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCAT-----CTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTTGGTCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAAC-ATTTC-AGTC-TAGT-GCATA-TTCT---GGTCC--CA---------------------TCTT-TTTTGCC-CTTT-TAT-----------GG--TAAGT-----ATTCT-T------T-------TCC----CAT--------TATTTA-TGA---GTTGGTA--G-TTTAGC-----------CA---------------TGAGTT-----------ACTGGTAGTTGTT-----------GT---GC----TTT---TGAGTTATTTT--TTTTTATTT--ACTC--A--GGA-CAGT--------------TGTA--TGCT-A-T-TTCCT-T-----T-A--A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GCGTCCA-T-AA--A-----ACAC-AATTTCACTAT-----TACACT-G-TTC-AGTG-TTTTT-ATTAATTGGCATTTT-TTAATAAATGC--TCATAAAAAACA--CAATTT---GATTA-C
gi|1 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttac-----TT-AT--TT---TT------TT-T-T--ATT-----T--AC--TCA---GGACAGTTGTATGC-TATTTC-CT-T-----TA---ACTGTTC-AGTG-ATTTT-ATT-TTTGGCA--TT-TTAATAAATGCGTCCATAAA--ACA--CAATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---AATTGG-CAT-TT-TTTAATAA--AT--GC-TC-AT-AAAAAA--CA--CAA--T---TTG--A--TTA-CTTT--TAATTT-T--CTT-G-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-A-C-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|10 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagTTTGTGGCATA-TTTTCTAAGTCCATCG---------------------TTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCAT--A-T------TCATTTTGTTC----AAT--------TA--TATTGAATGGGA-GTA--ATTTAGGC-----------CG---------------Tat
gi|10 : ttatttacaaagTA--G-TTA--------------TA---------------TG---T-----------C-----------T-----------GTTTTGT---TTTT---T-AGGTGGTTT--TT----ATT--ACCT--A--GGA-CA-TTGAAA---------TGTAT-TTTT-ATTGTGCCTAT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCTT-CTCACT---TAGGCTTATC-T-TCGAATAAC-AT--GC--TCATT-ATACA-----AC-C-AATTTctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgcctattacattgttcaagtgtattaatccttctcacttaggcttatcttcgaataacatgctcattatacaaccaatttgagtattactcttgatt
gi|11 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttt---------------TG---T-----------G-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTTTTAC-T--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAC-----T-AC-A--ATGTTT-AATG-A----T-----TT-AT--TTA--TTGGC--AAT-T-T--TATAAGTAT--GC--TGA-T-AAAC------ACAC-AATTTG-A-AT-----TAC------TTT-A------TTT-ACT-TTGGGCA--gagtattactcttgatt
gi|11 : aggccatgtatactggtagtTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-T-TT---A-TTGG-CAA-TT-T--TATAAGTAT--GC-TG-AT-AAACA---CA--CAA--T---TTG--AA-TTA-CTTT---A--TT-TACTTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-A-CTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACGaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|12 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatT----TTT--ACTC--A--CGA-CAATTG-TAATTATATAACGTA--TGT--ATG-TACATGT-----T-AC-A--CTGTGT-ATTT-ATT--T-----TT-GT--TG---TTGGT--AAT-T-T--AGTAG--ATACAC--TCA-C----CA-----ACAT-GATTTatg
gi|12 : ttttcattatataagatgtattggTGTTA-CA-CTGTGTATTTA-TTTT-T-G-TT---G-TTGG-TAA-TT-T--AGTAG--ATACAC-TC-AC----CAA--CA--TGA--T---TTGA-A--TGA-TTCT--TA--TC-T--TTT-T-GC-C--TAAA----A-AAGCA-AAGA-A--GTC-A-TT-GA-T-AG-GA-AT-ATTTTAATgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|15 : ttttcattatataagatgtattggttttactcacgacaattgtaattatataacgtatgtatgtaca-TTGG-CAT-TG-T--ACTAA--AT--GC-TC-TT-TA-CAA--CA--TAC--T---TTGG-A--CTA-CTAT--TG--TTAT--CTTTA-GG-C--ACAAA-ACA---GTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-A-CTatcaaagtttgttttaaacagaaatgattg
gi|16 : TCTCAGATTTT-GACAATATATTTAACTT-CAT-----CTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|17 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacAT--------TA--CA-AGA---GGT-GTA--A-TTATGC-----------CA---------------TG---T-----------A-----------T-----------
gi|17 : ttaT-GTA--G-TTATAG-----------CAGC-------------TG---T-----------A-----------T-----------GC---AC---TTAT---TGAGTCATTTT--T------------AT--A----------TC-TA---------GGCA--TAT--ATT-TTTCTAT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----TT-AT--Taattgtagttatagcagctgtatgcacttattgagtcatttttatatctaggcatatatttttctattacattgcccagtgaatggtttatt
gi|18 : ttaattacaagaggtgtaattatgccatgtataatAATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACG
gi|19 : tttcaattgtcctgattatataggcataagatgatTATTA-TA-CC--CCA-GTG-TTTTCT-A-T----A-TTG--CATATT-T--AATAA--AT--GC-TCCAT-AAACAA--CA--CAA--T---TTG--AATTTG-CTTT--TA--TT-C--TTT-GCGG-CC-AAAAA-ACA-AAGCA-GAGT-A--GAatggtata
gi|2 : ttTCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCGCCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTT-AAAAGTTTTT-GTT-CATTACATCTTGTATGTTT-A-TTGAT-ATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTTT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GTT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GTT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----CACACACT-TAC-AGTG-TTTTT-ATT-ATTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|20 : GCAT--TTCT----TTCC--CA---------------------TCTTGTTTTGCC-ATTT--AT-----------GGT-TAAGT------T--A--------T-------TTC----CAT--------TA--TA-AGA---G
gi|22 : ctctggaggggcactttccctaacatggttattgacatttgt-T--CTT-G-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|23 : T---AGTCC--CA---------------------TCTT-TTATCCC-AGTT-TAT-----------AGT-TCAGT-----ATC-A-T------T-------TT-----CAT--------TA--TG-T-A---GGT-GTA--atggtat
gi|24 : -G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-A-TTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaaatcataccagtttctggtatagta
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG---CTTGATatgt
gi|26 : -GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-A-CTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|28 : TT-G-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-atg
gi|29 : ATTTT-AATAATAGAATTAACTT-CAT-----CTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGA
gi|3 : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA-------------CCTCCCCTT--TCTACACCC----CCAAAAGTATATTTT-GTATCAG----TTTTG-TTCATTACATCATGTATG-TTTA-TTAA-TATATTCTAATGGCGGAC-ATTTCTAGTCCT------ATA-TTCT---AGTCC--CACCTTGACATATTCTAGTCCCATCTT-TTTTGCC-AATT-TAT-----------GAT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGTATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTA---T--TA----TTT--ACAT--A--GGA-CATTTG-TA---------TGTA--TGGT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TA---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTT
gi|3 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|31 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatga
gi|36 : -T------T-------CTC----CAT--------AA--TA-TGT---GGT-GTA--G-TTAGCC-----------CA---------------TG---T-----------A-----------T-----------atggtat
gi|4 : TCTCA-ATTTT-CATTGTACAA---ACTC-CATGACGGTTGATCACGTGATCGTTGTT--------------GAAGGGAGA-AGAATTT-G---AC--CCTCCCCTTCATCCACACATTTTGCTGAATGTA-ATC----TTTAAA----------TAC-CTACTCCTT---TGGTT------ATTATGTTTTAAT--CAAACTAGTCCCA-TCTTTTTTGCCCATTTTT---AGT----CA---------------------TCTT-TGTT-----TAT-TAT-----------GGT----GT-----AT--A-TATACAGT-------TTT----CATGATTGCTCTA--TA-T----------TA--A-TTAGGG-----------CACATTTCAGATATGC-TG---TTATTGTATTGTA-----------T-----------GT---AC---CTTT---TCGATTGTTCTCATT----TTT---CAT--A--TGA-CAGGTG-TA---------T-CA--AGAC-A------ATAC-----TGAT-A--CTATT----TG-G-T--T-----TT-AC--TTACATTGGC--TTC-TGT--AATAA--AT--GC--TCactgata
gi|4 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggACCTT-TTCGATTG-TTCTC-ATT-TTT--CA--TA-T-GACAGGTGTA-TCA-AGACAATA--C----------TGA-TA-CTATT----TG-GTTT-T-A-CTTACA-TTGG-CTT-CTGT--AATAA--AT--GC-TC-TT-TTTCAATTCA--AAG--TATGTTGCTA--TTA-CATG--TA--TC-T--ATT-G-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-A-CTTGAtttttcaattcaaagtatgttgctattacatgtatctattgtcaaaaaacagagtagagtagactccgatagaaagacttgaaggaaaacagtttatggtagaaaacat
gi|5 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccatttttagtcatctttgtttattatggtgtatatatacagttttcatgattgctctatattaattagggcacatttcagatatgctgttattgtattgtatgtACTCT-AAAAAT----TTAACTA-AAT-----CTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAATaggaaaacagtttatggtagaaaacat
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtCTT-GTGGCATA-GTCT---AGTCC--CA---------------------TCTA-TTTTGCC-AGTT-TAT-----------GGT-TAAGT-----AT--A-TG-----T-------TTC----CAT--------TA--TA-TGA---GGT-GTATAG-TTAGGC-----------CA---------------TG---T-----------A-----------TACTTGTATAATGT---GC---TTTT---TGAGTTATATT--TT---------ACAT--A--GGA-CAGTTG-TA---------TATA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----CT-AT-------------------------TAA--AT--TC--TCA-T-AAACA-----ACAC-AATTTatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-A-T-----------------------TAA--AT--TC-TC-AT-AAACAA--CA--CAA--T---TTGA-A--TTA-CTCT--TA--TG-C--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|6 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-T
gi|6 : tTG-TTTT-T-A-GT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTG-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAGTG--ATA-TTC----AGCC--------------------------------TTTGCCGATTT-TAT-----------GGC-TAAGT-----AT--A-T------T-------TTTTTTTCAT--------TA--TA-TGA---GTT-GTA--G-TTAGGCATGTATACTGGTAGT-------------TG---T-----------A-----------T-----------GT---GC---TTTTGTTTGGGTTATTTT--TT----T----ACAT--AT-GGAGCAGTTG-TA---------TGTAAATGTTTATT-TTC-TATAAAACT-AC-AATCTGT-C-AGTG-A-T--T-----TTTAT--TT---TTGGC--ATTGT-T--AATAA--AT--GC--TCA-T-AAACT------CAC-AATTTC-CTAT--------ACACTGTTC-AGTG-TTTTT-AAT-TATGGCA--TT-TTAATAAATGCG-TCATAAAC-ACAGCCAATTTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : gacaagtagatggctcATTTT-CTATAAAACTACAATCT-GTC-AGTGATTTTT-ATT-TTTGGCA--TTGTTAATAAATGC--TCATAAACT-CA--CAATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAA-TT---A--TGG-CAT-TT-T--AATAA--AT--GCGTC-AT-AAAC-A--CAGCCAA--T---TTGA-A--TTGTCTTTTATA--TT-T--CTT-G-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-A-TTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGgaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|8 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttATA-TTCA---AGCC--------------------------------TTTGCC-ATTT-TAT-----------GGC-TAAGT-----AT--ATT------T-------TTC----CAT--------TAG-TA-TGA---GTT-GTA--G-TTAGGC-----------CATGGTATACTGGTAGTTG---T-----------A-----------T-----------GT---GCTTTTTTT---TGAGTTATTTT--TT----TAC--ATATGGA--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTATA----T-ACAA--CTG-TC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACT-G-TTC-AGTG-TTTTTAATTATTGGGCA--TT-TTAATAAATGC--TCATAAAC-ACA--CAATTTatggtta
gi|8 : tgTTTC-CTATA----TACA-ACT-GTC-AGTG-ATTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-AATT---A-TTGGGCAT-TT-T--AATAA--AT--GC-TC-AT-AAAC-A--CA--CAA--T---TTGA-A--TTG-CTTT--TA---T-T--CTT-G-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A--TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|9 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTGGCATA-TTCT---AGTCC--CA---------------------TC-T-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGCATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAG---TTCT--TT----TTA--ACAT--AGTGGA-CAATTG-TA---------TGTA--TGTT-ATT-T--CTAT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----TT--T--TA---TTGGC--ATT-C-T--AATAA--AT--GC--TCA-TAAAACA-----ACACAAATTTatggta
gi|9 : caatacatgcattgttgaaatttacctTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T---TT---A-TTGG-CAT-TC-T--AATAA--AT--GC-TC-ATAAAACAA--CA--CAAATT---TTG--A--ATA-C-TT--TA--TT-T--CTT---GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAA-CTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC
Alignments
lowQualScore : 11111 11 333333333 11 2222 333333333333 222 1 1 222222222222222222222 11111111111 2222222222222222222 11111111 11111111111 88888888888888888888888888888888888888888888888888888888 111111111 111111111 11111 22222222222222 11 22222
lowQualScore : 5 0 5 44444 22 3 1 6 3 999999999 33 1111 2 3 999 3 000000000000 3 2 2 9 222 0 66 2 0 7 2 1 2 2 4 666 555 888888888888888888888 3 6 3 55555555555 3 88888 1111111111111111111 6666 00000000 66 2 555 0 3 33 3 44444444444 22222222222222222222222222222222222222222222222222222222 666 666 666 55 222222222 1 44 77 3 1 3 333333333 77 33 3 1 11111 6 3 77 3 6 3 77 77777 3 44 999 44 3 3 44 77 44 44 444 99999 3 5 99999999999999 4 4 4 8 66 5 66 9 66 4 3 3 3 3 3 555 555 3 3 3 3 44 44 44 3 3 3 44 44 44 555 44444 3 44 44 2 33 2 2 2 77 2 2 2 2 77 2 2 2 2 2 4 2 2 2 2 2 77 2 2 5 2 2 2 2 2
lowQualScore : . . . ..... .. . . . . ......... .. .... . . ... . ............ . . . . ... . .. . . . . . . . . ... ... ..................... . . . ........... . ..... ................... .... ........ .. . ... . . .. . ........... ........................................................ ... ... ... .. ......... . .. .. . . . ......... .. .. . . ..... . . .. . . . .. ..... . .. ... .. . . .. .. .. .. ... ..... . . .............. . . . . .. . .. . .. . . . . . . ... ... . . . . .. .. .. . . . .. .. .. ... ..... . .. .. . .. . . . .. . . . . .. . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 7 7 7 33333 11 4 9 7 5 000000000 88 2222 0 2 555 2 555555555555 2 5 5 2 555 2 55 5 0 0 5 7 4 5 0 444 000 333333333333333333333 3 7 3 88888888888 3 33333 1111111111111111111 5555 44444444 88 9 444 4 1 99 1 66666666666 33333333333333333333333333333333333333333333333333333333 444 444 444 00 666666666 4 66 99 3 0 3 333333333 99 88 3 2 77777 7 3 99 3 7 3 99 77777 1 22 222 66 3 3 66 99 66 66 111 11111 6 0 00000000000000 4 4 4 9 11 0 99 5 99 0 3 6 6 3 3 222 888 1 1 1 1 22 22 22 1 1 1 22 22 22 444 11111 1 22 22 9 99 5 5 5 99 2 2 1 1 11 1 1 1 1 1 2 1 1 1 7 7 33 7 7 3 7 9 9 9 9
consensus : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( family-1155 ) : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCAT-----CTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTTGGTCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAAC-ATTTC-AGTC-TAGT-GCATA-TTCT---GGTCC--CA---------------------TCTT-TTTTGCC-CTTT-TAT-----------GG--TAAGT-----ATTCT-T------T-------TCC----CAT--------TATTTA-TGA---GTTGGTA--G-TTTAGC-----------CA---------------TGAGTT-----------ACTGGTAGTTGTT-----------GT---GC----TTT---TGAGTTATTTT--TTTTTATTT--ACTC--A--GGA-CAGT--------------TGTA--TGCT-A-T-TTCCT-T-----T-A--A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GCGTCCA-T-AA--A-----ACAC-AATTTCACTAT-----TACACT-G-TTC-AGTG-TTTTT-ATTAATTGGCATTTT-TTAATAAATGC--TCATAAAAAACA--CAATTT---GATTA-C
gi|1 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttac-----TT-AT--TT---TT------TT-T-T--ATT-----T--AC--TCA---GGACAGTTGTATGC-TATTTC-CT-T-----TA---ACTGTTC-AGTG-ATTTT-ATT-TTTGGCA--TT-TTAATAAATGCGTCCATAAA--ACA--CAATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---AATTGG-CAT-TT-TTTAATAA--AT--GC-TC-AT-AAAAAA--CA--CAA--T---TTG--A--TTA-CTTT--TAATTT-T--CTT-G-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-A-C-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|10 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagTTTGTGGCATA-TTTTCTAAGTCCATCG---------------------TTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCAT--A-T------TCATTTTGTTC----AAT--------TA--TATTGAATGGGA-GTA--ATTTAGGC-----------CG---------------Tat
gi|10 : ttatttacaaagTA--G-TTA--------------TA---------------TG---T-----------C-----------T-----------GTTTTGT---TTTT---T-AGGTGGTTT--TT----ATT--ACCT--A--GGA-CA-TTGAAA---------TGTAT-TTTT-ATTGTGCCTAT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCTT-CTCACT---TAGGCTTATC-T-TCGAATAAC-AT--GC--TCATT-ATACA-----AC-C-AATTTctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgcctattacattgttcaagtgtattaatccttctcacttaggcttatcttcgaataacatgctcattatacaaccaatttgagtattactcttgatt
gi|11 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttt---------------TG---T-----------G-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTTTTAC-T--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAC-----T-AC-A--ATGTTT-AATG-A----T-----TT-AT--TTA--TTGGC--AAT-T-T--TATAAGTAT--GC--TGA-T-AAAC------ACAC-AATTTG-A-AT-----TAC------TTT-A------TTT-ACT-TTGGGCA--gagtattactcttgatt
gi|11 : aggccatgtatactggtagtTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-T-TT---A-TTGG-CAA-TT-T--TATAAGTAT--GC-TG-AT-AAACA---CA--CAA--T---TTG--AA-TTA-CTTT---A--TT-TACTTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-A-CTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACGaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|12 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatT----TTT--ACTC--A--CGA-CAATTG-TAATTATATAACGTA--TGT--ATG-TACATGT-----T-AC-A--CTGTGT-ATTT-ATT--T-----TT-GT--TG---TTGGT--AAT-T-T--AGTAG--ATACAC--TCA-C----CA-----ACAT-GATTTatg
gi|12 : ttttcattatataagatgtattggTGTTA-CA-CTGTGTATTTA-TTTT-T-G-TT---G-TTGG-TAA-TT-T--AGTAG--ATACAC-TC-AC----CAA--CA--TGA--T---TTGA-A--TGA-TTCT--TA--TC-T--TTT-T-GC-C--TAAA----A-AAGCA-AAGA-A--GTC-A-TT-GA-T-AG-GA-AT-ATTTTAATgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|15 : ttttcattatataagatgtattggttttactcacgacaattgtaattatataacgtatgtatgtaca-TTGG-CAT-TG-T--ACTAA--AT--GC-TC-TT-TA-CAA--CA--TAC--T---TTGG-A--CTA-CTAT--TG--TTAT--CTTTA-GG-C--ACAAA-ACA---GTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-A-CTatcaaagtttgttttaaacagaaatgattg
gi|16 : TCTCAGATTTT-GACAATATATTTAACTT-CAT-----CTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|17 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacAT--------TA--CA-AGA---GGT-GTA--A-TTATGC-----------CA---------------TG---T-----------A-----------T-----------
gi|17 : ttaT-GTA--G-TTATAG-----------CAGC-------------TG---T-----------A-----------T-----------GC---AC---TTAT---TGAGTCATTTT--T------------AT--A----------TC-TA---------GGCA--TAT--ATT-TTTCTAT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----TT-AT--Taattgtagttatagcagctgtatgcacttattgagtcatttttatatctaggcatatatttttctattacattgcccagtgaatggtttatt
gi|18 : ttaattacaagaggtgtaattatgccatgtataatAATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACG
gi|19 : tttcaattgtcctgattatataggcataagatgatTATTA-TA-CC--CCA-GTG-TTTTCT-A-T----A-TTG--CATATT-T--AATAA--AT--GC-TCCAT-AAACAA--CA--CAA--T---TTG--AATTTG-CTTT--TA--TT-C--TTT-GCGG-CC-AAAAA-ACA-AAGCA-GAGT-A--GAatggtata
gi|2 : ttTCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCGCCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTT-AAAAGTTTTT-GTT-CATTACATCTTGTATGTTT-A-TTGAT-ATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTTT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GTT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GTT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----CACACACT-TAC-AGTG-TTTTT-ATT-ATTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|20 : GCAT--TTCT----TTCC--CA---------------------TCTTGTTTTGCC-ATTT--AT-----------GGT-TAAGT------T--A--------T-------TTC----CAT--------TA--TA-AGA---G
gi|22 : ctctggaggggcactttccctaacatggttattgacatttgt-T--CTT-G-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|23 : T---AGTCC--CA---------------------TCTT-TTATCCC-AGTT-TAT-----------AGT-TCAGT-----ATC-A-T------T-------TT-----CAT--------TA--TG-T-A---GGT-GTA--atggtat
gi|24 : -G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-A-TTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaaatcataccagtttctggtatagta
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG---CTTGATatgt
gi|26 : -GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-A-CTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|28 : TT-G-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-atg
gi|29 : ATTTT-AATAATAGAATTAACTT-CAT-----CTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGA
gi|3 : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA-------------CCTCCCCTT--TCTACACCC----CCAAAAGTATATTTT-GTATCAG----TTTTG-TTCATTACATCATGTATG-TTTA-TTAA-TATATTCTAATGGCGGAC-ATTTCTAGTCCT------ATA-TTCT---AGTCC--CACCTTGACATATTCTAGTCCCATCTT-TTTTGCC-AATT-TAT-----------GAT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGTATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTA---T--TA----TTT--ACAT--A--GGA-CATTTG-TA---------TGTA--TGGT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TA---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTT
gi|3 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgaattacttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|31 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatga
gi|36 : -T------T-------CTC----CAT--------AA--TA-TGT---GGT-GTA--G-TTAGCC-----------CA---------------TG---T-----------A-----------T-----------atggtat
gi|4 : TCTCA-ATTTT-CATTGTACAA---ACTC-CATGACGGTTGATCACGTGATCGTTGTT--------------GAAGGGAGA-AGAATTT-G---AC--CCTCCCCTTCATCCACACATTTTGCTGAATGTA-ATC----TTTAAA----------TAC-CTACTCCTT---TGGTT------ATTATGTTTTAAT--CAAACTAGTCCCA-TCTTTTTTGCCCATTTTT---AGT----CA---------------------TCTT-TGTT-----TAT-TAT-----------GGT----GT-----AT--A-TATACAGT-------TTT----CATGATTGCTCTA--TA-T----------TA--A-TTAGGG-----------CACATTTCAGATATGC-TG---TTATTGTATTGTA-----------T-----------GT---AC---CTTT---TCGATTGTTCTCATT----TTT---CAT--A--TGA-CAGGTG-TA---------T-CA--AGAC-A------ATAC-----TGAT-A--CTATT----TG-G-T--T-----TT-AC--TTACATTGGC--TTC-TGT--AATAA--AT--GC--TCactgata
gi|4 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggACCTT-TTCGATTG-TTCTC-ATT-TTT--CA--TA-T-GACAGGTGTA-TCA-AGACAATA--C----------TGA-TA-CTATT----TG-GTTT-T-A-CTTACA-TTGG-CTT-CTGT--AATAA--AT--GC-TC-TT-TTTCAATTCA--AAG--TATGTTGCTA--TTA-CATG--TA--TC-T--ATT-G-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-A-CTTGAtttttcaattcaaagtatgttgctattacatgtatctattgtcaaaaaacagagtagagtagactccgatagaaagacttgaaggaaaacagtttatggtagaaaacat
gi|5 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccatttttagtcatctttgtttattatggtgtatatatacagttttcatgattgctctatattaattagggcacatttcagatatgctgttattgtattgtatgtACTCT-AAAAAT----TTAACTA-AAT-----CTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAATaggaaaacagtttatggtagaaaacat
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtCTT-GTGGCATA-GTCT---AGTCC--CA---------------------TCTA-TTTTGCC-AGTT-TAT-----------GGT-TAAGT-----AT--A-TG-----T-------TTC----CAT--------TA--TA-TGA---GGT-GTATAG-TTAGGC-----------CA---------------TG---T-----------A-----------TACTTGTATAATGT---GC---TTTT---TGAGTTATATT--TT---------ACAT--A--GGA-CAGTTG-TA---------TATA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----CT-AT-------------------------TAA--AT--TC--TCA-T-AAACA-----ACAC-AATTTatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-A-T-----------------------TAA--AT--TC-TC-AT-AAACAA--CA--CAA--T---TTGA-A--TTA-CTCT--TA--TG-C--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|6 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-T
gi|6 : tTG-TTTT-T-A-GT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--AA-TTG-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAGTG--ATA-TTC----AGCC--------------------------------TTTGCCGATTT-TAT-----------GGC-TAAGT-----AT--A-T------T-------TTTTTTTCAT--------TA--TA-TGA---GTT-GTA--G-TTAGGCATGTATACTGGTAGT-------------TG---T-----------A-----------T-----------GT---GC---TTTTGTTTGGGTTATTTT--TT----T----ACAT--AT-GGAGCAGTTG-TA---------TGTAAATGTTTATT-TTC-TATAAAACT-AC-AATCTGT-C-AGTG-A-T--T-----TTTAT--TT---TTGGC--ATTGT-T--AATAA--AT--GC--TCA-T-AAACT------CAC-AATTTC-CTAT--------ACACTGTTC-AGTG-TTTTT-AAT-TATGGCA--TT-TTAATAAATGCG-TCATAAAC-ACAGCCAATTTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : gacaagtagatggctcATTTT-CTATAAAACTACAATCT-GTC-AGTGATTTTT-ATT-TTTGGCA--TTGTTAATAAATGC--TCATAAACT-CA--CAATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAA-TT---A--TGG-CAT-TT-T--AATAA--AT--GCGTC-AT-AAAC-A--CAGCCAA--T---TTGA-A--TTGTCTTTTATA--TT-T--CTT-G-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-A-TTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGgaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|8 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttATA-TTCA---AGCC--------------------------------TTTGCC-ATTT-TAT-----------GGC-TAAGT-----AT--ATT------T-------TTC----CAT--------TAG-TA-TGA---GTT-GTA--G-TTAGGC-----------CATGGTATACTGGTAGTTG---T-----------A-----------T-----------GT---GCTTTTTTT---TGAGTTATTTT--TT----TAC--ATATGGA--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTATA----T-ACAA--CTG-TC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACT-G-TTC-AGTG-TTTTTAATTATTGGGCA--TT-TTAATAAATGC--TCATAAAC-ACA--CAATTTatggtta
gi|8 : tgTTTC-CTATA----TACA-ACT-GTC-AGTG-ATTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-AATT---A-TTGGGCAT-TT-T--AATAA--AT--GC-TC-AT-AAAC-A--CA--CAA--T---TTGA-A--TTG-CTTT--TA---T-T--CTT-G-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A--TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|9 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTGGCATA-TTCT---AGTCC--CA---------------------TC-T-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--ATT------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CATGCATACTGGTAGT-TG---T-----------A-----------T-----------GT---GC---TTTT---TGAG---TTCT--TT----TTA--ACAT--AGTGGA-CAATTG-TA---------TGTA--TGTT-ATT-T--CTAT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----TT--T--TA---TTGGC--ATT-C-T--AATAA--AT--GC--TCA-TAAAACA-----ACACAAATTTatggta
gi|9 : caatacatgcattgttgaaatttacctTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T---TT---A-TTGG-CAT-TC-T--AATAA--AT--GC-TC-ATAAAACAA--CA--CAAATT---TTG--A--ATA-C-TT--TA--TT-T--CTT---GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAA-CTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtgaatactttatttcttggcaaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
blockSeqs : . . GACGG CA G T C T CGCCCACCT CA TTTG A T TTA T AGTTTTTGTT A C G T TA TT G T T G T T G T CTA CAT CCTTGACATATTCTAGTCCCA G G G TAAAAGTTAAG A AAGTC ATTCATTTTG TTTT GATTGCTC G T ATG . TA T ATGTATACTGG CATTTCAGATATGCTGTTATTGTATTGTAT TTT TTT GTT CA TTTTT C GG GT G G A ATTATATAA AA TT G G AAAAC G A AT A T T GG AATCC T CA ACA TT G G CG GT AC . TT GTTGT A . AAAACTACAATCT G A A A . G GT A GC A A G T A C AA TAC . G A G . GT AC G C A TT GC AT ATG AAT T TA . A AC T C C CA C G T A AG T C T T T A T A T C G TT G G T . C . C G
blockSeqs : . . . CA T T . T GAC . . A T TT T TTTTGTT A C G G A T G . T G T A G . . C . . G . . . . ATATACAGT . . . . . . . . . TGGTATACTGGTAGTTGTAT . . . . ATT T . T . A . . T T . T A A . G . A . G . . . A . . . . C . . TA . . . CACACACT . . . . . . A A . . . . . . . AA . . . . . . . . . . . . . . . CTA . . . . . . . . C . . . . A . . . . . T . . . . . TT . . T . . . . .
blockSeqs : . . . C T T . A . . . G . . . TA . C . . . T . . C . C T T . . C . . . . . . . CATT . . . . . . . . . TGTATACTGGTAGTTGTAT . . . . TTT A . . . G . . . T . A . . . . . . . . . . . . . . . . . . . T . . . ATACAACT . . . . . . G T . . . . . . . T . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C C T . T T A G . . C . . . . . . . ATTT . . . . . . . . . TGCATACTGGTAGTTGTAT . . . . TTT A . . . T . . . T . T . . . . . . . . . . . . . . . . . . . C . . . TACACTG . . . . . . . A . . . . . . . G . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C G A . . T . G . . C . . . . . . . ATGT . . . . . . . . . TGTATACTTGTATAAT . . . . TTT A . . . G . . . T . T . . . . . . . . . . . . . . . . . . . T . . . TAACTG . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . GA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . C . . . . . . . ATTT . . . . . . . . . GCTGTAT . . . . TTT A . . . G . . . C . T . . . . . . . . . . . . . . . . . . . T . . . ACACTG . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . ATTT . . . . . . . . . GTTGTAT . . . . TAC A . . . G . . . T . T . . . . . . . . . . . . . . . . . . . T . . . TAC . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . ATTT . . . . . . . . . TGTCT . . . . TTA A . . . G . . . T . T . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . A . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . ATT . . . . . . . . . TGTGT . . . . T A . . . A . . . T . T . . . . . . . . . . . . . . . . . . . T . . . . . . . . A . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . ATT . . . . . . . . . TGTAT . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . AT . . . . . . . . . TGTAT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . TGTAT . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : CA ATTT*************** ** TTT****** ** TACACT******** ** ** AA*** ** **
originalCons : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----AT--A-T------T-------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TT----TTT--ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTAT-----TACACNCT-TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A--TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
finalCons : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTACATTTTTGTCTAGACGGGAAA-AAATCTT-GCCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----ATATTT---------------TTC----CAT--------TA--TA-TGA---GGT-GTA--G-TTAGGC-----------CA---------------TG---T-----------A-----------T-----------GT---GC---TTTT---TGAGTTATTTT--TTTTT------ACAT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCTAT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--ATT-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACAC-AATTTC-CTATTACACT--------TTC-AGTG-TTTTT-ATT-TTTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-A-TT---A-TTGG-CAT-TT-T--AATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTGAA---TTA-CTTT--TA--TT-T--CTT-G-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 11 333333 11 2222 333333333333 222 1 1 222222222222222222222 11111111111 11111111 000000000000000000000000000000000000000000000000000000000 111111111 11111 222222222222 111111 111 11
lowQualScore : 5 0 5 44444 99 3 1 6 3 444444 9 33 1111 2 3 999 3 000000000000 3 2 2 9 222 0 66 2 0 7 2 1 2 2 4 666 555 888888888888888888888 3 6 3 55555555555 3 77777 3 3 2 6666 888888 0 555 00000000 66 2 555 4 3 44 3 222222222222222222222222222222222222222222222222222222222 666 666 555 1 44 6666 44 33 44 77 3 2 3 222222222 77 44 3 0 3 00000 6 3 77 3 6 3 77777777 2 33 888 44 3 3 3 44 77 44 44 3 3 0 999999 555 555555555555 555555 3 0 88 3 000 55 5 66 6 66 4 3 3 3 3 3 6 999 3 44 3 3 44 44 3 3 3 44 44 44 555 44 3 3 44 44 2 33 2 2 5 55 2 2 2 2 77 2 2 2 2 2 4 2 2 2 2 2 77 2 2 5 2 2 2 2 2
lowQualScore : . . . ..... .. . . . . ...... . .. .... . . ... . ............ . . . . ... . .. . . . . . . . . ... ... ..................... . . . ........... . ..... . . . .... ...... . ... ........ .. . ... . . .. . ......................................................... ... ... ... . .. .... .. .. .. .. . . . ......... .. .. . . . ..... . . .. . . . ........ . .. ... .. . . . .. .. .. .. . . . ...... ... ............ ...... . . .. . ... .. . .. . .. . . . . . . . ... . .. . . .. .. . . . .. .. .. ... .. . . .. .. . .. . . . .. . . . . .. . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 7 7 7 33333 66 4 9 7 5 000000 2 88 2222 0 2 555 2 555555555555 2 5 5 2 555 2 55 5 0 0 5 7 4 5 0 444 000 333333333333333333333 3 7 3 88888888888 3 77777 1 1 9 1111 222222 8 000 44444444 88 9 444 6 3 22 3 333333333333333333333333333333333333333333333333333333333 444 444 888 2 66 5555 22 77 22 33 1 1 1 333333333 33 88 1 5 1 88888 2 1 33 1 2 1 55555555 9 99 555 22 1 1 1 22 33 22 22 3 3 5 555555 000 000000000000 000000 6 5 22 6 333 55 0 99 5 99 0 3 6 6 3 3 7 222 1 22 1 1 22 22 1 1 1 22 22 22 444 66 1 1 22 22 9 99 7 5 0 66 2 2 1 1 11 1 1 1 1 1 2 1 1 1 7 7 33 7 7 3 7 9 9 9 9
consensus : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTT-G-CCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----A-T-AT-T----T------TTC---CAT--------TA--TA-TGA---GGT-G--TAG-TTAGGC-----------CA---------------TG---T-----------A-----------TGT---GC---TTTT---TGAGTTATTTT--TT----TTT--AC-AT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCT-AT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--AT-T-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACACAATT---T-C-CTAT-----TACA--CT-TTC-AGTG-TTTTT-ATT-T-TTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-ATT---ATT-GGCA--T-TT-TAATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTGA-A-TTA-CTTT--TA--TT-T--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
Reference ( family-1155 ) : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTACATTTTTGTCTAGACGGGAAA-AAATCTT-G-CCCACCTCCTCCCCTT--TCTACACCT----CCGAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACATCTTGTATGTTTTA-TTGATTATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----A-T-AT-T----T------TTC---CAT--------TA--TA-TGA---GGT-G--TAG-TTAGGC-----------CA---------------TG---T-----------A-----------TGT---GC---TTTT---TGAGTTATTTT--TT----TTT--AC-AT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCT-AT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--AT-T-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACACAATT---T-C-CTAT-----TACA--CT-TTC-AGTG-TTTTT-ATT-T-TTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-T-ATT---ATT-GGCA--T-TT-TAATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTGA-A-TTA-CTTT--TA--TT-T--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|1 : TCTCAGATTTTTAATAATAGAATTAACTTTCAT-----CTGATCACGTGACTGTTGTTTA--TTTTTGTTAAGACGAGAAA-AAATCTT-GGTCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTTTAAAAGTTTTTTGTTTCATTACAT-TTGTATGTTTTATTTGATTAGGTTTTAATGGCGAAC-ATTTC-AGTC-TAGT-GCATA-TTCT---GGTCC--CA---------------------TCTT-TTTTGCC-CTTT-TAT-----------GG--TAAGT-----ATT-CT-T----T------TCC---CAT--------TATTTA-TGA---GTTGG--TAG-TTTAGC-----------CA---------------TGAGTT-----------ACTGGTAGTTGTTGT---GC----TTT---TGAGTTATTTT--TTTTTATTT--AC-TC--A--GGA-CAGT--------------TGTA--TGCT-A-T-TTCCT--T-----T-A--A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--AT-T-T-T--AATAA--AT--GCGTCCA-T-AA--A-----ACACAATT---T-CACTAT-----TACA--CTGTTC-AGTG-TTTTT-ATTAA-TTGGCATTTT-TTAATAAATGC--TCATAAAAAACA--CAATTT---GATTA-C
gi|1 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttac-----TT-AT--TT---TT------T-T-T-T--ATT-----T--AC--TCA---GGACAGTTGTATGCTATT---T-C-CT-T-----TA-A--CTGTTC-AGTG-ATTTT-ATT-T-TTGGCA--TT-TTAATAAATGCGTCCATAA--AACA--CAATTTCACTATTA-CA-CTGTTCA-GTG-TTTT-T-ATTA--ATT-GGCATTT-TT-TAATAA--AT--GC-TC-AT-AAAAAA--CA--CAA--T---TTG--A-TTA-CTTT--TAATTT-T--C-TTG-GG-CA-AAAAA-ACA-AAGCA-GAGT-A--GAC---TT-GG-T-AG-AA-AG-A-C-TAATCACG-TC-TG----GT-GTTG-TAA-TAGG-CCTGA-GACGttttaattttcttgggcaaaaaaacaaagcagagtagacttggtagaaagactaatcacgtctggtgttgtaataggcctgagacgat
gi|10 : cttgtatttatgtgaaacataaagtaatttataccatctcggttttaatctttcggattctgtatttgttactctcagatttttaataatagaattaactttcatctgatcacgtgactgttgtttatttttgttaagacgagaaaaaatcttggtccacctcctcccctttctacacctccaaatgtatattttagtttaaaagttttttgtttcattacatttgtatgttttatttgattaggttttaatggcgaacatttcagtctagtgcatattctggtcccatcttttttgcccttttatggtaagtattcttttcccattatttatgagttggtagtttagccatgagttactggtagttgttgtgcttttgagTTTGTGGCATA-TTTTCTAAGTCCATCG---------------------TTTT-TTTTGCCGATTTGTATTAAAAGTTAAGGGTATAAGTAAGTCA-T-AT-T----CATTTTGTTC---AAT--------TA--TATTGAATGGGA-G--TAATTTAGGC-----------CG---------------Tat
gi|10 : ttatttacaaag--TAG-TTA--------------TA---------------TG---T-----------C-----------TGTTTTGT---TTTT---T-AGGTGGTTT--TT----ATT--AC-CT--A--GGA-CA-TTGAAA---------TGTAT-TTTT-ATTGTGCCT-AT-----T-AC-A--TTGTTCAAGTGTA-T--TAATCCTT-CTCACT---TAGGCTTAT-C-T-TCGAATAAC-AT--GC--TCATT-ATACA-----AC-CAATT---TGA-GTAT-----TACT--CT-Tctgataattaccttttagttatatgtctgttttgttttttaggtggtttttattacctaggacattgaaatgtatttttattgtgcctattacattgttcaagtgtattaatccttctcacttaggcttatcttcgaataacatgctcattatacaaccaatttgagtattactcttgatt
gi|11 : ttatttacaaagtttgtggcatattttctaagtccatcgttttttttgccgatttgtattaaaagttaagggtataagtaagtcatattcattttgttcaattatattgaatgggagtaatttaggccgtctgataattaccttt---------------TG---T-----------G-----------TGT---GC---TTTT---TGAGTTATTTT--TT----TTTTTAC--T--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCT-AC-----T-AC-A--ATGTTT-AATG-A----T-----TT-AT--TTA--TTGGC--AA-T-T-T--TATAAGTAT--GC--TGA-T-AAAC------ACACAATT---T-G-A-AT-----TAC------TTT-A------TTT-ACT-T-TGGGCA--gatt
gi|11 : aggccatgtatactggtagtTTTC-CTACTA-CA-ATGTTTA-ATG-ATTT-A-TTT---ATT-GGCA--A-TT-TTATAAGTAT--GC-TG-AT-AAACA---CA--CAA--T---TTGA-A-TTA-CTTT---A--TT-TACT-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GACTT-TT-GG-T-AGAAA-AG-A-CTTAATCACGCTA-TG--T-GTGGTTG-T-ACTA-G--CTGA-GACGaaaaacaaagcagagtagacttttggtagaaaagacttaatcacgctatgtgtggttgtactagctgagacgatg
gi|12 : aggccatgtatactggtagttgtgtgtgctttttgagttatttttttttttactaggacagttgtatgtatgttatT----TTT--AC-TC--A--CGA-CAATTG-TAATTATATAACGTA--TGT--ATG-TACAT-GT-----T-AC-A--CTGTGT-ATTT-ATT--T-----TT-GT--TG---TTGGT--AA-T-T-T--AGTAG--ATACAC--TCA-C----CA-----ACATGATT---T-atg
gi|12 : ttttcattatataagatgtattggTGTTA-CA-CTGTGTATTTA-TTTT-T-GTT---GTT-GGTA--A-TT-TAGTAG--ATACAC-TC-AC----CAA--CA--TGA--T---TTGA-A-TGA-TTCT--TA--TC-T--T-TTT-GC-C--TAAA----A-AAGCA-AAGA-A--GTC-A-TT-GA-T-AG-GA-AT-ATTTTAATgaatgattcttatctttttgcctaaaaaagcaaagaagtcattgataggaatattttaatatcaaagtttgttttaaacagaaatgattg
gi|15 : ttttcattatataagatgtattggttttactcacgacaattgtaattatataacgtatgtatgtacaTT-GGCA--T-TG-TACTAA--AT--GC-TC--T-TTACAA--CA--TAC--T---TTGG-A-CTA-CTAT--TG--TTAT--CTTTA-GG-C--ACAAA-AC---AGTA-GAGT-A--GAC---TC-AG-T--G-AA-AG-A-CTatcaaagtttgttttaaacagaaatgattg
gi|16 : TCTCAGATTTT-GACAATATATTTAACTT-CAT-----CTGGTCACGTTACTGTTGTTTACATGTTTGTCTAGACAGAAAACAAATCTattggtgtaagacgattagaataattactgtgatttgaacaaatttt
gi|17 : atttatgccatctttacttgtgtttatcctttccggattctgcgtttgtacGT-----A---AT-T----A------TGC---CAT---------G--TA-TAA---T-T-G--TAG-TTATAG-----------CAGC-------------TG---T-----------A-----------TGC---AC---TTAT---TGAGTCATTTT--T-------------AT--A----------TC-TA---------GGCA--TAT--ATT-TTTCT-AT-----T-AC-A--TTGCCC-AGTGAA-TGGT-----TT-AT--T
gi|18 : ttaattacaagaggtAATA-ACA-AAGCA-GAGT-G--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TT-TG--T-AT-GTTG-T-A-TA-G-TCTGA-GACG
gi|19 : tttcaattgtcctgattatataggcataagatgatTATTA-TA-CC--CCA-GTG-TTTTCT-AT----ATT-G-CA--TATT-TAATAA--AT--GC-TCCAT-AAACAA--CA--CAA--T---TTGA-ATTTG-CTTT--TA--TT-C--T-TTGCGGCC--AAAAA-ACA-AAGCA-GAGT-A--GAatggtata
gi|2 : ttTCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TTTTTGTCTAGACGGGAAA-AAATCTTCG-CCCACCTCCTCCCCTT--TCTACACCT----CCAAATGTATATTTTAGTT-AAAAGTTTTT-GTT-CATTACATCTTGTATGTTT-A-TTGAT-ATGTTTTAATGGCGGAC-ATTTCTAGTCTTAGTGGCATA-TTTT---AGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GTT-TAAGT-----A-T-AT-T----T------T-C---CAT--------TA--TA-TGA---GTT-G--TAG-TTAGGC-----------CA---------------TG---T-----------A-----------TGT---GC---TTTT---TGAGTTATTTT--TT----TTT--AC-AT--A--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCT-AT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TT---TTGGC--AT-T-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACACAATT---T-C-CTATCA---CACA--CT-TAC-AGTG-TTTTT-ATT-A-TTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATCA-CA-CTATTCA-GTG-TTTT-T-ATT---ATT-GGCA--T-TT-TAATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTG--A-TTA-CTTT--TA--TT-T--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACA-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|20 : GCAT--TTCT----TTCC--CA---------------------TCTTGTTTTGCC-ATTT--AT-----------GGT-TAAGT-------T-A-------T------TTC---CAT--------TA--TA-AGA---G
gi|22 : ctctggaggggcactttccctaacatggttattgacatttgt-T--C-TTG-GG-C--AAAAACAAA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TCGTG--T-GT-GTTG-T-A-TA-G-CCTGA-GACG
gi|23 : T---AGTCC--CA---------------------TCTT-TTATCCC-AGTT-TAT-----------AGT-TCAGT-----A-TCAT-T----T------T-----CAT--------TA--TG-T-A---GGT-G--TAatggtat
gi|24 : G-GG-C--AAAAA-CAA-AAGCA-GATT-A--GAC-T-TT-GG-T-AG-AA-AG-A-TTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaaatcataccagtttctggtatagta
gi|25 : --AAAAA-CCA-GAGTA-GAGT-A--AAC-T-CT-GG-T-AG-AA-AG---CTTGATatgt
gi|26 : -GAGT-AA-GAC-T-TTTGG-TTAG-ATTAG-A-CTTAATCACG-TC-TG--TGGT-GTTG-T-A-TA-GCCCTGA-GACGagaaaaaaaaccaagtttatggtagaaatcat
gi|28 : -TTG-GG-C--AAAAC-ACA-AAGCA-GAGT-A--GAC-T-TT-GA-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-atg
gi|29 : ATTTT-AATAATAGAATTAACTT-CAT-----CTGATTACGTGACTGTTGTTTAC-TTTTTGTCTAGA
gi|3 : TCTCAGATTTT-AATAATAGAATTAACTT-CAT-----CTGATCACGTGACTGTTGTTTAC-TCTTTGTCTAGACGGGAAA-AAA--------------CCTCCCCTT--TCTACACCC----CCAAAAGTATATTTT-GTATCAG----TTTTG-TTCATTACATCATGTATG-TTTA-TTAA-TATATTCTAATGGCGGAC-ATTTCTAGTCCT------ATA-TTCT---AGTCC--CACCTTGACATATTCTAGTCCCATCTT-TTTTGCC-AATT-TAT-----------GAT-TAAGT-----A-T-AT-T----T------TTC---CAT--------TA--TA-TGA---GGT-G--TAG-TTAGGC-----------CATGTATACTGGTAGT-TG---T-----------A-----------TGT---GC---TTTT---TGAGTTA---T--TA----TTT--AC-AT--A--GGA-CATTTG-TA---------TGTA--TGGT-ATT-TTCCT-AT-----T-AC-A--CTGTTC-AGTG-A-T--T-----TT-AT--TA---TTGGC--AT-T-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACACAATT---T-G-A-AT-----TAC----------------TTTT-ATT-TCTTGG
gi|3 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtacTTTC-CTATTA-CA-CTGTTCA-GTG-ATTT-T-ATT---ATT-GGCA--T-TT-TAATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTGA-A-TTA-CTTT--TA--TT-T--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCGCG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-AACGgcaaaaaacaaagcagagtagactttggtagaaagacttaatcgcgtatgtgtgttgtatagcctgaaacgatga
gi|31 : ataattgcatttatgtgaaacataaagtaatttataccatctcgtgtttaatctttccggtttctgcatttgtactctcagattttaataatagaattaacttcatctgatcacgtgactgttgtttactctttgtctagacgggaaaaaacctcccctttctacacccccaaaagtatattttgtatcagttttgttcattacatcatgtatgtttattaatatattctaatggcggacatttctagtcctatattctagtcccaccttgacatattctagtcccatcttttttgccaatttatgattaagtatatttttccattatatgaggtgtagttaggccatgtatactggtagttgtatgtgctttttgagttattatttacataggacatttgtatgtatggtatAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCATG-TA-TG--T-CT-GTTG-T-A-TA-G-TCTGA-GACGatga
gi|36 : -T----T------CTC---CAT--------AA--TA-TGT---GGT-G--TAG-TTAGCC-----------CA---------------TG---T-----------A-----------Tatggtat
gi|4 : TCTCA-ATTTT-CATTGTACAA---ACTC-CATGACGGTTGATCACGTGATCGTTGTT--------------GAAGGGAGA-AGAATTT-G----ACC--CTCCCCTTCATCCACACATTTTGCTGAATGTA-ATC----TTTAAA----------TAC-CTACTCCTT---TGGTT------ATTATGTTTTAAT--CAAACTAGTCCCA-TCTTTTTTGCCCATTTTT---AGT----CA---------------------TCTT-TGTT-----TAT-TAT-----------GGT----GT-----A-T-ATATACAGT------TTT---CATGATTGCTCTA--TA-T------------TAA-TTAGGG-----------CACATTTCAGATATGC-TG---TTATTGTATTGTA-----------TGT---AC---CTTT---TCGATTGTTCTCATT----TTT---C-AT--A--TGA-CAGGTG-TA---------T-CA--AGAC-A------AT-AC-----TGAT-A--CTATT----TG-G-T--T-----TT-AC--TTACATTGGC--TT-C-TGT--AATAA--AT--GC--TCactgata
gi|4 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggTTT---TTAGTCATCTT--TG----TTT--ATTAT--G--G-------TG-TA---------TATA--TACA-GTT-TTCATGAT-----T-GC-T--CT----------A-T--A-----TT-AA--TT---AGGGC--ACAT-T-T--CAGAT--AT--GC--TGT-T-A---------------TTGTAT-T-GTATG----TACC--TT-TTCGATTG-TTCTC-ATT-T-TT--CA--TA-T-GACAGGTGTA-TCA-AGACAATA--C----------TGA-TA-CTATT----TG-GTTT-T-ACTTACATT-GGCT--T-CTGTAATAA--AT--GC-TC-TT-TTTCAATTCA--AAG--TATGTTGCTA-TTA-CATG--TA--TC-T--A-TTG-T--C--AAAAA-ACA-GAGTA-GAGT-A--GAC-T-CC-GA-T-AG-AA-AG-A-CTTGAtttttcaattcaaagtatgttgctattacatgtatctattgtcaaaaaacagagtagagtagactccgatagaaagacttgaaggaaaacagtttatggtagaaaacat
gi|5 : aattgtatttatatgaagcataaagtaatttataccatctctattatcataattatttggtttgtatttttccggatttgtcgtctctccggtctcaattttcattgtacaaactccatgacggttgatcacgtgatcgttgttgaagggagaagaatttgaccctccccttcatccacacattttgctgaatgtaatctttaaatacctactcctttggttattatgttttaatcaaactagtcccatcttttttgcccaACTCT-AAAAAT----TTAACTA-AAT-----CTGATCACGTGACAGTTGTTTACATGTTTGTCATGACGGAAGA-AAATaggaaaacagtttatggtagaaaacat
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtCTT-GTGGCATA-GTCT---AGTCC--CA---------------------TCTA-TTTTGCC-AGTT-TAT-----------GGT-TAAGT-----A-T-AT-G----T------TTC---CAT--------TA--TA-TGA---GGT-GTATAG-TTAGGC-----------CA---------------TG---TATACTTGTATAA-----------TGT---GC---TTTT---TGAGTTA---T--AT----TTT--AC-AT--A--GGA-CAGTTG-TA---------TATA--TGTT-ATT-TTCCT-AT-----T-AC-A--CTGTTC-AGTG-A-TG-T-----CT-AT--------------------------TAA--AT--TC--TCA-T-AAACA-----ACACAATT---T-G-A-AT-----TACT--CT-Tatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttattttcctattacactgttcagtgatgtctattaaattctcataaacaacacaatttgaattactcttatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|5 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagTTTC-CTATTA-CA-CTGTTCA-GTGATGTC-T-AT----------------------TAA--AT--TC-TC-AT-AAACAA--CA--CAA--T---TTGA-A-TTA-CTCT--TA--TG-C--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CATAATCACG-TA-TG--T-GT-TTTA-T-A-GA-G-CATGA-GAatgccttgggcaaaaaacaaagcagagtagactttggtagaaagacataatcacgtatgtgttttatagagcatgaga
gi|6 : atatttgtatttatgtaaaatataaagtaatttataccatctcgtgtttaatctttccgaattctgggatgtactctaaaaatttaactaaatctgatcacgtgacagttgtttacatgtttgtcatgacggaagaaaatatgttactatgtcaggcgttacgtattcattgtgttttctaccacgcgtctcctctggatgggggcacttgtccctaacacaatgaatattgtcttattaacaagcttgtggcatagtctagtcccatctattttgccagtttatggttaagtatatgtttccattatatgaggtgtatagttaggccatgtatacttgtataatgtgctttttgagttatattttacataggacagttgtatatatgttatGTCC--CA---------------------TCTT-TTTTGCC-ATTT-TAT-----------GGT-TAAGT-----A-T-AT-T----T------TTC---CAT--------TA--TA-T
gi|6 : tTG-TTTT-T-AGT---ATT-GGCA--T-TT-TAATAA--AT--GC-TC-AT-AAACAA--CA--CAA--T---TTGA-A-TTG-CTTT--TA--TT-T--C-TTG-GG-C--AAAAA-ACA-AAGCA-GAGT-A--GAC-T-TT-GG-T-AG-AA-AG-A-CTTAATCACG-TC-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGtatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttagtattggcattttaataaatgctcataaacaacacaatttgaattgcttttatttcttgggcaaaaaacaaagcagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : tgtcccatcttttttgccattttatggttaagtatatttttccattatattatattatgtgttcacattatattatgtgttcaccatggccatgtatactggtagttatatgtgctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAGTG--ATA-TTC----AGCC--------------------------------TTTGCCGATTT-TAT-----------GGC-TAAGT-----A-T-AT-T----T------TTTTTTCAT--------TA--TA-TGA---GTT-G--TAG-TTAGGCATGTATACTGGTAGT-------------TG---T-----------A-----------TGT---GC---TTTTGTTTGGGTTATTTT--TT----T----AC-AT--AT-GGAGCAGTTG-TA---------TGTAAATGTTTATT-TTC-T-ATAAAACT-AC-AATCTGT-C-AGTG-A-T--T-----TTTAT--TT---TTGGC--AT-TGT-T--AATAA--AT--GC--TCA-T-AAAC------TCACAATT---T-C-CTA------TACA--CTGTTC-AGTG-TTTTT-AAT-T-ATGGCA--TT-TTAATAAATGCG-TCATAAAC-ACAGCCAATTTatggtataattatctgtaaaacagataattttaacatgcaataccctatcataatgaatattttaaaatctattttctttatttcaaatttggtattttataatt
gi|7 : gacaagtagatggctcATT---T-T-CTATAAAACTACAATCT-GTC-AGTGATTTTT-ATT-T-TTGGCA--TTGTTAATAAATGC--TCATAAACT-CA--CAATTTC-CTAT-A-CA-CTGTTCA-GTG-TTTT-TAATT---A-T-GGCA--T-TT-TAATAA--AT--GCGTC-AT-AAAC-A--CAGCCAA--T---TTGA-A-TTGTCTTTTATA--TT-T--C-TTG-GGCC--AAAAA-ACAGAAGCA-GAGT-AAGAAC-TCTT-GG-T-AA-AG-AG-A-TTTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGAGGACGgaattgtcttttatatttcttgggccaaaaaacagaagcagagtaagaactcttggtaaagagatttaatcacgtctgtttgtgttgttatagcctgaggacgatggtta
gi|8 : gacaagtagatggctctagtgatattcagcctttgccgattttatggctaagtatatttttttttcattatatgagttgtagttaggcatgtatactggtagttgtatgtgcttttgtttgggttatttttttacatatggagcagttgtatgtaaatgtttATA-TTCA---AGCC--------------------------------TTTGCC-ATTT-TAT-----------GGC-TAAGT-----A-T-AT-T----T------TTC---CAT--------TAG-TA-TGA---GTT-G--TAG-TTAGGC-----------CATGGTATACTGGTAGTTG---T-----------A-----------TGT---GCTTTTTTT---TGAGTTATTTT--TT----TAC--AT-ATGGA--GGA-CAGTTG-TA---------TGTA--TGTT-ATT-TTCCT-ATA----T-ACAA--CTG-TC-AGTG-A-T--T-----TT-AT--TT---TTGGC--AT-T-T-T--AATAA--AT--GC--TCA-T-AAACA-----ACACAATT---T-C-CTAT-----TACA--CTGTTC-AGTG-TTTTTAATTAT-TGGGCA--TT-TTAATAAATGC--TCATAAAC-ACA--CAATTTatggtta
gi|8 : tgTT---T-C-CTATA----TACAA-CT-GTC-AGTG-ATTTT-ATT-T-TTGGCA--TT-TTAATAAATGC--TCATAAACAACA--CAATTTC-CTATTA-CA-CTGTTCA-GTG-TTTT-TAATT---ATTGGGCA--T-TT-TAATAA--AT--GC-TC-AT-AAAC-A--CA--CAA--T---TTGA-A-TTG-CTTT--TA---T-T--C-TTG-GG-CCAAAAAA-ACA-AAGCATGAGTAA--GAC-T-TT-GG-T-A--AA-AG-A--TTAATCACG-TC-TGTTT-GT-GTTGTT-A-TA-G-CCTGA-GACGgaattgcttttattcttgggccaaaaaaacaaagcatgagtaagactttggtaaaagattaatcacgtctgtttgtgttgttatagcctgagacgatggta
gi|9 : tgatattcaagcctttgccattttatggctaagtatatttttccattagtatgagttgtagttaggccatggtatactggtagttgtatgtgcttttttttgagttatttttttacatatggaggacagttgtatgtatgttatTGGCATA-TTCT---AGTCC--CA---------------------TCTT-TT-TGCC-ATTT-TAT-----------GGT-TAAGT-----A-T-AT-T----T------TTC---CAT--------TA--TA-TGA---GGT-G--TAG-TTAGGC-----------CATGCATACTGGTAGT-TG---T-----------A-----------TGT---GC---TTTT---TGAG---TTCT--TT----TTA--AC-AT--AGTGGA-CAATTG-TA---------TGTA--TGTT-ATT-T--CT-AT-----TAAC-AG-CTGTTC-AGTG-A-T--T-----TT--T--TA---TTGGC--AT-T-C-T--AATAA--AT--GC--TCA-TAAAACA-----ACACAA---------------------A--TT-TTG-AATA--CTTT-ATT-TCTTGGCA--atggta
gi|9 : caatacatgcattgttgaaatttacctTTT-CTATTAACAGCTGTTCA-GTG-ATTT-T--TT---ATT-GGCA--T-TC-TAATAA--AT--GC-TC-ATAAAACAA--CA--CAAATT---TTGA-A--TA-C-TT--TA--TT-T--C-TT--GG-C--AAAGA-ACA-AAGCA-GAGT-AT-GAC-T-TT-GGTT-AGTAA-AGAA-CTTAA-CACG-TA-TG--T-GT-GTTG-T-A-TA-G-CCTGA-GACGaagaacaaagcagagtatgactttggttagtaaagaacttaacacgtatgtgtgttgtatagcctgagacgatggt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTATTTATGTGAAGCATAAATTTAGAGCATCTCTATTATAATTTTTTGGTTTGTAATTATCCGGATTTGTCATCTCTCCGGTTCTTAATTCTCATTTTACAAACTCCATGACGGTTGATCACGTGCTCTTTGTTGTCTGCAATTTTTGAAGGGAGAAGAATT
Unaligned ( gi|14 ): AATTGTATTTATGTGAAGCATAAAGTAATTTATACAAACTCTATTATAATTATTTAGTTTGTATTTTCCGGATATGTCATCTCTTCGGTTTTAATTCTCATTCTACAAACTCCATTTCTTTTGATCACGTGATATTTGTTGCC
Unaligned ( gi|21 ): AATTGTATTTATGTGAAACATAAAGTAATTTATATCATCTCGTGTTTAATCTTTCCGGATTCTGCATTTGTACTCTCAGATTTTAATA
Unaligned ( gi|27 ): TATCATAATGAATGTTTTGAAATCCATGTATATTTTCTTTATTTCAAAACTTGGTATTTTATA
Unaligned ( gi|30 ): AATGAATATTTTCAAATTTATTTTCTTCATTTCAAAATTGATATTTTATAAATATGTG
Unaligned ( gi|32 ): TATAAAATCAATTTAATTATATTCAATTAAAATATTTAAATCAAGATTTTTTTTA
Unaligned ( gi|33 ): TATTTTACTATTTTAAGTGTTGTGTATTCATGTGCTTTCTCCCACGCG
Unaligned ( gi|34 ): CACAGCACAACCACACTACTGATAACTAGAAATCCATTTTCTTTAT
Unaligned ( gi|35 ): TAATTGTATTTATGTGAAGTATAATGTAAGTTATACTATCTCGGTC